BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041611
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 11/151 (7%)
Query: 1 MSSSNTRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPA 60
M + R H+++ PYP QGH+ PL L L L+ IT + T N L L P
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRL--LKSRGPK 58
Query: 61 IKTLVLPFPSHPSIPPGIENVRELGNRGN------YPIMTALGKLYDPIIDWFRSQAN-P 113
F + SIP G+ + G+ + K Y ++ N P
Sbjct: 59 AFDGFTDF-NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVP 117
Query: 114 PVAIL-SDFFLGWTLKLAHQLNIVRIAFFSS 143
PV L SD + +T++ A + + + +FSS
Sbjct: 118 PVTCLVSDCCMSFTIQAAEEFELPNVLYFSS 148
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 4 SNTRTTHILIFPYPAQGHMLPLLDLTHQL-SLKDLDITILVTPKNLPILSP--LLDAHP- 59
++T H+ I P P GH++PL++ +L L L +T ++ + P + +LD+ P
Sbjct: 2 EESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPS 61
Query: 60 AIKTLVLP 67
+I ++ LP
Sbjct: 62 SISSVFLP 69
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 105/271 (38%), Gaps = 51/271 (18%)
Query: 1 MSSSNTRTTHILIF-PYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP-------ILS 52
MS S+ LIF P P GH+ L+ L+ D ++ I V P +
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 53 PLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYDPIIDWFRS-QA 111
+L + P I+ + LP PP +EL + I+T L L + ++ +
Sbjct: 61 SVLASQPQIQLIDLP---EVEPPP-----QELLKSPEFYILTFLESLIPHVKATIKTILS 112
Query: 112 NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGW----LLASVADYCWHHIGDVKSLD-- 165
N V ++ DFF + + ++ I F +S L+ S+ + + D D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQ 172
Query: 166 VVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDG------NLAN--TSSWGCVFNS 217
++ P + +PS V P++ F KDG LA + G + N+
Sbjct: 173 LLNIPGI-------SNQVPSNVL------PDACFNKDGGYIAYYKLAERFRDTKGIIVNT 219
Query: 218 FDALEGEYSDYLKRKMGHDR----VFGVGPL 244
F LE D L HD ++ VGPL
Sbjct: 220 FSDLEQSSIDAL---YDHDEKIPPIYAVGPL 247
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 105/271 (38%), Gaps = 51/271 (18%)
Query: 1 MSSSNTRTTHILIF-PYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP-------ILS 52
MS S+ LIF P P GH+ L+ L+ D ++ I V P +
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 53 PLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYDPIIDWFRS-QA 111
+L + P I+ + LP PP +EL + I+T L L + ++ +
Sbjct: 61 SVLASQPQIQLIDLP---EVEPPP-----QELLKSPEFYILTFLESLIPHVKATIKTILS 112
Query: 112 NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGW----LLASVADYCWHHIGDVKSLD-- 165
N V ++ DFF + + ++ I F +S L+ S+ + + D D
Sbjct: 113 NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQ 172
Query: 166 VVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDG------NLAN--TSSWGCVFNS 217
++ P + +PS V P++ F KDG LA + G + N+
Sbjct: 173 LLNIPGI-------SNQVPSNVL------PDACFNKDGGYIAYYKLAERFRDTKGIIVNT 219
Query: 218 FDALEGEYSDYLKRKMGHDR----VFGVGPL 244
F LE D L HD ++ VGPL
Sbjct: 220 FSDLEQSSIDAL---YDHDEKIPPIYAVGPL 247
>pdb|3U52|C Chain C, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|D Chain D, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 333
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 99 LYDPIIDWFRSQANPPVAILSDFFLGW 125
+YD + WF SQ V++L++F W
Sbjct: 230 VYDKMDQWFESQGAEDVSMLTEFMRDW 256
>pdb|2INP|C Chain C, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|D Chain D, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 328
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 99 LYDPIIDWFRSQANPPVAILSDFFLGW 125
+YD + WF SQ V++L++F W
Sbjct: 227 VYDKMDQWFESQGAEDVSMLTEFMRDW 253
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 60 AIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYD 101
AI V+P PS+ G+++ E G YP++ KLYD
Sbjct: 527 AIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYD 568
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 60 AIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYD 101
AI V+P PS+ G+++ E G YP++ KLYD
Sbjct: 527 AIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYD 568
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 60 AIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYD 101
AI V+P PS+ G+++ E G YP++ KLYD
Sbjct: 527 AIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYD 568
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 60 AIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYD 101
AI V+P PS+ G+++ E G YP++ KLYD
Sbjct: 527 AIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYD 568
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 5 NTRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTP 45
+ R HIL GH+ P L L +L+ + IT + TP
Sbjct: 1 HXRQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTP 41
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 3 SSNTRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTP 45
++ T HI +F A GH+ P L++ +L + +T + P
Sbjct: 2 TTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPP 44
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 47 NLPILSPLLDAHPAIKTLVLPFPSHPSIPPGI-ENVRELGNRGNYPIMTALGKLYD 101
NL + D +P + L P HP I + +L RG Y + TA GKL D
Sbjct: 235 NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 290
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 47 NLPILSPLLDAHPAIKTLVLPFPSHPSIPPGI-ENVRELGNRGNYPIMTALGKLYD 101
NL + D +P + L P HP I + +L RG Y + TA GKL D
Sbjct: 234 NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 289
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 47 NLPILSPLLDAHPAIKTLVLPFPSHPSIPPGI-ENVRELGNRGNYPIMTALGKLYD 101
NL + D +P + L P HP I + +L RG Y + TA GKL D
Sbjct: 235 NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD 290
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 424
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 3 SSNTRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIK 62
S++ HI F P GH+ P L + +L + ++ +T A P +
Sbjct: 7 SASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAIT-DEFAAQVKAAGATPVVY 65
Query: 63 TLVLPFPSHPS 73
+LP S+P
Sbjct: 66 DSILPKESNPE 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,045,008
Number of Sequences: 62578
Number of extensions: 336820
Number of successful extensions: 600
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 17
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)