Query 041611
Match_columns 249
No_of_seqs 213 out of 1408
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.9E-47 1.7E-51 342.7 24.8 243 1-246 1-251 (477)
2 PLN02670 transferase, transfer 100.0 3.9E-44 8.4E-49 323.6 23.5 238 6-246 4-249 (472)
3 PLN02534 UDP-glycosyltransfera 100.0 4.3E-44 9.2E-49 324.8 23.8 236 6-246 6-251 (491)
4 PLN02555 limonoid glucosyltran 100.0 4.6E-43 1E-47 317.5 23.1 230 1-246 1-247 (480)
5 PLN02173 UDP-glucosyl transfer 100.0 2.9E-42 6.3E-47 310.0 22.8 219 7-246 4-227 (449)
6 PLN02992 coniferyl-alcohol glu 100.0 2.8E-42 6E-47 311.9 22.7 228 7-247 4-243 (481)
7 PLN02764 glycosyltransferase f 100.0 1.5E-41 3.2E-46 304.9 23.5 226 7-246 4-235 (453)
8 PLN02152 indole-3-acetate beta 100.0 8.7E-42 1.9E-46 307.4 22.0 221 7-246 2-229 (455)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 4.6E-41 9.9E-46 303.1 23.0 225 1-246 1-239 (451)
10 PLN03015 UDP-glucosyl transfer 100.0 8.1E-41 1.8E-45 301.0 23.5 226 7-246 2-246 (470)
11 PLN00414 glycosyltransferase f 100.0 5.3E-41 1.2E-45 302.3 22.3 223 7-246 3-228 (446)
12 PLN02562 UDP-glycosyltransfera 100.0 1E-40 2.2E-45 301.3 23.0 225 7-246 5-245 (448)
13 PLN02208 glycosyltransferase f 100.0 7.2E-41 1.6E-45 301.1 21.5 225 7-246 3-229 (442)
14 PLN03004 UDP-glycosyltransfera 100.0 1.2E-40 2.5E-45 299.8 22.3 229 7-246 2-245 (451)
15 PLN02210 UDP-glucosyl transfer 100.0 2.9E-40 6.3E-45 298.7 22.8 225 1-246 1-233 (456)
16 PLN00164 glucosyltransferase; 100.0 2.9E-40 6.3E-45 300.4 22.2 224 7-246 2-248 (480)
17 PLN02448 UDP-glycosyltransfera 100.0 1.1E-38 2.3E-43 289.5 23.3 228 3-246 5-244 (459)
18 PLN03007 UDP-glucosyltransfera 100.0 4.2E-38 9E-43 287.1 22.8 234 6-246 3-253 (482)
19 PLN02167 UDP-glycosyltransfera 100.0 3.7E-38 8.1E-43 286.8 22.2 228 7-246 2-253 (475)
20 PLN02207 UDP-glycosyltransfera 100.0 1.8E-37 3.9E-42 280.0 22.7 227 7-246 2-248 (468)
21 PLN02554 UDP-glycosyltransfera 100.0 1.3E-37 2.9E-42 283.6 21.3 221 8-245 2-247 (481)
22 KOG1192 UDP-glucuronosyl and U 99.6 2.1E-16 4.6E-21 145.2 -0.3 235 8-247 5-256 (496)
23 cd03784 GT1_Gtf_like This fami 99.6 2.4E-15 5.2E-20 134.6 6.1 126 9-145 1-136 (401)
24 TIGR01426 MGT glycosyltransfer 99.5 3.4E-14 7.3E-19 127.0 7.6 121 14-143 1-122 (392)
25 PF03033 Glyco_transf_28: Glyc 99.2 6E-12 1.3E-16 96.1 2.1 126 11-145 1-132 (139)
26 PHA03392 egt ecdysteroid UDP-g 98.6 1.9E-07 4.1E-12 86.3 8.5 134 8-145 20-169 (507)
27 COG1819 Glycosyl transferases, 98.4 4.6E-07 1E-11 81.5 4.9 56 8-68 1-56 (406)
28 PF13528 Glyco_trans_1_3: Glyc 98.3 7.8E-06 1.7E-10 70.8 10.1 118 10-146 2-126 (318)
29 PF00201 UDPGT: UDP-glucoronos 98.2 1E-05 2.3E-10 74.6 11.0 55 10-68 2-56 (500)
30 TIGR00661 MJ1255 conserved hyp 98.1 1.9E-05 4.1E-10 68.9 9.7 115 13-144 5-123 (321)
31 PRK12446 undecaprenyldiphospho 97.7 0.00071 1.5E-08 59.9 12.7 118 10-144 3-124 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.1 0.017 3.6E-07 51.3 13.1 118 10-145 2-125 (357)
33 cd03785 GT1_MurG MurG is an N- 96.9 0.022 4.7E-07 49.7 12.4 114 10-140 1-118 (350)
34 PRK00726 murG undecaprenyldiph 96.8 0.031 6.7E-07 49.1 12.8 115 9-140 2-120 (357)
35 TIGR01133 murG undecaprenyldip 96.7 0.04 8.7E-07 48.0 12.6 114 10-140 2-119 (348)
36 TIGR00215 lpxB lipid-A-disacch 96.2 0.016 3.5E-07 51.9 7.3 111 9-140 6-119 (385)
37 cd03818 GT1_ExpC_like This fam 96.1 0.13 2.9E-06 45.8 12.6 101 24-141 12-116 (396)
38 cd03816 GT1_ALG1_like This fam 95.4 0.26 5.7E-06 44.5 11.6 58 8-67 3-60 (415)
39 PF13579 Glyco_trans_4_4: Glyc 95.4 0.051 1.1E-06 41.0 6.1 93 25-141 7-103 (160)
40 TIGR03590 PseG pseudaminic aci 95.2 0.14 3E-06 43.8 8.8 94 17-141 12-110 (279)
41 PRK00025 lpxB lipid-A-disaccha 94.7 0.12 2.6E-06 45.7 7.5 111 9-142 2-117 (380)
42 cd03823 GT1_ExpE7_like This fa 94.6 0.6 1.3E-05 39.9 11.3 109 19-141 15-127 (359)
43 COG4671 Predicted glycosyl tra 94.5 0.37 8E-06 42.3 9.3 58 7-68 8-69 (400)
44 cd03800 GT1_Sucrose_synthase T 94.3 0.48 1E-05 41.7 10.3 108 19-140 21-130 (398)
45 PF13477 Glyco_trans_4_2: Glyc 94.2 0.7 1.5E-05 34.4 9.7 99 11-139 2-104 (139)
46 cd04962 GT1_like_5 This family 94.0 0.89 1.9E-05 39.6 11.2 37 10-46 2-39 (371)
47 cd03814 GT1_like_2 This family 93.6 0.77 1.7E-05 39.4 10.1 29 19-47 14-42 (364)
48 cd03794 GT1_wbuB_like This fam 93.3 1.6 3.5E-05 37.4 11.6 29 19-47 14-42 (394)
49 PLN02871 UDP-sulfoquinovose:DA 93.3 1.7 3.7E-05 39.8 12.1 111 6-140 56-174 (465)
50 PRK10307 putative glycosyl tra 93.2 1.6 3.5E-05 39.0 11.7 22 25-46 21-42 (412)
51 PLN00142 sucrose synthase 92.5 1.6 3.4E-05 42.9 11.1 107 27-142 319-439 (815)
52 TIGR02470 sucr_synth sucrose s 92.3 4.4 9.6E-05 39.7 13.8 115 19-141 279-416 (784)
53 cd03808 GT1_cap1E_like This fa 91.2 3.1 6.7E-05 35.2 10.6 107 11-141 2-110 (359)
54 cd03817 GT1_UGDG_like This fam 91.0 2.7 5.8E-05 35.9 10.2 33 15-47 10-42 (374)
55 TIGR02472 sucr_P_syn_N sucrose 90.8 4.2 9.1E-05 36.9 11.5 109 21-142 28-145 (439)
56 TIGR02468 sucrsPsyn_pln sucros 89.9 6.5 0.00014 39.8 12.6 27 20-46 196-224 (1050)
57 TIGR03449 mycothiol_MshA UDP-N 89.7 6.5 0.00014 34.9 11.7 111 18-142 19-132 (405)
58 cd03796 GT1_PIG-A_like This fa 89.2 4.6 0.0001 36.0 10.4 101 20-140 15-119 (398)
59 PF12000 Glyco_trans_4_3: Gkyc 87.3 13 0.00028 29.4 10.6 91 34-141 1-95 (171)
60 PF04007 DUF354: Protein of un 87.2 6.7 0.00015 34.5 9.7 106 21-148 12-117 (335)
61 cd03801 GT1_YqgM_like This fam 84.6 14 0.0003 31.1 10.5 102 19-143 14-117 (374)
62 cd03820 GT1_amsD_like This fam 83.8 15 0.00033 30.7 10.4 29 19-47 13-41 (348)
63 cd03819 GT1_WavL_like This fam 83.8 8.3 0.00018 33.1 8.8 97 20-143 11-110 (355)
64 cd03802 GT1_AviGT4_like This f 83.5 18 0.00038 30.7 10.7 27 20-46 20-46 (335)
65 PLN02275 transferase, transfer 83.0 32 0.0007 30.3 12.6 57 7-67 5-62 (371)
66 COG0496 SurE Predicted acid ph 82.5 14 0.0003 31.2 9.0 25 25-50 16-40 (252)
67 cd04955 GT1_like_6 This family 82.3 24 0.00052 30.3 11.1 45 20-67 16-60 (363)
68 PF13439 Glyco_transf_4: Glyco 80.6 1.8 4E-05 32.9 3.1 28 20-47 13-40 (177)
69 COG3980 spsG Spore coat polysa 80.4 1.8 3.8E-05 37.0 3.1 40 10-49 2-45 (318)
70 PRK02261 methylaspartate mutas 78.8 4.4 9.5E-05 30.7 4.6 44 7-50 2-45 (137)
71 cd02067 B12-binding B12 bindin 77.5 4.2 9.2E-05 29.6 4.1 38 10-47 1-38 (119)
72 PRK13609 diacylglycerol glucos 76.7 4.3 9.2E-05 35.9 4.7 37 8-44 4-41 (380)
73 PRK13931 stationary phase surv 76.2 39 0.00084 28.7 10.0 27 25-51 16-45 (261)
74 cd03798 GT1_wlbH_like This fam 75.8 40 0.00087 28.3 10.4 30 18-47 13-42 (377)
75 PRK05749 3-deoxy-D-manno-octul 75.5 13 0.00028 33.5 7.5 99 10-141 51-154 (425)
76 PRK13934 stationary phase surv 72.4 43 0.00093 28.5 9.3 25 25-50 16-40 (266)
77 cd03805 GT1_ALG2_like This fam 71.3 7 0.00015 34.3 4.7 37 10-46 2-40 (392)
78 cd03821 GT1_Bme6_like This fam 70.1 7.8 0.00017 32.9 4.6 30 18-47 13-42 (375)
79 cd03812 GT1_CapH_like This fam 69.8 37 0.00079 29.1 8.8 31 17-47 10-40 (358)
80 cd04951 GT1_WbdM_like This fam 68.9 6 0.00013 34.0 3.6 28 18-45 11-38 (360)
81 PRK00346 surE 5'(3')-nucleotid 68.7 64 0.0014 27.2 9.6 25 25-50 16-40 (250)
82 cd03806 GT1_ALG11_like This fa 67.0 52 0.0011 29.7 9.5 109 23-143 18-138 (419)
83 COG1435 Tdk Thymidine kinase [ 65.0 74 0.0016 25.8 8.7 35 14-48 10-44 (201)
84 PF02310 B12-binding: B12 bind 62.9 16 0.00035 26.3 4.5 37 10-46 2-38 (121)
85 PF07894 DUF1669: Protein of u 62.7 14 0.0003 31.7 4.5 46 98-144 134-184 (284)
86 cd03807 GT1_WbnK_like This fam 62.2 93 0.002 26.0 10.5 32 16-47 9-40 (365)
87 TIGR03568 NeuC_NnaA UDP-N-acet 62.0 73 0.0016 28.2 9.3 44 98-143 80-126 (365)
88 cd03825 GT1_wcfI_like This fam 60.9 14 0.0003 31.8 4.4 38 10-47 2-41 (365)
89 cd03795 GT1_like_4 This family 60.7 16 0.00035 31.2 4.8 30 18-47 13-42 (357)
90 TIGR02853 spore_dpaA dipicolin 59.9 41 0.0009 28.8 7.1 20 26-45 14-33 (287)
91 cd02070 corrinoid_protein_B12- 59.7 17 0.00037 29.3 4.5 42 8-49 82-123 (201)
92 cd01635 Glycosyltransferase_GT 59.6 13 0.00029 29.1 3.9 26 18-43 12-37 (229)
93 COG1519 KdtA 3-deoxy-D-manno-o 59.0 87 0.0019 28.5 9.0 100 10-142 50-154 (419)
94 TIGR00715 precor6x_red precorr 58.6 1E+02 0.0023 25.9 9.1 23 25-47 12-34 (256)
95 TIGR02370 pyl_corrinoid methyl 57.8 19 0.00042 29.0 4.4 44 7-50 83-126 (197)
96 cd02071 MM_CoA_mut_B12_BD meth 56.6 22 0.00048 26.1 4.3 40 10-49 1-40 (122)
97 TIGR03088 stp2 sugar transfera 56.6 1.3E+02 0.0027 26.2 9.8 104 9-139 2-108 (374)
98 PF09314 DUF1972: Domain of un 56.5 24 0.00053 28.2 4.7 43 23-68 21-63 (185)
99 PF08660 Alg14: Oligosaccharid 54.4 1E+02 0.0023 24.1 8.6 29 17-45 6-35 (170)
100 cd03786 GT1_UDP-GlcNAc_2-Epime 54.3 78 0.0017 27.4 8.1 39 101-141 78-119 (363)
101 PRK00654 glgA glycogen synthas 54.1 20 0.00044 32.8 4.5 26 20-45 18-43 (466)
102 KOG2941 Beta-1,4-mannosyltrans 53.5 44 0.00095 29.8 6.0 60 6-69 10-71 (444)
103 PF02441 Flavoprotein: Flavopr 52.9 19 0.0004 26.7 3.4 41 10-51 2-42 (129)
104 cd03811 GT1_WabH_like This fam 52.4 27 0.00058 29.2 4.7 30 18-47 11-40 (353)
105 PF04244 DPRP: Deoxyribodipyri 52.0 15 0.00032 30.4 2.9 26 21-46 47-72 (224)
106 PF12146 Hydrolase_4: Putative 51.2 29 0.00063 23.4 3.8 34 9-42 16-49 (79)
107 cd02069 methionine_synthase_B1 51.2 29 0.00062 28.4 4.5 44 7-50 87-130 (213)
108 cd01018 ZntC Metal binding pro 49.0 69 0.0015 27.0 6.6 40 113-152 217-258 (266)
109 COG0052 RpsB Ribosomal protein 47.9 39 0.00084 28.4 4.7 32 113-144 156-189 (252)
110 PRK06321 replicative DNA helic 47.8 80 0.0017 29.2 7.3 40 11-50 229-269 (472)
111 PLN02846 digalactosyldiacylgly 47.7 29 0.00063 32.0 4.3 40 7-46 3-47 (462)
112 cd03791 GT1_Glycogen_synthase_ 47.1 15 0.00033 33.4 2.5 24 23-46 20-43 (476)
113 COG1703 ArgK Putative periplas 46.9 45 0.00097 29.0 5.0 44 6-49 48-92 (323)
114 PF04127 DFP: DNA / pantothena 46.5 19 0.00041 28.8 2.7 21 26-46 33-53 (185)
115 PF08026 Antimicrobial_5: Bee 46.5 3 6.6E-05 23.4 -1.3 23 14-36 16-38 (39)
116 PRK01021 lpxB lipid-A-disaccha 45.8 1.9E+02 0.004 27.9 9.4 30 113-142 310-344 (608)
117 COG1817 Uncharacterized protei 44.8 2.2E+02 0.0047 25.0 8.9 103 21-146 12-116 (346)
118 PF08323 Glyco_transf_5: Starc 44.6 16 0.00034 30.5 2.0 24 23-46 20-43 (245)
119 PF00201 UDPGT: UDP-glucoronos 44.5 1.4 2.9E-05 40.7 -4.9 10 236-245 246-255 (500)
120 PF06506 PrpR_N: Propionate ca 44.0 53 0.0012 25.7 4.9 31 113-146 125-155 (176)
121 PRK09165 replicative DNA helic 43.7 67 0.0015 29.9 6.2 41 11-51 220-275 (497)
122 PF00919 UPF0004: Uncharacteri 43.5 37 0.00081 24.0 3.5 26 207-232 34-62 (98)
123 COG0162 TyrS Tyrosyl-tRNA synt 43.2 24 0.00053 31.9 3.1 25 20-45 49-73 (401)
124 COG2185 Sbm Methylmalonyl-CoA 43.2 44 0.00094 25.6 4.0 40 7-46 11-50 (143)
125 PF07355 GRDB: Glycine/sarcosi 42.9 59 0.0013 28.7 5.3 44 95-140 64-117 (349)
126 PF00070 Pyr_redox: Pyridine n 41.6 35 0.00076 22.6 3.1 23 24-46 10-32 (80)
127 PRK07773 replicative DNA helic 41.6 83 0.0018 31.7 6.8 40 11-50 220-260 (886)
128 PRK14089 ipid-A-disaccharide s 41.3 93 0.002 27.5 6.4 42 101-143 65-111 (347)
129 PF13450 NAD_binding_8: NAD(P) 40.5 32 0.00069 22.4 2.6 20 26-45 9-28 (68)
130 PF01975 SurE: Survival protei 40.5 48 0.001 26.7 4.2 26 25-50 16-41 (196)
131 PF06925 MGDG_synth: Monogalac 39.6 1.1E+02 0.0023 23.7 6.0 44 98-143 76-125 (169)
132 TIGR03492 conserved hypothetic 38.7 1.6E+02 0.0034 26.5 7.6 25 23-47 11-40 (396)
133 TIGR02095 glgA glycogen/starch 38.4 25 0.00055 32.1 2.6 27 20-46 18-44 (473)
134 cd01981 Pchlide_reductase_B Pc 37.6 60 0.0013 29.5 4.8 25 113-140 370-394 (430)
135 PRK05986 cob(I)alamin adenolsy 37.4 67 0.0014 25.9 4.5 37 7-43 21-57 (191)
136 PF04413 Glycos_transf_N: 3-De 37.1 1.1E+02 0.0024 24.3 5.7 100 10-142 22-126 (186)
137 PRK08305 spoVFB dipicolinate s 35.5 47 0.001 26.9 3.3 39 9-48 6-45 (196)
138 PF02571 CbiJ: Precorrin-6x re 35.5 79 0.0017 26.5 4.8 17 26-43 13-29 (249)
139 PF08897 DUF1841: Domain of un 35.0 27 0.00059 26.5 1.7 19 16-34 56-74 (137)
140 TIGR00236 wecB UDP-N-acetylglu 34.8 91 0.002 27.2 5.4 107 15-140 6-116 (365)
141 COG4081 Uncharacterized protei 34.7 37 0.0008 25.5 2.3 37 11-47 6-43 (148)
142 TIGR01917 gly_red_sel_B glycin 34.3 93 0.002 28.3 5.3 44 96-141 61-114 (431)
143 TIGR02193 heptsyl_trn_I lipopo 34.2 60 0.0013 27.8 4.1 54 10-67 1-57 (319)
144 TIGR01918 various_sel_PB selen 34.2 95 0.0021 28.3 5.3 44 96-141 61-114 (431)
145 PRK09620 hypothetical protein; 33.2 43 0.00094 27.7 2.9 27 17-45 26-52 (229)
146 PRK12311 rpsB 30S ribosomal pr 33.1 28 0.00061 30.5 1.8 34 113-146 152-187 (326)
147 COG1797 CobB Cobyrinic acid a, 32.8 2.9E+02 0.0064 25.4 8.1 30 12-41 5-34 (451)
148 PTZ00445 p36-lilke protein; Pr 32.6 43 0.00094 27.5 2.7 26 20-45 74-100 (219)
149 TIGR00234 tyrS tyrosyl-tRNA sy 32.4 40 0.00087 30.2 2.7 25 20-45 47-71 (377)
150 COG0299 PurN Folate-dependent 32.3 79 0.0017 25.6 4.1 31 113-143 29-59 (200)
151 PF10087 DUF2325: Uncharacteri 32.2 99 0.0021 21.5 4.3 37 113-149 48-90 (97)
152 cd02065 B12-binding_like B12 b 32.1 86 0.0019 22.4 4.1 37 10-46 1-37 (125)
153 PF02603 Hpr_kinase_N: HPr Ser 32.1 91 0.002 23.1 4.2 43 100-144 71-115 (127)
154 PF00391 PEP-utilizers: PEP-ut 32.0 79 0.0017 21.2 3.6 30 113-142 30-61 (80)
155 PF01555 N6_N4_Mtase: DNA meth 31.9 71 0.0015 25.4 4.0 45 100-145 178-224 (231)
156 PRK07313 phosphopantothenoylcy 31.7 42 0.00092 26.7 2.5 43 9-52 2-44 (182)
157 COG1484 DnaC DNA replication p 31.3 37 0.00081 28.5 2.2 46 8-53 105-150 (254)
158 PF03720 UDPG_MGDP_dh_C: UDP-g 31.1 56 0.0012 23.2 2.9 26 23-48 17-42 (106)
159 cd02034 CooC The accessory pro 31.1 1.3E+02 0.0028 21.8 4.9 37 10-46 1-37 (116)
160 CHL00076 chlB photochlorophyll 31.0 82 0.0018 29.5 4.6 34 103-141 366-399 (513)
161 PF13378 MR_MLE_C: Enolase C-t 30.0 2E+02 0.0043 20.2 5.8 53 101-155 8-67 (111)
162 COG1255 Uncharacterized protei 29.9 59 0.0013 24.0 2.7 20 25-44 25-44 (129)
163 PRK06732 phosphopantothenate-- 29.3 50 0.0011 27.3 2.6 31 13-45 19-49 (229)
164 PF01316 Arg_repressor: Argini 28.9 38 0.00082 22.5 1.5 18 26-43 23-40 (70)
165 cd00561 CobA_CobO_BtuR ATP:cor 28.8 2.8E+02 0.006 21.5 10.0 33 10-42 4-36 (159)
166 PF09001 DUF1890: Domain of un 28.7 40 0.00086 25.6 1.7 26 24-49 15-40 (139)
167 PF07801 DUF1647: Protein of u 28.5 1.3E+02 0.0029 23.0 4.5 62 7-68 58-121 (142)
168 TIGR01278 DPOR_BchB light-inde 28.4 1E+02 0.0022 28.9 4.8 33 103-140 356-388 (511)
169 PRK13604 luxD acyl transferase 28.3 1.4E+02 0.0031 25.9 5.3 34 10-43 38-71 (307)
170 PF02350 Epimerase_2: UDP-N-ac 27.9 99 0.0022 27.2 4.4 44 98-143 54-100 (346)
171 cd00861 ProRS_anticodon_short 27.9 1E+02 0.0022 20.8 3.8 34 10-43 3-38 (94)
172 TIGR02852 spore_dpaB dipicolin 27.6 67 0.0015 25.8 3.0 39 10-48 2-40 (187)
173 PF12695 Abhydrolase_5: Alpha/ 27.6 1.7E+02 0.0036 21.0 5.1 28 16-43 6-33 (145)
174 PRK03359 putative electron tra 27.5 1.4E+02 0.003 25.2 5.0 39 103-143 104-148 (256)
175 cd03799 GT1_amsK_like This is 27.3 1.1E+02 0.0025 25.8 4.7 26 21-46 13-38 (355)
176 PF01297 TroA: Periplasmic sol 27.3 1.2E+02 0.0026 25.2 4.6 37 105-143 193-231 (256)
177 TIGR00679 hpr-ser Hpr(Ser) kin 27.1 2.6E+02 0.0057 24.3 6.7 46 100-147 72-119 (304)
178 PRK14478 nitrogenase molybdenu 27.1 88 0.0019 29.0 4.1 31 104-139 386-416 (475)
179 cd03822 GT1_ecORF704_like This 27.0 99 0.0021 26.1 4.3 28 19-46 13-40 (366)
180 cd01421 IMPCH Inosine monophos 26.8 1.8E+02 0.004 23.3 5.3 36 25-67 13-48 (187)
181 TIGR00347 bioD dethiobiotin sy 26.7 1.2E+02 0.0027 23.0 4.4 27 16-42 6-32 (166)
182 COG1618 Predicted nucleotide k 26.6 2.7E+02 0.0058 22.1 6.0 55 8-67 5-59 (179)
183 PF02684 LpxB: Lipid-A-disacch 26.5 1.5E+02 0.0033 26.5 5.3 24 113-136 82-108 (373)
184 PRK02910 light-independent pro 26.5 1.2E+02 0.0025 28.5 4.8 33 103-140 354-386 (519)
185 PF02142 MGS: MGS-like domain 25.9 57 0.0012 22.6 2.1 84 25-138 2-94 (95)
186 PRK05752 uroporphyrinogen-III 25.9 1.2E+02 0.0027 25.1 4.5 38 205-243 51-91 (255)
187 PRK10422 lipopolysaccharide co 25.9 1.2E+02 0.0026 26.5 4.6 46 7-52 4-51 (352)
188 PRK06067 flagellar accessory p 25.8 1.4E+02 0.003 24.3 4.7 40 10-49 27-66 (234)
189 cd02067 B12-binding B12 bindin 25.7 1.3E+02 0.0028 21.5 4.1 38 7-44 49-87 (119)
190 cd03466 Nitrogenase_NifN_2 Nit 25.5 1.1E+02 0.0025 27.7 4.5 32 103-139 364-395 (429)
191 PRK13608 diacylglycerol glucos 25.4 1.3E+02 0.0027 26.8 4.7 38 7-44 4-45 (391)
192 TIGR00355 purH phosphoribosyla 25.4 1.7E+02 0.0037 27.4 5.5 36 25-67 13-48 (511)
193 PRK13609 diacylglycerol glucos 25.2 1.3E+02 0.0027 26.5 4.6 40 101-142 94-135 (380)
194 PF03853 YjeF_N: YjeF-related 25.1 70 0.0015 24.9 2.7 36 7-44 24-60 (169)
195 KOG2585 Uncharacterized conser 24.8 1.4E+02 0.0031 27.3 4.7 39 6-45 264-302 (453)
196 PRK08057 cobalt-precorrin-6x r 24.7 1.7E+02 0.0037 24.6 5.0 20 26-45 15-34 (248)
197 COG0300 DltE Short-chain dehyd 24.6 68 0.0015 27.3 2.6 32 10-44 7-38 (265)
198 COG2099 CobK Precorrin-6x redu 24.4 1.7E+02 0.0036 24.8 4.8 23 25-47 14-36 (257)
199 PRK13982 bifunctional SbtC-lik 24.3 75 0.0016 29.5 3.0 39 8-46 256-306 (475)
200 PRK00881 purH bifunctional pho 24.1 2E+02 0.0043 27.0 5.7 37 24-67 16-52 (513)
201 PRK10916 ADP-heptose:LPS hepto 24.1 1E+02 0.0022 26.8 3.8 44 10-53 2-47 (348)
202 TIGR01285 nifN nitrogenase mol 24.0 1.2E+02 0.0027 27.6 4.4 19 24-42 182-200 (432)
203 PF02558 ApbA: Ketopantoate re 24.0 67 0.0015 24.0 2.3 20 27-46 12-31 (151)
204 PF01380 SIS: SIS domain SIS d 23.7 1.4E+02 0.003 21.4 4.0 31 18-48 62-92 (131)
205 COG2085 Predicted dinucleotide 23.6 71 0.0015 26.2 2.5 28 18-47 8-35 (211)
206 PLN02891 IMP cyclohydrolase 23.6 1.8E+02 0.0039 27.4 5.3 44 24-76 34-77 (547)
207 COG0467 RAD55 RecA-superfamily 23.4 1.3E+02 0.0028 25.0 4.2 43 9-51 24-66 (260)
208 cd01965 Nitrogenase_MoFe_beta_ 23.2 1.4E+02 0.0031 27.0 4.7 25 113-140 371-395 (428)
209 cd03115 SRP The signal recogni 23.2 1.9E+02 0.004 22.2 4.8 37 11-47 3-39 (173)
210 TIGR00064 ftsY signal recognit 23.1 1.5E+02 0.0033 25.1 4.5 39 9-47 72-111 (272)
211 KOG2144 Tyrosyl-tRNA synthetas 23.1 78 0.0017 27.4 2.7 33 4-45 42-74 (360)
212 PLN02605 monogalactosyldiacylg 23.1 1.7E+02 0.0036 25.9 5.0 34 12-45 3-39 (382)
213 PRK08558 adenine phosphoribosy 23.0 1.6E+02 0.0034 24.5 4.5 28 113-140 111-140 (238)
214 COG3433 Aryl carrier domain [S 23.0 46 0.00099 22.3 1.0 22 23-44 32-53 (74)
215 PRK12342 hypothetical protein; 23.0 1.6E+02 0.0036 24.8 4.6 39 103-143 101-145 (254)
216 PLN02293 adenine phosphoribosy 22.8 2.7E+02 0.0058 22.2 5.7 41 99-141 50-92 (187)
217 cd01983 Fer4_NifH The Fer4_Nif 22.8 2.1E+02 0.0045 18.7 4.5 32 12-43 3-34 (99)
218 PTZ00318 NADH dehydrogenase-li 22.7 1.2E+02 0.0025 27.5 4.0 36 6-46 8-43 (424)
219 COG4088 Predicted nucleotide k 22.7 1.1E+02 0.0024 25.3 3.4 110 10-153 3-119 (261)
220 COG0569 TrkA K+ transport syst 22.6 78 0.0017 26.0 2.6 21 26-46 13-33 (225)
221 PRK09219 xanthine phosphoribos 22.6 2.2E+02 0.0048 22.7 5.1 40 102-143 41-82 (189)
222 TIGR00421 ubiX_pad polyprenyl 22.5 91 0.002 24.7 2.9 26 26-51 16-41 (181)
223 PF01738 DLH: Dienelactone hyd 22.4 1.7E+02 0.0038 23.3 4.6 33 10-42 15-47 (218)
224 PF01210 NAD_Gly3P_dh_N: NAD-d 22.3 79 0.0017 24.2 2.5 21 26-46 12-32 (157)
225 KOG1014 17 beta-hydroxysteroid 22.3 74 0.0016 27.7 2.4 18 26-43 63-80 (312)
226 PF05728 UPF0227: Uncharacteri 22.1 2.2E+02 0.0048 22.7 5.1 50 101-150 47-97 (187)
227 PF01497 Peripla_BP_2: Peripla 22.1 1.5E+02 0.0032 23.8 4.2 40 102-144 52-93 (238)
228 PF07015 VirC1: VirC1 protein; 22.0 1.4E+02 0.003 24.9 3.9 34 17-50 11-44 (231)
229 PF03808 Glyco_tran_WecB: Glyc 21.9 3.8E+02 0.0083 20.8 8.1 92 25-143 37-134 (172)
230 PF02951 GSH-S_N: Prokaryotic 21.7 84 0.0018 23.2 2.3 24 23-46 18-41 (119)
231 TIGR02114 coaB_strep phosphopa 21.7 84 0.0018 25.9 2.6 18 26-43 29-46 (227)
232 PRK10964 ADP-heptose:LPS hepto 21.7 1.2E+02 0.0027 26.0 3.8 42 10-51 2-45 (322)
233 COG0313 Predicted methyltransf 21.5 3.2E+02 0.0069 23.4 6.0 50 102-153 69-125 (275)
234 TIGR00745 apbA_panE 2-dehydrop 21.5 73 0.0016 26.8 2.3 19 27-45 5-23 (293)
235 cd01141 TroA_d Periplasmic bin 21.5 1.7E+02 0.0036 22.7 4.3 40 100-142 59-100 (186)
236 PRK04940 hypothetical protein; 21.4 2.9E+02 0.0063 22.0 5.5 33 114-146 61-94 (180)
237 PRK06222 ferredoxin-NADP(+) re 21.3 1E+02 0.0022 26.2 3.1 37 9-47 99-135 (281)
238 PRK05299 rpsB 30S ribosomal pr 21.3 53 0.0012 27.8 1.4 33 113-145 157-191 (258)
239 cd01017 AdcA Metal binding pro 21.1 2.2E+02 0.0047 24.1 5.1 28 113-140 220-249 (282)
240 COG2874 FlaH Predicted ATPases 21.1 2.7E+02 0.0059 23.1 5.3 31 18-48 38-68 (235)
241 COG2910 Putative NADH-flavin r 20.9 88 0.0019 25.3 2.4 19 27-45 15-33 (211)
242 cd01974 Nitrogenase_MoFe_beta 20.9 1.8E+02 0.004 26.4 4.9 18 25-42 176-193 (435)
243 TIGR00288 conserved hypothetic 20.8 1.2E+02 0.0026 23.7 3.1 32 10-46 108-139 (160)
244 PF03403 PAF-AH_p_II: Platelet 20.7 87 0.0019 28.0 2.7 37 7-43 98-134 (379)
245 TIGR02113 coaC_strep phosphopa 20.6 74 0.0016 25.2 2.0 34 18-51 9-42 (177)
246 PF12694 MoCo_carrier: Putativ 20.6 4E+02 0.0087 20.5 7.3 83 125-241 12-96 (145)
247 PF00448 SRP54: SRP54-type pro 20.5 1.8E+02 0.0039 23.3 4.3 37 11-47 4-40 (196)
248 PF05724 TPMT: Thiopurine S-me 20.4 98 0.0021 25.3 2.7 27 11-43 40-66 (218)
249 PF13167 GTP-bdg_N: GTP-bindin 20.4 2.7E+02 0.0058 19.6 4.6 35 102-138 48-84 (95)
250 TIGR01007 eps_fam capsular exo 20.3 2.3E+02 0.005 22.4 4.9 38 9-46 17-56 (204)
251 KOG3062 RNA polymerase II elon 20.1 2.3E+02 0.005 23.8 4.7 30 9-38 2-31 (281)
252 TIGR00640 acid_CoA_mut_C methy 20.0 1.6E+02 0.0035 22.0 3.6 38 7-44 52-90 (132)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.9e-47 Score=342.65 Aligned_cols=243 Identities=52% Similarity=0.939 Sum_probs=187.2
Q ss_pred CCCCC-CCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCC
Q 041611 1 MSSSN-TRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIE 79 (249)
Q Consensus 1 m~~~~-~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~ 79 (249)
|-+.+ .+++|||++|||+|||+|||++|||+|+++|++|||++|+.+++++++..+..++++++.+|++..+++|+|.+
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~ 80 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVE 80 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCc
Confidence 44544 46899999999999999999999999999999999999999987765433223468999998875568888876
Q ss_pred ccccCCCCCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhcc-C
Q 041611 80 NVRELGNRGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHH-I 158 (249)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~-~ 158 (249)
+..+++.+....+..+...+.+.+++++++...+++|||+|+|++|+.++|+++|||++.|||++|+++++|++++.. .
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred ChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 554433222334555666778888888887533689999999999999999999999999999999999999998753 1
Q ss_pred C---CCCCCccc---cCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHH
Q 041611 159 G---DVKSLDVV---EFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRK 232 (249)
Q Consensus 159 ~---~~~~~~~~---~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~ 232 (249)
. ..++.+.+ .+||+|. ++.+|||.++......+...+++.+..+....++|||+|||+|||+++++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred ccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 1 11111122 3566665 9999999887643223344555656666667789999999999999999999886
Q ss_pred hCCCCeEEeCcCCC
Q 041611 233 MGHDRVFGVGPLSL 246 (249)
Q Consensus 233 ~~~~~v~~VGPl~~ 246 (249)
++.+|||+||||++
T Consensus 238 ~~~~~v~~IGPL~~ 251 (477)
T PLN02863 238 LGHDRVWAVGPILP 251 (477)
T ss_pred cCCCCeEEeCCCcc
Confidence 54358999999975
No 2
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.9e-44 Score=323.61 Aligned_cols=238 Identities=21% Similarity=0.290 Sum_probs=178.1
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccC-CCCceEEEecCCCCCCCCCCCCccccC
Q 041611 6 TRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDA-HPAIKTLVLPFPSHPSIPPGIENVREL 84 (249)
Q Consensus 6 ~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~-~~~i~~~~lp~~~~~~lp~~~~~~~~~ 84 (249)
..++|||++|||+|||+|||++|||+|++||++|||++|+.+..++...... .+.|+++.+|++..+|+|++.++..+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~ 83 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDV 83 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccccc
Confidence 3568999999999999999999999999999999999999987665532111 136999999987657888765443322
Q ss_pred CCCCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhcc---CCCC
Q 041611 85 GNRGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHH---IGDV 161 (249)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~---~~~~ 161 (249)
+......+....+.+++.+++++++. +++|||+|+|++|+.++|+++|||+++||++++++++++++.+.+ ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 161 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLR 161 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCC
Confidence 11111233345567899999999887 789999999999999999999999999999999999998866533 1111
Q ss_pred CCCccc-cCCCC-CC--CccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHHhCCCC
Q 041611 162 KSLDVV-EFPDL-PR--YPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRKMGHDR 237 (249)
Q Consensus 162 ~~~~~~-~~pg~-p~--~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~~~~~~ 237 (249)
...+.. .+||+ |. ...++.+|+|+++...+........+.+....+.+++|||+|||+|||+++++++++.++ +|
T Consensus 162 ~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~-~~ 240 (472)
T PLN02670 162 STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYR-KP 240 (472)
T ss_pred CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhC-CC
Confidence 111112 25554 31 123677899988754322223344455666667889999999999999999999988766 79
Q ss_pred eEEeCcCCC
Q 041611 238 VFGVGPLSL 246 (249)
Q Consensus 238 v~~VGPl~~ 246 (249)
||+||||++
T Consensus 241 v~~VGPl~~ 249 (472)
T PLN02670 241 IIPIGFLPP 249 (472)
T ss_pred eEEEecCCc
Confidence 999999976
No 3
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.3e-44 Score=324.76 Aligned_cols=236 Identities=27% Similarity=0.476 Sum_probs=178.7
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccC----CCCceEEEecCCCC-CCCCCCCCc
Q 041611 6 TRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDA----HPAIKTLVLPFPSH-PSIPPGIEN 80 (249)
Q Consensus 6 ~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~----~~~i~~~~lp~~~~-~~lp~~~~~ 80 (249)
.++.|||++|||+|||+|||++|||+|++||+.|||++|+.+..++.+..+. ...|+|+.+|++.. +++|++.++
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 4568999999999999999999999999999999999999987655443211 12499999998743 588877554
Q ss_pred cccCCC-CCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhcc--
Q 041611 81 VRELGN-RGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHH-- 157 (249)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~-- 157 (249)
..+.+. .....+......+++.+++++++...+++|||+|+|++|+.++|+++|||+++||+++++++++++++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 333332 22334555556788999999986433789999999999999999999999999999999999887765432
Q ss_pred -CCCCCCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHh-hhcCcEEeecchhhhhHHHHHHHHHHhCC
Q 041611 158 -IGDVKSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLA-NTSSWGCVFNSFDALEGEYSDYLKRKMGH 235 (249)
Q Consensus 158 -~~~~~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~-~~~a~~vl~NTf~eLE~~~~~~l~~~~~~ 235 (249)
.....+...+.+||+|+.+.++.+|||+++... . ..+.+...... .++++|||+|||+|||+++++++++.++
T Consensus 166 ~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~- 240 (491)
T PLN02534 166 HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL---P-DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIK- 240 (491)
T ss_pred cccCCCCCceeecCCCCccccccHHHCChhhcCc---c-cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcC-
Confidence 111222234568999875668999999875432 1 12333333333 3468899999999999999999988776
Q ss_pred CCeEEeCcCCC
Q 041611 236 DRVFGVGPLSL 246 (249)
Q Consensus 236 ~~v~~VGPl~~ 246 (249)
+|||+||||++
T Consensus 241 ~~v~~VGPL~~ 251 (491)
T PLN02534 241 KKVWCVGPVSL 251 (491)
T ss_pred CcEEEECcccc
Confidence 78999999974
No 4
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.6e-43 Score=317.48 Aligned_cols=230 Identities=19% Similarity=0.247 Sum_probs=173.2
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccc--cc-cC---C---CCceEEEecCCCC
Q 041611 1 MSSSNTRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSP--LL-DA---H---PAIKTLVLPFPSH 71 (249)
Q Consensus 1 m~~~~~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~--~~-~~---~---~~i~~~~lp~~~~ 71 (249)
|+|+ ..++|||++|||+|||+|||++|||+|++||+.|||++|+.++.++.+ .. +. . ..++|..+|
T Consensus 1 ~~~~-~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p---- 75 (480)
T PLN02555 1 MESE-SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE---- 75 (480)
T ss_pred CCCC-CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----
Confidence 7776 667999999999999999999999999999999999999987766542 11 10 0 124444444
Q ss_pred CCCCCCCCccccCCCCCcHHHHHHH-HhcHHHHHHHHHhC---CCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHH
Q 041611 72 PSIPPGIENVRELGNRGNYPIMTAL-GKLYDPIIDWFRSQ---ANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLL 147 (249)
Q Consensus 72 ~~lp~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~~---~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~ 147 (249)
+|+|++.+... .+..++..+ ..+.+.+++++++. ..+++|||+|+|++|+.++|+++|||+++||++++++
T Consensus 76 dglp~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~ 150 (480)
T PLN02555 76 DGWAEDDPRRQ-----DLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCAC 150 (480)
T ss_pred CCCCCCccccc-----CHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHH
Confidence 57776543211 123444444 35678888888754 2256999999999999999999999999999999999
Q ss_pred HHHHHhhhcc----CCCCCCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhH
Q 041611 148 ASVADYCWHH----IGDVKSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEG 223 (249)
Q Consensus 148 ~~~~~~~~~~----~~~~~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~ 223 (249)
++++++++.. .+..+++..+.+||+|. ++.+|||+++...+..+..++.+.+..++..+++|||+|||+|||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~ 227 (480)
T PLN02555 151 FSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEK 227 (480)
T ss_pred HHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhH
Confidence 9999998642 11111112356899986 9999999877543233344566777777888999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEeCcCCC
Q 041611 224 EYSDYLKRKMGHDRVFGVGPLSL 246 (249)
Q Consensus 224 ~~~~~l~~~~~~~~v~~VGPl~~ 246 (249)
++++++++. .|+|+||||++
T Consensus 228 ~~~~~l~~~---~~v~~iGPl~~ 247 (480)
T PLN02555 228 EIIDYMSKL---CPIKPVGPLFK 247 (480)
T ss_pred HHHHHHhhC---CCEEEeCcccC
Confidence 999999763 25999999975
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-42 Score=309.96 Aligned_cols=219 Identities=20% Similarity=0.288 Sum_probs=170.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCC-CCccccCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPG-IENVRELG 85 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~-~~~~~~~~ 85 (249)
.++|||++|||+|||+|||++|||+|+++|++|||++|+.+.+++... ..++|+++.+| +|+|++ .++..
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~--~~~~i~~~~ip----dglp~~~~~~~~--- 74 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD--PSSPISIATIS----DGYDQGGFSSAG--- 74 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC--CCCCEEEEEcC----CCCCCccccccc---
Confidence 467999999999999999999999999999999999999887655331 12469999987 578763 23221
Q ss_pred CCCcHHHHHHH-HhcHHHHHHHHHhCC---CCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhccCCCC
Q 041611 86 NRGNYPIMTAL-GKLYDPIIDWFRSQA---NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHHIGDV 161 (249)
Q Consensus 86 ~~~~~~~~~~~-~~l~~~l~~ll~~~~---~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~ 161 (249)
....++... +.+.+.+++++++.. .+++|||+|+|++|+.++|+++|||+|.||+++++.++++++.. ...
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~-~~~-- 149 (449)
T PLN02173 75 --SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY-INN-- 149 (449)
T ss_pred --CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH-hcc--
Confidence 123444444 467888998887641 24599999999999999999999999999999999887776532 111
Q ss_pred CCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHHhCCCCeEEe
Q 041611 162 KSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRKMGHDRVFGV 241 (249)
Q Consensus 162 ~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~~~~~~v~~V 241 (249)
++ ..+.+||+|. ++.+|||.++.+.+..+..++.+.+..++..+++|||+|||+|||+++++++++. +|||+|
T Consensus 150 ~~-~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---~~v~~V 222 (449)
T PLN02173 150 GS-LTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---CPVLTI 222 (449)
T ss_pred CC-ccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc---CCeeEE
Confidence 11 2345789886 8999999988654333345566777778888999999999999999999999763 479999
Q ss_pred CcCCC
Q 041611 242 GPLSL 246 (249)
Q Consensus 242 GPl~~ 246 (249)
|||++
T Consensus 223 GPl~~ 227 (449)
T PLN02173 223 GPTVP 227 (449)
T ss_pred cccCc
Confidence 99974
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.8e-42 Score=311.95 Aligned_cols=228 Identities=17% Similarity=0.216 Sum_probs=173.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHh-hCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLS-LKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELG 85 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La-~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~ 85 (249)
.++|||++|||+|||++||++|||+|+ ++|++|||++|+.+..++.+.....++++++.+|++..+++|+...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~------ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSA------ 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCc------
Confidence 468999999999999999999999998 7999999999998875542221111369999999764446652111
Q ss_pred CCCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhcc-CCCC---
Q 041611 86 NRGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHH-IGDV--- 161 (249)
Q Consensus 86 ~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~-~~~~--- 161 (249)
+....+......+.+.+++++++...+++|||+|+|++|+.++|+++|||++.||++++++++++++++.+ +...
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~ 156 (481)
T PLN02992 78 -HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH 156 (481)
T ss_pred -cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc
Confidence 11123333345677889998887533789999999999999999999999999999999999998888754 1111
Q ss_pred -CCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHH--h----C
Q 041611 162 -KSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRK--M----G 234 (249)
Q Consensus 162 -~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~--~----~ 234 (249)
..++.+.+||+|+ ++.+|+|..+.+. .+..+..+.+..++..+|+|||+|||+|||+++++++++. . +
T Consensus 157 ~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~ 231 (481)
T PLN02992 157 TVQRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVAR 231 (481)
T ss_pred ccCCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccC
Confidence 1112345788876 8999999766543 2345667777778888999999999999999999999763 1 3
Q ss_pred CCCeEEeCcCCCC
Q 041611 235 HDRVFGVGPLSLV 247 (249)
Q Consensus 235 ~~~v~~VGPl~~~ 247 (249)
+|||+||||++.
T Consensus 232 -~~v~~VGPl~~~ 243 (481)
T PLN02992 232 -VPVYPIGPLCRP 243 (481)
T ss_pred -CceEEecCccCC
Confidence 689999999763
No 7
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-41 Score=304.91 Aligned_cols=226 Identities=21% Similarity=0.321 Sum_probs=169.4
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCC-C--ceEEEecCCCCCCCCCCCCcccc
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHP-A--IKTLVLPFPSHPSIPPGIENVRE 83 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~-~--i~~~~lp~~~~~~lp~~~~~~~~ 83 (249)
.++|||++|||+|||+|||++|||+|++||++|||++|+.+..++.+. ...+ + ++++.+|. .+++|++.++..+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~~~~~~~~v~~~~~p~--~~glp~g~e~~~~ 80 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-NLFPHNIVFRSVTVPH--VDGLPVGTETVSE 80 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-ccCCCCceEEEEECCC--cCCCCCccccccc
Confidence 578999999999999999999999999999999999999987655542 1112 3 44555553 3688877554433
Q ss_pred CCCCCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhccCCCCCC
Q 041611 84 LGNRGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHHIGDVKS 163 (249)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~ 163 (249)
.+......+..+++.+++.+++++++. +++|||+|+ ++|+.++|+++|||++.||++++++++++++ +. +..
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~-~~~--- 152 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG-GEL--- 152 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc-ccC---
Confidence 332223445566677889999999887 789999995 8999999999999999999999999999874 31 111
Q ss_pred CccccCCCCCC-CccccccCCChhhc--ccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHHhCCCCeEE
Q 041611 164 LDVVEFPDLPR-YPVFKRRHLPSMVR--SYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRKMGHDRVFG 240 (249)
Q Consensus 164 ~~~~~~pg~p~-~~~~~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~~~~~~v~~ 240 (249)
...+||+|. .+.++.+|+|++.. ..+..+.+..++.+..+...+++|||+|||+|||+++++++++..+ +|||+
T Consensus 153 --~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~-~~v~~ 229 (453)
T PLN02764 153 --GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCR-KKVLL 229 (453)
T ss_pred --CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcC-CcEEE
Confidence 023588884 22478899987532 1111122344555555777889999999999999999999988655 68999
Q ss_pred eCcCCC
Q 041611 241 VGPLSL 246 (249)
Q Consensus 241 VGPl~~ 246 (249)
||||++
T Consensus 230 VGPL~~ 235 (453)
T PLN02764 230 TGPVFP 235 (453)
T ss_pred eccCcc
Confidence 999975
No 8
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=8.7e-42 Score=307.35 Aligned_cols=221 Identities=18% Similarity=0.288 Sum_probs=166.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhh-CCCcEEEEcCCCC-cccccccccCCCCceEEEecCCCCCCCCCCCCccccC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSL-KDLDITILVTPKN-LPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVREL 84 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~-~G~~VT~~~t~~~-~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~ 84 (249)
+++||+++|||+|||+|||++|||+|++ +|+.|||++|+.+ .+++.+.....++++++.++ +|+|++.+...+
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~----dglp~g~~~~~~- 76 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS----DGFDDGVISNTD- 76 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC----CCCCCccccccc-
Confidence 3479999999999999999999999996 7999999999865 32221111112368999886 578765432111
Q ss_pred CCCCcHHHHHHHHhcHHHHHHHHHhC--C-CCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhccCCCC
Q 041611 85 GNRGNYPIMTALGKLYDPIIDWFRSQ--A-NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHHIGDV 161 (249)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~l~~ll~~~--~-~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~ 161 (249)
+....+......+.+.+++++++. + .+++|||+|++++|+.++|+++|||++.|||++|++++++++++.. .
T Consensus 77 --~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~-~-- 151 (455)
T PLN02152 77 --DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG-N-- 151 (455)
T ss_pred --cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc-C--
Confidence 122334444456778888888764 1 3579999999999999999999999999999999999999988642 1
Q ss_pred CCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhc--CcEEeecchhhhhHHHHHHHHHHhCCCCeE
Q 041611 162 KSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTS--SWGCVFNSFDALEGEYSDYLKRKMGHDRVF 239 (249)
Q Consensus 162 ~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~--a~~vl~NTf~eLE~~~~~~l~~~~~~~~v~ 239 (249)
...+.+||+|. ++.+|||.++...+..+.++..+.+..+...+ ++|||+|||+|||+++++++++ .|||
T Consensus 152 --~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~----~~v~ 222 (455)
T PLN02152 152 --NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN----IEMV 222 (455)
T ss_pred --CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc----CCEE
Confidence 12346899886 89999999886433333445666666665543 5799999999999999999964 3799
Q ss_pred EeCcCCC
Q 041611 240 GVGPLSL 246 (249)
Q Consensus 240 ~VGPl~~ 246 (249)
+||||++
T Consensus 223 ~VGPL~~ 229 (455)
T PLN02152 223 AVGPLLP 229 (455)
T ss_pred EEcccCc
Confidence 9999975
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.6e-41 Score=303.10 Aligned_cols=225 Identities=18% Similarity=0.290 Sum_probs=166.1
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCC-CC
Q 041611 1 MSSSNTRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPG-IE 79 (249)
Q Consensus 1 m~~~~~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~-~~ 79 (249)
|... .++.|||++|||+|||+|||++|||+|++||++|||++|+.|..+.. ...++++++.+| +++|++ .+
T Consensus 1 ~~~~-~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~---~~~~~i~~~~ip----~glp~~~~~ 72 (451)
T PLN02410 1 MEEK-PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPS---DDFTDFQFVTIP----ESLPESDFK 72 (451)
T ss_pred CCcC-CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccc---cCCCCeEEEeCC----CCCCccccc
Confidence 5544 57789999999999999999999999999999999999998753211 111468898887 477763 22
Q ss_pred ccccCCCCCcHHHHHHH-HhcHHHHHHHHHhC----CCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhh
Q 041611 80 NVRELGNRGNYPIMTAL-GKLYDPIIDWFRSQ----ANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYC 154 (249)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~~----~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~ 154 (249)
+. . ...+.... +.+.+.++++++++ ..+++|||+|+|++|+.++|+++|||++.||+++++++++++++
T Consensus 73 ~~-----~-~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~ 146 (451)
T PLN02410 73 NL-----G-PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVF 146 (451)
T ss_pred cc-----C-HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHH
Confidence 11 1 11333333 45666777776653 23679999999999999999999999999999999999999887
Q ss_pred hcc-C-C---C-CC--CCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHH
Q 041611 155 WHH-I-G---D-VK--SLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYS 226 (249)
Q Consensus 155 ~~~-~-~---~-~~--~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~ 226 (249)
+.+ . + . .. ++....+||+|+ ++.+|+|...... .+.....+... ....+|+|||+|||+|||++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~--~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~ 220 (451)
T PLN02410 147 DKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWAS--LESIMELYRNT-VDKRTASSVIINTASCLESSSL 220 (451)
T ss_pred HHHHhccCCCCccccccCccccCCCCCC---CChHHCcchhcCC--cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHH
Confidence 654 1 1 1 11 112235788876 8899999765322 22233333332 3457899999999999999999
Q ss_pred HHHHHHhCCCCeEEeCcCCC
Q 041611 227 DYLKRKMGHDRVFGVGPLSL 246 (249)
Q Consensus 227 ~~l~~~~~~~~v~~VGPl~~ 246 (249)
+++++..| +|||+||||++
T Consensus 221 ~~l~~~~~-~~v~~vGpl~~ 239 (451)
T PLN02410 221 SRLQQQLQ-IPVYPIGPLHL 239 (451)
T ss_pred HHHHhccC-CCEEEeccccc
Confidence 99998777 79999999974
No 10
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.1e-41 Score=301.04 Aligned_cols=226 Identities=18% Similarity=0.273 Sum_probs=171.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhC-CCcEEEEcCCCCcccc--cccccC---CCCceEEEecCCCCCCC-CCCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLK-DLDITILVTPKNLPIL--SPLLDA---HPAIKTLVLPFPSHPSI-PPGIE 79 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~-G~~VT~~~t~~~~~~~--~~~~~~---~~~i~~~~lp~~~~~~l-p~~~~ 79 (249)
.++||+++|||+|||+|||++|||+|+++ |++|||++|..+...+ ...... .++|+++.+|++..+++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~-- 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPD-- 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCC--
Confidence 35799999999999999999999999987 9999999988765433 111111 12599999986532333 221
Q ss_pred ccccCCCCCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCc-eEEEecchHHHHHHHHhhhcc-
Q 041611 80 NVRELGNRGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIV-RIAFFSSGWLLASVADYCWHH- 157 (249)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP-~v~~~~~~a~~~~~~~~~~~~- 157 (249)
. +....+....+.+.+.+++++++...+++|||+|+|++|+.++|+++||| +++|+++++++++++++++.+
T Consensus 80 -~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 80 -A-----TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred -c-----cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 0 12234555667788999999987644789999999999999999999999 699999999999999998764
Q ss_pred CCC-C---CCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHHh
Q 041611 158 IGD-V---KSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRKM 233 (249)
Q Consensus 158 ~~~-~---~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~~ 233 (249)
+.. . +.++.+.+||+|+ ++.+|+|..+.+.+ +..+..+.+..++..+|+|||+|||+|||+++++++++.+
T Consensus 154 ~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 154 TVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred cccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 111 1 1122355899986 99999998775432 2234455566677889999999999999999999998752
Q ss_pred ------CCCCeEEeCcCCC
Q 041611 234 ------GHDRVFGVGPLSL 246 (249)
Q Consensus 234 ------~~~~v~~VGPl~~ 246 (249)
+ +|+|+||||++
T Consensus 229 ~~~~~~~-~~v~~VGPl~~ 246 (470)
T PLN03015 229 ELNRVMK-VPVYPIGPIVR 246 (470)
T ss_pred ccccccC-CceEEecCCCC
Confidence 2 57999999974
No 11
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.3e-41 Score=302.28 Aligned_cols=223 Identities=22% Similarity=0.295 Sum_probs=166.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN 86 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~ 86 (249)
+++|||++|||+|||+|||++|||+|+++|++|||++|+.+..++++.....++++++.++++..+++|++.+...+.+.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 35899999999999999999999999999999999999988766644321113588877776644688877543332221
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhccCCCCCCCcc
Q 041611 87 RGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHHIGDVKSLDV 166 (249)
Q Consensus 87 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 166 (249)
.....+.+....+.+.+++++++. +++|||+|+ ++|+.++|+++|||++.||++++++++++++.. .+ .+
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~--~~---~~-- 152 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR--AE---LG-- 152 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH--hh---cC--
Confidence 112234555567888999988876 789999995 899999999999999999999999999988732 11 11
Q ss_pred ccCCCCCC-CccccccCC--ChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHHhCCCCeEEeCc
Q 041611 167 VEFPDLPR-YPVFKRRHL--PSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRKMGHDRVFGVGP 243 (249)
Q Consensus 167 ~~~pg~p~-~~~~~~~dl--p~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~~~~~~v~~VGP 243 (249)
..+||+|. .+.++.+|+ |.++. . ....+.+..+...+++|||+|||+|||+++++++++..+ +|||+|||
T Consensus 153 ~~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~-~~v~~VGP 225 (446)
T PLN00414 153 FPPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQ-RKVLLTGP 225 (446)
T ss_pred CCCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcC-CCeEEEcc
Confidence 23588875 223454543 33331 1 124455566777889999999999999999999988666 68999999
Q ss_pred CCC
Q 041611 244 LSL 246 (249)
Q Consensus 244 l~~ 246 (249)
|++
T Consensus 226 l~~ 228 (446)
T PLN00414 226 MLP 228 (446)
T ss_pred cCC
Confidence 975
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1e-40 Score=301.28 Aligned_cols=225 Identities=16% Similarity=0.252 Sum_probs=172.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN 86 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~ 86 (249)
.++|||++|||+|||+|||++|||+|+++|++|||+||+.+.+++.+..+..++++++.+| ++++++. +
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp----~g~~~~~------~- 73 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSIS----DGQDDDP------P- 73 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECC----CCCCCCc------c-
Confidence 5689999999999999999999999999999999999999876655432222469999887 3444321 1
Q ss_pred CCcHHHHHHHH-hcHHHHHHHHHhCC--CCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhcc-CC--C
Q 041611 87 RGNYPIMTALG-KLYDPIIDWFRSQA--NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHH-IG--D 160 (249)
Q Consensus 87 ~~~~~~~~~~~-~l~~~l~~ll~~~~--~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~-~~--~ 160 (249)
..+..+.+.+. .+.+.++++++++. .+++|||+|+|++|+.++|+++|||+++||++++++++++++++.+ .. .
T Consensus 74 ~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 74 RDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 11234445554 68899999988752 2568999999999999999999999999999999999999888754 11 1
Q ss_pred CC-----CCcc-ccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHHHh-
Q 041611 161 VK-----SLDV-VEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKRKM- 233 (249)
Q Consensus 161 ~~-----~~~~-~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~~- 233 (249)
.. +.+. ..+||+|. ++.+|+|+++......+..++.+.+..+...+++||++|||+|||+++++++++..
T Consensus 154 ~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 230 (448)
T PLN02562 154 SETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYN 230 (448)
T ss_pred ccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhc
Confidence 10 1111 24788875 89999998775432233446777777788888999999999999999999987532
Q ss_pred ---CCCCeEEeCcCCC
Q 041611 234 ---GHDRVFGVGPLSL 246 (249)
Q Consensus 234 ---~~~~v~~VGPl~~ 246 (249)
. ++||+||||++
T Consensus 231 ~~~~-~~v~~iGpl~~ 245 (448)
T PLN02562 231 NGQN-PQILQIGPLHN 245 (448)
T ss_pred cccC-CCEEEecCccc
Confidence 3 68999999975
No 13
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7.2e-41 Score=301.14 Aligned_cols=225 Identities=20% Similarity=0.260 Sum_probs=168.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN 86 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~ 86 (249)
.++|||++|||+|||+|||++|||+|++||++|||++|..+..++.+......++++..++++..+++|++.++..++..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 46899999999999999999999999999999999999987766544211113578888876534578876543222211
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhccCCCCCCCcc
Q 041611 87 RGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHHIGDVKSLDV 166 (249)
Q Consensus 87 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 166 (249)
+....+....+.+.+.+++++++. ++||||+| +++|+.++|+++|||++.||++++++++ +++++.. .. .
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~-~~-----~ 152 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGG-KL-----G 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcc-cc-----C
Confidence 111234445567888999999887 88999999 5899999999999999999999999775 6666531 10 1
Q ss_pred ccCCCCCC-CccccccCCChhhcccCCCCchhhHHHHH-HHhhhcCcEEeecchhhhhHHHHHHHHHHhCCCCeEEeCcC
Q 041611 167 VEFPDLPR-YPVFKRRHLPSMVRSYKESDPESQFVKDG-NLANTSSWGCVFNSFDALEGEYSDYLKRKMGHDRVFGVGPL 244 (249)
Q Consensus 167 ~~~pg~p~-~~~~~~~dlp~~~~~~~~~~~~~~~~~~~-~~~~~~a~~vl~NTf~eLE~~~~~~l~~~~~~~~v~~VGPl 244 (249)
..+||+|. .+.++.+|+|.+ .. .+..++.+.+. .+...+++||++|||+|||+++++++++.++ ++||+||||
T Consensus 153 ~~~pglp~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~-~~v~~vGpl 227 (442)
T PLN02208 153 VPPPGYPSSKVLFRENDAHAL--AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYH-KKVLLTGPM 227 (442)
T ss_pred CCCCCCCCcccccCHHHcCcc--cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcC-CCEEEEeec
Confidence 23689885 234788999964 11 22334444433 3567789999999999999999999988776 789999999
Q ss_pred CC
Q 041611 245 SL 246 (249)
Q Consensus 245 ~~ 246 (249)
++
T Consensus 228 ~~ 229 (442)
T PLN02208 228 FP 229 (442)
T ss_pred cc
Confidence 75
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-40 Score=299.78 Aligned_cols=229 Identities=19% Similarity=0.276 Sum_probs=166.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCC----CcEEEEcCCCCcccccc----cccCCCCceEEEecCCCCCCCCCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKD----LDITILVTPKNLPILSP----LLDAHPAIKTLVLPFPSHPSIPPGI 78 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G----~~VT~~~t~~~~~~~~~----~~~~~~~i~~~~lp~~~~~~lp~~~ 78 (249)
++.|||++|+|+|||+|||++|||+|++|| ++||++++..+...+.+ .....++|+++.+|+. .+.+++.
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~--~~~~~~~ 79 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAV--TPYSSSS 79 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCC--CCCCCcc
Confidence 457999999999999999999999999998 45555666654432221 1111246999998853 1112221
Q ss_pred CccccCCCCCcHHHHHHHHhcHHHHHHHHHhCC--CCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhc
Q 041611 79 ENVRELGNRGNYPIMTALGKLYDPIIDWFRSQA--NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWH 156 (249)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~--~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~ 156 (249)
+. . ......+......+.+.++++++++. .+++|||+|+|++|+.++|+++|||+++|||++|++++++++++.
T Consensus 80 ~~--~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~ 155 (451)
T PLN03004 80 TS--R--HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPT 155 (451)
T ss_pred cc--c--cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHh
Confidence 11 1 01112333444567778888887652 256999999999999999999999999999999999999999875
Q ss_pred c-CCC-C---CCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHHH
Q 041611 157 H-IGD-V---KSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLKR 231 (249)
Q Consensus 157 ~-~~~-~---~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~ 231 (249)
. ... . .+...+.+||+|. ++.+|||+++.+.+ +..++++.+..+.+.+++|||+|||+|||++++++|++
T Consensus 156 ~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~ 230 (451)
T PLN03004 156 IDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE 230 (451)
T ss_pred ccccccccccccCCeecCCCCCC---CChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh
Confidence 4 111 1 1112345889886 89999999876532 34567777777888889999999999999999999987
Q ss_pred HhCCCCeEEeCcCCC
Q 041611 232 KMGHDRVFGVGPLSL 246 (249)
Q Consensus 232 ~~~~~~v~~VGPl~~ 246 (249)
..+.+|||+||||++
T Consensus 231 ~~~~~~v~~vGPl~~ 245 (451)
T PLN03004 231 ELCFRNIYPIGPLIV 245 (451)
T ss_pred cCCCCCEEEEeeecc
Confidence 532158999999974
No 15
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.9e-40 Score=298.71 Aligned_cols=225 Identities=22% Similarity=0.265 Sum_probs=169.4
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHH--HhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCC
Q 041611 1 MSSSNTRTTHILIFPYPAQGHMLPLLDLTHQ--LSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGI 78 (249)
Q Consensus 1 m~~~~~~~~hvvl~p~p~~GHi~P~l~La~~--La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~ 78 (249)
|+++...+.|||++|+|+|||+|||++||++ |++||++|||++|+.+++++++.......+++..+| +++|++.
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~----~glp~~~ 76 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS----DGLPKDD 76 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC----CCCCCCc
Confidence 7777667789999999999999999999999 569999999999999876654321111345555554 5777653
Q ss_pred CccccCCCCCcHHHHHHH-HhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhcc
Q 041611 79 ENVRELGNRGNYPIMTAL-GKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHH 157 (249)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~ 157 (249)
+. ....+...+ +.+.+.+++++++. ++||||+|.+++|+.++|+++|||++.||++++++++++++++..
T Consensus 77 ~~-------~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~ 147 (456)
T PLN02210 77 PR-------APETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK 147 (456)
T ss_pred cc-------CHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc
Confidence 21 122344444 45678888888876 799999999999999999999999999999999999999887532
Q ss_pred -CCCC--CC-CccccCCCCCCCccccccCCChhhcccCCCCchhhH-HHHHHHhhhcCcEEeecchhhhhHHHHHHHHHH
Q 041611 158 -IGDV--KS-LDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQF-VKDGNLANTSSWGCVFNSFDALEGEYSDYLKRK 232 (249)
Q Consensus 158 -~~~~--~~-~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~~~ 232 (249)
.... .+ ++.+.+||+|+ ++.+|+|.++... ++..+.. ..+..+...++++|++|||+|||+++++++++.
T Consensus 148 ~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 222 (456)
T PLN02210 148 TNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL 222 (456)
T ss_pred cCCCCcccccCCeeeCCCCCC---CChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc
Confidence 1111 11 12345788876 8999999877653 2222333 334445667899999999999999999999872
Q ss_pred hCCCCeEEeCcCCC
Q 041611 233 MGHDRVFGVGPLSL 246 (249)
Q Consensus 233 ~~~~~v~~VGPl~~ 246 (249)
++||+|||+++
T Consensus 223 ---~~v~~VGPl~~ 233 (456)
T PLN02210 223 ---KPVIPIGPLVS 233 (456)
T ss_pred ---CCEEEEcccCc
Confidence 58999999985
No 16
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.9e-40 Score=300.40 Aligned_cols=224 Identities=19% Similarity=0.246 Sum_probs=168.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCC----CcEEEEcCCCCcc----ccccccc----CCCCceEEEecCCCCCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKD----LDITILVTPKNLP----ILSPLLD----AHPAIKTLVLPFPSHPSI 74 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G----~~VT~~~t~~~~~----~~~~~~~----~~~~i~~~~lp~~~~~~l 74 (249)
.++|||++|||+|||+|||++|||+|++|| +.|||++|..+.. ++.+... ...+|+++++|+. .+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~ 78 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV---EP 78 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC---CC
Confidence 467999999999999999999999999996 8999999887532 2222111 0125899998853 23
Q ss_pred CCCCCccccCCCCCcHHHHH-HHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHh
Q 041611 75 PPGIENVRELGNRGNYPIMT-ALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADY 153 (249)
Q Consensus 75 p~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~ 153 (249)
|++.+. ...+.. ....+.+.+++++++...+++|||+|+|++|+.++|+++|||++.|||+++++++++++
T Consensus 79 p~~~e~--------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 79 PTDAAG--------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred CCcccc--------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 433221 112232 34567888999888763357999999999999999999999999999999999999999
Q ss_pred hhcc-CCC----CCCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHH
Q 041611 154 CWHH-IGD----VKSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDY 228 (249)
Q Consensus 154 ~~~~-~~~----~~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~ 228 (249)
++.. ... .+..+.+.+||+|. ++.+|||.++...+ +..++++....++..+++|||+|||+|||++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 151 LPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 8764 111 11112345888886 89999998765432 23355666667778899999999999999999999
Q ss_pred HHHHh---C--CCCeEEeCcCCC
Q 041611 229 LKRKM---G--HDRVFGVGPLSL 246 (249)
Q Consensus 229 l~~~~---~--~~~v~~VGPl~~ 246 (249)
+++.. | .++||+||||++
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~ 248 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVIS 248 (480)
T ss_pred HHhccccccCCCCceEEeCCCcc
Confidence 98742 1 157999999974
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-38 Score=289.55 Aligned_cols=228 Identities=23% Similarity=0.303 Sum_probs=175.0
Q ss_pred CCCCCCceEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCc
Q 041611 3 SSNTRTTHILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIEN 80 (249)
Q Consensus 3 ~~~~~~~hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~ 80 (249)
+++..++||+++|+|+|||+|||++||++|++| |++|||++|+.+.+++++... .++++|+.+| +++|++.+.
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp----~~~p~~~~~ 79 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIP----NVIPSELVR 79 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECC----CCCCCcccc
Confidence 444668999999999999999999999999999 999999999998776655321 2479999887 345543221
Q ss_pred cccCCCCCcHHHHHHH-HhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHHhhhcc-C
Q 041611 81 VRELGNRGNYPIMTAL-GKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVADYCWHH-I 158 (249)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~-~ 158 (249)
.. + ...+...+ +.+.+.+++++++...++||||+|.++.|+.++|+++|||+|.||++++++++++++++.+ .
T Consensus 80 ~~----~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 80 AA----D-FPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred cc----C-HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 11 1 22333333 4677888888887533689999999999999999999999999999999999999888654 1
Q ss_pred C--CC-C----CCccc-cCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHHHH
Q 041611 159 G--DV-K----SLDVV-EFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDYLK 230 (249)
Q Consensus 159 ~--~~-~----~~~~~-~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~l~ 230 (249)
. .. . .++.+ .+||+|. ++..|+|.++... ....++.+.+..++..++++|++|||+|||++++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 229 (459)
T PLN02448 155 NGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALK 229 (459)
T ss_pred ccCCCCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHH
Confidence 1 01 0 11112 3677765 8999999876543 23346667777777888999999999999999999998
Q ss_pred HHhCCCCeEEeCcCCC
Q 041611 231 RKMGHDRVFGVGPLSL 246 (249)
Q Consensus 231 ~~~~~~~v~~VGPl~~ 246 (249)
+.++ +++|+|||+.+
T Consensus 230 ~~~~-~~~~~iGP~~~ 244 (459)
T PLN02448 230 SKFP-FPVYPIGPSIP 244 (459)
T ss_pred hhcC-CceEEecCccc
Confidence 8776 68999999975
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.2e-38 Score=287.12 Aligned_cols=234 Identities=29% Similarity=0.512 Sum_probs=172.0
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccC----CC--CceEEEecCCCC-CCCCCCC
Q 041611 6 TRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDA----HP--AIKTLVLPFPSH-PSIPPGI 78 (249)
Q Consensus 6 ~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~----~~--~i~~~~lp~~~~-~~lp~~~ 78 (249)
.++.||+++|+|+|||+|||++||++|++||++|||++|+.+.+++++.... .+ .+++..++++.. +++|++.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 4568999999999999999999999999999999999999987665543211 11 245666665532 3677765
Q ss_pred CccccCC---C----CCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHH
Q 041611 79 ENVRELG---N----RGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVA 151 (249)
Q Consensus 79 ~~~~~~~---~----~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~ 151 (249)
++....+ . .....+.+....+.+.+++++++. ++||||+|.+++|+.++|+++|||+|+||++++++++++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 4332111 0 112234444467788888888876 799999999999999999999999999999999998888
Q ss_pred Hhhhcc---CCCCCCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHHHH
Q 041611 152 DYCWHH---IGDVKSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYSDY 228 (249)
Q Consensus 152 ~~~~~~---~~~~~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~~~ 228 (249)
+++... ....++...+.+||+|+.+.++..++|.. +....+.+++....+...++++|++|||+|||++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~ 236 (482)
T PLN03007 161 YCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADF 236 (482)
T ss_pred HHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHH
Confidence 765432 11111112345899986556778888852 12233455665666678889999999999999999999
Q ss_pred HHHHhCCCCeEEeCcCCC
Q 041611 229 LKRKMGHDRVFGVGPLSL 246 (249)
Q Consensus 229 l~~~~~~~~v~~VGPl~~ 246 (249)
+++..+ +++|+||||.+
T Consensus 237 ~~~~~~-~~~~~VGPl~~ 253 (482)
T PLN03007 237 YKSFVA-KRAWHIGPLSL 253 (482)
T ss_pred HHhccC-CCEEEEccccc
Confidence 987665 68999999864
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.7e-38 Score=286.81 Aligned_cols=228 Identities=20% Similarity=0.293 Sum_probs=157.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCC---cEEEEcCCCCcc-c----ccccccCCCCceEEEecCCCCCCCCCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDL---DITILVTPKNLP-I----LSPLLDAHPAIKTLVLPFPSHPSIPPGI 78 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~---~VT~~~t~~~~~-~----~~~~~~~~~~i~~~~lp~~~~~~lp~~~ 78 (249)
+++||+++|||+|||+|||++|||+|++||. .||+++|..+.. . ++...+..++|+|+.+|++. + |++.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~-p~~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ--D-PPPM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC--C-Cccc
Confidence 5689999999999999999999999999994 567777654322 1 11111112469999998642 2 2221
Q ss_pred CccccCCCCCcHHHHHHHHhcHHHHHHHHHhC----C---C-CCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHH
Q 041611 79 ENVRELGNRGNYPIMTALGKLYDPIIDWFRSQ----A---N-PPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASV 150 (249)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~----~---~-~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~ 150 (249)
+.... .....+......+.+.+++.++++ . . +++|||+|+|++|+.++|+++|||+++|||++++++++
T Consensus 79 ~~~~~---~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~ 155 (475)
T PLN02167 79 ELFVK---ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGM 155 (475)
T ss_pred ccccc---chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 11010 011223333334444444443322 1 1 46999999999999999999999999999999999999
Q ss_pred HHhhhcc-CCCC------CCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhH
Q 041611 151 ADYCWHH-IGDV------KSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEG 223 (249)
Q Consensus 151 ~~~~~~~-~~~~------~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~ 223 (249)
+++++.. +... .+++.+.+||+|+ .++..|+|.++.+. . .++.+.+..++..+++|||+|||+|||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~--~l~~~dlp~~~~~~---~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~ 229 (475)
T PLN02167 156 MKYLPERHRKTASEFDLSSGEEELPIPGFVN--SVPTKVLPPGLFMK---E-SYEAWVEIAERFPEAKGILVNSFTELEP 229 (475)
T ss_pred HHHHHHhccccccccccCCCCCeeECCCCCC--CCChhhCchhhhCc---c-hHHHHHHHHHhhcccCEeeeccHHHHHH
Confidence 9988753 1111 1112355889853 38999999876543 1 2456667777888999999999999999
Q ss_pred HHHHHHHHHhC-CCCeEEeCcCCC
Q 041611 224 EYSDYLKRKMG-HDRVFGVGPLSL 246 (249)
Q Consensus 224 ~~~~~l~~~~~-~~~v~~VGPl~~ 246 (249)
++++++++..+ .+++|+||||++
T Consensus 230 ~~~~~l~~~~~~~p~v~~vGpl~~ 253 (475)
T PLN02167 230 NAFDYFSRLPENYPPVYPVGPILS 253 (475)
T ss_pred HHHHHHHhhcccCCeeEEeccccc
Confidence 99999987522 258999999975
No 20
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-37 Score=280.02 Aligned_cols=227 Identities=19% Similarity=0.246 Sum_probs=163.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCC--CcEEEEcCCCCcc-ccccccc----CCCCceEEEecCCCCCCCCCCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKD--LDITILVTPKNLP-ILSPLLD----AHPAIKTLVLPFPSHPSIPPGIE 79 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G--~~VT~~~t~~~~~-~~~~~~~----~~~~i~~~~lp~~~~~~lp~~~~ 79 (249)
+++||+++|+|+|||+|||++|||+|++|| +.|||++|+.+.. .+....+ ..++++|+.+|... ..++. .
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~~~~~-~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE--EKPTL-G 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC--CCCcc-c
Confidence 568999999999999999999999999998 9999999998752 2221111 12469999998421 11210 0
Q ss_pred ccccCCCCCcHHHHHHHHhc----HHHHHHHHHhCC---CCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHH
Q 041611 80 NVRELGNRGNYPIMTALGKL----YDPIIDWFRSQA---NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVAD 152 (249)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l----~~~l~~ll~~~~---~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~ 152 (249)
... +....+...++.+ ++.+++++++.. .+++|||+|+|++|+.++|+++|||+++|||++|+++++++
T Consensus 79 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 79 GTQ----SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred ccc----CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 111 1122333333344 566777776531 24699999999999999999999999999999999999999
Q ss_pred hhhcc-C-C--C--CCCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHHHH
Q 041611 153 YCWHH-I-G--D--VKSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGEYS 226 (249)
Q Consensus 153 ~~~~~-~-~--~--~~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~~~ 226 (249)
+++.. . . . .+++..+.+||+++ +++.+|+|+++... +. +..+.+..+...++++||+|||++||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~vPgl~~--~l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 155 YLADRHSKDTSVFVRNSEEMLSIPGFVN--PVPANVLPSALFVE---DG-YDAYVKLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred HhhhccccccccCcCCCCCeEECCCCCC--CCChHHCcchhcCC---cc-HHHHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 88754 1 1 1 11113356899832 39999999877532 22 455666677788999999999999999999
Q ss_pred HHHHHHhCCCCeEEeCcCCC
Q 041611 227 DYLKRKMGHDRVFGVGPLSL 246 (249)
Q Consensus 227 ~~l~~~~~~~~v~~VGPl~~ 246 (249)
+++++.-..+++|+||||++
T Consensus 229 ~~~~~~~~~p~v~~VGPl~~ 248 (468)
T PLN02207 229 NHFLDEQNYPSVYAVGPIFD 248 (468)
T ss_pred HHHHhccCCCcEEEecCCcc
Confidence 99976211157999999975
No 21
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-37 Score=283.61 Aligned_cols=221 Identities=17% Similarity=0.216 Sum_probs=161.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHhhCC--CcEEEEcCCCCccccc---ccc---cC--CCCceEEEecCCCCCCCCCC
Q 041611 8 TTHILIFPYPAQGHMLPLLDLTHQLSLKD--LDITILVTPKNLPILS---PLL---DA--HPAIKTLVLPFPSHPSIPPG 77 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~l~La~~La~~G--~~VT~~~t~~~~~~~~---~~~---~~--~~~i~~~~lp~~~~~~lp~~ 77 (249)
+.|||++|||+|||++||++|||+|++|| ++|||++|+.+..++. +.. .. .++|+++.+|+. .++.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG----DQPT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC----CCCc
Confidence 57999999999999999999999999998 8999999998765321 101 11 236999998853 2211
Q ss_pred CCccccCCCCCcHHHHHHH-HhcHHHHHHHHHhC---C-CCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHHHHHH
Q 041611 78 IENVRELGNRGNYPIMTAL-GKLYDPIIDWFRSQ---A-NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLASVAD 152 (249)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~~---~-~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~ 152 (249)
. .. ..+..+...+ ..+.+.+++++.+. . .+++|||+|+|++|+.++|+++|||++.|||++++++++++
T Consensus 78 -~---~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~ 151 (481)
T PLN02554 78 -T---ED--PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQL 151 (481)
T ss_pred -c---cc--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHH
Confidence 0 00 1111222222 34556666665431 1 24599999999999999999999999999999999999999
Q ss_pred hhhcc-CC--CC--C--C-CccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHhhhcCcEEeecchhhhhHH
Q 041611 153 YCWHH-IG--DV--K--S-LDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLANTSSWGCVFNSFDALEGE 224 (249)
Q Consensus 153 ~~~~~-~~--~~--~--~-~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~NTf~eLE~~ 224 (249)
+++.+ .. .. + + .+.+.+||++. +++.+|+|..+.+. .++.++.+..+++.+++||++|||+|||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~ 225 (481)
T PLN02554 152 HVQMLYDEKKYDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQ 225 (481)
T ss_pred hhhhhccccccCccccCCCCceeECCCCCC--CCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 98765 11 11 1 1 12345888852 38999999876432 346677777788889999999999999999
Q ss_pred HHHHHHHH--hCCCCeEEeCcCC
Q 041611 225 YSDYLKRK--MGHDRVFGVGPLS 245 (249)
Q Consensus 225 ~~~~l~~~--~~~~~v~~VGPl~ 245 (249)
++++|++. .. +++|+||||+
T Consensus 226 ~~~~l~~~~~~~-~~v~~vGpl~ 247 (481)
T PLN02554 226 ALKFFSGSSGDL-PPVYPVGPVL 247 (481)
T ss_pred HHHHHHhcccCC-CCEEEeCCCc
Confidence 99999863 22 6899999994
No 22
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.58 E-value=2.1e-16 Score=145.19 Aligned_cols=235 Identities=22% Similarity=0.294 Sum_probs=128.2
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceE---EEecCCC-CCCCCCCCCccc-
Q 041611 8 TTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKT---LVLPFPS-HPSIPPGIENVR- 82 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~---~~lp~~~-~~~lp~~~~~~~- 82 (249)
+.|++++|+|++||++|+++||++|+++||+||++++..+....... .....+.. ...++.. .++++.+.+...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 67999999999999999999999999999999999998765543221 10011111 1111110 012332211100
Q ss_pred cCCCCCcHHHHHHHH-hcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcC-CceEEEecchHHHHHHHHhhhcc--C
Q 041611 83 ELGNRGNYPIMTALG-KLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLN-IVRIAFFSSGWLLASVADYCWHH--I 158 (249)
Q Consensus 83 ~~~~~~~~~~~~~~~-~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lg-iP~v~~~~~~a~~~~~~~~~~~~--~ 158 (249)
... .....+...+. .+......+......++||+|+|.++.|...+|.+.+ ++...+++.++...++..+.+.. .
T Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p 162 (496)
T KOG1192|consen 84 DIS-ESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVP 162 (496)
T ss_pred HHH-HHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccC
Confidence 000 00112222222 2333333333222224999999999999999998875 99999999999888777765542 1
Q ss_pred CCCC--CCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHHHh----hhcCcEEeecc-hhhhhHHHHHHHHH
Q 041611 159 GDVK--SLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGNLA----NTSSWGCVFNS-FDALEGEYSDYLKR 231 (249)
Q Consensus 159 ~~~~--~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~a~~vl~NT-f~eLE~~~~~~l~~ 231 (249)
.... ..+...+++... .+...+++...................... ...+++++.|| |.++|+.....++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~ 240 (496)
T KOG1192|consen 163 SPFSLSSGDDMSFPERVP--NLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEP 240 (496)
T ss_pred cccCccccccCcHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCC
Confidence 1000 000011111111 133333443332210000000111111111 13455788888 99999988866643
Q ss_pred H-hCCCCeEEeCcCCCC
Q 041611 232 K-MGHDRVFGVGPLSLV 247 (249)
Q Consensus 232 ~-~~~~~v~~VGPl~~~ 247 (249)
. .. +++++|||++..
T Consensus 241 ~~~~-~~v~~IG~l~~~ 256 (496)
T KOG1192|consen 241 RPLL-PKVIPIGPLHVK 256 (496)
T ss_pred CCCC-CCceEECcEEec
Confidence 3 23 789999999764
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.57 E-value=2.4e-15 Score=134.56 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=85.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCc---ccc--
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIEN---VRE-- 83 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~---~~~-- 83 (249)
+||+++++|++||++|++.||++|++|||+|||++++.....++. .+++|+.++.. .+..... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~----~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-----AGLEFVPVGGD----PDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-----cCCceeeCCCC----HHHHHhhhhhccccc
Confidence 489999999999999999999999999999999999876655554 46888876632 1100000 000
Q ss_pred CCC-CCcH----HHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchH
Q 041611 84 LGN-RGNY----PIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGW 145 (249)
Q Consensus 84 ~~~-~~~~----~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a 145 (249)
... .... .+......+...+.+.+++. ++||||+|.+..|+..+|+++|||++.+++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 000 0011 11111122222333333334 899999999889999999999999999988764
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.50 E-value=3.4e-14 Score=126.99 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=81.0
Q ss_pred EcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCC-CCcHHH
Q 041611 14 FPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN-RGNYPI 92 (249)
Q Consensus 14 ~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~-~~~~~~ 92 (249)
+.+|++||++|++.||++|+++||+||+++++.+.+.++. .+++++.++... ..++..+....... .....+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-----AGAEFVLYGSAL--PPPDNPPENTEEEPIDIIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcC--ccccccccccCcchHHHHHHH
Confidence 4589999999999999999999999999999988777665 478888776321 00111000000000 011112
Q ss_pred HHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecc
Q 041611 93 MTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 93 ~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~ 143 (249)
......+.+.+.+++++. ++||||+|.++.|+..+|+++|||+|.+.+.
T Consensus 74 ~~~~~~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 74 LDEAEDVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 222222223344445555 8999999999899999999999999988654
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.19 E-value=6e-12 Score=96.12 Aligned_cols=126 Identities=18% Similarity=0.242 Sum_probs=78.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcH
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNY 90 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~ 90 (249)
|++...++.||++|++.||++|.+|||+|++.+.+...+.+.+ .+++|+.++.. ..++......... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~--~~~~~~~~~~~~~--~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-----AGLEFVPIPGD--SRLPRSLEPLANL--RRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-----TT-EEEESSSC--GGGGHHHHHHHHH--HCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-----cCceEEEecCC--cCcCcccchhhhh--hhHH
Confidence 6889999999999999999999999999999999888777654 48999987631 0111000000000 0001
Q ss_pred HHHHHHHhcHHHHHHHHHhC----C--CCCcEEEecCCcccHHHHHhHcCCceEEEecchH
Q 041611 91 PIMTALGKLYDPIIDWFRSQ----A--NPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGW 145 (249)
Q Consensus 91 ~~~~~~~~l~~~l~~ll~~~----~--~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a 145 (249)
..........+.+++...+. . ...++++.+.....+..+|+++|||++.....+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 72 RLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11111222233333332222 1 1467788888777788999999999999877654
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.58 E-value=1.9e-07 Score=86.29 Aligned_cols=134 Identities=12% Similarity=0.163 Sum_probs=78.5
Q ss_pred CceEEEE-cCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCcc-----
Q 041611 8 TTHILIF-PYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENV----- 81 (249)
Q Consensus 8 ~~hvvl~-p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~----- 81 (249)
..+|+.+ |.++.+|++-+..++++|++|||+||++++.... ..... ...+++...++... +.........
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH--LCGNITEIDASLSV-EYFKKLVKSSAVFRK 95 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC--CCCCEEEEEcCCCh-HHHHHHHhhhhHHHh
Confidence 3457744 9999999999999999999999999999775321 11110 11456655544210 0000000000
Q ss_pred -ccCCC--CC----cHHHHHHHH-hc-HHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHc-CCceEEEecchH
Q 041611 82 -RELGN--RG----NYPIMTALG-KL-YDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQL-NIVRIAFFSSGW 145 (249)
Q Consensus 82 -~~~~~--~~----~~~~~~~~~-~l-~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~~~~~~a 145 (249)
..... .. ...+...++ .+ .+.+.+++++...++|+||+|.+...+..+|+.+ |+|.|..++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00000 00 011112222 22 4666777762112799999998877777899999 999887777544
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.35 E-value=4.6e-07 Score=81.50 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=47.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecC
Q 041611 8 TTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPF 68 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~ 68 (249)
+.+|+++..|..||++|.+.||++|.++||+|++++++...+.+.+. ++.|..++.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a-----g~~f~~~~~ 56 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA-----GLAFVAYPI 56 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh-----Ccceeeccc
Confidence 36899999999999999999999999999999999999887777663 466766653
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.25 E-value=7.8e-06 Score=70.80 Aligned_cols=118 Identities=22% Similarity=0.308 Sum_probs=69.0
Q ss_pred eEEEEc-CCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCC
Q 041611 10 HILIFP-YPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRG 88 (249)
Q Consensus 10 hvvl~p-~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~ 88 (249)
||++.. .-|.||+.-.+.|+++| +||+|+|++.....+.+.. .+....++.. +... ... .. +.
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~--~~~-~~--~~ 65 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP------RFPVREIPGL---GPIQ--ENG-RL--DR 65 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc------ccCEEEccCc---eEec--cCC-cc--ch
Confidence 566443 35999999999999999 6999999997754433322 2344444321 1110 000 00 11
Q ss_pred cHHHHH------HHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHH
Q 041611 89 NYPIMT------ALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWL 146 (249)
Q Consensus 89 ~~~~~~------~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~ 146 (249)
...... ........+.+++++. ++|+||+|.. +.+...|+..|+|++.+......
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLREF--RPDLVISDFY-PLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHc
Confidence 111111 1111222334445555 8999999953 44678889999999987766543
No 29
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.23 E-value=1e-05 Score=74.62 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=28.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPF 68 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~ 68 (249)
+|+++|+ +.||+++|..++++|++|||+||++++.... .+... ...+++++.++.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~--~~~~~~~~~~~~ 56 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS--KPSNIRFETYPD 56 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T--------S-CCEEEE--
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc--cccceeeEEEcC
Confidence 6888885 7899999999999999999999999875421 12111 114577777663
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.12 E-value=1.9e-05 Score=68.85 Aligned_cols=115 Identities=18% Similarity=0.115 Sum_probs=66.9
Q ss_pred EEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCce-EEEecCCCCCCCCCCCCccccCCCCCcHH
Q 041611 13 IFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIK-TLVLPFPSHPSIPPGIENVRELGNRGNYP 91 (249)
Q Consensus 13 l~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~-~~~lp~~~~~~lp~~~~~~~~~~~~~~~~ 91 (249)
.+...|.||+.|.+.++++|.+ ||+|+++++......++. .++. +...|.... ..+.+ . + +....
T Consensus 5 ~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~-~~~~~-~----~--~~~~~ 70 (321)
T TIGR00661 5 SVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-----YGFKVFETFPGIKL-KGEDG-K----V--NIVKT 70 (321)
T ss_pred EEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-----hcCcceeccCCceE-eecCC-c----C--cHHHH
Confidence 4667788999999999999999 999999987653222222 1222 222221000 00111 0 0 01111
Q ss_pred HHH--HH-HhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecch
Q 041611 92 IMT--AL-GKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSG 144 (249)
Q Consensus 92 ~~~--~~-~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~ 144 (249)
+.. .. ........+++++. +||+||+| +-..+..+|+.+|||++.+.-+.
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HHhhccccHHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 110 00 01112234566666 89999999 55666789999999999766543
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.72 E-value=0.00071 Score=59.87 Aligned_cols=118 Identities=13% Similarity=0.035 Sum_probs=71.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGN 89 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~ 89 (249)
+|++..-..-||+.|.+.+|++|.++||+|+|+++..-.+. ...+ ..++.+..++. .++.. . ..+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~-~~g~~~~~~~~---~~l~~----~-----~~~ 67 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE-KENIPYYSISS---GKLRR----Y-----FDL 67 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc-ccCCcEEEEec---cCcCC----C-----chH
Confidence 56777777779999999999999999999999997654321 1111 12566766652 12211 0 011
Q ss_pred HHHHHHHHhcH--HHHHHHHHhCCCCCcEEEecCCccc--HHHHHhHcCCceEEEecch
Q 041611 90 YPIMTALGKLY--DPIIDWFRSQANPPVAILSDFFLGW--TLKLAHQLNIVRIAFFSSG 144 (249)
Q Consensus 90 ~~~~~~~~~l~--~~l~~ll~~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~ 144 (249)
..+......+. -...+++++. +||+||....... +.-.|.-+|+|.++.-...
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~ 124 (352)
T PRK12446 68 KNIKDPFLVMKGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM 124 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC
Confidence 22221112111 1223456666 8999999664332 3566788999998866544
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.017 Score=51.25 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=71.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCC-cEEEEcCCCCccc-ccccccCCCCceEEEecCCCCCCCCCCCCccccCCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDL-DITILVTPKNLPI-LSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNR 87 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~-~VT~~~t~~~~~~-~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~ 87 (249)
.|++.-...-||+.|.+.|++.|.++|+ +|.++.+....+. +.. ..++.+..++.. ++. +. .
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~----~~~~~~~~I~~~---~~~-~~--------~ 65 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK----QYGIEFELIPSG---GLR-RK--------G 65 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc----ccCceEEEEecc---ccc-cc--------C
Confidence 3566666777999999999999999999 5777765544332 221 136777777632 221 10 0
Q ss_pred CcHHHHHHHHhc--HHHHHHHHHhCCCCCcEEEecCCcc--cHHHHHhHcCCceEEEecchH
Q 041611 88 GNYPIMTALGKL--YDPIIDWFRSQANPPVAILSDFFLG--WTLKLAHQLNIVRIAFFSSGW 145 (249)
Q Consensus 88 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~~~~~~a 145 (249)
.+..+...+..+ ....++++++. +||+||.=..+. .+.-.|..+|||.+.--+-..
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~ 125 (357)
T COG0707 66 SLKLLKAPFKLLKGVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV 125 (357)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC
Confidence 111122112211 23455667777 999999954433 334557789999998665443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.89 E-value=0.022 Score=49.71 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=67.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGN 89 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~ 89 (249)
+|++...-.-||......|++.|.++||+|++++....... . ... ..++++..++.. +.... ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~-~~~-~~~~~~~~~~~~---~~~~~---------~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R-LVP-KAGIPLHTIPVG---GLRRK---------GSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h-ccc-ccCCceEEEEec---CcCCC---------ChH
Confidence 35666666679999999999999999999999987542111 1 000 124677766632 11100 011
Q ss_pred HHHHHHHH--hcHHHHHHHHHhCCCCCcEEEecCC-ccc-HHHHHhHcCCceEEE
Q 041611 90 YPIMTALG--KLYDPIIDWFRSQANPPVAILSDFF-LGW-TLKLAHQLNIVRIAF 140 (249)
Q Consensus 90 ~~~~~~~~--~l~~~l~~ll~~~~~~~~~vI~D~~-~~~-~~~vA~~lgiP~v~~ 140 (249)
..+..... .....+.+++++. ++|+|++..- ..+ +...|...|+|.+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 11111111 1123455666666 8999998652 233 346678889999864
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.80 E-value=0.031 Score=49.11 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCC
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRG 88 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~ 88 (249)
++|+++.-..-||..-++.|++.|.++||+|++++....... .... ..+++++.++.. ++... ..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~--~~~~-~~g~~~~~~~~~---~~~~~---------~~ 66 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA--RLVP-KAGIEFHFIPSG---GLRRK---------GS 66 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh--hccc-cCCCcEEEEecc---CcCCC---------Ch
Confidence 467888776679999999999999999999999987542111 0000 125666666531 11110 00
Q ss_pred cHHHHHHHH--hcHHHHHHHHHhCCCCCcEEEecCC-cccH-HHHHhHcCCceEEE
Q 041611 89 NYPIMTALG--KLYDPIIDWFRSQANPPVAILSDFF-LGWT-LKLAHQLNIVRIAF 140 (249)
Q Consensus 89 ~~~~~~~~~--~l~~~l~~ll~~~~~~~~~vI~D~~-~~~~-~~vA~~lgiP~v~~ 140 (249)
...+..... .....+.+++++. ++|+|++... ..|. ..+++..++|.+..
T Consensus 67 ~~~l~~~~~~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 67 LANLKAPFKLLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 111111111 1123445666666 8999999863 3444 34566788999865
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.69 E-value=0.04 Score=47.99 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=67.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGN 89 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~ 89 (249)
+|+++..-..||+....+|++.|.++||+|++++.+.... ..... ..+++++.++.. ... + . ...
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~~-~~g~~~~~i~~~---~~~-~---~-----~~~ 66 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLVP-KAGIEFYFIPVG---GLR-R---K-----GSF 66 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcccc-cCCCceEEEecc---CcC-C---C-----ChH
Confidence 6888888888999987899999999999999997643211 01000 135666666531 110 0 0 001
Q ss_pred HHHHHHH--HhcHHHHHHHHHhCCCCCcEEEecCCcc-c-HHHHHhHcCCceEEE
Q 041611 90 YPIMTAL--GKLYDPIIDWFRSQANPPVAILSDFFLG-W-TLKLAHQLNIVRIAF 140 (249)
Q Consensus 90 ~~~~~~~--~~l~~~l~~ll~~~~~~~~~vI~D~~~~-~-~~~vA~~lgiP~v~~ 140 (249)
..+.... -.....+++++++. ++|+|++..... + +..+++..|+|.+.+
T Consensus 67 ~~l~~~~~~~~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 67 RLIKTPLKLLKAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 1111111 11123455667776 899999975432 2 334577789999864
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.22 E-value=0.016 Score=51.86 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCC
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRG 88 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~ 88 (249)
++|++..--.-||+.|. .|+++|.++|.+|+|+..... .++...- ...+++..++. .|+. + .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-~~~~~~~~l~v---~G~~---~--------~ 67 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-EVLYSMEELSV---MGLR---E--------V 67 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-ccccChHHhhh---ccHH---H--------H
Confidence 57888888888999999 999999999999999986533 2222100 01122222221 1111 0 0
Q ss_pred cHHHHHHHHhcHHHHHHHHHhCCCCCcEEEe-cCCc-ccH-HHHHhHcCCceEEE
Q 041611 89 NYPIMTALGKLYDPIIDWFRSQANPPVAILS-DFFL-GWT-LKLAHQLNIVRIAF 140 (249)
Q Consensus 89 ~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~-D~~~-~~~-~~vA~~lgiP~v~~ 140 (249)
+..+.. ........++++++. +||+||. |.-. ++. ...|+.+|||.+.+
T Consensus 68 l~~~~~-~~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 68 LGRLGR-LLKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHH-HHHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 111111 112223556666766 8999877 6421 222 24678899999987
No 37
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.10 E-value=0.13 Score=45.80 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHH---HhcH
Q 041611 24 PLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTAL---GKLY 100 (249)
Q Consensus 24 P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~---~~l~ 100 (249)
++.+||+.|+++||+|++++....... . .+++.+.++... ... . ... .....+.... ..+.
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~--~-----~~v~~~~~~~~~---~~~---~-~~~--~~~~~~~~~~~~~~~~~ 75 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPP--P-----GGVRVVRYRPPR---GPT---S-GTH--PYLREFEEAVLRGQAVA 75 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCC--C-----CCeeEEEecCCC---CCC---C-CCC--ccchhHHHHHHHHHHHH
Confidence 378899999999999999987654321 0 147777665321 011 0 000 1112222222 2223
Q ss_pred HHHHHHHHhCCCCCcEEEecCCcccHHHHHhHc-CCceEEEe
Q 041611 101 DPIIDWFRSQANPPVAILSDFFLGWTLKLAHQL-NIVRIAFF 141 (249)
Q Consensus 101 ~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~~~ 141 (249)
..+..+..+ .-+||.|++....+++..+.+.+ ++|.+.++
T Consensus 76 ~~~~~~~~~-~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 76 RALLALRAK-GFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHhc-CCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 333333221 12799999987655566666664 48888744
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.39 E-value=0.26 Score=44.46 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=39.5
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEec
Q 041611 8 TTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLP 67 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp 67 (249)
+.+|+++...-.|+-.=+..+|+.|+++||+||+++.......-... ...+++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~--~~~~v~~~~~~ 60 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL--SNPNITIHPLP 60 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh--cCCCEEEEECC
Confidence 45677777777777777889999999999999999865321110100 11467777665
No 39
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.37 E-value=0.051 Score=41.01 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHhcHHHHH
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYDPII 104 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 104 (249)
+.+|++.|+++||+||+++........... ..++++..+|.+. .+ ..... .. + ...+.
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~---~~~~~-----~~-~-------~~~~~ 64 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDEEE---EDGVRVHRLPLPR---RP---WPLRL-----LR-F-------LRRLR 64 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-SEE---ETTEEEEEE--S----SS---SGGGH-----CC-H-------HHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCcccccc---cCCceEEeccCCc---cc---hhhhh-----HH-H-------HHHHH
Confidence 678999999999999999965543321110 1467887776431 11 00000 01 1 12233
Q ss_pred HHH--HhCCCCCcEEEecCCc-ccHHHHHh-HcCCceEEEe
Q 041611 105 DWF--RSQANPPVAILSDFFL-GWTLKLAH-QLNIVRIAFF 141 (249)
Q Consensus 105 ~ll--~~~~~~~~~vI~D~~~-~~~~~vA~-~lgiP~v~~~ 141 (249)
+++ ++. ++|+|.+-... .+...+++ +.++|.+.-.
T Consensus 65 ~~l~~~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 65 RLLAARRE--RPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHhhhcc--CCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 443 333 89998876543 23345555 7889988654
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.21 E-value=0.14 Score=43.81 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcc---cccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHH
Q 041611 17 PAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP---ILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIM 93 (249)
Q Consensus 17 p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~---~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~ 93 (249)
-|.||+.=.+.||++|.++|++|+|++...... .+++ .++.+..++.. .+.+
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~-----~g~~v~~~~~~------~~~~-------------- 66 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS-----AGFPVYELPDE------SSRY-------------- 66 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH-----cCCeEEEecCC------Cchh--------------
Confidence 467999999999999999999999998765432 2222 35566655421 0000
Q ss_pred HHHHhcHHHHHHHHHhCCCCCcEEEecCCcccH--HHHHhHcCCceEEEe
Q 041611 94 TALGKLYDPIIDWFRSQANPPVAILSDFFLGWT--LKLAHQLNIVRIAFF 141 (249)
Q Consensus 94 ~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~~~ 141 (249)
+ =...+.+++++. ++|+||.|.+..-. ....+..+.+.+++-
T Consensus 67 ~----d~~~~~~~l~~~--~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iD 110 (279)
T TIGR03590 67 D----DALELINLLEEE--KFDILIVDHYGLDADWEKLIKEFGRKILVID 110 (279)
T ss_pred h----hHHHHHHHHHhc--CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEe
Confidence 0 011244455555 78999999864322 233334555555543
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.74 E-value=0.12 Score=45.72 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCC
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRG 88 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~ 88 (249)
.+|++...---||+.|.+ +++.|.++++++.++..... .+....- ...+.++.++. .++
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~l~~---~g~-------------- 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-ESLFDMEELAV---MGL-------------- 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-ccccCHHHhhh---ccH--------------
Confidence 468888888889999999 99999998887777764332 1221100 01122222211 010
Q ss_pred cHHHHHH--HHhcHHHHHHHHHhCCCCCcEEEe-cCCcccH--HHHHhHcCCceEEEec
Q 041611 89 NYPIMTA--LGKLYDPIIDWFRSQANPPVAILS-DFFLGWT--LKLAHQLNIVRIAFFS 142 (249)
Q Consensus 89 ~~~~~~~--~~~l~~~l~~ll~~~~~~~~~vI~-D~~~~~~--~~vA~~lgiP~v~~~~ 142 (249)
.+.+... .-.....+++++++. +||+|+. +.-..|. ...|++.|||.+.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~ 117 (380)
T PRK00025 61 VEVLPRLPRLLKIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVS 117 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeC
Confidence 0111111 111234566677777 8999866 4222344 3447788999887643
No 42
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=94.61 E-value=0.6 Score=39.91 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHH-H
Q 041611 19 QGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTAL-G 97 (249)
Q Consensus 19 ~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~-~ 97 (249)
-|+-.-...|++.|+++||+|+++++.......... ..+......... .... .... .......... .
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~--~~~~----~~~~~~~~~~~~ 82 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKE---VIGVVVYGRPID---EVLR--SALP----RDLFHLSDYDNP 82 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccc---cccceeeccccc---cccC--CCch----hhhhHHHhccCH
Confidence 478888999999999999999999876543221110 011111111000 0000 0000 0000111111 2
Q ss_pred hcHHHHHHHHHhCCCCCcEEEecCCcccH---HHHHhHcCCceEEEe
Q 041611 98 KLYDPIIDWFRSQANPPVAILSDFFLGWT---LKLAHQLNIVRIAFF 141 (249)
Q Consensus 98 ~l~~~l~~ll~~~~~~~~~vI~D~~~~~~---~~vA~~lgiP~v~~~ 141 (249)
.+...+++++++. ++|+|++.....+. ...+++.++|.+...
T Consensus 83 ~~~~~~~~~~~~~--~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 83 AVVAEFARLLEDF--RPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred HHHHHHHHHHHHc--CCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 3345667777776 89999887755443 245788999998854
No 43
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.46 E-value=0.37 Score=42.27 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCceEEEEcC--CCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCcccccccccCCCCceEEEecC
Q 041611 7 RTTHILIFPY--PAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLPILSPLLDAHPAIKTLVLPF 68 (249)
Q Consensus 7 ~~~hvvl~p~--p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~ 68 (249)
+.++|++..- .+-||+-=++.+|+.|+.. |++|++++......-+.. ..+++++.+|.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~----~~gVd~V~LPs 69 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG----PAGVDFVKLPS 69 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC----cccCceEecCc
Confidence 3558888875 5779999999999999986 999999997655433322 15799999884
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.35 E-value=0.48 Score=41.67 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHh
Q 041611 19 QGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGK 98 (249)
Q Consensus 19 ~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 98 (249)
-|+-..+.+|++.|+++||+|+++++......... .....++++..++.. +....... .....+. .
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~----~ 86 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPI-VELAPGVRVVRVPAG-----PAEYLPKE----ELWPYLD----E 86 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCc-cccccceEEEecccc-----cccCCChh----hcchhHH----H
Confidence 36788999999999999999999986543221110 000135666655431 11000000 0011111 1
Q ss_pred cHHHHHHHHHhCCCCCcEEEecCCc-cc-HHHHHhHcCCceEEE
Q 041611 99 LYDPIIDWFRSQANPPVAILSDFFL-GW-TLKLAHQLNIVRIAF 140 (249)
Q Consensus 99 l~~~l~~ll~~~~~~~~~vI~D~~~-~~-~~~vA~~lgiP~v~~ 140 (249)
....+.+.++....++|+|++.... .+ +..+++++|+|++..
T Consensus 87 ~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 87 FADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 1111222222221278999886533 33 346788899998864
No 45
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=94.24 E-value=0.7 Score=34.40 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=57.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcH
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNY 90 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~ 90 (249)
|+++.--...| ..++++.|.++|++|++++.....+.... ..++++..++.. - . ....
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~----~~~i~~~~~~~~------~--k-------~~~~ 59 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI----IEGIKVIRLPSP------R--K-------SPLN 59 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH----hCCeEEEEecCC------C--C-------ccHH
Confidence 55555544455 56889999999999999998543222111 146777766421 0 0 0011
Q ss_pred HHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcc-cH-HHH-HhHcC-CceEE
Q 041611 91 PIMTALGKLYDPIIDWFRSQANPPVAILSDFFLG-WT-LKL-AHQLN-IVRIA 139 (249)
Q Consensus 91 ~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~-~~-~~v-A~~lg-iP~v~ 139 (249)
.+ . +. .+.+++++. ++|.|.+-...+ +. ..+ +...| +|.+.
T Consensus 60 ~~----~-~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 60 YI----K-YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred HH----H-HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 11 1 22 567777777 899997766544 22 233 35566 66663
No 46
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.99 E-value=0.89 Score=39.61 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=29.4
Q ss_pred eEEEEcCCC-CCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 10 HILIFPYPA-QGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 10 hvvl~p~p~-~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
+|+++.+|. -|.-.-..+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 456555543 4777889999999999999999998754
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.64 E-value=0.77 Score=39.35 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=26.3
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 19 QGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 19 ~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
-|+-+.+..|+++|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 58999999999999999999999997643
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=93.34 E-value=1.6 Score=37.44 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 19 QGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 19 ~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
.|+-.-...+++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 58999999999999999999999987544
No 49
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=93.25 E-value=1.7 Score=39.80 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=59.5
Q ss_pred CCCceEEEEcCC----C-CCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCc
Q 041611 6 TRTTHILIFPYP----A-QGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIEN 80 (249)
Q Consensus 6 ~~~~hvvl~p~p----~-~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~ 80 (249)
.++.||+++..+ . -|=-+=+.+|++.|.++||+|+++++...... . ..++++..+... .++. ..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~--~----~~g~~v~~~~~~---~~~~-~~- 124 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ--E----FHGAKVIGSWSF---PCPF-YQ- 124 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc--c----ccCceeeccCCc---CCcc-CC-
Confidence 346789977432 2 23335678999999999999999997543210 0 123443322110 0110 00
Q ss_pred cccCCCCCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCC--cccH-HHHHhHcCCceEEE
Q 041611 81 VRELGNRGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFF--LGWT-LKLAHQLNIVRIAF 140 (249)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~--~~~~-~~vA~~lgiP~v~~ 140 (249)
... . .+ .....+.+++++. ++|+|.+-.. ..|+ ..+|+..|+|.++.
T Consensus 125 --~~~---~-~~-----~~~~~l~~~i~~~--kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~ 174 (465)
T PLN02871 125 --KVP---L-SL-----ALSPRIISEVARF--KPDLIHASSPGIMVFGALFYAKLLCVPLVMS 174 (465)
T ss_pred --Cce---e-ec-----cCCHHHHHHHHhC--CCCEEEECCCchhHHHHHHHHHHhCCCEEEE
Confidence 000 0 00 0112345566666 8998865432 2333 35678899999873
No 50
>PRK10307 putative glycosyl transferase; Provisional
Probab=93.16 E-value=1.6 Score=39.03 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCCcEEEEcCCC
Q 041611 25 LLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~ 46 (249)
+.+|++.|.++||+||++++..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999763
No 51
>PLN00142 sucrose synthase
Probab=92.52 E-value=1.6 Score=42.87 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHHHHHhhCCCcEE----EEcCCCCccc-------ccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHH
Q 041611 27 DLTHQLSLKDLDIT----ILVTPKNLPI-------LSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTA 95 (249)
Q Consensus 27 ~La~~La~~G~~VT----~~~t~~~~~~-------~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~ 95 (249)
+|+++|+++|++|+ ++|--..... +.. ....++.+++.+|+-+ ..+.- ...++. +.+...
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~-v~~~~~~~I~rvP~g~----~~~~l-~~~i~k---e~l~p~ 389 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEK-VSGTEHSHILRVPFRT----EKGIL-RKWISR---FDVWPY 389 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCccee-ccCCCceEEEecCCCC----Ccccc-ccccCH---HHHHHH
Confidence 35578888999875 7763221111 111 1112467777777521 11110 011111 122233
Q ss_pred HHhcHHHHHH-HHHhCCCCCcEEEecCCcc-cH-HHHHhHcCCceEEEec
Q 041611 96 LGKLYDPIID-WFRSQANPPVAILSDFFLG-WT-LKLAHQLNIVRIAFFS 142 (249)
Q Consensus 96 ~~~l~~~l~~-ll~~~~~~~~~vI~D~~~~-~~-~~vA~~lgiP~v~~~~ 142 (249)
+..+...+.+ +.++...+||+|.+.+..+ ++ ..+|+++|||.+...-
T Consensus 390 L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 390 LETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 3444433433 3333434799999987664 55 5889999999996443
No 52
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=92.32 E-value=4.4 Score=39.74 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHH--------HhhCCC----cEEEEcCCCCccc-------ccccccCCCCceEEEecCCCCCCCCCCCC
Q 041611 19 QGHMLPLLDLTHQ--------LSLKDL----DITILVTPKNLPI-------LSPLLDAHPAIKTLVLPFPSHPSIPPGIE 79 (249)
Q Consensus 19 ~GHi~P~l~La~~--------La~~G~----~VT~~~t~~~~~~-------~~~~~~~~~~i~~~~lp~~~~~~lp~~~~ 79 (249)
-|+..=.++||++ |+++|| +|+++|-...... +.. ....++++++.+|+.+ +.+..
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~-~~~~~~~~I~rvp~g~----~~~~~ 353 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK-VYGTEHAWILRVPFRT----ENGII 353 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc-ccCCCceEEEEecCCC----Ccccc
Confidence 4666677888886 568899 6778885432111 111 1112578888777531 11100
Q ss_pred ccccCCCCCcHHHHHHHHhcHHHHHH-HHHhCCCCCcEEEecCCcc-cH-HHHHhHcCCceE-EEe
Q 041611 80 NVRELGNRGNYPIMTALGKLYDPIID-WFRSQANPPVAILSDFFLG-WT-LKLAHQLNIVRI-AFF 141 (249)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~l~~-ll~~~~~~~~~vI~D~~~~-~~-~~vA~~lgiP~v-~~~ 141 (249)
...-++ -..+...+..+...+.+ +.++...+||+|++....+ ++ ..+|+++|||.+ +++
T Consensus 354 ~~~~i~---k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t~H 416 (784)
T TIGR02470 354 LRNWIS---RFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTIAH 416 (784)
T ss_pred cccccC---HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEECC
Confidence 000111 11223333444434433 3333334799999977653 54 478899999955 444
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=91.17 E-value=3.1 Score=35.19 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=60.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcH
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNY 90 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~ 90 (249)
|+++.....|+..-+.+|++.|.++||+|++++.......... ..+++...++.. . .. . ....
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~---~--~~---~-----~~~~ 64 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE----ALGVKVIPIPLD---R--RG---I-----NPFK 64 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc----cCCceEEecccc---c--cc---c-----ChHh
Confidence 5555555778889999999999999999999997755332000 135666655421 0 00 0 0011
Q ss_pred HHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccH-HHH-HhHcCCceEEEe
Q 041611 91 PIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWT-LKL-AHQLNIVRIAFF 141 (249)
Q Consensus 91 ~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~-~~v-A~~lgiP~v~~~ 141 (249)
.+. . ...+.+++++. ++|+|++.....+. ..+ ++..+.+.++++
T Consensus 65 ~~~-~----~~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 65 DLK-A----LLRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred HHH-H----HHHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 111 1 12344555555 89998887554332 333 443666655554
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=91.04 E-value=2.7 Score=35.92 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=28.0
Q ss_pred cCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 15 PYPAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 15 p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
|....|+-.-...+++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 334568999999999999999999999987543
No 55
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=90.77 E-value=4.2 Score=36.93 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHhhCCC--cEEEEcCCCCcc----cc-cccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHH
Q 041611 21 HMLPLLDLTHQLSLKDL--DITILVTPKNLP----IL-SPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIM 93 (249)
Q Consensus 21 Hi~P~l~La~~La~~G~--~VT~~~t~~~~~----~~-~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~ 93 (249)
=-.-+.+|+++|+++|| +|+++|...... .. ........+++++.++.. +..... ...+.
T Consensus 28 ~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~-----~~~~~~--------~~~~~ 94 (439)
T TIGR02472 28 QTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFG-----PRRYLR--------KELLW 94 (439)
T ss_pred cchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCC-----CCCCcC--------hhhhh
Confidence 33557899999999997 999999532211 00 000000146777766531 100000 01111
Q ss_pred HHHHhcHHHHHHHHHhCCCCCcEEEecCCc-ccH-HHHHhHcCCceEEEec
Q 041611 94 TALGKLYDPIIDWFRSQANPPVAILSDFFL-GWT-LKLAHQLNIVRIAFFS 142 (249)
Q Consensus 94 ~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~-~~~-~~vA~~lgiP~v~~~~ 142 (249)
..+..+...+.+++++...++|+|-+-.+. .+. ..+++.+|+|+|...-
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H 145 (439)
T TIGR02472 95 PYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGH 145 (439)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecc
Confidence 112233344445555432269999876532 333 3556779999977543
No 56
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=89.89 E-value=6.5 Score=39.80 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHhhCC--CcEEEEcCCC
Q 041611 20 GHMLPLLDLTHQLSLKD--LDITILVTPK 46 (249)
Q Consensus 20 GHi~P~l~La~~La~~G--~~VT~~~t~~ 46 (249)
|+..=.++||++|+++| |+|+++|-..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~ 224 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQV 224 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 46666799999999998 8999999644
No 57
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=89.68 E-value=6.5 Score=34.89 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHH
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALG 97 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 97 (249)
.-|.-.=..+||++|+++||+||++++......-.. .....++++..++... .. + . ....+.....
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~-~-~--------~~~~~~~~~~ 84 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPV-VEVAPGVRVRNVVAGP---YE-G-L--------DKEDLPTQLC 84 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCc-cccCCCcEEEEecCCC---cc-c-C--------CHHHHHHHHH
Confidence 346668889999999999999999997543211000 0001467776554210 00 0 0 0011111111
Q ss_pred h-cHHHHHHHHHhCCCCCcEEEecCC-cccH-HHHHhHcCCceEEEec
Q 041611 98 K-LYDPIIDWFRSQANPPVAILSDFF-LGWT-LKLAHQLNIVRIAFFS 142 (249)
Q Consensus 98 ~-l~~~l~~ll~~~~~~~~~vI~D~~-~~~~-~~vA~~lgiP~v~~~~ 142 (249)
. ....++.+++....++|+|-+..+ ..|. ..+++.+++|.+..+-
T Consensus 85 ~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 85 AFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred HHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 1 122344444433237898866543 2333 4556779999887554
No 58
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=89.20 E-value=4.6 Score=35.95 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHhc
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKL 99 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~l 99 (249)
|--.=..+|++.|+++||+|+++++......-.... ..+++++.+|.. ..... .. ...+.. .
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~--~~~i~v~~~p~~---~~~~~----~~-----~~~~~~----~ 76 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYL--TNGLKVYYLPFV---VFYNQ----ST-----LPTFFG----T 76 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccc--cCceeEEEecce---eccCC----cc-----ccchhh----h
Confidence 445678999999999999999999753211100100 135666666632 11110 00 001111 1
Q ss_pred HHHHHHHHHhCCCCCcEEEecC-Cccc---HHHHHhHcCCceEEE
Q 041611 100 YDPIIDWFRSQANPPVAILSDF-FLGW---TLKLAHQLNIVRIAF 140 (249)
Q Consensus 100 ~~~l~~ll~~~~~~~~~vI~D~-~~~~---~~~vA~~lgiP~v~~ 140 (249)
...+++++.+. ++|+|-+-. ...+ +...++.+|+|.+..
T Consensus 77 ~~~l~~~~~~~--~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 77 FPLLRNILIRE--RITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHHHHHHHHhc--CCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 12345555555 899886653 3233 245578899998864
No 59
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=87.27 E-value=13 Score=29.39 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=49.5
Q ss_pred hCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHH---HhcHHHHHHHHHhC
Q 041611 34 LKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTAL---GKLYDPIIDWFRSQ 110 (249)
Q Consensus 34 ~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~ll~~~ 110 (249)
++||+|++++...+... . ++++.+.+... .+-..+.. .....+...+ +.....+.+|.++
T Consensus 1 q~gh~v~fl~~~~~~~~-~------~GV~~~~y~~~--~~~~~~~~-------~~~~~~e~~~~rg~av~~a~~~L~~~- 63 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P------PGVRVVRYRPP--RGPTPGTH-------PYVRDFEAAVLRGQAVARAARQLRAQ- 63 (171)
T ss_pred CCCCEEEEEecCCCCCC-C------CCcEEEEeCCC--CCCCCCCC-------cccccHHHHHHHHHHHHHHHHHHHHc-
Confidence 47999999995444221 1 37887766532 11111100 0111122221 2233444444443
Q ss_pred CCCCcEEEecCCcccHHHHHhHc-CCceEEEe
Q 041611 111 ANPPVAILSDFFLGWTLKLAHQL-NIVRIAFF 141 (249)
Q Consensus 111 ~~~~~~vI~D~~~~~~~~vA~~l-giP~v~~~ 141 (249)
.-.||+||...-.+.++-+-..+ ++|.+.+.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 23789999987666667777777 88888764
No 60
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=87.18 E-value=6.7 Score=34.53 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHhcH
Q 041611 21 HMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLY 100 (249)
Q Consensus 21 Hi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (249)
|+.=+-++.++|.++||+|.+.+-.... ....++ .-++.+..+.- .+ . .....+.....+..
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~~~--~~~LL~-~yg~~y~~iG~-------~g-~-------~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDKDE--TEELLD-LYGIDYIVIGK-------HG-D-------SLYGKLLESIERQY 73 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeccch--HHHHHH-HcCCCeEEEcC-------CC-C-------CHHHHHHHHHHHHH
Confidence 8888999999999999999888754321 111111 13566665541 11 1 11223333322222
Q ss_pred HHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHHHH
Q 041611 101 DPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWLLA 148 (249)
Q Consensus 101 ~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~ 148 (249)
.+-+++++. +||++|+- ....+..+|.-+|+|.+.|.=..-+..
T Consensus 74 -~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~ 117 (335)
T PF04007_consen 74 -KLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA 117 (335)
T ss_pred -HHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc
Confidence 233444445 89999962 234456799999999999987655443
No 61
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=84.58 E-value=14 Score=31.07 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHh
Q 041611 19 QGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGK 98 (249)
Q Consensus 19 ~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 98 (249)
-|+-.-+..|++.|.+.||+|++++............ ...... .. . . . ...... .....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~---~~~~~~-------~~-~-~----~----~~~~~~-~~~~~ 72 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV---GGIVVV-------RP-P-P----L----LRVRRL-LLLLL 72 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee---cCccee-------cC-C-c----c----cccchh-HHHHH
Confidence 6889999999999999999999999865432211100 000000 00 0 0 0 000000 00111
Q ss_pred cHHHHHHHHHhCCCCCcEEEecCCcccHH--HHHhHcCCceEEEecc
Q 041611 99 LYDPIIDWFRSQANPPVAILSDFFLGWTL--KLAHQLNIVRIAFFSS 143 (249)
Q Consensus 99 l~~~l~~ll~~~~~~~~~vI~D~~~~~~~--~vA~~lgiP~v~~~~~ 143 (249)
....+..++++. ++|.|+......+.. ..+...++|.+...-.
T Consensus 73 ~~~~~~~~~~~~--~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374)
T cd03801 73 LALRLRRLLRRE--RFDVVHAHDWLALLAAALAARLLGIPLVLTVHG 117 (374)
T ss_pred HHHHHHHHhhhc--CCcEEEEechhHHHHHHHHHHhcCCcEEEEecc
Confidence 223445555555 799998876654443 4778899998876544
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=83.84 E-value=15 Score=30.67 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 19 QGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 19 ~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
-|...-+..|++.|+++||+|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 45557788999999999999999987654
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=83.78 E-value=8.3 Score=33.10 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCCCCccc-ccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHh
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTPKNLPI-LSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGK 98 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~~~~~~-~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 98 (249)
|--.-..+||+.|+++||+|++++....... +. ..+++++.++.. .. .....+ ..
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~------~~---------~~~~~~-~~--- 66 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAELE-----AEGSRHIKLPFI------SK---------NPLRIL-LN--- 66 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHH-----hcCCeEEEcccc------cc---------chhhhH-HH---
Confidence 4446788999999999999999986532111 11 124555554421 00 000111 11
Q ss_pred cHHHHHHHHHhCCCCCcEEEecCC-cccHH-HHHhHcCCceEEEecc
Q 041611 99 LYDPIIDWFRSQANPPVAILSDFF-LGWTL-KLAHQLNIVRIAFFSS 143 (249)
Q Consensus 99 l~~~l~~ll~~~~~~~~~vI~D~~-~~~~~-~vA~~lgiP~v~~~~~ 143 (249)
...+.+++++. ++|+|++... ..|.. ..++..++|.+..+..
T Consensus 67 -~~~l~~~~~~~--~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 110 (355)
T cd03819 67 -VARLRRLIREE--KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHG 110 (355)
T ss_pred -HHHHHHHHHHc--CCCEEEECCCchhHHHHHHHHhcCCCEEEEeCC
Confidence 12234455555 8999988653 34554 4467789998875543
No 64
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=83.49 E-value=18 Score=30.75 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
|--.-...|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 444678999999999999999999754
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=83.05 E-value=32 Score=30.32 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=36.6
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCC-cEEEEcCCCCcccccccccCCCCceEEEec
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDL-DITILVTPKNLPILSPLLDAHPAIKTLVLP 67 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~-~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp 67 (249)
.+.||++. +-.|.---|..++++|+++|+ +||+++-......... . ...+++++.++
T Consensus 5 ~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~-~-~~~~v~v~r~~ 62 (371)
T PLN02275 5 GRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL-L-NHPSIHIHLMV 62 (371)
T ss_pred cEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH-h-cCCcEEEEECC
Confidence 45566554 677778888999999999885 7999975433211110 0 01457777665
No 66
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=82.53 E-value=14 Score=31.17 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=19.6
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
+..|++.|. .+.+||++.+..+.+-
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 456777887 8999999999877543
No 67
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.26 E-value=24 Score=30.27 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=30.1
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEec
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLP 67 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp 67 (249)
|=-.-..+|+++|.++||+|++++.......... ...+++++.++
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~---~~~~i~~~~~~ 60 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPYPKQKET---EYNGVRLIHIP 60 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCCCCCccc---ccCCceEEEcC
Confidence 3346678999999999999999997643221111 11467777665
No 68
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=80.57 E-value=1.8 Score=32.87 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
|=-.-+.+|+++|+++||+||+++....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 4456789999999999999999976544
No 69
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.40 E-value=1.8 Score=37.02 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=32.6
Q ss_pred eEEEEc----CCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcc
Q 041611 10 HILIFP----YPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP 49 (249)
Q Consensus 10 hvvl~p----~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~ 49 (249)
||++++ --|.||+.=++.||+.|..+|+.++|++.+.+..
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 455543 3467999999999999999999999999877544
No 70
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=78.77 E-value=4.4 Score=30.74 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=38.6
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
++++||+...++-+|-.-..-++..|.++|++|+++...-..+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~ 45 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEE 45 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 56789999999999999999999999999999999987655443
No 71
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.47 E-value=4.2 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=33.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
+|++.+.++-.|-..+.-++..|.++|++|.++.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~ 38 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVP 38 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 47899999999999999999999999999988875433
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=76.72 E-value=4.3 Score=35.90 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=30.1
Q ss_pred CceEEEEcCC-CCCChHHHHHHHHHHhhCCCcEEEEcC
Q 041611 8 TTHILIFPYP-AQGHMLPLLDLTHQLSLKDLDITILVT 44 (249)
Q Consensus 8 ~~hvvl~p~p-~~GHi~P~l~La~~La~~G~~VT~~~t 44 (249)
.++|+++..- +.||..+...|+++|.++|++|.++..
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d 41 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCD 41 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 4578877765 559999999999999999998666654
No 73
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=76.17 E-value=39 Score=28.66 Aligned_cols=27 Identities=11% Similarity=-0.060 Sum_probs=18.1
Q ss_pred HHHHHHHHhhC---CCcEEEEcCCCCcccc
Q 041611 25 LLDLTHQLSLK---DLDITILVTPKNLPIL 51 (249)
Q Consensus 25 ~l~La~~La~~---G~~VT~~~t~~~~~~~ 51 (249)
+..|++.|... |++|+++.+....+-.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ 45 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGV 45 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCC
Confidence 45577777663 3699999987665433
No 74
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=75.79 E-value=40 Score=28.31 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
..|+-.-+..+++.|.+.|++|++++....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 468888899999999999999999997654
No 75
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=75.51 E-value=13 Score=33.46 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=57.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCc--EEEEcC-CCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLD--ITILVT-PKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN 86 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~--VT~~~t-~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~ 86 (249)
.++-+-..+.|.++-...|+++|.+++.+ |.+.++ ....+..++.. ..++..+.+|. +.+
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~--~~~~~~~~~P~----d~~----------- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALF--GDDVEHRYLPY----DLP----------- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhc--CCCceEEEecC----CcH-----------
Confidence 45677788889999999999999987644 433322 11111121110 12344444442 011
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccH--HHHHhHcCCceEEEe
Q 041611 87 RGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWT--LKLAHQLNIVRIAFF 141 (249)
Q Consensus 87 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~~~ 141 (249)
..++++++.. +||+++.-..-.|. ...+++.|+|.+...
T Consensus 114 --------------~~~~~~l~~~--~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 --------------GAVRRFLRFW--RPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred --------------HHHHHHHHhh--CCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 2345556666 89988754222343 456788999999864
No 76
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=72.36 E-value=43 Score=28.50 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=19.5
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
+..|++.|...| +|+++.+....+-
T Consensus 16 i~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 16 LRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred HHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 667889998888 8999988766443
No 77
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=71.34 E-value=7 Score=34.34 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=25.9
Q ss_pred eEE-EEcCCCCCCh-HHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 10 HIL-IFPYPAQGHM-LPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 10 hvv-l~p~p~~GHi-~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
+|+ +.|....|=. .-+..||++|+++||+||++++..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 455 3344333333 446899999999999999999743
No 78
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=70.13 E-value=7.8 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
.-|+..-..+|++.|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 458999999999999999999999987654
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=69.83 E-value=37 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 17 PAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 17 p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
..-|.-.-+..+++.|+++||+||+++....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 4557888899999999999999999997543
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=68.85 E-value=6 Score=33.98 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=24.9
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
.-|+.....+|++.|.++||+|++++..
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 3588899999999999999999999754
No 81
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=68.69 E-value=64 Score=27.16 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
+..|++.|.+. ++|+++.+....+-
T Consensus 16 i~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 16 IRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 66788889887 69999988766443
No 82
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=67.04 E-value=52 Score=29.66 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhC--CCcEEEEcCCCCccc---c---ccccc--CCCCceEEEec-CCCCCCCCCCCCccccCCCCCcHH
Q 041611 23 LPLLDLTHQLSLK--DLDITILVTPKNLPI---L---SPLLD--AHPAIKTLVLP-FPSHPSIPPGIENVRELGNRGNYP 91 (249)
Q Consensus 23 ~P~l~La~~La~~--G~~VT~~~t~~~~~~---~---~~~~~--~~~~i~~~~lp-~~~~~~lp~~~~~~~~~~~~~~~~ 91 (249)
--+...++.|.++ |++||++|+...+.. + .+... ...+++++.+. .- ..++.. ..+ .+..
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~--~~~~~~-----~~~--r~~~ 88 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYR--KLVEAS-----TYP--RFTL 88 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecce--eeeccc-----cCC--ceee
Confidence 3467788888887 899999998765432 1 11000 01344544331 10 111211 000 1112
Q ss_pred HHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhH-cCCceEEEecc
Q 041611 92 IMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQ-LNIVRIAFFSS 143 (249)
Q Consensus 92 ~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~-lgiP~v~~~~~ 143 (249)
+.+....+.-.++.+. .. +||++|.+.-.+.+..+++. .++|.+.+.-.
T Consensus 89 ~~~~~~~~~~~~~~~~-~~--~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~ 138 (419)
T cd03806 89 LGQALGSMILGLEALL-KL--VPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHY 138 (419)
T ss_pred HHHHHHHHHHHHHHHH-hc--CCCEEEEcCCcccHHHHHHHhcCCeEEEEecC
Confidence 2222233333333332 23 69988888766766677665 47888776543
No 83
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=64.95 E-value=74 Score=25.83 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=28.3
Q ss_pred EcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCc
Q 041611 14 FPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNL 48 (249)
Q Consensus 14 ~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~ 48 (249)
.-....|--.=+++-+++...+|-+|.++++....
T Consensus 10 ~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 10 YGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred EccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 33445688899999999999999999999876543
No 84
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.94 E-value=16 Score=26.29 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=33.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
++++...+..-|-.-+.-++..|.++||+|.++....
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 6889999999999999999999999999999986544
No 85
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=62.68 E-value=14 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=35.0
Q ss_pred hcHHHHHHHHHhCCCCCcEEEecCCccc-----HHHHHhHcCCceEEEecch
Q 041611 98 KLYDPIIDWFRSQANPPVAILSDFFLGW-----TLKLAHQLNIVRIAFFSSG 144 (249)
Q Consensus 98 ~l~~~l~~ll~~~~~~~~~vI~D~~~~~-----~~~vA~~lgiP~v~~~~~~ 144 (249)
.+++.++++|++. .++-+||-|.|..- ..+.|.+.+||+|++.-..
T Consensus 134 ~IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 134 HIKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CHHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 4567777877776 38999999998742 3466779999999987643
No 86
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=62.23 E-value=93 Score=26.03 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.9
Q ss_pred CCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 16 YPAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 16 ~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
+..-|+-..+..|++.|.+.|++|.+++....
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 34468999999999999999999999986543
No 87
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=62.02 E-value=73 Score=28.21 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=30.4
Q ss_pred hcHHHHHHHHHhCCCCCcEEEe--cCCcccH-HHHHhHcCCceEEEecc
Q 041611 98 KLYDPIIDWFRSQANPPVAILS--DFFLGWT-LKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 98 ~l~~~l~~ll~~~~~~~~~vI~--D~~~~~~-~~vA~~lgiP~v~~~~~ 143 (249)
.+...+.+++++. +||+|++ |.+..-+ .-+|..+|||++.+.-.
T Consensus 80 ~~~~~~~~~~~~~--~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 80 LTIIGFSDAFERL--KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 3445666777776 8998876 4554434 57788999999966544
No 88
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=60.86 E-value=14 Score=31.77 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=30.3
Q ss_pred eEEEEcC-CC-CCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 10 HILIFPY-PA-QGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 10 hvvl~p~-p~-~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
+|+++.. +. -|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 5665544 34 58889999999999999999999987543
No 89
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=60.73 E-value=16 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
.-|.-.-..+|++.|..+||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 458888899999999999999999997654
No 90
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=59.91 E-value=41 Score=28.82 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCcEEEEcCC
Q 041611 26 LDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~t~ 45 (249)
+.+++.|+++|++|+.+..+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHCCCEEEEEecc
Confidence 57899999999999999865
No 91
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=59.70 E-value=17 Score=29.28 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=36.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcc
Q 041611 8 TTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP 49 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~ 49 (249)
+.+|++.+.++-.|-....-++..|.++|++|+++...-..+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~ 123 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPE 123 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 578999999999999999999999999999999887654433
No 92
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=59.57 E-value=13 Score=29.07 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEc
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
.-||-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999998
No 93
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=59.02 E-value=87 Score=28.48 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=64.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEc-CCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILV-TPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN 86 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~-t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~ 86 (249)
-.+-+-..+.|-++-...|.++|.++ +..|++.+ |+.-.+.+++... ..+....+|. +++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~----D~~----------- 112 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPL----DLP----------- 112 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCc----Cch-----------
Confidence 47778888999999999999999998 88877766 4433333333221 2355555553 111
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHhCCCCCcE-EEecCCc-ccHHHHHhHcCCceEEEec
Q 041611 87 RGNYPIMTALGKLYDPIIDWFRSQANPPVA-ILSDFFL-GWTLKLAHQLNIVRIAFFS 142 (249)
Q Consensus 87 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~-vI~D~~~-~~~~~vA~~lgiP~v~~~~ 142 (249)
..++++++.. +|++ ||.+.=+ +-...-+++.|+|.+....
T Consensus 113 --------------~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 113 --------------IAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred --------------HHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 2355666666 7774 5555532 2234678899999998765
No 94
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=58.61 E-value=1e+02 Score=25.94 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=18.2
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCC
Q 041611 25 LLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~ 47 (249)
-.+|+++|.++|++|+..+....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCC
Confidence 56899999999999888765443
No 95
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=57.76 E-value=19 Score=28.95 Aligned_cols=44 Identities=9% Similarity=-0.059 Sum_probs=38.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
.+.+|++.+.++-.|-....-++..|.++|++|+++...-..+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~ 126 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDT 126 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHH
Confidence 45789999999999999999999999999999999987655443
No 96
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.58 E-value=22 Score=26.07 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=35.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP 49 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~ 49 (249)
|||+...++-.|-.-..-++..|..+|++|.+..+....+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 5899999999999999999999999999999998764433
No 97
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=56.56 E-value=1.3e+02 Score=26.19 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=57.0
Q ss_pred ceEE-EEcCCCCCCh-HHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCC
Q 041611 9 THIL-IFPYPAQGHM-LPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN 86 (249)
Q Consensus 9 ~hvv-l~p~p~~GHi-~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~ 86 (249)
+.|+ +++....|-. +-++.|++.|..+|+++++++..... .+..... ..+++++.++.. ..
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~~-~~~i~~~~~~~~------~~--------- 64 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRIQ-RPDVAFYALHKQ------PG--------- 64 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHHH-hcCceEEEeCCC------CC---------
Confidence 3444 5555555544 88999999999999999888743221 1111000 135676665421 00
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcc-cHHHHHhHcCCceEE
Q 041611 87 RGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLG-WTLKLAHQLNIVRIA 139 (249)
Q Consensus 87 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~-~~~~vA~~lgiP~v~ 139 (249)
..+..+ ..+.+++++. ++|+|-+-.... ++.-++...|+|..+
T Consensus 65 ~~~~~~--------~~l~~~l~~~--~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 65 KDVAVY--------PQLYRLLRQL--RPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred CChHHH--------HHHHHHHHHh--CCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 011111 1244555555 899887654322 234456678888643
No 98
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=56.53 E-value=24 Score=28.24 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecC
Q 041611 23 LPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPF 68 (249)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~ 68 (249)
.-.-+|+.+|+++|++||+.+.......-.. ...+++.+.+|.
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~---~y~gv~l~~i~~ 63 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEF---EYNGVRLVYIPA 63 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCc---ccCCeEEEEeCC
Confidence 3445788899999999999987654322111 125788887764
No 99
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=54.37 E-value=1e+02 Score=24.12 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHH-hhCCCcEEEEcCC
Q 041611 17 PAQGHMLPLLDLTHQL-SLKDLDITILVTP 45 (249)
Q Consensus 17 p~~GHi~P~l~La~~L-a~~G~~VT~~~t~ 45 (249)
.+-||..=|+.|.+.+ .++....+++.+.
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~ 35 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTE 35 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEc
Confidence 3459999999999999 4444445554443
No 100
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=54.27 E-value=78 Score=27.38 Aligned_cols=39 Identities=13% Similarity=-0.128 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCCcEEEecC--CcccH-HHHHhHcCCceEEEe
Q 041611 101 DPIIDWFRSQANPPVAILSDF--FLGWT-LKLAHQLNIVRIAFF 141 (249)
Q Consensus 101 ~~l~~ll~~~~~~~~~vI~D~--~~~~~-~~vA~~lgiP~v~~~ 141 (249)
..+.+.+++. +||+|++-. ...++ ..+|+..|+|++...
T Consensus 78 ~~l~~~l~~~--~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 78 IGLEAVLLEE--KPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred HHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 3444555555 899887743 33343 467788999998753
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=54.14 E-value=20 Score=32.82 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
|.=.-.-.|+++|+++||+|+++++.
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 33455678999999999999999964
No 102
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.48 E-value=44 Score=29.75 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC--cccccccccCCCCceEEEecCC
Q 041611 6 TRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKN--LPILSPLLDAHPAIKTLVLPFP 69 (249)
Q Consensus 6 ~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~--~~~~~~~~~~~~~i~~~~lp~~ 69 (249)
.++.|++++-..-.||--=|--=|.-||..|++|+++.=... .+.+-+ +++|+++.++.+
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~----hprI~ih~m~~l 71 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN----HPRIRIHGMPNL 71 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc----CCceEEEeCCCC
Confidence 567788888888889987788889999999999999874332 222222 489999988743
No 103
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=52.92 E-value=19 Score=26.73 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=30.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPIL 51 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~ 51 (249)
||++.-..+.+=+. ..++.++|.++|++|+++-|+...+.+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 56655555544444 999999999999999999987654443
No 104
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=52.41 E-value=27 Score=29.17 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
.-|+-.-+..|++.|.++|++|++++....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 568888999999999999999999987654
No 105
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=52.04 E-value=15 Score=30.40 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 21 HMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 21 Hi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
|+..|.++|..|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67889999999999999999998764
No 106
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=51.20 E-value=29 Score=23.41 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITIL 42 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~ 42 (249)
.-+|++.-....|..=+-++|+.|+++|+.|-..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567777777899999999999999999887654
No 107
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=51.19 E-value=29 Score=28.42 Aligned_cols=44 Identities=11% Similarity=-0.032 Sum_probs=38.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
.+.+|++.+.++-.|-.-..=++..|.++|++|+++...-..+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~ 130 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEK 130 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 45789999999999999999999999999999999987654433
No 108
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.04 E-value=69 Score=26.95 Aligned_cols=40 Identities=3% Similarity=-0.169 Sum_probs=30.5
Q ss_pred CCcEEEecCCccc--HHHHHhHcCCceEEEecchHHHHHHHH
Q 041611 113 PPVAILSDFFLGW--TLKLAHQLNIVRIAFFSSGWLLASVAD 152 (249)
Q Consensus 113 ~~~~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~a~~~~~~~ 152 (249)
++.||+++....- +..+|++.|++.+.+.+.+...+.+|.
T Consensus 217 ~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~m~ 258 (266)
T cd01018 217 GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENLL 258 (266)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHHHH
Confidence 8999999986643 458899999999988877655544443
No 109
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.93 E-value=39 Score=28.38 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=23.2
Q ss_pred CCcEE-EecCCcc-cHHHHHhHcCCceEEEecch
Q 041611 113 PPVAI-LSDFFLG-WTLKLAHQLNIVRIAFFSSG 144 (249)
Q Consensus 113 ~~~~v-I~D~~~~-~~~~vA~~lgiP~v~~~~~~ 144 (249)
-||++ |.|.-.- -|..-|+++|||+|.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 47765 6787653 45677999999999886553
No 110
>PRK06321 replicative DNA helicase; Provisional
Probab=47.78 E-value=80 Score=29.25 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=32.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhh-CCCcEEEEcCCCCccc
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSL-KDLDITILVTPKNLPI 50 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~-~G~~VT~~~t~~~~~~ 50 (249)
+++-.-|+.|=-.-.+++|+..+. .|..|-|++.+-....
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 556778999999999999999985 5899999987765443
No 111
>PLN02846 digalactosyldiacylglycerol synthase
Probab=47.65 E-value=29 Score=32.04 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCC----CChHHHHHHHHHHhhCC-CcEEEEcCCC
Q 041611 7 RTTHILIFPYPAQ----GHMLPLLDLTHQLSLKD-LDITILVTPK 46 (249)
Q Consensus 7 ~~~hvvl~p~p~~----GHi~P~l~La~~La~~G-~~VT~~~t~~ 46 (249)
.+.||.+++-... |=.+-.+.++..|+++| |+||++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 4588998875433 55355677778999999 7999998743
No 112
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=47.08 E-value=15 Score=33.42 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 23 LPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
.-.-.|+++|+++||+|+++++..
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 445679999999999999999643
No 113
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=46.94 E-value=45 Score=29.00 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=36.6
Q ss_pred CCCceEE-EEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcc
Q 041611 6 TRTTHIL-IFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP 49 (249)
Q Consensus 6 ~~~~hvv-l~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~ 49 (249)
..++|++ +--.|+.|--.=.-.|.++|.++||+|-++.......
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 3456666 7778999999999999999999999999998765443
No 114
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=46.50 E-value=19 Score=28.79 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCcEEEEcCCC
Q 041611 26 LDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~t~~ 46 (249)
..||+.+..+|++||+++.+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 568999999999999999874
No 115
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=46.46 E-value=3 Score=23.45 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=15.8
Q ss_pred EcCCCCCChHHHHHHHHHHhhCC
Q 041611 14 FPYPAQGHMLPLLDLTHQLSLKD 36 (249)
Q Consensus 14 ~p~p~~GHi~P~l~La~~La~~G 36 (249)
=.||+||-+||-+++---|-..|
T Consensus 16 PTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CcCCCCCCCCccccccccCCCCC
Confidence 35789999999777654444444
No 116
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=45.82 E-value=1.9e+02 Score=27.85 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCcEEEe-cC--CcccHHHHHhHcCC--ceEEEec
Q 041611 113 PPVAILS-DF--FLGWTLKLAHQLNI--VRIAFFS 142 (249)
Q Consensus 113 ~~~~vI~-D~--~~~~~~~vA~~lgi--P~v~~~~ 142 (249)
+||++|. |. |......-+++.|+ |.+.+.+
T Consensus 310 kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs 344 (608)
T PRK01021 310 NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC 344 (608)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 8998766 86 44445677888996 8776654
No 117
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.82 E-value=2.2e+02 Score=25.05 Aligned_cols=103 Identities=13% Similarity=0.049 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEcCCCC--cccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHh
Q 041611 21 HMLPLLDLTHQLSLKDLDITILVTPKN--LPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGK 98 (249)
Q Consensus 21 Hi~P~l~La~~La~~G~~VT~~~t~~~--~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 98 (249)
|+-=+-++-+.|..+||+|-+.+-..- .+.++. -++.+..+.- .+.. ...+.+.....+
T Consensus 12 hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk-------~g~~-------tl~~Kl~~~~eR 72 (346)
T COG1817 12 HVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL-----YGFPYKSIGK-------HGGV-------TLKEKLLESAER 72 (346)
T ss_pred hhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH-----hCCCeEeecc-------cCCc-------cHHHHHHHHHHH
Confidence 444577888999999999887765432 111111 1344443321 1100 111233333321
Q ss_pred cHHHHHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEecchHH
Q 041611 99 LYDPIIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWL 146 (249)
Q Consensus 99 l~~~l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~ 146 (249)
.-.+-+++.+. ++|+.+. -....+..+|--+|+|.++|.-..-+
T Consensus 73 -~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 73 -VYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred -HHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 22455566666 8999998 55677889999999999999865443
No 118
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=44.58 E-value=16 Score=30.51 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 23 LPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 446679999999999999999754
No 119
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=44.50 E-value=1.4 Score=40.72 Aligned_cols=10 Identities=40% Similarity=0.484 Sum_probs=6.3
Q ss_pred CCeEEeCcCC
Q 041611 236 DRVFGVGPLS 245 (249)
Q Consensus 236 ~~v~~VGPl~ 245 (249)
+++..||+++
T Consensus 246 p~v~~vGgl~ 255 (500)
T PF00201_consen 246 PNVVEVGGLH 255 (500)
T ss_dssp CTSTTGCGC-
T ss_pred hcccccCccc
Confidence 4567778775
No 120
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=43.97 E-value=53 Score=25.74 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=22.2
Q ss_pred CCcEEEecCCcccHHHHHhHcCCceEEEecchHH
Q 041611 113 PPVAILSDFFLGWTLKLAHQLNIVRIAFFSSGWL 146 (249)
Q Consensus 113 ~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~ 146 (249)
++++||-+.. +...|+++|+|++.+.++--+
T Consensus 125 G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 125 GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 7999998864 679999999999988885443
No 121
>PRK09165 replicative DNA helicase; Provisional
Probab=43.70 E-value=67 Score=29.92 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=32.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhC---------------CCcEEEEcCCCCcccc
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLK---------------DLDITILVTPKNLPIL 51 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~---------------G~~VT~~~t~~~~~~~ 51 (249)
+++..-|+.|=-.=++++|...+.+ |..|.|++.+-..+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5577789999999999999988753 7889999887665443
No 122
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=43.53 E-value=37 Score=24.03 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=18.6
Q ss_pred hhcCcEEeecchh---hhhHHHHHHHHHH
Q 041611 207 NTSSWGCVFNSFD---ALEGEYSDYLKRK 232 (249)
Q Consensus 207 ~~~a~~vl~NTf~---eLE~~~~~~l~~~ 232 (249)
..+||-+++|||- .=|.+.++.+++.
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l 62 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRKL 62 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 3579999999995 4455666666654
No 123
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.22 E-value=24 Score=31.86 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
||+.|++.|. +|...||+|+++...
T Consensus 49 Ghlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 49 GHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred hhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 9999999885 678899999998754
No 124
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=43.19 E-value=44 Score=25.60 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
++++|++.+...-||=.=.--+++.|++.|++|.......
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 6899999999988999999999999999999988766543
No 125
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.88 E-value=59 Score=28.74 Aligned_cols=44 Identities=9% Similarity=0.131 Sum_probs=31.3
Q ss_pred HHHhcHHHHHHHHHhCCCCCcEEEecCCccc------H----HHHHhHcCCceEEE
Q 041611 95 ALGKLYDPIIDWFRSQANPPVAILSDFFLGW------T----LKLAHQLNIVRIAF 140 (249)
Q Consensus 95 ~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~------~----~~vA~~lgiP~v~~ 140 (249)
..+...+.+.+++++. .+|++|+-..+.. | ..|.+++|||.+.-
T Consensus 64 n~eea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 64 NKEEALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3344556667777777 8999999986653 1 24567899999974
No 126
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=41.58 E-value=35 Score=22.63 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCC
Q 041611 24 PLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 24 P~l~La~~La~~G~~VT~~~t~~ 46 (249)
--+++|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 35789999999999999998654
No 127
>PRK07773 replicative DNA helicase; Validated
Probab=41.56 E-value=83 Score=31.67 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=33.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhC-CCcEEEEcCCCCccc
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLK-DLDITILVTPKNLPI 50 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~-G~~VT~~~t~~~~~~ 50 (249)
+++..-|+.|=-.=.+++|...+.+ |..|.|++.+...++
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 5677789999999999999999864 889999988766544
No 128
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=41.30 E-value=93 Score=27.54 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCcEEEe-cC--CcccHHHHHhHc--CCceEEEecc
Q 041611 101 DPIIDWFRSQANPPVAILS-DF--FLGWTLKLAHQL--NIVRIAFFSS 143 (249)
Q Consensus 101 ~~l~~ll~~~~~~~~~vI~-D~--~~~~~~~vA~~l--giP~v~~~~~ 143 (249)
..++++.+.. .+||++|. |+ |......-+++. |||.+.|.+-
T Consensus 65 ~~~~~~~~~~-~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~P 111 (347)
T PRK14089 65 KAIKEMVELA-KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILP 111 (347)
T ss_pred HHHHHHHHHh-cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc
Confidence 3344444433 38888765 86 444456667778 7998876543
No 129
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=40.55 E-value=32 Score=22.37 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCcEEEEcCC
Q 041611 26 LDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~t~ 45 (249)
+..|..|+++|++||++-..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788999999999999654
No 130
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=40.47 E-value=48 Score=26.74 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.6
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
+..|++.|.+.||+|+++.+..+.+-
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 66799999878899999998877544
No 131
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=39.60 E-value=1.1e+02 Score=23.67 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=28.1
Q ss_pred hcHHHHHHHHHhCCCCCcEEEecCCccc-H-HH-H--HhHc-CCceEEEecc
Q 041611 98 KLYDPIIDWFRSQANPPVAILSDFFLGW-T-LK-L--AHQL-NIVRIAFFSS 143 (249)
Q Consensus 98 ~l~~~l~~ll~~~~~~~~~vI~D~~~~~-~-~~-v--A~~l-giP~v~~~~~ 143 (249)
.+.+.+.+++++. +||+||+=..+.. + .. + ...+ ++|.+...|=
T Consensus 76 ~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 76 LFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 3456788888887 9999999876532 2 22 2 1224 5777766554
No 132
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=38.66 E-value=1.6e+02 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhh--CCCcEE---EEcCCCC
Q 041611 23 LPLLDLTHQLSL--KDLDIT---ILVTPKN 47 (249)
Q Consensus 23 ~P~l~La~~La~--~G~~VT---~~~t~~~ 47 (249)
.-.+.++++|.+ +|++|. ++.+..-
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~ 40 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRA 40 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHH
Confidence 446788999987 699999 8887643
No 133
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=38.44 E-value=25 Score=32.12 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
|==.-.-.|+++|+++||+|.++++..
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 333556789999999999999999744
No 134
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.63 E-value=60 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.4
Q ss_pred CCcEEEecCCcccHHHHHhHcCCceEEE
Q 041611 113 PPVAILSDFFLGWTLKLAHQLNIVRIAF 140 (249)
Q Consensus 113 ~~~~vI~D~~~~~~~~vA~~lgiP~v~~ 140 (249)
++|++|.+. +...+|+++|+|.+.+
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~ 394 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVI 394 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEE
Confidence 688888775 4566789999998765
No 135
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=37.44 E-value=67 Score=25.88 Aligned_cols=37 Identities=3% Similarity=0.091 Sum_probs=33.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEc
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
++.-|.++..++.|=....+.+|.+.+.+|.+|.++-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567889999999999999999999999999999874
No 136
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.14 E-value=1.1e+02 Score=24.34 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=46.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCcc-cccccccCCCCceEEEecCCCCCCCCCCCCccccCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLP-ILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGN 86 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~-~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~ 86 (249)
.++-+-..+.|=++-...|+++|.++ |++|.+-++..... ...+... +.+....+|. ++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~----D~------------ 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPL----DF------------ 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE-------SS------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCc----cC------------
Confidence 56667778889999999999999986 78877766533322 2222111 1233333332 11
Q ss_pred CCcHHHHHHHHhcHHHHHHHHHhCCCCCcEEEecCCcccH--HHHHhHcCCceEEEec
Q 041611 87 RGNYPIMTALGKLYDPIIDWFRSQANPPVAILSDFFLGWT--LKLAHQLNIVRIAFFS 142 (249)
Q Consensus 87 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~~~~ 142 (249)
...++++++.. +|+++|.=----|- ...|++.|||.+....
T Consensus 84 -------------~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 -------------PWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------------HHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------------HHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12344555656 67755442223344 5778899999998754
No 137
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=35.46 E-value=47 Score=26.89 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCCChHH-HHHHHHHHhhCCCcEEEEcCCCCc
Q 041611 9 THILIFPYPAQGHMLP-LLDLTHQLSLKDLDITILVTPKNL 48 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P-~l~La~~La~~G~~VT~~~t~~~~ 48 (249)
.+|++.-. |.+...- ...|+++|.++|++|+++.|+...
T Consensus 6 k~IllgVT-Gsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 6 KRIGFGLT-GSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CEEEEEEc-CHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 45554433 4445555 689999999999999999988654
No 138
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.45 E-value=79 Score=26.55 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHHhhCCCcEEEEc
Q 041611 26 LDLTHQLSLKDLDITILV 43 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~ 43 (249)
.+|++.|.++|+ |++-.
T Consensus 13 r~la~~L~~~g~-v~~sv 29 (249)
T PF02571_consen 13 RKLAERLAEAGY-VIVSV 29 (249)
T ss_pred HHHHHHHHhcCC-EEEEE
Confidence 578999999998 55433
No 139
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=35.01 E-value=27 Score=26.47 Aligned_cols=19 Identities=42% Similarity=0.705 Sum_probs=16.4
Q ss_pred CCCCCChHHHHHHHHHHhh
Q 041611 16 YPAQGHMLPLLDLTHQLSL 34 (249)
Q Consensus 16 ~p~~GHi~P~l~La~~La~ 34 (249)
.|-+|-.||+++|+-.|+=
T Consensus 56 ~pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 56 SPEQGETNPFLHLSMHLSI 74 (137)
T ss_pred CcccCccchhHHHHHHHHH
Confidence 3678999999999999874
No 140
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=34.77 E-value=91 Score=27.21 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=56.1
Q ss_pred cCCCCCChHHHHHHHHHHhhC-CCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHH
Q 041611 15 PYPAQGHMLPLLDLTHQLSLK-DLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIM 93 (249)
Q Consensus 15 p~p~~GHi~P~l~La~~La~~-G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~ 93 (249)
-.....|+.=+..+.++|.++ ++++.++.|............. -++. ..+.. .+.. ... . ..
T Consensus 6 ~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-~~i~-~~~~~----~~~~---~~~----~----~~ 68 (365)
T TIGR00236 6 VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-FHLP-PDYDL----NIMS---PGQ----T----LG 68 (365)
T ss_pred EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-cCCC-CCeee----ecCC---CCC----C----HH
Confidence 345567778888888999876 6777777665432222111100 0111 00000 0100 000 0 11
Q ss_pred HHHHhcHHHHHHHHHhCCCCCcEEEe--cCCccc-HHHHHhHcCCceEEE
Q 041611 94 TALGKLYDPIIDWFRSQANPPVAILS--DFFLGW-TLKLAHQLNIVRIAF 140 (249)
Q Consensus 94 ~~~~~l~~~l~~ll~~~~~~~~~vI~--D~~~~~-~~~vA~~lgiP~v~~ 140 (249)
..+..+...+.+++++. +||+|++ |..... +..+|.++|||++..
T Consensus 69 ~~~~~~~~~l~~~l~~~--~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 69 EITSNMLEGLEELLLEE--KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 11222335566677777 8999877 444434 457788899999865
No 141
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.71 E-value=37 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=26.4
Q ss_pred EEEEcCCCC-CChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 11 ILIFPYPAQ-GHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 11 vvl~p~p~~-GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
+|++-.|-. --+.-.+-++.+|-.+|++||+..++..
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhh
Confidence 334444433 3455578899999999999999988743
No 142
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.34 E-value=93 Score=28.34 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=31.3
Q ss_pred HHhcHHHHHHHHHhCCCCCcEEEecCCccc------H----HHHHhHcCCceEEEe
Q 041611 96 LGKLYDPIIDWFRSQANPPVAILSDFFLGW------T----LKLAHQLNIVRIAFF 141 (249)
Q Consensus 96 ~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~------~----~~vA~~lgiP~v~~~ 141 (249)
.+...+.+.+++++. ++|++|+-..+.. + ..|.+++|||.+.--
T Consensus 61 ~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 444556677777777 8999999886653 1 245667999999744
No 143
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.21 E-value=60 Score=27.83 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=41.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCcccccccccCCCCce-EEEec
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLPILSPLLDAHPAIK-TLVLP 67 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~~~~~~~~~~~~i~-~~~lp 67 (249)
+|+++-..+.|-+.-...+.+.|.++ +.+||+++.+.+...++. .+.++ ++.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~----~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL----HPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc----CCCccEEEEec
Confidence 47888889999999999999999986 999999998777555443 25564 44443
No 144
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.21 E-value=95 Score=28.30 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHhcHHHHHHHHHhCCCCCcEEEecCCccc------H----HHHHhHcCCceEEEe
Q 041611 96 LGKLYDPIIDWFRSQANPPVAILSDFFLGW------T----LKLAHQLNIVRIAFF 141 (249)
Q Consensus 96 ~~~l~~~l~~ll~~~~~~~~~vI~D~~~~~------~----~~vA~~lgiP~v~~~ 141 (249)
.+...+.+.+++++. ++|++|+-..+.. + ..|.+++|||.+.--
T Consensus 61 ~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 344456677777777 8999999886653 1 245667999999744
No 145
>PRK09620 hypothetical protein; Provisional
Probab=33.20 E-value=43 Score=27.70 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 17 PAQGHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 17 p~~GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
.+.|.+- .+||++|..+|++||++...
T Consensus 26 ~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 26 MAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 3445443 67999999999999999754
No 146
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=33.13 E-value=28 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCcEE-EecCCc-ccHHHHHhHcCCceEEEecchHH
Q 041611 113 PPVAI-LSDFFL-GWTLKLAHQLNIVRIAFFSSGWL 146 (249)
Q Consensus 113 ~~~~v-I~D~~~-~~~~~vA~~lgiP~v~~~~~~a~ 146 (249)
.||+| |.|.-. ..+..-|.++|||.|.+.-+.+-
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 57765 557754 45668899999999998765543
No 147
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=32.83 E-value=2.9e+02 Score=25.39 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=24.4
Q ss_pred EEEcCCCCCChHHHHHHHHHHhhCCCcEEE
Q 041611 12 LIFPYPAQGHMLPLLDLTHQLSLKDLDITI 41 (249)
Q Consensus 12 vl~p~p~~GHi~P~l~La~~La~~G~~VT~ 41 (249)
+.-|--+.|-..-.+.|.++|.+||++|--
T Consensus 5 IAg~~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 5 IAGTSSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 345566789999999999999999987643
No 148
>PTZ00445 p36-lilke protein; Provisional
Probab=32.57 E-value=43 Score=27.51 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.4
Q ss_pred CChHH-HHHHHHHHhhCCCcEEEEcCC
Q 041611 20 GHMLP-LLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 20 GHi~P-~l~La~~La~~G~~VT~~~t~ 45 (249)
+|..| +..+.++|.+.|..|+++|-.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 57777 888999999999999999843
No 149
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=32.35 E-value=40 Score=30.20 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 20 GHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 20 GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
||+.|++.+ ++|.+.||++.++...
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 999997776 6888999999988653
No 150
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.26 E-value=79 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=26.4
Q ss_pred CCcEEEecCCcccHHHHHhHcCCceEEEecc
Q 041611 113 PPVAILSDFFLGWTLKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 113 ~~~~vI~D~~~~~~~~vA~~lgiP~v~~~~~ 143 (249)
.+.+||+|----.+.+-|++.|||.+++..-
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k 59 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRK 59 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEeccc
Confidence 6889999986667889999999999887654
No 151
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.17 E-value=99 Score=21.50 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCcEE--EecCCcc---cH-HHHHhHcCCceEEEecchHHHHH
Q 041611 113 PPVAI--LSDFFLG---WT-LKLAHQLNIVRIAFFSSGWLLAS 149 (249)
Q Consensus 113 ~~~~v--I~D~~~~---~~-~~vA~~lgiP~v~~~~~~a~~~~ 149 (249)
+.|+| ++|.... |. ...|++.|+|.+.....+...+.
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~ 90 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLE 90 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 55766 5577643 43 48899999999999877766543
No 152
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.12 E-value=86 Score=22.42 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=31.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
+++....++..|-.-..-++..|.++|++|.++....
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCC
Confidence 3677788889999999999999999999999986543
No 153
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=32.10 E-value=91 Score=23.09 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCc--ccHHHHHhHcCCceEEEecch
Q 041611 100 YDPIIDWFRSQANPPVAILSDFFL--GWTLKLAHQLNIVRIAFFSSG 144 (249)
Q Consensus 100 ~~~l~~ll~~~~~~~~~vI~D~~~--~~~~~vA~~lgiP~v~~~~~~ 144 (249)
...++++++.. .|.+||++.+. .+..++|++.|+|.....-.+
T Consensus 71 ~~~l~~l~~~~--~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 71 KERLEKLFSYN--PPCIIVTRGLEPPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp CCHHHHHCTTT---S-EEEETTT---HHHHHHHHHCT--EEEESS-H
T ss_pred HHHHHHHhCCC--CCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcH
Confidence 35566666644 78888998875 456799999999998765443
No 154
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=31.98 E-value=79 Score=21.20 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=21.4
Q ss_pred CCcEEEecCCc--ccHHHHHhHcCCceEEEec
Q 041611 113 PPVAILSDFFL--GWTLKLAHQLNIVRIAFFS 142 (249)
Q Consensus 113 ~~~~vI~D~~~--~~~~~vA~~lgiP~v~~~~ 142 (249)
++..||++.-- +-+.-+|+++|||.++-..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 67778887643 4557889999999997543
No 155
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=31.93 E-value=71 Score=25.40 Aligned_cols=45 Identities=20% Similarity=0.111 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCcccH--HHHHhHcCCceEEEecchH
Q 041611 100 YDPIIDWFRSQANPPVAILSDFFLGWT--LKLAHQLNIVRIAFFSSGW 145 (249)
Q Consensus 100 ~~~l~~ll~~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~~~~~~a 145 (249)
.+.++++++... .+.-+|.|.|++.+ ..+|.++|=.++.+=...-
T Consensus 178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 356677776553 56778999999765 5778899988887765544
No 156
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=31.68 E-value=42 Score=26.68 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCccccc
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILS 52 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~ 52 (249)
.+|++.-..+.|=+ -..++.++|.++|++|.++.|+...+.+.
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 35665555554444 47899999999999999999886554443
No 157
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=31.34 E-value=37 Score=28.53 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=36.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccc
Q 041611 8 TTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSP 53 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~ 53 (249)
..-+++.--||.|=.-=...+|.+|..+|++|+|++++.....++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 3467888888888877788999999988999999998776555443
No 158
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=31.08 E-value=56 Score=23.23 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCCCc
Q 041611 23 LPLLDLTHQLSLKDLDITILVTPKNL 48 (249)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~~t~~~~ 48 (249)
.|.+.+++.|.++|.+|.+.=+.-..
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccCh
Confidence 68999999999999999888765443
No 159
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.06 E-value=1.3e+02 Score=21.80 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
||++.--++.|=-.....|++.|+++|.+|-++.+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4677788899999999999999999999999988765
No 160
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.02 E-value=82 Score=29.49 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEEe
Q 041611 103 IIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAFF 141 (249)
Q Consensus 103 l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~~ 141 (249)
+++.+++. ++|+|+.+. |...+|+++|||.+...
T Consensus 366 i~~~I~~~--~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 366 VGDMIARV--EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHhc--CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 34445554 799999875 56778999999997644
No 161
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=29.99 E-value=2e+02 Score=20.23 Aligned_cols=53 Identities=8% Similarity=-0.179 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCCCcEEEecCCcc----cH---HHHHhHcCCceEEEecchHHHHHHHHhhh
Q 041611 101 DPIIDWFRSQANPPVAILSDFFLG----WT---LKLAHQLNIVRIAFFSSGWLLASVADYCW 155 (249)
Q Consensus 101 ~~l~~ll~~~~~~~~~vI~D~~~~----~~---~~vA~~lgiP~v~~~~~~a~~~~~~~~~~ 155 (249)
..++++++.. .+|++..|.... .+ ...|+++|+++..-...+...++...|+-
T Consensus 8 ~~~~~li~~~--a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hla 67 (111)
T PF13378_consen 8 HDFRRLIEAG--AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHLA 67 (111)
T ss_dssp HHHHHHHHTT--SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHHH
Confidence 4567777765 789999995432 22 47789999998887755555556665554
No 162
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.89 E-value=59 Score=24.02 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=16.8
Q ss_pred HHHHHHHHhhCCCcEEEEcC
Q 041611 25 LLDLTHQLSLKDLDITILVT 44 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t 44 (249)
++..|++|+++|++|+..-.
T Consensus 25 ~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 25 FLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred HHHHHHHHHHcCCcEEEEec
Confidence 67899999999998877644
No 163
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=29.29 E-value=50 Score=27.26 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=21.8
Q ss_pred EEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 13 IFPYPAQGHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 13 l~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
++.-.+.|-+ -.+||++|+++|++||++...
T Consensus 19 ~itN~SSG~i--G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 19 GITNHSTGQL--GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred eecCccchHH--HHHHHHHHHhCCCEEEEEECc
Confidence 4444454433 257889999999999998743
No 164
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=28.93 E-value=38 Score=22.48 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=12.4
Q ss_pred HHHHHHHhhCCCcEEEEc
Q 041611 26 LDLTHQLSLKDLDITILV 43 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~ 43 (249)
-+|...|..+|+.||=.|
T Consensus 23 ~eL~~~L~~~Gi~vTQaT 40 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQAT 40 (70)
T ss_dssp HHHHHHHHHTT-T--HHH
T ss_pred HHHHHHHHHcCCCcchhH
Confidence 478999999999987655
No 165
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=28.84 E-value=2.8e+02 Score=21.54 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITIL 42 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~ 42 (249)
-|.++..++.|=....+.+|-+.+.+|.+|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 466888899999999999999999999999994
No 166
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=28.68 E-value=40 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCcc
Q 041611 24 PLLDLTHQLSLKDLDITILVTPKNLP 49 (249)
Q Consensus 24 P~l~La~~La~~G~~VT~~~t~~~~~ 49 (249)
-.+-|+.+|..+|++||+..++....
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~k 40 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALK 40 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHh
Confidence 36789999999999999999875443
No 167
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=28.46 E-value=1.3e+02 Score=22.97 Aligned_cols=62 Identities=6% Similarity=0.080 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCcccccccccCCCCceEEEecC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLPILSPLLDAHPAIKTLVLPF 68 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~ 68 (249)
...+|++|...+.+|+.=.+.+.+.+... .+.+.+..-.-....++.......++++..+++
T Consensus 58 n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~ 121 (142)
T PF07801_consen 58 NSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNF 121 (142)
T ss_pred cCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCC
Confidence 45789999999999999999999999986 477777765544444333211125788887765
No 168
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.38 E-value=1e+02 Score=28.85 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEE
Q 041611 103 IIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAF 140 (249)
Q Consensus 103 l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~ 140 (249)
+++.+++. ++|+||.+. +...+|+++|||.+..
T Consensus 356 i~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 356 VADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred HHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 33344444 789998875 5678899999999865
No 169
>PRK13604 luxD acyl transferase; Provisional
Probab=28.32 E-value=1.4e+02 Score=25.93 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=25.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
..+++.....++-.-+.++|+.|+++|+.|.-+=
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 4555555555666669999999999998876653
No 170
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=27.92 E-value=99 Score=27.22 Aligned_cols=44 Identities=20% Similarity=0.073 Sum_probs=27.8
Q ss_pred hcHHHHHHHHHhCCCCCcEEEe--cCCcccH-HHHHhHcCCceEEEecc
Q 041611 98 KLYDPIIDWFRSQANPPVAILS--DFFLGWT-LKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 98 ~l~~~l~~ll~~~~~~~~~vI~--D~~~~~~-~~vA~~lgiP~v~~~~~ 143 (249)
.+-..+.+++.+. +||+||. |-+-.-+ .-+|..++||.+.....
T Consensus 54 ~~~~~~~~~~~~~--~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 54 LAIIELADVLERE--KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHHH--T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHHHhc--CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 3445566666666 8998876 6665444 56788999998877665
No 171
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.90 E-value=1e+02 Score=20.76 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=26.1
Q ss_pred eEEEEcCCCC--CChHHHHHHHHHHhhCCCcEEEEc
Q 041611 10 HILIFPYPAQ--GHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 10 hvvl~p~p~~--GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
+|+++|.... .+..-.++++..|.+.|++|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 6788887653 456678888999988999998754
No 172
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=27.64 E-value=67 Score=25.76 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=27.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNL 48 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~ 48 (249)
+|++.-..+.|=+.-.+.+.++|.+.|++|+++.|+...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 344444444444444469999999999999999887653
No 173
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.62 E-value=1.7e+02 Score=21.04 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=21.1
Q ss_pred CCCCCChHHHHHHHHHHhhCCCcEEEEc
Q 041611 16 YPAQGHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 16 ~p~~GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
....|.-.-+..+++.|+++|+.|..+.
T Consensus 6 HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 6 HGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp CTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3334556678999999999998877773
No 174
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=27.45 E-value=1.4e+02 Score=25.21 Aligned_cols=39 Identities=21% Similarity=-0.051 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCCcEEEecCCcc-----c-HHHHHhHcCCceEEEecc
Q 041611 103 IIDWFRSQANPPVAILSDFFLG-----W-TLKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 103 l~~ll~~~~~~~~~vI~D~~~~-----~-~~~vA~~lgiP~v~~~~~ 143 (249)
+.+.+++. .+|+|++-.-.. - ...+|+.+|+|++.+.+.
T Consensus 104 La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 33444444 699999854332 2 358999999999988765
No 175
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=27.33 E-value=1.1e+02 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 21 HMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 21 Hi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
--.-+.++++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 34568899999999999999998653
No 176
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=27.29 E-value=1.2e+02 Score=25.17 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=24.1
Q ss_pred HHHHhCCCCCcEEEecCCccc--HHHHHhHcCCceEEEecc
Q 041611 105 DWFRSQANPPVAILSDFFLGW--TLKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 105 ~ll~~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~~~~~ 143 (249)
+.+++. ++.||+++....- +..+|++.|++.+.+.+.
T Consensus 193 ~~ik~~--~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 193 KLIKEN--KVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHT--T-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHhhhc--CCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 334444 7889998876644 357888999998877665
No 177
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=27.10 E-value=2.6e+02 Score=24.31 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCcc--cHHHHHhHcCCceEEEecchHHH
Q 041611 100 YDPIIDWFRSQANPPVAILSDFFLG--WTLKLAHQLNIVRIAFFSSGWLL 147 (249)
Q Consensus 100 ~~~l~~ll~~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~~~~~~a~~ 147 (249)
...++++++.. .|.+||++.+.. +...+|++.++|.+...-.+...
T Consensus 72 ~~~~~~~~~~~--~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~~ 119 (304)
T TIGR00679 72 KQIIHNLLTLN--PPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTEL 119 (304)
T ss_pred HHHHHHHhCCC--CCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHHH
Confidence 45666666654 677888887654 55799999999999876655443
No 178
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=27.06 E-value=88 Score=28.95 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=23.4
Q ss_pred HHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEE
Q 041611 104 IDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIA 139 (249)
Q Consensus 104 ~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~ 139 (249)
.+.+++. ++|++|.. .+...+|+++|||.+-
T Consensus 386 ~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 386 YKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 3334444 79999986 6678999999999983
No 179
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=27.02 E-value=99 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 19 QGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 19 ~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
-|--.-...|++.|+++||.|++++...
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 3556778899999999999999998654
No 180
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=26.79 E-value=1.8e+02 Score=23.30 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEec
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLP 67 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp 67 (249)
+..||+.|.+.|+++ +.|....+.++. .++.+..+.
T Consensus 13 l~~lAk~L~~lGf~I--~AT~GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 13 LVEFAKELVELGVEI--LSTGGTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH-----cCCeEEEhh
Confidence 678999999999887 566666655554 356555443
No 181
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=26.70 E-value=1.2e+02 Score=23.01 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.3
Q ss_pred CCCCCChHHHHHHHHHHhhCCCcEEEE
Q 041611 16 YPAQGHMLPLLDLTHQLSLKDLDITIL 42 (249)
Q Consensus 16 ~p~~GHi~P~l~La~~La~~G~~VT~~ 42 (249)
-++.|--.-.+.|++.|+++|.+|-++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 356688888999999999999999886
No 182
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.56 E-value=2.7e+02 Score=22.11 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=40.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEec
Q 041611 8 TTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLP 67 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp 67 (249)
..+|.+--.|+.|--.-.+.++..|..+|++|-=+-|+...+-=+ .-+++++++.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGk-----R~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGK-----RIGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCe-----EeeeEEEEcc
Confidence 457888888999999999999999999999987666654422100 1357777664
No 183
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=26.48 E-value=1.5e+02 Score=26.53 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=17.0
Q ss_pred CCcEEE-ecC--CcccHHHHHhHcCCc
Q 041611 113 PPVAIL-SDF--FLGWTLKLAHQLNIV 136 (249)
Q Consensus 113 ~~~~vI-~D~--~~~~~~~vA~~lgiP 136 (249)
+||++| .|+ |.-....-+++.|++
T Consensus 82 ~pd~vIlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 82 KPDVVILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred CCCEEEEeCCCCccHHHHHHHHHhCCC
Confidence 888765 486 444455677899998
No 184
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=26.48 E-value=1.2e+02 Score=28.51 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=23.7
Q ss_pred HHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEEE
Q 041611 103 IIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIAF 140 (249)
Q Consensus 103 l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~~ 140 (249)
+++.+++. +||+||.+. +...+|+++|||++.+
T Consensus 354 l~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 354 VEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 33344444 789988765 4677999999998755
No 185
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=25.91 E-value=57 Score=22.64 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHhcHHHHH
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYDPII 104 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 104 (249)
++++|++|++.|++ ++.|....+.++. .+++...+-.. .+.++ .... . ..+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~-----~Gi~~~~v~~~--~~~~~---~~~g----~------------~~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE-----HGIEVTEVVNK--IGEGE---SPDG----R------------VQIM 53 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH-----TT--EEECCEE--HSTG----GGTH----C------------HHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH-----cCCCceeeeee--cccCc---cCCc----h------------hHHH
Confidence 57899999999955 6777766655554 35654333110 00010 0000 0 0455
Q ss_pred HHHHhCCCCCcEEEecCCcc---------cHHHHHhHcCCceE
Q 041611 105 DWFRSQANPPVAILSDFFLG---------WTLKLAHQLNIVRI 138 (249)
Q Consensus 105 ~ll~~~~~~~~~vI~D~~~~---------~~~~vA~~lgiP~v 138 (249)
+++++. ++|.||.-.--. .....|.+.|||.+
T Consensus 54 ~~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 54 DLIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 566665 889888754321 11356888888876
No 186
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=25.87 E-value=1.2e+02 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=27.5
Q ss_pred HhhhcCcEEeecchhhhhHHHHHHHHHHhC---CCCeEEeCc
Q 041611 205 LANTSSWGCVFNSFDALEGEYSDYLKRKMG---HDRVFGVGP 243 (249)
Q Consensus 205 ~~~~~a~~vl~NTf~eLE~~~~~~l~~~~~---~~~v~~VGP 243 (249)
..+.+.|||++-|-..-+. +++++++... ..++++||+
T Consensus 51 ~~l~~~d~iifTS~naV~~-~~~~l~~~~~~~~~~~~~aVG~ 91 (255)
T PRK05752 51 LELDRYCAVIVVSKPAARL-GLELLDRYWPQPPQQPWFSVGA 91 (255)
T ss_pred hcCCCCCEEEEECHHHHHH-HHHHHHhhCCCCcCCEEEEECH
Confidence 4567789999999888776 5666654321 157999997
No 187
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.86 E-value=1.2e+02 Score=26.51 Aligned_cols=46 Identities=30% Similarity=0.418 Sum_probs=38.9
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCccccc
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLPILS 52 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~~~~ 52 (249)
...+|+++-.-+.|.+.=...+.+.|.++ +.+||+++.+.+...++
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 51 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS 51 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc
Confidence 35679999999999999999999999985 89999999887665444
No 188
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=25.81 E-value=1.4e+02 Score=24.34 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=33.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLP 49 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~ 49 (249)
-+++.--|+.|--.-..+++...+.+|..|.++++....+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 3556778899999999999988888999999999976543
No 189
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.71 E-value=1.3e+02 Score=21.55 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCC-cEEEEcC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDL-DITILVT 44 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~-~VT~~~t 44 (249)
.++.++.+..-...|.....++++.+.+++. ++.++..
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 4567887877777888888888888887766 6655443
No 190
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.45 E-value=1.1e+02 Score=27.72 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHHHHHhCCCCCcEEEecCCcccHHHHHhHcCCceEE
Q 041611 103 IIDWFRSQANPPVAILSDFFLGWTLKLAHQLNIVRIA 139 (249)
Q Consensus 103 l~~ll~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~ 139 (249)
+++++++. ++|++|.+. +...+|+++|||.+-
T Consensus 364 ~~~~l~~~--~~dliiG~s---~~~~~a~~~~ip~~~ 395 (429)
T cd03466 364 IESYAKEL--KIDVLIGNS---YGRRIAEKLGIPLIR 395 (429)
T ss_pred HHHHHHhc--CCCEEEECc---hhHHHHHHcCCCEEE
Confidence 34444444 677777764 356778888888763
No 191
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=25.41 E-value=1.3e+02 Score=26.83 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=28.5
Q ss_pred CCceEEEEcC-CCCCChHHHHHHHHHHhhCC---CcEEEEcC
Q 041611 7 RTTHILIFPY-PAQGHMLPLLDLTHQLSLKD---LDITILVT 44 (249)
Q Consensus 7 ~~~hvvl~p~-p~~GHi~P~l~La~~La~~G---~~VT~~~t 44 (249)
+.++|++++. -|.||.-..-.|.+.|.++| .+|.++-.
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~ 45 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDL 45 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeeh
Confidence 4467887765 47799999999999999876 34665543
No 192
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=25.39 E-value=1.7e+02 Score=27.41 Aligned_cols=36 Identities=11% Similarity=0.294 Sum_probs=25.5
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEec
Q 041611 25 LLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLP 67 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp 67 (249)
+..|++.|.+.|++| +.|....+.++. .++.+..+.
T Consensus 13 iv~lAk~L~~lGfeI--iATgGTak~L~e-----~GI~v~~Vs 48 (511)
T TIGR00355 13 IVEFAQGLVERGVEL--LSTGGTAKLLAE-----AGVPVTEVS 48 (511)
T ss_pred HHHHHHHHHHCCCEE--EEechHHHHHHH-----CCCeEEEee
Confidence 678999999999887 566666665554 356665543
No 193
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.20 E-value=1.3e+02 Score=26.48 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCCcEEEecCCcccHHHH--HhHcCCceEEEec
Q 041611 101 DPIIDWFRSQANPPVAILSDFFLGWTLKL--AHQLNIVRIAFFS 142 (249)
Q Consensus 101 ~~l~~ll~~~~~~~~~vI~D~~~~~~~~v--A~~lgiP~v~~~~ 142 (249)
..+.+++++. +||+||++.-......+ +...++|.+...+
T Consensus 94 ~~l~~~l~~~--~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 94 KRLKLLLQAE--KPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred HHHHHHHHHh--CcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 4566777776 89999997543222222 3346789875443
No 194
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.09 E-value=70 Score=24.93 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCCh-HHHHHHHHHHhhCCCcEEEEcC
Q 041611 7 RTTHILIFPYPAQGHM-LPLLDLTHQLSLKDLDITILVT 44 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi-~P~l~La~~La~~G~~VT~~~t 44 (249)
...+|+++.-++ +- -=-+-+||+|+++|++|+++..
T Consensus 24 ~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 346777776654 22 1257789999999999999543
No 195
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.81 E-value=1.4e+02 Score=27.29 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 6 TRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 6 ~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
.+.++|+++.-|+- |----+-.||+|+..|+.++++...
T Consensus 264 ~~~P~V~Ilcgpgn-nggdg~v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 264 HQWPLVAILCGPGN-NGGDGLVCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCCceEEEEeCCCC-ccchhHHHHHHHHHcCceeEEEeec
Confidence 34678999998874 1112222999999999998887654
No 196
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.69 E-value=1.7e+02 Score=24.56 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHhhCCCcEEEEcCC
Q 041611 26 LDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~t~ 45 (249)
.+||+.|..+|+.|++-++.
T Consensus 15 r~la~~L~~~g~~v~~Svat 34 (248)
T PRK08057 15 RALARALAAAGVDIVLSLAG 34 (248)
T ss_pred HHHHHHHHhCCCeEEEEEcc
Confidence 47899999899887765443
No 197
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.58 E-value=68 Score=27.29 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVT 44 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t 44 (249)
.-++++-.+.|= -.++|+.||++|+++.++.=
T Consensus 7 ~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 7 KTALITGASSGI---GAELAKQLARRGYNLILVAR 38 (265)
T ss_pred cEEEEECCCchH---HHHHHHHHHHCCCEEEEEeC
Confidence 345566666552 46899999999999999873
No 198
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.38 E-value=1.7e+02 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCC
Q 041611 25 LLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~ 47 (249)
-..|+++|+..+..+++.++...
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~ 36 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGY 36 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccc
Confidence 46789999998877777665444
No 199
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.28 E-value=75 Score=29.47 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCCChHHH------------HHHHHHHhhCCCcEEEEcCCC
Q 041611 8 TTHILIFPYPAQGHMLPL------------LDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 8 ~~hvvl~p~p~~GHi~P~------------l~La~~La~~G~~VT~~~t~~ 46 (249)
..+|++-..|..--+.|. ..||+++..+|++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 457777777777777665 468899999999999998764
No 200
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=24.09 E-value=2e+02 Score=27.01 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEec
Q 041611 24 PLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLP 67 (249)
Q Consensus 24 P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp 67 (249)
=+..||+.|.+.|++| +.|....+.++. .++.+..+.
T Consensus 16 ~iv~lAk~L~~lGfeI--~AT~GTak~L~e-----~GI~v~~V~ 52 (513)
T PRK00881 16 GIVEFAKALVELGVEI--LSTGGTAKLLAE-----AGIPVTEVS 52 (513)
T ss_pred cHHHHHHHHHHCCCEE--EEcchHHHHHHH-----CCCeeEEee
Confidence 3789999999999887 466666655554 356655443
No 201
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.05 E-value=1e+02 Score=26.83 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=37.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCcccccc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLPILSP 53 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~~~~~ 53 (249)
+|+++-.-+.|.+.=...+.+.|.++ +.+||+++.+.+.+.++.
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR 47 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc
Confidence 68999999999999999999999984 899999998766554443
No 202
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=24.02 E-value=1.2e+02 Score=27.59 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhCCCcEEEE
Q 041611 24 PLLDLTHQLSLKDLDITIL 42 (249)
Q Consensus 24 P~l~La~~La~~G~~VT~~ 42 (249)
-+-+|-+.|.+-|.+++++
T Consensus 182 d~~elk~lL~~~Gl~~~~l 200 (432)
T TIGR01285 182 DIEELRRMVEAFGLKPIIL 200 (432)
T ss_pred CHHHHHHHHHHcCCceEEe
Confidence 4567777777788888765
No 203
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=23.96 E-value=67 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHHHHhhCCCcEEEEcCCC
Q 041611 27 DLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 27 ~La~~La~~G~~VT~~~t~~ 46 (249)
-+|.+|++.|++|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999765
No 204
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.72 E-value=1.4e+02 Score=21.41 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCCc
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKNL 48 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~~ 48 (249)
..|+-..+++.++.+.++|..|..+|.....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 6688999999999999999999888866553
No 205
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=23.63 E-value=71 Score=26.16 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
+.|++- -.||++|+..||+|++.+....
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 344443 4688999999999999987655
No 206
>PLN02891 IMP cyclohydrolase
Probab=23.61 E-value=1.8e+02 Score=27.40 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCC
Q 041611 24 PLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPP 76 (249)
Q Consensus 24 P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~ 76 (249)
=+.+||+.|.++|++ +++|....+.++. .+|.+..+... -|+|+
T Consensus 34 gi~~fAk~L~~~gve--IiSTgGTak~L~e-----~Gi~v~~Vsd~--TgfPE 77 (547)
T PLN02891 34 DLALLANGLQELGYT--IVSTGGTASALEA-----AGVSVTKVEEL--TNFPE 77 (547)
T ss_pred CHHHHHHHHHHCCCE--EEEcchHHHHHHH-----cCCceeeHHhc--cCCch
Confidence 368999999999855 6788777666654 36766665422 25554
No 207
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=23.38 E-value=1.3e+02 Score=25.03 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccc
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPIL 51 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~ 51 (249)
.-+++.=.|+.|..+=.+|++...+++|..|-++++....+.+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 3466778899999999999999999999999999998765543
No 208
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=23.23 E-value=1.4e+02 Score=26.98 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=19.5
Q ss_pred CCcEEEecCCcccHHHHHhHcCCceEEE
Q 041611 113 PPVAILSDFFLGWTLKLAHQLNIVRIAF 140 (249)
Q Consensus 113 ~~~~vI~D~~~~~~~~vA~~lgiP~v~~ 140 (249)
++|+||.+.. ...+|+++|+|.+.+
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 7899988763 578888899998743
No 209
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.20 E-value=1.9e+02 Score=22.18 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=32.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
+++.-.|+.|=-.....|++.++.+|.+|.++.....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4567778999999999999999999999999987754
No 210
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.09 E-value=1.5e+02 Score=25.13 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=33.4
Q ss_pred ce-EEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 9 TH-ILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 9 ~h-vvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
++ ++++..+|.|=-.-...||..|+.+|.+|.++....+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 44 4477778999999999999999999999999998754
No 211
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=23.08 E-value=78 Score=27.38 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=24.4
Q ss_pred CCCCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCC
Q 041611 4 SNTRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 4 ~~~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~ 45 (249)
+.++++||. -+.||+.++.-|. .|++||+.-..
T Consensus 42 aptGrpHia--------y~vpm~kiadflk-AGC~VtIl~AD 74 (360)
T KOG2144|consen 42 APTGRPHIA--------YFVPMMKIADFLK-AGCEVTILFAD 74 (360)
T ss_pred CCCCCccee--------eeeehhHHHHHHh-cCCeEEEEehH
Confidence 335677764 2678999997654 79999998765
No 212
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=23.06 E-value=1.7e+02 Score=25.86 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=25.0
Q ss_pred EEEcCCCCCChHHHHHHHHHHhhC-C--CcEEEEcCC
Q 041611 12 LIFPYPAQGHMLPLLDLTHQLSLK-D--LDITILVTP 45 (249)
Q Consensus 12 vl~p~p~~GHi~P~l~La~~La~~-G--~~VT~~~t~ 45 (249)
++-..-|.||.-..-.|.+.|.++ | .+|+++...
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~~ 39 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDLW 39 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEehh
Confidence 344557889999999999999864 4 456666443
No 213
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=23.04 E-value=1.6e+02 Score=24.54 Aligned_cols=28 Identities=7% Similarity=-0.065 Sum_probs=21.6
Q ss_pred CCcEEEe--cCCcccHHHHHhHcCCceEEE
Q 041611 113 PPVAILS--DFFLGWTLKLAHQLNIVRIAF 140 (249)
Q Consensus 113 ~~~~vI~--D~~~~~~~~vA~~lgiP~v~~ 140 (249)
.+|+|+. .--..++..+|..+|+|.++.
T Consensus 111 ~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 111 RVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred CCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 6898876 334467789999999998875
No 214
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.03 E-value=46 Score=22.27 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEcC
Q 041611 23 LPLLDLTHQLSLKDLDITILVT 44 (249)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~~t 44 (249)
+=||.|..++.++|.+|+|+.-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 4588999999999999999753
No 215
>PRK12342 hypothetical protein; Provisional
Probab=22.96 E-value=1.6e+02 Score=24.78 Aligned_cols=39 Identities=15% Similarity=-0.091 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCCcEEEecCCc-----cc-HHHHHhHcCCceEEEecc
Q 041611 103 IIDWFRSQANPPVAILSDFFL-----GW-TLKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 103 l~~ll~~~~~~~~~vI~D~~~-----~~-~~~vA~~lgiP~v~~~~~ 143 (249)
+.+.++.. .+|+|++-.-. .- ...+|+.+|+|.+.+...
T Consensus 101 La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 33444444 69999985433 22 368999999999987654
No 216
>PLN02293 adenine phosphoribosyltransferase
Probab=22.84 E-value=2.7e+02 Score=22.18 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhCCCCCcEEEe-cC-CcccHHHHHhHcCCceEEEe
Q 041611 99 LYDPIIDWFRSQANPPVAILS-DF-FLGWTLKLAHQLNIVRIAFF 141 (249)
Q Consensus 99 l~~~l~~ll~~~~~~~~~vI~-D~-~~~~~~~vA~~lgiP~v~~~ 141 (249)
+.+.+.+.+++. ++|+|+. |. -..++..+|.++|+|.+...
T Consensus 50 ~~~~l~~~~~~~--~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 50 TIDLFVERYRDM--GISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred HHHHHHHHHhhc--CCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 334444444444 6888876 22 33567899999999987654
No 217
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.79 E-value=2.1e+02 Score=18.69 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=25.9
Q ss_pred EEEcCCCCCChHHHHHHHHHHhhCCCcEEEEc
Q 041611 12 LIFPYPAQGHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 12 vl~p~p~~GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
++.-..+.|=-.-...|++.|++.|++|.++.
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 34455577778888999999999999998876
No 218
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=22.74 E-value=1.2e+02 Score=27.48 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 6 TRTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 6 ~~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
..+.|||++=-. .++ +..|++|...+++||++....
T Consensus 8 ~~~~~vVIvGgG-~aG----l~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTG-WAG----AYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCC-HHH----HHHHHHhCcCCCeEEEEcCCC
Confidence 346688877443 333 446788877789999998644
No 219
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.69 E-value=1.1e+02 Score=25.33 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=62.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccccccccCCCCceEEEecCCCCCCCCCCCCccccCCCCCc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPILSPLLDAHPAIKTLVLPFPSHPSIPPGIENVRELGNRGN 89 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~~~~~~~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~ 89 (249)
-|++--+|+.|-..=.-+|||.|.+++++|..++.... ..++ .. +.+|- .-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~-------------~~i~--~D---Eslpi-----------~k 53 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL-------------RGIL--WD---ESLPI-----------LK 53 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh-------------hhee--cc---cccch-----------HH
Confidence 35677789999999999999999999988765543211 1111 10 11111 00
Q ss_pred HHHHHHHHhcHHHHHHHH-HhCCCCCcEEEecCCcccH------HHHHhHcCCceEEEecchHHHHHHHHh
Q 041611 90 YPIMTALGKLYDPIIDWF-RSQANPPVAILSDFFLGWT------LKLAHQLNIVRIAFFSSGWLLASVADY 153 (249)
Q Consensus 90 ~~~~~~~~~l~~~l~~ll-~~~~~~~~~vI~D~~~~~~------~~vA~~lgiP~v~~~~~~a~~~~~~~~ 153 (249)
+.+.+.. .+...+++ +++ +-.+||+|-....- .-.|.++..++.+...-...-.+....
T Consensus 54 e~yres~---~ks~~rlldSal--kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN 119 (261)
T COG4088 54 EVYRESF---LKSVERLLDSAL--KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRN 119 (261)
T ss_pred HHHHHHH---HHHHHHHHHHHh--cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhh
Confidence 1122211 12222233 333 44589999765421 245788999998887766554444443
No 220
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.64 E-value=78 Score=26.00 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=18.1
Q ss_pred HHHHHHHhhCCCcEEEEcCCC
Q 041611 26 LDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~t~~ 46 (249)
.++|+.|++.||+|+.+-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999987643
No 221
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=22.63 E-value=2.2e+02 Score=22.75 Aligned_cols=40 Identities=13% Similarity=-0.004 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCCcEEEecC--CcccHHHHHhHcCCceEEEecc
Q 041611 102 PIIDWFRSQANPPVAILSDF--FLGWTLKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 102 ~l~~ll~~~~~~~~~vI~D~--~~~~~~~vA~~lgiP~v~~~~~ 143 (249)
.+.+.+++. ++|+|+.=- -...+..+|.++|+|.+...-.
T Consensus 41 ~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 41 EFARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred HHHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 333333444 789987622 2356778999999999987654
No 222
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=22.52 E-value=91 Score=24.75 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCCcEEEEcCCCCcccc
Q 041611 26 LDLTHQLSLKDLDITILVTPKNLPIL 51 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~t~~~~~~~ 51 (249)
.+|.++|.++|++|.++.|+...+.+
T Consensus 16 ~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 16 IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 78999999999999999998765444
No 223
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.39 E-value=1.7e+02 Score=23.25 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITIL 42 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~ 42 (249)
..|++-.-..|--.-+..+|++|+++|+.|.+.
T Consensus 15 ~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 15 PAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp EEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEEcCCCCCchHHHHHHHHHHhcCCCEEec
Confidence 344444567788888889999999999766554
No 224
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=22.32 E-value=79 Score=24.17 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHHHHHHhhCCCcEEEEcCCC
Q 041611 26 LDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~t~~ 46 (249)
..+|..|+.+||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999999864
No 225
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=22.28 E-value=74 Score=27.69 Aligned_cols=18 Identities=6% Similarity=0.338 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCCcEEEEc
Q 041611 26 LDLTHQLSLKDLDITILV 43 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~ 43 (249)
-..|++||+||++|.+++
T Consensus 63 KayA~eLAkrG~nvvLIs 80 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLIS 80 (312)
T ss_pred HHHHHHHHHcCCEEEEEe
Confidence 468999999999988886
No 226
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.15 E-value=2.2e+02 Score=22.66 Aligned_cols=50 Identities=6% Similarity=0.009 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCCcEEEecCCc-ccHHHHHhHcCCceEEEecchHHHHHH
Q 041611 101 DPIIDWFRSQANPPVAILSDFFL-GWTLKLAHQLNIVRIAFFSSGWLLASV 150 (249)
Q Consensus 101 ~~l~~ll~~~~~~~~~vI~D~~~-~~~~~vA~~lgiP~v~~~~~~a~~~~~ 150 (249)
..+++++++...+..++|--.+- .|+.-+|+++|+|.|.+.++-.....+
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~~l 97 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYELL 97 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHHHH
Confidence 34556666552122455555554 466789999999999998875443333
No 227
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.05 E-value=1.5e+02 Score=23.78 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCCcEEEecCCc--ccHHHHHhHcCCceEEEecch
Q 041611 102 PIIDWFRSQANPPVAILSDFFL--GWTLKLAHQLNIVRIAFFSSG 144 (249)
Q Consensus 102 ~l~~ll~~~~~~~~~vI~D~~~--~~~~~vA~~lgiP~v~~~~~~ 144 (249)
.++++++ + +||+||..... .....--.+.|+|.+.+....
T Consensus 52 ~~E~i~~-l--~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 52 NLEAILA-L--KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp -HHHHHH-T----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred cHHHHHh-C--CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 4455443 4 79999987766 344556678899999998876
No 228
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=21.97 E-value=1.4e+02 Score=24.90 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHHHHHhhCCCcEEEEcCCCCccc
Q 041611 17 PAQGHMLPLLDLTHQLSLKDLDITILVTPKNLPI 50 (249)
Q Consensus 17 p~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~ 50 (249)
.|.|=-.-.+-||..|+++|-+|+++=+..|...
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 5779999999999999999999999999887543
No 229
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.94 E-value=3.8e+02 Score=20.77 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCC-ccccccccc-CCCCceEEEecCCCCCCCCCCCCccccCCCCCcHHHHHHHHhcHHH
Q 041611 25 LLDLTHQLSLKDLDITILVTPKN-LPILSPLLD-AHPAIKTLVLPFPSHPSIPPGIENVRELGNRGNYPIMTALGKLYDP 102 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~~t~~~-~~~~~~~~~-~~~~i~~~~lp~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (249)
+..|.+....+|.+|.++.+... .+++...+. ..|+++++.... +.-+ ..-.+.
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~----g~f~--------------------~~~~~~ 92 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHH----GYFD--------------------EEEEEA 92 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecC----CCCC--------------------hhhHHH
Confidence 45566666678899999987542 222222111 247888875431 1100 001122
Q ss_pred HHHHHHhCCCCCcEEEecCCcc----cHHHHHhHcCCceEEEecc
Q 041611 103 IIDWFRSQANPPVAILSDFFLG----WTLKLAHQLNIVRIAFFSS 143 (249)
Q Consensus 103 l~~ll~~~~~~~~~vI~D~~~~----~~~~vA~~lgiP~v~~~~~ 143 (249)
+.+.+++. ++|+|+.-+-++ |+....++++.+ +.+...
T Consensus 93 i~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG 134 (172)
T PF03808_consen 93 IINRINAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVG 134 (172)
T ss_pred HHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEEC
Confidence 33334444 899999988776 777888888888 444333
No 230
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=21.70 E-value=84 Score=23.19 Aligned_cols=24 Identities=4% Similarity=-0.034 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 23 LPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 23 ~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
.-.+.|+++-++|||+|.+++...
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCc
Confidence 346778889899999999998654
No 231
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=21.68 E-value=84 Score=25.87 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCCcEEEEc
Q 041611 26 LDLTHQLSLKDLDITILV 43 (249)
Q Consensus 26 l~La~~La~~G~~VT~~~ 43 (249)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 578999999999999875
No 232
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=21.66 E-value=1.2e+02 Score=25.95 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=36.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhC--CCcEEEEcCCCCcccc
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLK--DLDITILVTPKNLPIL 51 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~--G~~VT~~~t~~~~~~~ 51 (249)
||+++-.-+.|-+.=...+.+.|.++ +.+||+++.+.+.+.+
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 79999999999999999999999885 9999999987665433
No 233
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=21.47 E-value=3.2e+02 Score=23.43 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCCCcEEEecCCccc----H---HHHHhHcCCceEEEecchHHHHHHHHh
Q 041611 102 PIIDWFRSQANPPVAILSDFFLGW----T---LKLAHQLNIVRIAFFSSGWLLASVADY 153 (249)
Q Consensus 102 ~l~~ll~~~~~~~~~vI~D~~~~~----~---~~vA~~lgiP~v~~~~~~a~~~~~~~~ 153 (249)
.+...+++. .--++|+|.-++. + ...|++.||+++.+-..+|...+++.+
T Consensus 69 ~li~~l~~g--~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~S 125 (275)
T COG0313 69 KLIPLLKKG--KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSAS 125 (275)
T ss_pred HHHHHHhcC--CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHc
Confidence 344444443 4678999987763 2 355889999999999888887777753
No 234
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=21.47 E-value=73 Score=26.75 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHHhhCCCcEEEEcCC
Q 041611 27 DLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 27 ~La~~La~~G~~VT~~~t~ 45 (249)
-+|..|++.||+||++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999865
No 235
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.45 E-value=1.7e+02 Score=22.67 Aligned_cols=40 Identities=13% Similarity=-0.141 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCccc--HHHHHhHcCCceEEEec
Q 041611 100 YDPIIDWFRSQANPPVAILSDFFLGW--TLKLAHQLNIVRIAFFS 142 (249)
Q Consensus 100 ~~~l~~ll~~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~~~~ 142 (249)
...++++++ + +||+||......- ..+--++.|||.+.+..
T Consensus 59 ~~n~E~ll~-l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 59 SLNVELIVA-L--KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCHHHHhc-c--CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 355666654 3 7999988543322 33445789999988753
No 236
>PRK04940 hypothetical protein; Provisional
Probab=21.40 E-value=2.9e+02 Score=21.99 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=24.8
Q ss_pred CcEEEecCCc-ccHHHHHhHcCCceEEEecchHH
Q 041611 114 PVAILSDFFL-GWTLKLAHQLNIVRIAFFSSGWL 146 (249)
Q Consensus 114 ~~~vI~D~~~-~~~~~vA~~lgiP~v~~~~~~a~ 146 (249)
..+||--.+- .||.-+|+++|+|.|.+.+.---
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFP 94 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCCCh
Confidence 4555554443 58899999999999999987543
No 237
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=21.33 E-value=1e+02 Score=26.21 Aligned_cols=37 Identities=11% Similarity=0.278 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
.+++++. .+.| +.|++.+++.|+++|.+|+++-...+
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 4676665 2333 89999999999999999998876544
No 238
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.30 E-value=53 Score=27.77 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCcEE-EecCCc-ccHHHHHhHcCCceEEEecchH
Q 041611 113 PPVAI-LSDFFL-GWTLKLAHQLNIVRIAFFSSGW 145 (249)
Q Consensus 113 ~~~~v-I~D~~~-~~~~~vA~~lgiP~v~~~~~~a 145 (249)
.||+| |.|.-. ..+..-|.++|||.+.+.-+.+
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 57765 557654 3456779999999999865543
No 239
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.11 E-value=2.2e+02 Score=24.11 Aligned_cols=28 Identities=11% Similarity=-0.047 Sum_probs=15.3
Q ss_pred CCcEEEecCCcc--cHHHHHhHcCCceEEE
Q 041611 113 PPVAILSDFFLG--WTLKLAHQLNIVRIAF 140 (249)
Q Consensus 113 ~~~~vI~D~~~~--~~~~vA~~lgiP~v~~ 140 (249)
++.||+++.... .+..+|++.|++.+.+
T Consensus 220 ~v~~if~e~~~~~~~~~~la~~~g~~v~~l 249 (282)
T cd01017 220 DVKYIFFEENASSKIAETLAKETGAKLLVL 249 (282)
T ss_pred CCCEEEEeCCCChHHHHHHHHHcCCcEEEe
Confidence 566666665443 2235666666665544
No 240
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.11 E-value=2.7e+02 Score=23.11 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCCc
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKNL 48 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~~ 48 (249)
+.|--.=..+|+..+...|++||+++|+...
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 5677777788999999999999999998753
No 241
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.91 E-value=88 Score=25.33 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=15.9
Q ss_pred HHHHHHhhCCCcEEEEcCC
Q 041611 27 DLTHQLSLKDLDITILVTP 45 (249)
Q Consensus 27 ~La~~La~~G~~VT~~~t~ 45 (249)
.+.++...|||+||-++-.
T Consensus 15 ~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 15 RILKEALKRGHEVTAIVRN 33 (211)
T ss_pred HHHHHHHhCCCeeEEEEeC
Confidence 5778888999999998753
No 242
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.88 E-value=1.8e+02 Score=26.44 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.4
Q ss_pred HHHHHHHHhhCCCcEEEE
Q 041611 25 LLDLTHQLSLKDLDITIL 42 (249)
Q Consensus 25 ~l~La~~La~~G~~VT~~ 42 (249)
+.+|-+.|..-|.+++++
T Consensus 176 ~~el~~lL~~~Gl~~~~~ 193 (435)
T cd01974 176 MREIKRLLELMGVDYTIL 193 (435)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 677888888889988764
No 243
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.81 E-value=1.2e+02 Score=23.71 Aligned_cols=32 Identities=6% Similarity=0.220 Sum_probs=22.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 10 HILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 10 hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
++++++ +-|.+.| |+.+|.++|.+|+.++.+.
T Consensus 108 ~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 108 AVALVT--RDADFLP---VINKAKENGKETIVIGAEP 139 (160)
T ss_pred EEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCC
Confidence 444543 4566665 5567788999999999754
No 244
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=20.65 E-value=87 Score=28.04 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEc
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
++--|++|....-|+-+-...+|..||++|+-|..+-
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aie 134 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIE 134 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE-
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEec
Confidence 3456899999999999999999999999998766654
No 245
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.59 E-value=74 Score=25.19 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=25.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcEEEEcCCCCcccc
Q 041611 18 AQGHMLPLLDLTHQLSLKDLDITILVTPKNLPIL 51 (249)
Q Consensus 18 ~~GHi~P~l~La~~La~~G~~VT~~~t~~~~~~~ 51 (249)
|.+...-...|.+.|.++|++|.++.|+...+.+
T Consensus 9 Gs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 9 GSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 3344556679999999999999999987654433
No 246
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=20.59 E-value=4e+02 Score=20.45 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=40.7
Q ss_pred cHHHHHhHcCCceEEEecchHHHHHHHHhhhccCCCCCCCccccCCCCCCCccccccCCChhhcccCCCCchhhHHHHHH
Q 041611 125 WTLKLAHQLNIVRIAFFSSGWLLASVADYCWHHIGDVKSLDVVEFPDLPRYPVFKRRHLPSMVRSYKESDPESQFVKDGN 204 (249)
Q Consensus 125 ~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~ 204 (249)
.++++|-++|||+=..++-+- ..+|+. +|. .++..++|+ ..+-.+..
T Consensus 12 AALDaAi~~gi~~GGWcP~GR--------------~aEDG~------ip~--~Y~L~E~~~-----------~~Y~~RT~ 58 (145)
T PF12694_consen 12 AALDAAIAHGIPHGGWCPKGR--------------RAEDGP------IPA--RYPLQETPS-----------SGYRQRTE 58 (145)
T ss_dssp HHHHHHHHTT--EE-EE-GGG----------------TTSS--------T--TS--EE-SS-------------HHHHHH
T ss_pred HHHHHHHHcCCCccCcCCCCc--------------ccccCc------CCc--cccceecCC-----------CCHHHHHH
Confidence 357888889998876655421 123321 222 144444332 12445667
Q ss_pred HhhhcCcEEeecchhhhhHHHHH--HHHHHhCCCCeEEe
Q 041611 205 LANTSSWGCVFNSFDALEGEYSD--YLKRKMGHDRVFGV 241 (249)
Q Consensus 205 ~~~~~a~~vl~NTf~eLE~~~~~--~l~~~~~~~~v~~V 241 (249)
.+..+||+-|+=+..+|.+...- .+....+ +|++.|
T Consensus 59 ~NV~DsDgTlI~~~g~l~GGt~lT~~~a~~~~-KP~l~i 96 (145)
T PF12694_consen 59 WNVRDSDGTLIFTRGELTGGTALTVEFARKHG-KPCLHI 96 (145)
T ss_dssp HHHHTSSEEEEEESSS--HHHHHHHHHHHHTT---EEEE
T ss_pred hhhhhcCeEEEEecCCCCcHHHHHHHHHHHhC-CCEEEE
Confidence 78899999888888899865432 2334455 788776
No 247
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.51 E-value=1.8e+02 Score=23.27 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=30.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEcCCCC
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLKDLDITILVTPKN 47 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~t~~~ 47 (249)
++++=..|.|=..-..+||.++..+|.+|.++++...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 4467777899999999999999999999999998765
No 248
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=20.42 E-value=98 Score=25.34 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=21.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHhhCCCcEEEEc
Q 041611 11 ILIFPYPAQGHMLPLLDLTHQLSLKDLDITILV 43 (249)
Q Consensus 11 vvl~p~p~~GHi~P~l~La~~La~~G~~VT~~~ 43 (249)
=+++|.-|.||- +..|+++||+|+=+=
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvD 66 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVD 66 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEE
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEe
Confidence 466899999986 567788999987764
No 249
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=20.35 E-value=2.7e+02 Score=19.64 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCcEEEecCCcccHH--HHHhHcCCceE
Q 041611 102 PIIDWFRSQANPPVAILSDFFLGWTL--KLAHQLNIVRI 138 (249)
Q Consensus 102 ~l~~ll~~~~~~~~~vI~D~~~~~~~--~vA~~lgiP~v 138 (249)
.++++++.. .+|+||.|.-.+..+ .+.+.+|++++
T Consensus 48 ei~~~~~~~--~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 48 EIKELIEEL--DADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHhhc--CCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 344445555 789999988776663 77888888764
No 250
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=20.25 E-value=2.3e+02 Score=22.38 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=29.5
Q ss_pred ceEEEEcC--CCCCChHHHHHHHHHHhhCCCcEEEEcCCC
Q 041611 9 THILIFPY--PAQGHMLPLLDLTHQLSLKDLDITILVTPK 46 (249)
Q Consensus 9 ~hvvl~p~--p~~GHi~P~l~La~~La~~G~~VT~~~t~~ 46 (249)
.+++.|.. ++.|=-.-...||+.|+++|.+|.++-...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 55555543 566788889999999999999999986543
No 251
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=20.08 E-value=2.3e+02 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHhhCCCc
Q 041611 9 THILIFPYPAQGHMLPLLDLTHQLSLKDLD 38 (249)
Q Consensus 9 ~hvvl~p~p~~GHi~P~l~La~~La~~G~~ 38 (249)
+-||+.-+|+.|--.=..+|.+.|+++|++
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 457788899999999999999999999974
No 252
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.02 E-value=1.6e+02 Score=22.01 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHhhCCC-cEEEEcC
Q 041611 7 RTTHILIFPYPAQGHMLPLLDLTHQLSLKDL-DITILVT 44 (249)
Q Consensus 7 ~~~hvvl~p~p~~GHi~P~l~La~~La~~G~-~VT~~~t 44 (249)
..++++.++.-..+|.-=+-++.++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678999999888999999999999999886 5666654
Done!