Query 041609
Match_columns 71
No_of_seqs 105 out of 288
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dsq_A Nucleic acid binding pr 96.3 0.0016 5.6E-08 30.7 1.4 18 53-70 2-19 (26)
2 1nc8_A Nucleocapsid protein; H 96.3 0.0013 4.6E-08 31.7 1.1 18 53-70 6-23 (29)
3 1a6b_B Momulv, zinc finger pro 95.7 0.0031 1.1E-07 32.9 0.9 17 54-70 11-27 (40)
4 2hqh_E Restin; beta/BETA struc 95.4 0.0046 1.6E-07 29.7 0.8 17 54-70 4-20 (26)
5 2ysa_A Retinoblastoma-binding 95.2 0.0042 1.4E-07 34.4 0.5 17 54-70 8-24 (55)
6 1u6p_A GAG polyprotein; MLV, A 95.1 0.006 2E-07 33.9 0.8 17 54-70 24-40 (56)
7 2ec7_A GAG polyprotein (PR55GA 94.5 0.016 5.5E-07 30.7 1.7 17 54-70 7-23 (49)
8 1a1t_A Nucleocapsid protein; s 94.3 0.014 4.8E-07 31.4 1.1 18 53-70 12-29 (55)
9 2ihx_A Nucleocapsid (NC) prote 94.3 0.015 5.2E-07 32.0 1.2 16 54-69 5-20 (61)
10 2bl6_A Nucleocapsid protein P1 94.1 0.018 6E-07 28.8 1.2 16 55-70 2-17 (37)
11 2a51_A Nucleocapsid protein; s 94.1 0.016 5.6E-07 29.2 1.1 17 54-70 22-38 (39)
12 2bl6_A Nucleocapsid protein P1 94.1 0.014 4.6E-07 29.2 0.6 18 53-70 19-36 (37)
13 2a51_A Nucleocapsid protein; s 94.0 0.019 6.4E-07 29.0 1.2 16 55-70 2-17 (39)
14 3nyb_B Protein AIR2; polya RNA 93.7 0.02 6.9E-07 33.8 1.0 17 54-70 47-63 (83)
15 2cqf_A RNA-binding protein LIN 93.4 0.031 1.1E-06 31.0 1.4 18 53-70 7-24 (63)
16 2ec7_A GAG polyprotein (PR55GA 93.1 0.026 8.8E-07 29.9 0.7 17 54-70 28-44 (49)
17 2li8_A Protein LIN-28 homolog 92.9 0.036 1.2E-06 31.9 1.3 19 52-70 23-41 (74)
18 1a1t_A Nucleocapsid protein; s 92.2 0.041 1.4E-06 29.4 0.8 17 54-70 34-50 (55)
19 2ihx_A Nucleocapsid (NC) prote 91.8 0.056 1.9E-06 29.7 1.1 18 53-70 30-47 (61)
20 1cl4_A Protein (GAG polyprotei 91.7 0.062 2.1E-06 29.2 1.2 19 52-70 29-47 (60)
21 2cqf_A RNA-binding protein LIN 90.8 0.088 3E-06 29.1 1.2 18 53-70 29-46 (63)
22 3ts2_A Protein LIN-28 homolog 88.9 0.11 3.7E-06 33.3 0.7 16 55-70 99-114 (148)
23 2pzo_E CAP-Gly domain-containi 88.2 0.15 5.1E-06 26.8 0.8 17 54-70 21-37 (42)
24 3ts2_A Protein LIN-28 homolog 88.1 0.15 5E-06 32.6 0.9 18 53-70 119-136 (148)
25 2li8_A Protein LIN-28 homolog 88.0 0.12 4.2E-06 29.6 0.5 18 53-70 46-63 (74)
26 2lli_A Protein AIR2; RNA surve 86.9 0.23 7.9E-06 30.3 1.3 18 53-70 105-122 (124)
27 3e2u_E CAP-Gly domain-containi 85.5 0.25 8.7E-06 26.0 0.8 18 53-70 20-37 (42)
28 2lli_A Protein AIR2; RNA surve 83.8 0.37 1.3E-05 29.3 1.1 17 54-70 65-81 (124)
29 2jmo_A Parkin; IBR, E3 ligase, 64.8 2.5 8.4E-05 24.0 1.1 16 54-70 59-74 (80)
30 1ef4_A Subunit N, DNA-directed 63.1 2.2 7.7E-05 23.4 0.7 11 52-62 2-12 (55)
31 4ayb_N DNA-directed RNA polyme 61.9 2.5 8.7E-05 24.0 0.8 11 52-62 3-13 (66)
32 2ct7_A Ring finger protein 31; 45.2 6.2 0.00021 22.4 0.6 17 54-70 52-71 (86)
33 2db6_A SH3 and cysteine rich d 44.4 25 0.00085 19.3 3.1 15 47-62 23-37 (74)
34 2kwq_A Protein MCM10 homolog; 39.8 14 0.00048 22.0 1.6 17 46-62 57-74 (92)
35 1ptq_A Protein kinase C delta 38.0 10 0.00035 19.0 0.7 12 51-62 9-20 (50)
36 2fnf_X Putative RAS effector N 34.1 14 0.00049 20.4 1.0 15 48-62 30-44 (72)
37 1bw3_A Barwin, basic barley SE 33.7 9.4 0.00032 23.9 0.1 27 24-53 91-122 (125)
38 2h1t_A Hypothetical protein; s 33.5 12 0.00042 24.8 0.7 35 21-55 100-139 (188)
39 1faq_A RAF-1; transferase, ser 33.1 13 0.00044 18.8 0.6 14 48-62 10-23 (52)
40 1rfh_A RAS association (ralgds 32.6 15 0.00051 19.4 0.9 14 49-62 18-31 (59)
41 2yvr_A Transcription intermedi 31.4 15 0.00052 18.3 0.7 12 50-61 15-26 (50)
42 2enz_A NPKC-theta, protein kin 30.6 18 0.00061 19.3 1.0 12 51-62 21-32 (65)
43 3alr_A Nanos protein; zinc-fin 28.7 17 0.0006 22.3 0.7 17 54-70 72-91 (106)
44 2row_A RHO-associated protein 28.5 38 0.0013 19.5 2.2 21 39-61 23-43 (84)
45 2w0t_A Lethal(3)malignant brai 28.0 21 0.00072 18.5 0.9 15 53-67 6-20 (43)
46 2d8u_A Ubiquitin ligase TRIM63 26.9 21 0.00073 18.5 0.8 12 50-61 17-28 (64)
47 3uej_A NPKC-delta, protein kin 26.6 20 0.00068 19.0 0.7 12 51-62 18-29 (65)
48 3j20_Y 30S ribosomal protein S 25.7 19 0.00065 18.8 0.5 12 50-61 16-27 (50)
49 2ag4_A GM2-AP, ganglioside GM2 25.5 66 0.0022 20.2 3.1 26 12-37 29-54 (164)
50 1bi6_H Bromelain inhibitor VI; 24.9 21 0.00072 18.0 0.5 14 48-61 10-23 (41)
51 2lcq_A Putative toxin VAPC6; P 23.7 34 0.0012 21.2 1.5 14 48-61 141-156 (165)
52 1rlf_A RLF, RLF-RBD; signal tr 23.7 59 0.002 19.3 2.4 24 17-40 7-30 (90)
53 2yuu_A NPKC-delta, protein kin 23.5 27 0.00092 19.5 0.9 14 48-62 24-37 (83)
54 1y8f_A UNC-13 homolog A, MUNC1 23.2 55 0.0019 17.3 2.1 14 48-62 20-33 (66)
55 2con_A RUH-035 protein, NIN on 23.0 23 0.00079 20.4 0.5 10 52-61 29-38 (79)
56 2eli_A Protein kinase C alpha 22.6 30 0.001 19.4 1.0 12 51-62 26-37 (85)
57 2enn_A NPKC-theta, protein kin 22.0 60 0.002 17.8 2.2 21 39-61 22-42 (77)
58 1fre_A Nuclear factor XNF7; zi 21.8 34 0.0012 16.2 0.9 12 50-61 11-22 (42)
59 1paa_A Yeast transcription fac 21.6 29 0.001 13.8 0.6 9 53-61 2-10 (30)
60 1znf_A 31ST zinc finger from X 21.6 28 0.00097 13.5 0.6 9 53-61 1-9 (27)
61 2k2d_A Ring finger and CHY zin 21.0 67 0.0023 18.1 2.3 37 27-63 24-65 (79)
62 3d30_A YOAJ, expansin like pro 20.8 8.6 0.00029 25.5 -1.9 28 23-53 80-107 (208)
63 1ard_A Yeast transcription fac 20.7 32 0.0011 13.5 0.6 9 53-61 2-10 (29)
64 2kvh_A Zinc finger and BTB dom 20.6 29 0.00098 13.7 0.5 9 53-61 3-11 (27)
65 2did_A Tripartite motif protei 20.6 34 0.0012 17.1 0.9 12 50-61 16-27 (53)
66 3o9x_A Uncharacterized HTH-typ 20.5 69 0.0023 18.5 2.3 28 34-65 20-48 (133)
67 2k4x_A 30S ribosomal protein S 20.3 36 0.0012 18.0 0.9 12 50-61 15-26 (55)
No 1
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.28 E-value=0.0016 Score=30.68 Aligned_cols=18 Identities=33% Similarity=0.914 Sum_probs=16.0
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+.-|+.||..||..++|+
T Consensus 2 ~~~Cf~CG~~GH~ardC~ 19 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCK 19 (26)
T ss_dssp CCBCTTTCCBSSCTTTTT
T ss_pred CCeeEeCCCCCcccccCC
Confidence 346999999999999996
No 2
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=96.27 E-value=0.0013 Score=31.66 Aligned_cols=18 Identities=39% Similarity=1.025 Sum_probs=15.9
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+.-|++||..||...+|+
T Consensus 6 ~~~C~nCgk~GH~ar~C~ 23 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCR 23 (29)
T ss_dssp CCBCTTTSCBSSCGGGCC
T ss_pred CCEEEECCccccCHhHCc
Confidence 356999999999999996
No 3
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=95.67 E-value=0.0031 Score=32.87 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=15.8
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
.-|+.||..||...+|+
T Consensus 11 ~~C~~Cgk~GH~ardCP 27 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCP 27 (40)
T ss_dssp SSCSSSCCTTCCTTSCS
T ss_pred CeeeECCCCCcchhhCc
Confidence 47999999999999997
No 4
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=95.36 E-value=0.0046 Score=29.67 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=15.8
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
+||.+|.+.||...+|.
T Consensus 4 pYCe~CE~FGH~t~~C~ 20 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCN 20 (26)
T ss_dssp CEETTTTEESSCGGGCC
T ss_pred ccchHHHHhCcccccCC
Confidence 68999999999999995
No 5
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.25 E-value=0.0042 Score=34.41 Aligned_cols=17 Identities=35% Similarity=0.909 Sum_probs=15.7
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
.-|+.||..||-+++|+
T Consensus 8 ~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCCTTTCCTTSCGGGCS
T ss_pred CccccCCCcCcccccCC
Confidence 46999999999999997
No 6
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=95.08 E-value=0.006 Score=33.87 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=15.8
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
.-|+.||..||...+|+
T Consensus 24 ~~C~~Cge~GH~ardCp 40 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCP 40 (56)
T ss_dssp TBCSSSCCBSSCGGGCT
T ss_pred CcceeCCCCCcccccCc
Confidence 56999999999999997
No 7
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=94.55 E-value=0.016 Score=30.67 Aligned_cols=17 Identities=41% Similarity=1.120 Sum_probs=9.3
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
..|+.||..||...+|+
T Consensus 7 ~~C~~Cg~~GH~a~~C~ 23 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCR 23 (49)
T ss_dssp CBCTTTCCBTCCTTTCC
T ss_pred CeeeecCCCCcChhhCc
Confidence 44555555555555553
No 8
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=94.30 E-value=0.014 Score=31.36 Aligned_cols=18 Identities=39% Similarity=0.992 Sum_probs=13.4
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+..|+.|+..||...+|+
T Consensus 12 ~~~C~~Cg~~GH~a~~C~ 29 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCR 29 (55)
T ss_dssp TCBCTTTCCBSSCGGGCS
T ss_pred CcceeeeCCCCcChhhcC
Confidence 456888888888777775
No 9
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=94.27 E-value=0.015 Score=32.05 Aligned_cols=16 Identities=44% Similarity=0.974 Sum_probs=7.9
Q ss_pred cccccccceecCCCcC
Q 041609 54 LKCIVCGNIGHDRTQC 69 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C 69 (71)
..|+.|+..||...+|
T Consensus 5 ~~C~~Cg~~GH~a~~C 20 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQC 20 (61)
T ss_dssp TBCSSSCCBTCCGGGC
T ss_pred CcccccCCCCeehhhC
Confidence 3455555555554444
No 10
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.13 E-value=0.018 Score=28.76 Aligned_cols=16 Identities=44% Similarity=1.053 Sum_probs=12.5
Q ss_pred ccccccceecCCCcCC
Q 041609 55 KCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 55 fC~~Cg~iGH~~~~C~ 70 (71)
.|+.|+..||...+|+
T Consensus 2 ~C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCR 17 (37)
T ss_dssp CBSSSCCSSCCTTTSS
T ss_pred cccccCCCCcchhhCc
Confidence 4788888888888775
No 11
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.13 E-value=0.016 Score=29.20 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=15.1
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
..|+.||..||...+|+
T Consensus 22 ~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp SSCTTTCCSSSCTTTSC
T ss_pred CccccCCCCCCccCcCc
Confidence 57999999999999986
No 12
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.06 E-value=0.014 Score=29.20 Aligned_cols=18 Identities=39% Similarity=0.866 Sum_probs=16.2
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
|..|+.||..||..++|+
T Consensus 19 ~~~C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 19 PKVCFKCKQPGHFSKQCR 36 (37)
T ss_dssp BTTCSSCCCTTGGGGTTC
T ss_pred cCeEccCCCcCCccCcCc
Confidence 357999999999999996
No 13
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.04 E-value=0.019 Score=28.99 Aligned_cols=16 Identities=38% Similarity=1.051 Sum_probs=14.8
Q ss_pred ccccccceecCCCcCC
Q 041609 55 KCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 55 fC~~Cg~iGH~~~~C~ 70 (71)
.|+.||..||...+|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 5999999999999996
No 14
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.02 Score=33.76 Aligned_cols=17 Identities=35% Similarity=0.915 Sum_probs=16.2
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
.+|++||.-||..++|+
T Consensus 47 ~~CYnCG~~GH~~rdC~ 63 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCK 63 (83)
T ss_dssp CBCSSSSCBSSCGGGCS
T ss_pred CeecccCCCCcCcccCC
Confidence 79999999999999997
No 15
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.38 E-value=0.031 Score=31.05 Aligned_cols=18 Identities=28% Similarity=0.883 Sum_probs=12.0
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+..|+.|+..||...+|+
T Consensus 7 ~~~C~~Cg~~GH~a~~C~ 24 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECK 24 (63)
T ss_dssp CCCCSSSCCSSSCTTTCC
T ss_pred CCcccccCCCCcChhhCC
Confidence 445777777777776665
No 16
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=93.07 E-value=0.026 Score=29.86 Aligned_cols=17 Identities=35% Similarity=0.882 Sum_probs=15.6
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
..|+.||..||...+|+
T Consensus 28 ~~C~~Cg~~GH~~~~C~ 44 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCP 44 (49)
T ss_dssp CSCSSSCCSSCCGGGCC
T ss_pred CeeCcCCCcCCccCCCc
Confidence 47999999999999996
No 17
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=92.92 E-value=0.036 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.800 Sum_probs=16.5
Q ss_pred CccccccccceecCCCcCC
Q 041609 52 LPLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 52 LP~fC~~Cg~iGH~~~~C~ 70 (71)
.+..|+.||..||...+|+
T Consensus 23 r~~~C~~Cg~~GH~a~~C~ 41 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECK 41 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCS
T ss_pred CCCcccccCCcCcCcccCC
Confidence 4568999999999999996
No 18
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=92.24 E-value=0.041 Score=29.45 Aligned_cols=17 Identities=35% Similarity=0.888 Sum_probs=15.7
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
..|+.||..||...+|+
T Consensus 34 ~~C~~Cg~~GH~~~~C~ 50 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCT 50 (55)
T ss_dssp CBCTTTCCBSSCGGGCS
T ss_pred CEeCCCCCcCCccCCCc
Confidence 57999999999999997
No 19
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=91.79 E-value=0.056 Score=29.69 Aligned_cols=18 Identities=33% Similarity=1.021 Sum_probs=16.2
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+..|+.|+..||...+|+
T Consensus 30 ~~~C~~Cg~~GH~ar~C~ 47 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCR 47 (61)
T ss_dssp CSBCTTTCCBSSCGGGCC
T ss_pred CCeeCCCCCCCCCcCCCc
Confidence 357999999999999996
No 20
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=91.67 E-value=0.062 Score=29.21 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.7
Q ss_pred CccccccccceecCCCcCC
Q 041609 52 LPLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 52 LP~fC~~Cg~iGH~~~~C~ 70 (71)
...-|+.||..||...+|+
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~ 47 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECK 47 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCC
T ss_pred CCcceeECCCCCCccCcCC
Confidence 3467999999999999996
No 21
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.79 E-value=0.088 Score=29.12 Aligned_cols=18 Identities=39% Similarity=0.870 Sum_probs=16.4
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+..|+.|+..||...+|+
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp 46 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCP 46 (63)
T ss_dssp SSCCTTTCCSSSCTTTCT
T ss_pred CCccCCcCCcCCccCcCC
Confidence 468999999999999996
No 22
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=88.93 E-value=0.11 Score=33.26 Aligned_cols=16 Identities=31% Similarity=1.109 Sum_probs=14.9
Q ss_pred ccccccceecCCCcCC
Q 041609 55 KCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 55 fC~~Cg~iGH~~~~C~ 70 (71)
-|++||..||...+|+
T Consensus 99 ~C~~Cg~~GH~a~~C~ 114 (148)
T 3ts2_A 99 RCYNCGGLDHHAKECK 114 (148)
T ss_dssp CCTTTCCSSCCGGGCC
T ss_pred cccEeCCccchhhhCC
Confidence 5999999999999996
No 23
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=88.21 E-value=0.15 Score=26.84 Aligned_cols=17 Identities=35% Similarity=0.769 Sum_probs=15.7
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
.+|-.|.+.||...+|+
T Consensus 21 pYCd~CEvFGH~t~~Cn 37 (42)
T 2pzo_E 21 PYCEICEMFGHWATNCN 37 (42)
T ss_dssp CEETTTTEESSCGGGCC
T ss_pred cccccccccCcccccCC
Confidence 58999999999999995
No 24
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=88.11 E-value=0.15 Score=32.65 Aligned_cols=18 Identities=39% Similarity=0.870 Sum_probs=16.5
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+.-|+.||..||...+|+
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp 136 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCP 136 (148)
T ss_dssp CCCCTTTCCSSCCGGGCT
T ss_pred CCcccccCCcCCEeccCc
Confidence 568999999999999997
No 25
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=88.04 E-value=0.12 Score=29.62 Aligned_cols=18 Identities=39% Similarity=0.870 Sum_probs=16.4
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
+.-|+.||..||...+|+
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp 63 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCP 63 (74)
T ss_dssp CCCCTTTCCTTSCGGGCT
T ss_pred CCccCCcCCcCCccCcCc
Confidence 468999999999999996
No 26
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=86.95 E-value=0.23 Score=30.27 Aligned_cols=18 Identities=33% Similarity=0.866 Sum_probs=16.7
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
...|++||..||...+|+
T Consensus 105 ~~~Cy~Cg~~GH~a~dCp 122 (124)
T 2lli_A 105 TIYCYNCGGKGHFGDDCK 122 (124)
T ss_dssp CCCTTTTSSSCTTTTTSC
T ss_pred CCCcCCCCCCCcCcccCc
Confidence 469999999999999997
No 27
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=85.53 E-value=0.25 Score=25.95 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=16.4
Q ss_pred ccccccccceecCCCcCC
Q 041609 53 PLKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~~C~ 70 (71)
..+|-.|-+.||...+|.
T Consensus 20 RpYCe~CEVFGH~t~eC~ 37 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCN 37 (42)
T ss_dssp CCEETTTTEESSCGGGCC
T ss_pred CcccccceecccccccCC
Confidence 568999999999999996
No 28
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=83.78 E-value=0.37 Score=29.35 Aligned_cols=17 Identities=24% Similarity=0.901 Sum_probs=14.1
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
..|+.|+..||...+|+
T Consensus 65 ~~C~~Cg~~GH~~~~Cp 81 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCP 81 (124)
T ss_dssp CSSSSSCSSCCCTTTCC
T ss_pred ccCCCCCcCCcchhhCC
Confidence 56888888888888886
No 29
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=64.84 E-value=2.5 Score=24.03 Aligned_cols=16 Identities=25% Similarity=0.629 Sum_probs=14.4
Q ss_pred cccccccceecCCCcCC
Q 041609 54 LKCIVCGNIGHDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iGH~~~~C~ 70 (71)
.||+.|+.--|. ..|.
T Consensus 59 ~FC~~C~~~wH~-~~C~ 74 (80)
T 2jmo_A 59 AFCRECKEAYHE-GECS 74 (80)
T ss_dssp CEETTTTEECCS-SCSS
T ss_pred eeccccCccccC-Cccc
Confidence 499999999999 8885
No 30
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=63.15 E-value=2.2 Score=23.41 Aligned_cols=11 Identities=36% Similarity=1.346 Sum_probs=9.1
Q ss_pred Cccccccccce
Q 041609 52 LPLKCIVCGNI 62 (71)
Q Consensus 52 LP~fC~~Cg~i 62 (71)
.|--||+||.+
T Consensus 2 iPVRCFTCGkv 12 (55)
T 1ef4_A 2 IPVRCLSCGKP 12 (55)
T ss_dssp CSSSCSCTTSC
T ss_pred CCeecCCCCCC
Confidence 58889999964
No 31
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=61.91 E-value=2.5 Score=23.98 Aligned_cols=11 Identities=36% Similarity=1.518 Sum_probs=9.1
Q ss_pred Cccccccccce
Q 041609 52 LPLKCIVCGNI 62 (71)
Q Consensus 52 LP~fC~~Cg~i 62 (71)
+|--||+||.+
T Consensus 3 IPVRCFTCGkv 13 (66)
T 4ayb_N 3 IPIRCFTCGSL 13 (66)
T ss_dssp CCSBCTTTCCB
T ss_pred CCcccCCCcHh
Confidence 58899999964
No 32
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.25 E-value=6.2 Score=22.44 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=14.6
Q ss_pred ccccccccee---cCCCcCC
Q 041609 54 LKCIVCGNIG---HDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iG---H~~~~C~ 70 (71)
.||+.|+..- |.-..|.
T Consensus 52 ~FC~~C~~~w~~~H~~~sC~ 71 (86)
T 2ct7_A 52 TFCVRCKRQWEEQHRGRSCE 71 (86)
T ss_dssp EECSSSCSBCCTTTTTSCHH
T ss_pred ccccccCCchhhcCCCCChH
Confidence 5999999999 9887774
No 33
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.44 E-value=25 Score=19.31 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=10.9
Q ss_pred EEeCCCccccccccce
Q 041609 47 VMYENLPLKCIVCGNI 62 (71)
Q Consensus 47 v~YE~LP~fC~~Cg~i 62 (71)
..|. .|.||.+|+.+
T Consensus 23 ~~f~-~pt~C~~C~~~ 37 (74)
T 2db6_A 23 HFFK-KPKFCDVCARM 37 (74)
T ss_dssp EECS-SCEECSSSCCE
T ss_pred eeCC-CCcCchhcChh
Confidence 3454 69999999764
No 34
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=39.82 E-value=14 Score=22.00 Aligned_cols=17 Identities=29% Similarity=0.798 Sum_probs=13.9
Q ss_pred EEEeCCCcc-ccccccce
Q 041609 46 KVMYENLPL-KCIVCGNI 62 (71)
Q Consensus 46 ~v~YE~LP~-fC~~Cg~i 62 (71)
.+.|++||. -|.+||..
T Consensus 57 t~sl~r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 57 TISLDRLPKKHCSTCGLF 74 (92)
T ss_dssp EEESSSSCCSCCTTTCSC
T ss_pred eeEeeeCCCCCCCCCCCC
Confidence 456699998 99999864
No 35
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=37.98 E-value=10 Score=18.97 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.7
Q ss_pred CCccccccccce
Q 041609 51 NLPLKCIVCGNI 62 (71)
Q Consensus 51 ~LP~fC~~Cg~i 62 (71)
.-|.+|.+|+.+
T Consensus 9 ~~pt~C~~C~~~ 20 (50)
T 1ptq_A 9 MSPTFCDHCGSL 20 (50)
T ss_dssp SSCCBCTTTCCB
T ss_pred CCCCCcCCCCce
Confidence 479999999863
No 36
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=34.10 E-value=14 Score=20.42 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=11.6
Q ss_pred EeCCCccccccccce
Q 041609 48 MYENLPLKCIVCGNI 62 (71)
Q Consensus 48 ~YE~LP~fC~~Cg~i 62 (71)
..-..|.||.+|+.+
T Consensus 30 ~~~~~pt~C~~C~~~ 44 (72)
T 2fnf_X 30 ALRGGPGWCDLCGRE 44 (72)
T ss_dssp CCCSSCCBCTTTSSB
T ss_pred ecCCCCcchhhhhHH
Confidence 345689999999863
No 37
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A
Probab=33.67 E-value=9.4 Score=23.92 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=20.6
Q ss_pred eeCC-CCCccceecc----cCcceEEEEEEeCCCc
Q 041609 24 VDLS-GPLPNSVMVE----LPDDCILVKVMYENLP 53 (71)
Q Consensus 24 iDl~-kpL~~~i~ve----~~g~~~~v~v~YE~LP 53 (71)
|||| ++.+..|--. ..| .+.|+||++|
T Consensus 91 LDLS~~~AF~~Ia~~g~G~~~G---~i~V~w~~V~ 122 (125)
T 1bw3_A 91 LDLDWDTVFTKIDTNGIGYQQG---HLNVNYQFVD 122 (125)
T ss_dssp CCSCSSSSHHHHCSSCHHHHHS---EEEEEEEEEC
T ss_pred CCCCCHHHHHHHhccCCcccCc---EEEEEEEEEe
Confidence 8999 9999998762 234 3688888876
No 38
>2h1t_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.80A {Pseudomonas aeruginosa} SCOP: b.178.1.1
Probab=33.55 E-value=12 Score=24.77 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=27.4
Q ss_pred EEEeeC-CCCCccceeccc----CcceEEEEEEeCCCccc
Q 041609 21 LVDVDL-SGPLPNSVMVEL----PDDCILVKVMYENLPLK 55 (71)
Q Consensus 21 ~V~iDl-~kpL~~~i~ve~----~g~~~~v~v~YE~LP~f 55 (71)
+++||| .-|+.+.+-|+| .|....+.|.|=.+|.+
T Consensus 100 ~~DVDl~~SPfTNTLPIRRL~L~~g~~~~i~vayV~~P~l 139 (188)
T 2h1t_A 100 CLDIDIWPSPFTNTFPIRRLGLADGQRAEIRALYIEAPAL 139 (188)
T ss_dssp CCEEEEETCGGGGHHHHHHHCCCTTCEEEEEEEEEETTTT
T ss_pred CEEEcceeCccccchhhhhcccccCCceEEEEEEEECCCc
Confidence 578888 789999999976 35566788888888764
No 39
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=33.05 E-value=13 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=10.6
Q ss_pred EeCCCccccccccce
Q 041609 48 MYENLPLKCIVCGNI 62 (71)
Q Consensus 48 ~YE~LP~fC~~Cg~i 62 (71)
.|. .|.||.+|+.+
T Consensus 10 ~~~-~pt~C~~C~~~ 23 (52)
T 1faq_A 10 TFL-KLAFCDICQKF 23 (52)
T ss_dssp CCS-SCEECTTSSSE
T ss_pred eCC-CCcCCCCcccc
Confidence 444 58999999875
No 40
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=32.65 E-value=15 Score=19.44 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=10.8
Q ss_pred eCCCccccccccce
Q 041609 49 YENLPLKCIVCGNI 62 (71)
Q Consensus 49 YE~LP~fC~~Cg~i 62 (71)
.=..|.||.+||.+
T Consensus 18 ~~~~pt~C~~C~~~ 31 (59)
T 1rfh_A 18 LRGGPGWCDLCGRE 31 (59)
T ss_dssp CSSCCEECTTTCSE
T ss_pred ccCCCeEchhcchh
Confidence 34679999999864
No 41
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=31.38 E-value=15 Score=18.25 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=8.8
Q ss_pred CCCccccccccc
Q 041609 50 ENLPLKCIVCGN 61 (71)
Q Consensus 50 E~LP~fC~~Cg~ 61 (71)
|.|..||..|+.
T Consensus 15 e~l~lfC~~~~~ 26 (50)
T 2yvr_A 15 EPLVLFCESCDT 26 (50)
T ss_dssp CBCCEEETTTTE
T ss_pred CCEEEEeCCCCE
Confidence 567778887764
No 42
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=30.63 E-value=18 Score=19.29 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=9.8
Q ss_pred CCccccccccce
Q 041609 51 NLPLKCIVCGNI 62 (71)
Q Consensus 51 ~LP~fC~~Cg~i 62 (71)
..|.||.+|+.+
T Consensus 21 ~~pt~C~~C~~~ 32 (65)
T 2enz_A 21 KSPTFCEHCGTL 32 (65)
T ss_dssp CSCCBCSSSCCB
T ss_pred CCCcCchhcChh
Confidence 469999999864
No 43
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=28.65 E-value=17 Score=22.26 Aligned_cols=17 Identities=41% Similarity=1.075 Sum_probs=14.2
Q ss_pred ccccccccee---cCCCcCC
Q 041609 54 LKCIVCGNIG---HDRTQCQ 70 (71)
Q Consensus 54 ~fC~~Cg~iG---H~~~~C~ 70 (71)
.-|-.||--| |+++.|+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP 91 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCP 91 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCT
T ss_pred ccCCCCCCcCCcccceecCC
Confidence 3688888888 9999887
No 44
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=28.53 E-value=38 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=14.3
Q ss_pred CcceEEEEEEeCCCccccccccc
Q 041609 39 PDDCILVKVMYENLPLKCIVCGN 61 (71)
Q Consensus 39 ~g~~~~v~v~YE~LP~fC~~Cg~ 61 (71)
.|.. +....=..|.||.+|+.
T Consensus 23 ~~H~--F~~~~~~~PT~Cd~C~~ 43 (84)
T 2row_A 23 KGHE--FIPTLYHFPTNCEACMK 43 (84)
T ss_dssp TTEE--EEEECCSSCEECSSSSS
T ss_pred CCcc--eEeEcCCCCcchhhcCH
Confidence 4444 34445668999999974
No 45
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=27.95 E-value=21 Score=18.48 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=12.1
Q ss_pred ccccccccceecCCC
Q 041609 53 PLKCIVCGNIGHDRT 67 (71)
Q Consensus 53 P~fC~~Cg~iGH~~~ 67 (71)
+.-|-.||.+|+-..
T Consensus 6 ~~~CE~CG~~g~~~~ 20 (43)
T 2w0t_A 6 PAVCEMCGIVGTREA 20 (43)
T ss_dssp EEECTTTCCEEETTT
T ss_pred eehhhhhcCcchhhh
Confidence 457999999998755
No 46
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=26.87 E-value=21 Score=18.50 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=8.7
Q ss_pred CCCccccccccc
Q 041609 50 ENLPLKCIVCGN 61 (71)
Q Consensus 50 E~LP~fC~~Cg~ 61 (71)
|.|..||..|+.
T Consensus 17 e~l~lfC~~d~~ 28 (64)
T 2d8u_A 17 EKINIYCLTCEV 28 (64)
T ss_dssp CCCCSEESSSCC
T ss_pred CccceEcCcCCc
Confidence 567778877764
No 47
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=26.63 E-value=20 Score=19.04 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.9
Q ss_pred CCccccccccce
Q 041609 51 NLPLKCIVCGNI 62 (71)
Q Consensus 51 ~LP~fC~~Cg~i 62 (71)
.-|.||.+|+.+
T Consensus 18 ~~pt~C~~C~~~ 29 (65)
T 3uej_A 18 MSPTFCDHCGSL 29 (65)
T ss_dssp SSCCBCTTTCCB
T ss_pred CCCCcccccChh
Confidence 479999999864
No 48
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.65 E-value=19 Score=18.81 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=9.7
Q ss_pred CCCccccccccc
Q 041609 50 ENLPLKCIVCGN 61 (71)
Q Consensus 50 E~LP~fC~~Cg~ 61 (71)
+++-.||..||.
T Consensus 16 ~~~~k~CP~CG~ 27 (50)
T 3j20_Y 16 IRKNKFCPRCGP 27 (50)
T ss_dssp ECSSEECSSSCS
T ss_pred EEecccCCCCCC
Confidence 357889999986
No 49
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=25.48 E-value=66 Score=20.19 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=20.4
Q ss_pred CcccceEEEEEEeeCCCCCccceecc
Q 041609 12 RTYGYYVRILVDVDLSGPLPNSVMVE 37 (71)
Q Consensus 12 ~~~g~yaRV~V~iDl~kpL~~~i~ve 37 (71)
-..|.=+.|-+++.++++|.+...++
T Consensus 29 ~~~g~~~ti~~~~~l~~~i~~g~k~~ 54 (164)
T 2ag4_A 29 IVVPGNVTLSVVGSTSVPLSSPLKVD 54 (164)
T ss_dssp EEESEEEEEEEEEEESSCBCSSCEEE
T ss_pred CCCCCceEEEEEEEEeeccCCCCEEE
Confidence 45677788999999999998876554
No 50
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=24.90 E-value=21 Score=17.97 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.4
Q ss_pred EeCCCccccccccc
Q 041609 48 MYENLPLKCIVCGN 61 (71)
Q Consensus 48 ~YE~LP~fC~~Cg~ 61 (71)
.|..-|.||..|+.
T Consensus 10 tysdcpgfcktcka 23 (41)
T 1bi6_H 10 TYSDCPGFCKTCKA 23 (41)
T ss_dssp CCSSCCTTCSSEEE
T ss_pred cccCCchHHHHHHH
Confidence 57788999999963
No 51
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.74 E-value=34 Score=21.18 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=8.6
Q ss_pred EeCCCcc--ccccccc
Q 041609 48 MYENLPL--KCIVCGN 61 (71)
Q Consensus 48 ~YE~LP~--fC~~Cg~ 61 (71)
.||..+. +|..||.
T Consensus 141 ~~~~~~~~~~Cp~CG~ 156 (165)
T 2lcq_A 141 KFSTLPPGGVCPDCGS 156 (165)
T ss_dssp EESSCCGGGBCTTTCC
T ss_pred cccCCCCCCcCCCCCC
Confidence 3454343 8888875
No 52
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=23.66 E-value=59 Score=19.26 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=17.0
Q ss_pred eEEEEEEeeCCCCCccceecccCc
Q 041609 17 YVRILVDVDLSGPLPNSVMVELPD 40 (71)
Q Consensus 17 yaRV~V~iDl~kpL~~~i~ve~~g 40 (71)
..||.|+.+...++.++|++...+
T Consensus 7 iIRVs~e~~~~Gn~YKSIlltsqD 30 (90)
T 1rlf_A 7 IIRVQMELGEDGSVYKSILVTSQD 30 (90)
T ss_dssp EEEEEECCSSSCCSCCEEEEETTC
T ss_pred EEEEEEEeCCCCceEEEEEEecCC
Confidence 356666644688999999997643
No 53
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.46 E-value=27 Score=19.50 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=10.8
Q ss_pred EeCCCccccccccce
Q 041609 48 MYENLPLKCIVCGNI 62 (71)
Q Consensus 48 ~YE~LP~fC~~Cg~i 62 (71)
.| ..|.||.+|+.+
T Consensus 24 ~~-~~pt~C~~C~~~ 37 (83)
T 2yuu_A 24 FF-GQPTFCSVCKDF 37 (83)
T ss_dssp CC-SSCCCCSSSCCC
T ss_pred eC-CCCcChhhcChh
Confidence 44 579999999863
No 54
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=23.18 E-value=55 Score=17.34 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=10.8
Q ss_pred EeCCCccccccccce
Q 041609 48 MYENLPLKCIVCGNI 62 (71)
Q Consensus 48 ~YE~LP~fC~~Cg~i 62 (71)
.|. .|.||.+|+.+
T Consensus 20 ~~~-~pt~C~~C~~~ 33 (66)
T 1y8f_A 20 TAT-TPTYCYECEGL 33 (66)
T ss_dssp ECS-SCCCCTTTCCC
T ss_pred eCC-CCcChhhcChh
Confidence 454 79999999763
No 55
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=23.02 E-value=23 Score=20.41 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=8.0
Q ss_pred Cccccccccc
Q 041609 52 LPLKCIVCGN 61 (71)
Q Consensus 52 LP~fC~~Cg~ 61 (71)
--.||..||.
T Consensus 29 ~k~FCp~CGn 38 (79)
T 2con_A 29 NRVFCGHCGN 38 (79)
T ss_dssp SCCSCSSSCC
T ss_pred ccccccccCc
Confidence 3469999996
No 56
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.60 E-value=30 Score=19.45 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=9.8
Q ss_pred CCccccccccce
Q 041609 51 NLPLKCIVCGNI 62 (71)
Q Consensus 51 ~LP~fC~~Cg~i 62 (71)
..|.||.+|+.+
T Consensus 26 ~~pt~C~~C~~~ 37 (85)
T 2eli_A 26 GSPTFCDHCGSL 37 (85)
T ss_dssp SSCCBCSSSCCB
T ss_pred CCCcCCcccCcc
Confidence 479999999863
No 57
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.05 E-value=60 Score=17.81 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=13.6
Q ss_pred CcceEEEEEEeCCCccccccccc
Q 041609 39 PDDCILVKVMYENLPLKCIVCGN 61 (71)
Q Consensus 39 ~g~~~~v~v~YE~LP~fC~~Cg~ 61 (71)
.+..|.. ..| ..|.||.+|+.
T Consensus 22 ~~H~F~~-~~f-~~pt~C~~C~~ 42 (77)
T 2enn_A 22 KCHEFTA-TFF-PQPTFCSVCHE 42 (77)
T ss_dssp SSCEEEE-ECC-SSCEECSSSCC
T ss_pred CCCccEE-EcC-CCCcCccccCh
Confidence 3444432 345 57999999976
No 58
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=21.79 E-value=34 Score=16.22 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=7.5
Q ss_pred CCCccccccccc
Q 041609 50 ENLPLKCIVCGN 61 (71)
Q Consensus 50 E~LP~fC~~Cg~ 61 (71)
|.|..||..|+.
T Consensus 11 e~l~lfC~~d~~ 22 (42)
T 1fre_A 11 ERLKLYCKDDGT 22 (42)
T ss_dssp SSCCCCCCSSSS
T ss_pred CeeeEEeCCCCe
Confidence 556677766553
No 59
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.60 E-value=29 Score=13.84 Aligned_cols=9 Identities=22% Similarity=0.774 Sum_probs=6.2
Q ss_pred ccccccccc
Q 041609 53 PLKCIVCGN 61 (71)
Q Consensus 53 P~fC~~Cg~ 61 (71)
|.-|..|+.
T Consensus 2 ~~~C~~C~k 10 (30)
T 1paa_A 2 AYACGLCNR 10 (30)
T ss_dssp CSBCTTTCC
T ss_pred CcCCcccCc
Confidence 556888875
No 60
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.60 E-value=28 Score=13.53 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=5.2
Q ss_pred ccccccccc
Q 041609 53 PLKCIVCGN 61 (71)
Q Consensus 53 P~fC~~Cg~ 61 (71)
|.-|..|+.
T Consensus 1 ~~~C~~C~k 9 (27)
T 1znf_A 1 XYKCGLCER 9 (27)
T ss_dssp -CBCSSSCC
T ss_pred CccCCCCCC
Confidence 345777764
No 61
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=21.01 E-value=67 Score=18.14 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=19.1
Q ss_pred CCCCccc-----eecccCcceEEEEEEeCCCcccccccccee
Q 041609 27 SGPLPNS-----VMVELPDDCILVKVMYENLPLKCIVCGNIG 63 (71)
Q Consensus 27 ~kpL~~~-----i~ve~~g~~~~v~v~YE~LP~fC~~Cg~iG 63 (71)
+.|++.+ ++|--++-.....+.|-++-..|.+||..+
T Consensus 24 ~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyN 65 (79)
T 2k2d_A 24 QTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYN 65 (79)
T ss_dssp ---------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCC
T ss_pred hCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcC
Confidence 4666642 223334323345788888888899998764
No 62
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=20.77 E-value=8.6 Score=25.45 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=19.7
Q ss_pred EeeCCCCCccceecccCcceEEEEEEeCCCc
Q 041609 23 DVDLSGPLPNSVMVELPDDCILVKVMYENLP 53 (71)
Q Consensus 23 ~iDl~kpL~~~i~ve~~g~~~~v~v~YE~LP 53 (71)
.+|||++.+..+--...|. +.|+|+++|
T Consensus 80 ~~DLS~~aF~~la~~~~G~---i~v~~~~V~ 107 (208)
T 3d30_A 80 ALDLSPNAFRKIGNMKDGK---INIKWRVVK 107 (208)
T ss_dssp CEEECHHHHHHHSCGGGSS---EEEEEEEEC
T ss_pred eEECCHHHHHHhcccCCCE---EEEEEEEeC
Confidence 4788888888875443442 578888876
No 63
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.66 E-value=32 Score=13.52 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=6.3
Q ss_pred ccccccccc
Q 041609 53 PLKCIVCGN 61 (71)
Q Consensus 53 P~fC~~Cg~ 61 (71)
|.-|..|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 1ard_A 2 SFVCEVCTR 10 (29)
T ss_dssp CCBCTTTCC
T ss_pred CeECCCCCc
Confidence 556888875
No 64
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.58 E-value=29 Score=13.70 Aligned_cols=9 Identities=33% Similarity=1.176 Sum_probs=6.7
Q ss_pred ccccccccc
Q 041609 53 PLKCIVCGN 61 (71)
Q Consensus 53 P~fC~~Cg~ 61 (71)
|.-|..||.
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvh_A 3 PFSCSLCPQ 11 (27)
T ss_dssp CEECSSSSC
T ss_pred CccCCCcCh
Confidence 566888875
No 65
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=20.56 E-value=34 Score=17.11 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=7.9
Q ss_pred CCCccccccccc
Q 041609 50 ENLPLKCIVCGN 61 (71)
Q Consensus 50 E~LP~fC~~Cg~ 61 (71)
|.|..||..|+.
T Consensus 16 e~l~lfC~~d~~ 27 (53)
T 2did_A 16 EALSLFCYEDQE 27 (53)
T ss_dssp CBCCEEESSSCS
T ss_pred CeeeEEeCCCCe
Confidence 456677776664
No 66
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.51 E-value=69 Score=18.55 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=16.0
Q ss_pred eecccCcceEEEEEEeCCCc-cccccccceecC
Q 041609 34 VMVELPDDCILVKVMYENLP-LKCIVCGNIGHD 65 (71)
Q Consensus 34 i~ve~~g~~~~v~v~YE~LP-~fC~~Cg~iGH~ 65 (71)
+.++.+|.. +.++.+| .+|..||..-.+
T Consensus 20 ~~~~~kg~~----~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 20 IPYTFRGRK----TVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp EEEEETTEE----EEEEEEEEEEESSSSCEECC
T ss_pred EEEEECCEE----EEECCCceeECCCCCCEeec
Confidence 344556644 3444422 489999976544
No 67
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.32 E-value=36 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=10.2
Q ss_pred CCCccccccccc
Q 041609 50 ENLPLKCIVCGN 61 (71)
Q Consensus 50 E~LP~fC~~Cg~ 61 (71)
+++-.||..||.
T Consensus 15 ~~~~~fCPkCG~ 26 (55)
T 2k4x_A 15 VRKHRFCPRCGP 26 (55)
T ss_dssp CCSSCCCTTTTT
T ss_pred EEccccCcCCCC
Confidence 567889999996
Done!