Query 041612
Match_columns 276
No_of_seqs 185 out of 2109
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.4E-37 9.5E-42 290.7 22.0 238 38-276 25-377 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5.6E-30 1.2E-34 217.8 10.8 173 103-275 7-216 (287)
3 PLN03210 Resistant to P. syrin 99.9 1.4E-25 3E-30 221.5 18.5 234 30-275 104-408 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.0 2.5E-08 5.4E-13 84.0 15.8 154 110-266 40-242 (269)
5 PF05729 NACHT: NACHT domain 98.9 2E-08 4.3E-13 77.9 9.9 119 114-232 1-163 (166)
6 PRK04841 transcriptional regul 98.7 2.8E-07 6.1E-12 90.5 14.2 155 103-267 21-230 (903)
7 PRK06893 DNA replication initi 98.5 1E-06 2.2E-11 72.4 10.5 144 113-263 39-204 (229)
8 COG2256 MGS1 ATPase related to 98.5 1.3E-06 2.9E-11 75.1 10.3 123 103-232 38-176 (436)
9 PF01637 Arch_ATPase: Archaeal 98.4 1.2E-06 2.7E-11 71.7 8.8 51 211-261 183-233 (234)
10 PRK00411 cdc6 cell division co 98.4 1.4E-05 3.1E-10 71.1 16.1 156 110-265 52-258 (394)
11 TIGR00635 ruvB Holliday juncti 98.4 6E-06 1.3E-10 70.9 13.0 148 112-266 29-205 (305)
12 PRK13342 recombination factor 98.4 7.6E-06 1.7E-10 73.2 13.6 155 103-264 26-198 (413)
13 PF05496 RuvB_N: Holliday junc 98.4 1.2E-05 2.6E-10 64.7 12.3 150 111-267 48-226 (233)
14 KOG2028 ATPase related to the 98.3 5E-06 1.1E-10 70.8 9.2 125 103-231 152-293 (554)
15 PRK00080 ruvB Holliday junctio 98.3 1.5E-05 3.3E-10 69.1 12.6 148 112-266 50-226 (328)
16 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.4E-06 1.2E-10 67.9 9.3 156 103-264 28-203 (226)
17 cd01128 rho_factor Transcripti 98.2 2.8E-06 6E-11 70.4 6.7 52 112-164 15-68 (249)
18 PRK09376 rho transcription ter 98.2 2.7E-06 5.8E-11 74.0 5.7 52 113-165 169-222 (416)
19 TIGR02928 orc1/cdc6 family rep 98.2 9.7E-05 2.1E-09 65.0 15.6 149 111-259 38-243 (365)
20 COG2909 MalT ATP-dependent tra 98.2 5.2E-05 1.1E-09 71.2 13.7 158 103-267 26-238 (894)
21 PRK05564 DNA polymerase III su 98.1 8.6E-05 1.9E-09 64.0 14.1 152 103-260 15-188 (313)
22 PRK08084 DNA replication initi 98.1 5.8E-05 1.2E-09 62.3 11.8 149 110-262 42-209 (235)
23 COG3903 Predicted ATPase [Gene 98.1 8.9E-06 1.9E-10 70.5 6.4 149 112-267 13-194 (414)
24 TIGR02903 spore_lon_C ATP-depe 98.1 0.0013 2.9E-08 61.7 21.2 38 103-140 165-202 (615)
25 PRK12402 replication factor C 98.0 0.00019 4E-09 62.4 14.6 157 103-261 26-225 (337)
26 PLN03025 replication factor C 98.0 9E-05 1.9E-09 64.1 12.1 153 103-258 24-196 (319)
27 PF13173 AAA_14: AAA domain 98.0 2.3E-05 5E-10 58.3 7.3 109 113-224 2-127 (128)
28 TIGR01242 26Sp45 26S proteasom 98.0 0.0001 2.2E-09 65.0 12.3 142 111-256 154-328 (364)
29 PRK09087 hypothetical protein; 98.0 7.2E-05 1.6E-09 61.3 10.3 139 113-261 44-194 (226)
30 PRK08118 topology modulation p 98.0 5.5E-06 1.2E-10 64.6 3.1 36 114-149 2-38 (167)
31 PRK05642 DNA replication initi 98.0 7.8E-05 1.7E-09 61.5 10.0 147 114-264 46-210 (234)
32 TIGR00678 holB DNA polymerase 98.0 0.00031 6.7E-09 55.8 13.0 147 104-258 4-187 (188)
33 PF13401 AAA_22: AAA domain; P 97.9 2.3E-05 5E-10 58.2 5.3 63 112-174 3-68 (131)
34 PRK03992 proteasome-activating 97.9 0.00025 5.4E-09 63.0 12.4 136 111-255 163-336 (389)
35 PRK07003 DNA polymerase III su 97.9 0.00055 1.2E-08 64.5 14.6 160 103-264 27-223 (830)
36 PRK14949 DNA polymerase III su 97.9 0.00026 5.6E-09 67.8 12.7 157 103-261 27-219 (944)
37 PRK13341 recombination factor 97.9 0.00016 3.5E-09 68.7 11.2 148 103-255 42-210 (725)
38 PRK08727 hypothetical protein; 97.8 0.0002 4.4E-09 59.0 10.1 140 114-259 42-201 (233)
39 TIGR00767 rho transcription te 97.8 5.3E-05 1.2E-09 66.3 6.9 53 113-166 168-222 (415)
40 PRK08903 DnaA regulatory inact 97.8 0.00013 2.7E-09 59.9 8.9 149 112-267 41-204 (227)
41 PRK00440 rfc replication facto 97.8 0.00079 1.7E-08 58.0 14.2 157 103-261 28-202 (319)
42 PTZ00361 26 proteosome regulat 97.8 0.00043 9.2E-09 62.0 12.4 29 111-139 215-243 (438)
43 PRK12323 DNA polymerase III su 97.8 0.00027 5.7E-09 65.6 11.3 158 103-262 27-225 (700)
44 PRK12727 flagellar biosynthesi 97.7 0.00084 1.8E-08 61.0 13.3 40 112-151 349-388 (559)
45 PRK14961 DNA polymerase III su 97.7 0.0014 3E-08 57.7 14.2 155 103-259 27-217 (363)
46 PRK14963 DNA polymerase III su 97.7 0.0014 3.1E-08 60.0 14.2 155 103-259 25-214 (504)
47 PTZ00454 26S protease regulato 97.7 0.00071 1.5E-08 60.1 11.9 29 111-139 177-205 (398)
48 PRK07940 DNA polymerase III su 97.6 0.0016 3.5E-08 57.7 13.5 140 113-260 36-211 (394)
49 PRK14957 DNA polymerase III su 97.6 0.0016 3.4E-08 60.0 13.6 159 103-263 27-222 (546)
50 PRK07261 topology modulation p 97.6 0.00017 3.6E-09 56.5 6.4 54 115-168 2-56 (171)
51 COG2255 RuvB Holliday junction 97.6 0.0021 4.5E-08 53.5 12.8 148 111-267 50-228 (332)
52 TIGR03499 FlhF flagellar biosy 97.6 0.0041 8.9E-08 52.7 14.7 61 112-172 193-254 (282)
53 PRK04195 replication factor C 97.6 0.0015 3.2E-08 59.8 12.9 141 113-260 39-200 (482)
54 PF00308 Bac_DnaA: Bacterial d 97.6 0.00045 9.7E-09 56.3 8.4 144 113-263 34-209 (219)
55 PF13207 AAA_17: AAA domain; P 97.6 7.2E-05 1.6E-09 54.8 3.4 23 115-137 1-23 (121)
56 PRK14087 dnaA chromosomal repl 97.5 0.0008 1.7E-08 60.8 10.6 148 113-266 141-323 (450)
57 PRK14722 flhF flagellar biosyn 97.5 0.0034 7.3E-08 55.1 14.0 62 112-173 136-198 (374)
58 cd00009 AAA The AAA+ (ATPases 97.5 0.00029 6.3E-09 52.7 6.6 51 103-155 9-59 (151)
59 PRK14962 DNA polymerase III su 97.5 0.0027 5.8E-08 57.7 13.7 163 103-267 25-224 (472)
60 PF05621 TniB: Bacterial TniB 97.5 0.0026 5.7E-08 53.6 12.7 66 111-176 59-128 (302)
61 PRK07994 DNA polymerase III su 97.5 0.0018 3.9E-08 60.7 12.4 157 103-261 27-219 (647)
62 PRK11331 5-methylcytosine-spec 97.5 0.0002 4.4E-09 63.7 5.7 57 103-161 186-242 (459)
63 PRK06645 DNA polymerase III su 97.5 0.0033 7.1E-08 57.5 13.6 155 103-259 32-226 (507)
64 COG1222 RPT1 ATP-dependent 26S 97.5 0.0092 2E-07 51.3 15.2 38 103-140 175-212 (406)
65 TIGR03689 pup_AAA proteasome A 97.5 0.0063 1.4E-07 55.6 15.1 35 106-140 209-243 (512)
66 PRK14960 DNA polymerase III su 97.5 0.0023 5.1E-08 59.7 12.4 156 103-260 26-217 (702)
67 PTZ00202 tuzin; Provisional 97.4 0.0022 4.8E-08 56.9 11.4 54 111-172 284-337 (550)
68 TIGR02881 spore_V_K stage V sp 97.4 0.0044 9.5E-08 52.0 13.0 27 112-138 41-67 (261)
69 PRK08181 transposase; Validate 97.4 0.0026 5.6E-08 53.4 11.5 37 113-151 106-142 (269)
70 TIGR02880 cbbX_cfxQ probable R 97.4 0.0077 1.7E-07 51.2 14.5 26 115-140 60-85 (284)
71 PRK05703 flhF flagellar biosyn 97.4 0.008 1.7E-07 53.9 15.2 38 113-151 221-259 (424)
72 PRK06620 hypothetical protein; 97.4 0.00093 2E-08 54.2 8.1 132 114-259 45-186 (214)
73 PRK14956 DNA polymerase III su 97.4 0.0019 4.1E-08 58.2 10.6 155 103-259 29-219 (484)
74 PRK14951 DNA polymerase III su 97.4 0.0032 7E-08 58.8 12.5 157 103-261 27-224 (618)
75 CHL00181 cbbX CbbX; Provisiona 97.4 0.0061 1.3E-07 51.8 13.3 26 114-139 60-85 (287)
76 PRK09112 DNA polymerase III su 97.4 0.0093 2E-07 52.1 14.6 74 187-263 167-241 (351)
77 PRK07471 DNA polymerase III su 97.4 0.01 2.2E-07 52.2 14.8 72 187-263 167-239 (365)
78 PRK14964 DNA polymerase III su 97.3 0.004 8.6E-08 56.6 12.3 155 103-259 24-214 (491)
79 TIGR02397 dnaX_nterm DNA polym 97.3 0.0096 2.1E-07 52.1 14.4 158 103-263 25-219 (355)
80 PRK14958 DNA polymerase III su 97.3 0.0041 8.8E-08 57.1 12.2 156 103-260 27-218 (509)
81 COG1474 CDC6 Cdc6-related prot 97.3 0.012 2.6E-07 51.7 14.3 65 105-169 34-98 (366)
82 PRK14969 DNA polymerase III su 97.3 0.0049 1.1E-07 56.9 12.4 158 103-262 27-221 (527)
83 PRK14955 DNA polymerase III su 97.3 0.0036 7.8E-08 55.8 11.0 152 103-257 27-223 (397)
84 TIGR00362 DnaA chromosomal rep 97.2 0.0054 1.2E-07 54.9 12.1 142 113-257 136-305 (405)
85 PRK08691 DNA polymerase III su 97.2 0.0048 1E-07 58.0 11.8 157 103-261 27-219 (709)
86 KOG0730 AAA+-type ATPase [Post 97.2 0.0091 2E-07 55.1 13.2 34 107-140 462-495 (693)
87 PRK14954 DNA polymerase III su 97.2 0.0068 1.5E-07 56.8 12.7 155 103-262 27-229 (620)
88 PF13191 AAA_16: AAA ATPase do 97.2 0.00073 1.6E-08 53.2 5.5 32 109-140 20-51 (185)
89 PRK14971 DNA polymerase III su 97.2 0.0065 1.4E-07 57.1 12.5 152 103-257 28-217 (614)
90 PRK07764 DNA polymerase III su 97.2 0.008 1.7E-07 58.2 13.3 152 103-257 26-216 (824)
91 PRK05707 DNA polymerase III su 97.2 0.0096 2.1E-07 51.6 12.5 142 113-261 22-202 (328)
92 PRK14970 DNA polymerase III su 97.2 0.015 3.3E-07 51.2 14.0 160 103-264 28-212 (367)
93 TIGR01241 FtsH_fam ATP-depende 97.2 0.011 2.3E-07 54.5 13.3 28 112-139 87-114 (495)
94 COG1102 Cmk Cytidylate kinase 97.2 0.00056 1.2E-08 52.0 4.1 46 114-172 1-46 (179)
95 PRK14088 dnaA chromosomal repl 97.1 0.0061 1.3E-07 55.1 11.4 134 113-254 130-297 (440)
96 PRK09111 DNA polymerase III su 97.1 0.0084 1.8E-07 56.1 12.6 158 103-262 35-233 (598)
97 PRK05896 DNA polymerase III su 97.1 0.011 2.3E-07 55.0 12.7 157 103-264 27-223 (605)
98 PRK05541 adenylylsulfate kinas 97.1 0.00084 1.8E-08 52.7 4.8 36 112-149 6-41 (176)
99 COG1618 Predicted nucleotide k 97.1 0.00082 1.8E-08 51.1 4.3 29 113-141 5-33 (179)
100 PF13238 AAA_18: AAA domain; P 97.1 0.0005 1.1E-08 50.6 3.2 22 116-137 1-22 (129)
101 PHA00729 NTP-binding motif con 97.1 0.00074 1.6E-08 54.8 4.3 35 103-137 7-41 (226)
102 PRK00149 dnaA chromosomal repl 97.1 0.0031 6.7E-08 57.2 8.8 139 113-256 148-316 (450)
103 PRK12726 flagellar biosynthesi 97.1 0.024 5.2E-07 49.7 13.6 60 112-173 205-265 (407)
104 PF00004 AAA: ATPase family as 97.1 0.00057 1.2E-08 50.5 3.4 23 116-138 1-23 (132)
105 PRK14959 DNA polymerase III su 97.1 0.012 2.5E-07 55.0 12.4 162 103-267 27-226 (624)
106 PRK06547 hypothetical protein; 97.1 0.00083 1.8E-08 52.6 4.3 33 106-138 8-40 (172)
107 PF00485 PRK: Phosphoribulokin 97.0 0.0006 1.3E-08 54.5 3.6 26 115-140 1-26 (194)
108 PRK00771 signal recognition pa 97.0 0.011 2.3E-07 53.2 11.7 58 112-171 94-152 (437)
109 PRK14974 cell division protein 97.0 0.012 2.6E-07 51.1 11.6 58 112-172 139-198 (336)
110 PRK06995 flhF flagellar biosyn 97.0 0.039 8.4E-07 50.2 15.2 60 113-172 256-316 (484)
111 PRK08233 hypothetical protein; 97.0 0.00065 1.4E-08 53.4 3.5 26 113-138 3-28 (182)
112 PRK06762 hypothetical protein; 97.0 0.00065 1.4E-08 52.7 3.4 25 113-137 2-26 (166)
113 PRK05480 uridine/cytidine kina 97.0 0.00074 1.6E-08 54.6 3.8 27 111-137 4-30 (209)
114 PF07728 AAA_5: AAA domain (dy 97.0 0.0017 3.7E-08 48.7 5.6 41 116-161 2-42 (139)
115 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0052 1.1E-07 56.0 9.5 28 112-139 258-285 (489)
116 PF13671 AAA_33: AAA domain; P 97.0 0.00074 1.6E-08 50.8 3.5 24 115-138 1-24 (143)
117 PRK08451 DNA polymerase III su 97.0 0.031 6.7E-07 51.5 14.4 158 103-262 25-218 (535)
118 TIGR01243 CDC48 AAA family ATP 97.0 0.0078 1.7E-07 58.0 11.0 29 111-139 485-513 (733)
119 PRK14721 flhF flagellar biosyn 97.0 0.093 2E-06 46.9 16.9 62 112-173 190-252 (420)
120 COG0593 DnaA ATPase involved i 97.0 0.0042 9E-08 54.9 8.2 120 112-233 112-258 (408)
121 smart00382 AAA ATPases associa 96.9 0.0012 2.6E-08 48.9 4.3 37 114-152 3-39 (148)
122 PTZ00301 uridine kinase; Provi 96.9 0.00081 1.8E-08 54.3 3.5 26 113-138 3-28 (210)
123 PRK06696 uridine kinase; Valid 96.9 0.0012 2.6E-08 54.0 4.5 30 110-139 19-48 (223)
124 PHA02544 44 clamp loader, smal 96.9 0.0076 1.6E-07 51.9 9.8 36 103-138 32-68 (316)
125 PRK14952 DNA polymerase III su 96.9 0.018 4E-07 53.6 12.6 159 103-264 24-222 (584)
126 TIGR00235 udk uridine kinase. 96.9 0.00093 2E-08 54.0 3.8 28 111-138 4-31 (207)
127 cd02019 NK Nucleoside/nucleoti 96.9 0.0009 2E-08 43.8 3.0 23 115-137 1-23 (69)
128 PRK12422 chromosomal replicati 96.9 0.017 3.6E-07 52.3 12.0 112 114-233 142-285 (445)
129 PRK14086 dnaA chromosomal repl 96.9 0.0095 2.1E-07 55.4 10.5 118 114-233 315-460 (617)
130 PRK03839 putative kinase; Prov 96.9 0.00091 2E-08 52.7 3.3 25 115-139 2-26 (180)
131 PRK10416 signal recognition pa 96.9 0.015 3.3E-07 50.1 11.0 29 112-140 113-141 (318)
132 PRK14723 flhF flagellar biosyn 96.9 0.039 8.4E-07 52.7 14.3 61 113-173 185-246 (767)
133 PRK08116 hypothetical protein; 96.9 0.0014 3.1E-08 55.1 4.5 36 114-151 115-150 (268)
134 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.4E-08 52.4 3.5 26 112-137 2-27 (188)
135 PRK12723 flagellar biosynthesi 96.8 0.047 1E-06 48.4 13.8 62 112-173 173-237 (388)
136 KOG2004 Mitochondrial ATP-depe 96.8 0.0084 1.8E-07 55.9 9.2 29 112-140 437-465 (906)
137 PRK14953 DNA polymerase III su 96.8 0.044 9.6E-07 50.1 13.8 158 103-262 27-220 (486)
138 PRK08058 DNA polymerase III su 96.8 0.037 8E-07 48.1 12.8 128 103-231 17-181 (329)
139 PRK04040 adenylate kinase; Pro 96.8 0.0013 2.8E-08 52.3 3.4 26 113-138 2-27 (188)
140 PF01583 APS_kinase: Adenylyls 96.8 0.0025 5.3E-08 48.8 4.8 36 113-150 2-37 (156)
141 TIGR02237 recomb_radB DNA repa 96.8 0.0036 7.7E-08 50.5 6.1 47 113-162 12-58 (209)
142 CHL00176 ftsH cell division pr 96.8 0.044 9.6E-07 51.7 14.0 27 112-138 215-241 (638)
143 PRK14950 DNA polymerase III su 96.8 0.055 1.2E-06 50.8 14.5 156 103-261 27-220 (585)
144 PRK06305 DNA polymerase III su 96.7 0.043 9.2E-07 49.8 13.3 157 103-262 28-223 (451)
145 PRK06871 DNA polymerase III su 96.7 0.057 1.2E-06 46.6 13.4 150 103-259 13-200 (325)
146 PTZ00112 origin recognition co 96.7 0.059 1.3E-06 52.1 14.4 55 114-168 782-841 (1164)
147 PRK10867 signal recognition pa 96.7 0.018 4E-07 51.6 10.7 29 112-140 99-127 (433)
148 PF00448 SRP54: SRP54-type pro 96.7 0.0042 9.1E-08 49.7 6.0 59 113-173 1-60 (196)
149 PRK07133 DNA polymerase III su 96.7 0.04 8.7E-07 52.4 13.3 157 103-262 29-220 (725)
150 KOG0733 Nuclear AAA ATPase (VC 96.7 0.058 1.3E-06 49.7 13.6 38 103-140 535-572 (802)
151 PRK00131 aroK shikimate kinase 96.7 0.0017 3.8E-08 50.5 3.7 27 112-138 3-29 (175)
152 KOG0989 Replication factor C, 96.7 0.0093 2E-07 50.2 8.0 152 103-255 47-223 (346)
153 COG0466 Lon ATP-dependent Lon 96.7 0.0023 5.1E-08 59.5 4.9 56 84-140 316-377 (782)
154 KOG0731 AAA+-type ATPase conta 96.7 0.028 6.1E-07 53.3 11.9 149 103-259 325-521 (774)
155 PRK09183 transposase/IS protei 96.7 0.0085 1.9E-07 50.1 7.9 28 113-140 102-129 (259)
156 COG0572 Udk Uridine kinase [Nu 96.7 0.0019 4E-08 52.0 3.6 29 112-140 7-35 (218)
157 COG1703 ArgK Putative periplas 96.7 0.0025 5.5E-08 53.4 4.4 58 103-160 39-98 (323)
158 PRK07667 uridine kinase; Provi 96.7 0.0025 5.3E-08 50.9 4.2 28 112-139 16-43 (193)
159 PF00910 RNA_helicase: RNA hel 96.6 0.0015 3.2E-08 46.9 2.6 23 116-138 1-23 (107)
160 PRK00625 shikimate kinase; Pro 96.6 0.0019 4.2E-08 50.5 3.5 25 115-139 2-26 (173)
161 PF03205 MobB: Molybdopterin g 96.6 0.0036 7.8E-08 47.2 4.8 39 114-153 1-39 (140)
162 cd02023 UMPK Uridine monophosp 96.6 0.0016 3.5E-08 52.1 2.9 23 115-137 1-23 (198)
163 TIGR00959 ffh signal recogniti 96.6 0.038 8.3E-07 49.5 11.8 27 112-138 98-124 (428)
164 PRK14965 DNA polymerase III su 96.6 0.035 7.7E-07 51.9 12.1 160 103-265 27-224 (576)
165 PF10443 RNA12: RNA12 protein; 96.6 0.14 3E-06 45.5 14.9 85 188-272 180-289 (431)
166 PRK06217 hypothetical protein; 96.6 0.0021 4.6E-08 50.8 3.5 36 114-150 2-39 (183)
167 PF14516 AAA_35: AAA-like doma 96.6 0.092 2E-06 45.7 13.8 54 209-267 191-244 (331)
168 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0018 3.9E-08 51.1 3.0 24 115-138 1-24 (183)
169 TIGR01425 SRP54_euk signal rec 96.6 0.036 7.7E-07 49.6 11.4 29 112-140 99-127 (429)
170 PRK06090 DNA polymerase III su 96.6 0.097 2.1E-06 45.1 13.7 149 103-262 14-201 (319)
171 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0069 1.5E-07 49.8 6.6 48 113-160 19-70 (235)
172 COG1936 Predicted nucleotide k 96.6 0.0018 4E-08 49.8 2.8 21 114-134 1-21 (180)
173 TIGR00554 panK_bact pantothena 96.6 0.019 4.1E-07 48.7 9.2 28 111-138 60-87 (290)
174 TIGR02322 phosphon_PhnN phosph 96.6 0.0023 4.9E-08 50.3 3.4 26 114-139 2-27 (179)
175 cd02025 PanK Pantothenate kina 96.6 0.0018 3.8E-08 52.9 2.8 24 115-138 1-24 (220)
176 cd01120 RecA-like_NTPases RecA 96.5 0.0034 7.5E-08 48.0 4.3 39 115-155 1-39 (165)
177 PRK09270 nucleoside triphospha 96.5 0.0031 6.7E-08 51.8 4.2 30 111-140 31-60 (229)
178 PF00625 Guanylate_kin: Guanyl 96.5 0.0045 9.7E-08 48.9 4.9 37 113-151 2-38 (183)
179 COG1124 DppF ABC-type dipeptid 96.5 0.0033 7.2E-08 51.1 4.1 28 113-140 33-60 (252)
180 PRK06526 transposase; Provisio 96.5 0.0079 1.7E-07 50.2 6.5 29 112-140 97-125 (254)
181 COG0563 Adk Adenylate kinase a 96.5 0.0024 5.3E-08 50.2 3.3 25 115-139 2-26 (178)
182 PRK08769 DNA polymerase III su 96.5 0.1 2.2E-06 45.0 13.4 152 103-262 15-208 (319)
183 PRK06851 hypothetical protein; 96.5 0.049 1.1E-06 47.7 11.6 55 103-158 204-258 (367)
184 cd00227 CPT Chloramphenicol (C 96.5 0.0025 5.5E-08 49.9 3.4 25 114-138 3-27 (175)
185 KOG2035 Replication factor C, 96.5 0.13 2.7E-06 43.1 13.1 163 103-267 24-233 (351)
186 PF03308 ArgK: ArgK protein; 96.5 0.0052 1.1E-07 50.7 5.1 48 112-159 28-75 (266)
187 COG1373 Predicted ATPase (AAA+ 96.5 0.058 1.2E-06 48.1 12.2 117 103-226 28-161 (398)
188 PRK10751 molybdopterin-guanine 96.5 0.0033 7.1E-08 49.1 3.8 29 112-140 5-33 (173)
189 TIGR00073 hypB hydrogenase acc 96.5 0.0031 6.7E-08 50.9 3.8 32 107-138 16-47 (207)
190 cd02024 NRK1 Nicotinamide ribo 96.5 0.0023 5E-08 50.7 2.9 23 115-137 1-23 (187)
191 TIGR03345 VI_ClpV1 type VI sec 96.5 0.045 9.7E-07 53.6 12.2 37 103-139 198-234 (852)
192 PRK05439 pantothenate kinase; 96.5 0.014 3E-07 50.0 7.8 28 111-138 84-111 (311)
193 PRK05563 DNA polymerase III su 96.5 0.078 1.7E-06 49.4 13.4 154 103-259 27-217 (559)
194 cd01672 TMPK Thymidine monopho 96.5 0.0088 1.9E-07 47.5 6.4 27 114-140 1-27 (200)
195 PRK13949 shikimate kinase; Pro 96.5 0.003 6.5E-08 49.3 3.5 26 114-139 2-27 (169)
196 COG0464 SpoVK ATPases of the A 96.5 0.07 1.5E-06 49.1 13.0 30 111-140 274-303 (494)
197 PRK13947 shikimate kinase; Pro 96.5 0.003 6.4E-08 49.2 3.5 26 115-140 3-28 (171)
198 cd02020 CMPK Cytidine monophos 96.4 0.0026 5.7E-08 48.0 3.0 25 115-139 1-25 (147)
199 cd02021 GntK Gluconate kinase 96.4 0.0026 5.6E-08 48.4 2.9 23 115-137 1-23 (150)
200 COG1428 Deoxynucleoside kinase 96.4 0.0029 6.2E-08 50.4 3.2 28 113-140 4-31 (216)
201 PRK14948 DNA polymerase III su 96.4 0.096 2.1E-06 49.4 13.8 156 103-260 27-220 (620)
202 TIGR00064 ftsY signal recognit 96.4 0.035 7.7E-07 46.8 10.0 40 111-152 70-109 (272)
203 KOG0744 AAA+-type ATPase [Post 96.4 0.0025 5.4E-08 53.9 3.0 28 113-140 177-204 (423)
204 COG3640 CooC CO dehydrogenase 96.4 0.0059 1.3E-07 49.4 4.9 27 115-141 2-28 (255)
205 PRK14530 adenylate kinase; Pro 96.4 0.003 6.4E-08 51.3 3.4 25 114-138 4-28 (215)
206 PRK07952 DNA replication prote 96.4 0.014 3.1E-07 48.3 7.4 36 113-150 99-134 (244)
207 KOG0735 AAA+-type ATPase [Post 96.4 0.032 6.9E-07 52.2 10.1 53 113-166 431-485 (952)
208 COG0467 RAD55 RecA-superfamily 96.4 0.0047 1E-07 51.7 4.6 50 111-164 21-70 (260)
209 PRK07993 DNA polymerase III su 96.4 0.1 2.2E-06 45.4 12.9 150 103-259 13-201 (334)
210 cd01393 recA_like RecA is a b 96.4 0.0088 1.9E-07 48.8 6.1 48 113-160 19-70 (226)
211 TIGR03263 guanyl_kin guanylate 96.4 0.0029 6.2E-08 49.8 3.0 24 114-137 2-25 (180)
212 KOG0741 AAA+-type ATPase [Post 96.4 0.093 2E-06 47.7 12.5 147 112-267 537-717 (744)
213 TIGR01243 CDC48 AAA family ATP 96.4 0.099 2.1E-06 50.6 13.9 36 103-138 202-237 (733)
214 cd02028 UMPK_like Uridine mono 96.4 0.0029 6.3E-08 49.8 3.0 24 115-138 1-24 (179)
215 PF07726 AAA_3: ATPase family 96.4 0.0025 5.5E-08 46.8 2.3 28 116-145 2-29 (131)
216 PRK06647 DNA polymerase III su 96.4 0.069 1.5E-06 49.7 12.3 154 103-259 27-217 (563)
217 PRK00889 adenylylsulfate kinas 96.4 0.0041 8.9E-08 48.7 3.8 28 112-139 3-30 (175)
218 PRK10787 DNA-binding ATP-depen 96.4 0.057 1.2E-06 52.3 12.1 28 112-139 348-375 (784)
219 PRK04182 cytidylate kinase; Pr 96.3 0.0089 1.9E-07 46.8 5.7 24 115-138 2-25 (180)
220 cd00071 GMPK Guanosine monopho 96.3 0.0035 7.6E-08 47.1 3.2 24 115-138 1-24 (137)
221 cd01394 radB RadB. The archaea 96.3 0.01 2.2E-07 48.3 6.1 41 113-155 19-59 (218)
222 PRK09361 radB DNA repair and r 96.3 0.0095 2.1E-07 48.7 6.0 45 113-160 23-67 (225)
223 PRK13975 thymidylate kinase; P 96.3 0.0037 8E-08 49.9 3.4 26 114-139 3-28 (196)
224 PRK00300 gmk guanylate kinase; 96.3 0.0036 7.8E-08 50.3 3.3 26 113-138 5-30 (205)
225 COG0194 Gmk Guanylate kinase [ 96.3 0.0061 1.3E-07 47.6 4.3 25 113-137 4-28 (191)
226 PRK14527 adenylate kinase; Pro 96.3 0.0049 1.1E-07 49.1 3.9 28 112-139 5-32 (191)
227 PRK12339 2-phosphoglycerate ki 96.3 0.0043 9.4E-08 49.6 3.6 25 113-137 3-27 (197)
228 COG1126 GlnQ ABC-type polar am 96.3 0.0055 1.2E-07 49.1 4.0 37 112-151 27-63 (240)
229 KOG1969 DNA replication checkp 96.3 0.016 3.4E-07 54.3 7.5 52 111-167 324-375 (877)
230 COG1223 Predicted ATPase (AAA+ 96.3 0.041 9E-07 45.4 9.0 38 103-140 135-178 (368)
231 TIGR01313 therm_gnt_kin carboh 96.3 0.0033 7.1E-08 48.6 2.7 23 116-138 1-23 (163)
232 TIGR02173 cyt_kin_arch cytidyl 96.3 0.01 2.3E-07 46.0 5.6 24 115-138 2-25 (171)
233 PF04665 Pox_A32: Poxvirus A32 96.2 0.0088 1.9E-07 49.1 5.2 37 113-151 13-49 (241)
234 cd00464 SK Shikimate kinase (S 96.2 0.0042 9.1E-08 47.3 3.1 24 116-139 2-25 (154)
235 PRK12608 transcription termina 96.2 0.019 4.2E-07 50.2 7.3 70 103-173 122-194 (380)
236 PRK14737 gmk guanylate kinase; 96.2 0.0049 1.1E-07 48.9 3.4 26 112-137 3-28 (186)
237 PRK03846 adenylylsulfate kinas 96.2 0.008 1.7E-07 48.2 4.7 29 111-139 22-50 (198)
238 TIGR00041 DTMP_kinase thymidyl 96.2 0.015 3.3E-07 46.2 6.3 27 114-140 4-30 (195)
239 TIGR00450 mnmE_trmE_thdF tRNA 96.2 0.017 3.8E-07 52.1 7.2 52 73-137 176-227 (442)
240 KOG2543 Origin recognition com 96.2 0.016 3.4E-07 50.3 6.5 62 103-169 17-81 (438)
241 PRK05057 aroK shikimate kinase 96.2 0.0059 1.3E-07 47.8 3.7 26 113-138 4-29 (172)
242 PRK08533 flagellar accessory p 96.2 0.021 4.6E-07 46.9 7.1 53 113-170 24-76 (230)
243 PF03266 NTPase_1: NTPase; In 96.2 0.0043 9.3E-08 48.3 2.9 24 116-139 2-25 (168)
244 PRK10078 ribose 1,5-bisphospho 96.2 0.0045 9.8E-08 49.0 3.1 25 114-138 3-27 (186)
245 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0056 1.2E-07 53.2 3.8 28 112-139 77-104 (361)
246 PF13245 AAA_19: Part of AAA d 96.2 0.014 3E-07 38.9 4.9 26 112-137 9-35 (76)
247 KOG0733 Nuclear AAA ATPase (VC 96.2 0.088 1.9E-06 48.6 11.4 30 111-140 221-250 (802)
248 PRK12377 putative replication 96.1 0.0057 1.2E-07 50.7 3.6 38 113-152 101-138 (248)
249 PRK10463 hydrogenase nickel in 96.1 0.011 2.4E-07 49.9 5.4 38 103-140 94-131 (290)
250 PF08477 Miro: Miro-like prote 96.1 0.0058 1.3E-07 44.3 3.3 25 115-139 1-25 (119)
251 cd01124 KaiC KaiC is a circadi 96.1 0.008 1.7E-07 47.4 4.3 45 115-163 1-45 (187)
252 PLN02200 adenylate kinase fami 96.1 0.0058 1.2E-07 50.3 3.6 27 112-138 42-68 (234)
253 COG3267 ExeA Type II secretory 96.1 0.17 3.6E-06 41.8 11.8 51 214-264 195-247 (269)
254 KOG1532 GTPase XAB1, interacts 96.1 0.0073 1.6E-07 50.0 4.0 30 112-141 18-47 (366)
255 COG4778 PhnL ABC-type phosphon 96.1 0.0089 1.9E-07 46.1 4.2 34 114-150 38-71 (235)
256 PRK07399 DNA polymerase III su 96.1 0.29 6.3E-06 42.2 14.1 154 103-262 15-221 (314)
257 PRK14738 gmk guanylate kinase; 96.1 0.0063 1.4E-07 49.1 3.7 26 111-136 11-36 (206)
258 cd02027 APSK Adenosine 5'-phos 96.1 0.0051 1.1E-07 46.9 2.9 25 115-139 1-25 (149)
259 COG1763 MobB Molybdopterin-gua 96.1 0.0056 1.2E-07 47.1 3.2 29 113-141 2-30 (161)
260 TIGR02639 ClpA ATP-dependent C 96.1 0.068 1.5E-06 51.6 11.2 37 103-139 193-229 (731)
261 TIGR02236 recomb_radA DNA repa 96.1 0.019 4.1E-07 49.4 6.8 58 112-170 94-155 (310)
262 COG4608 AppF ABC-type oligopep 96.1 0.0077 1.7E-07 49.9 4.1 58 112-171 38-99 (268)
263 KOG0738 AAA+-type ATPase [Post 96.1 0.035 7.6E-07 48.4 8.1 28 113-140 245-272 (491)
264 PRK14531 adenylate kinase; Pro 96.0 0.0065 1.4E-07 48.0 3.4 25 114-138 3-27 (183)
265 cd00820 PEPCK_HprK Phosphoenol 96.0 0.0061 1.3E-07 43.5 2.8 22 113-134 15-36 (107)
266 PRK13946 shikimate kinase; Pro 96.0 0.0072 1.6E-07 47.8 3.6 27 113-139 10-36 (184)
267 PRK04301 radA DNA repair and r 96.0 0.02 4.4E-07 49.4 6.6 58 112-170 101-162 (317)
268 PF13521 AAA_28: AAA domain; P 96.0 0.0059 1.3E-07 47.2 2.9 22 115-136 1-22 (163)
269 PRK11889 flhF flagellar biosyn 96.0 0.024 5.1E-07 50.0 6.8 29 112-140 240-268 (436)
270 COG1120 FepC ABC-type cobalami 96.0 0.0083 1.8E-07 49.7 3.9 28 113-140 28-55 (258)
271 PRK06964 DNA polymerase III su 96.0 0.22 4.8E-06 43.4 12.8 65 187-260 158-223 (342)
272 cd01428 ADK Adenylate kinase ( 96.0 0.0061 1.3E-07 48.4 3.0 23 116-138 2-24 (194)
273 TIGR00176 mobB molybdopterin-g 96.0 0.0061 1.3E-07 46.8 2.8 26 115-140 1-26 (155)
274 COG1116 TauB ABC-type nitrate/ 96.0 0.0065 1.4E-07 49.7 3.1 27 113-139 29-55 (248)
275 COG0529 CysC Adenylylsulfate k 96.0 0.01 2.2E-07 46.0 3.9 33 108-140 18-50 (197)
276 TIGR03574 selen_PSTK L-seryl-t 95.9 0.0058 1.3E-07 50.8 2.9 25 115-139 1-25 (249)
277 TIGR01287 nifH nitrogenase iro 95.9 0.0068 1.5E-07 51.2 3.3 28 114-141 1-28 (275)
278 PRK13948 shikimate kinase; Pro 95.9 0.0081 1.8E-07 47.4 3.5 27 112-138 9-35 (182)
279 PRK14532 adenylate kinase; Pro 95.9 0.0068 1.5E-07 48.0 3.1 24 115-138 2-25 (188)
280 PF13086 AAA_11: AAA domain; P 95.9 0.015 3.2E-07 47.3 5.2 52 115-166 19-75 (236)
281 PRK09825 idnK D-gluconate kina 95.9 0.0081 1.7E-07 47.2 3.4 26 114-139 4-29 (176)
282 PRK09435 membrane ATPase/prote 95.9 0.017 3.7E-07 50.0 5.7 30 111-140 54-83 (332)
283 cd03116 MobB Molybdenum is an 95.9 0.011 2.5E-07 45.5 4.1 27 114-140 2-28 (159)
284 TIGR02640 gas_vesic_GvpN gas v 95.9 0.017 3.6E-07 48.5 5.5 23 115-137 23-45 (262)
285 COG3899 Predicted ATPase [Gene 95.9 0.068 1.5E-06 52.3 10.3 55 211-267 211-265 (849)
286 PRK13695 putative NTPase; Prov 95.9 0.013 2.8E-07 45.9 4.5 25 115-139 2-26 (174)
287 PRK00698 tmk thymidylate kinas 95.9 0.022 4.8E-07 45.6 6.0 27 114-140 4-30 (205)
288 PRK12724 flagellar biosynthesi 95.9 0.028 6.2E-07 50.0 7.0 25 113-137 223-247 (432)
289 KOG0737 AAA+-type ATPase [Post 95.9 0.054 1.2E-06 46.8 8.4 29 112-140 126-154 (386)
290 KOG3347 Predicted nucleotide k 95.9 0.0069 1.5E-07 45.5 2.6 26 113-138 7-32 (176)
291 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.028 6E-07 46.0 6.6 53 113-170 20-72 (229)
292 KOG0728 26S proteasome regulat 95.9 0.4 8.8E-06 39.5 12.9 35 103-137 171-205 (404)
293 PRK06761 hypothetical protein; 95.9 0.019 4.1E-07 48.5 5.6 27 114-140 4-30 (282)
294 COG2019 AdkA Archaeal adenylat 95.9 0.021 4.5E-07 43.9 5.2 48 113-172 4-51 (189)
295 PLN00020 ribulose bisphosphate 95.9 0.0083 1.8E-07 52.2 3.4 30 111-140 146-175 (413)
296 PTZ00088 adenylate kinase 1; P 95.8 0.0088 1.9E-07 49.0 3.5 25 114-138 7-31 (229)
297 PHA02530 pseT polynucleotide k 95.8 0.0082 1.8E-07 51.3 3.4 24 114-137 3-26 (300)
298 TIGR02012 tigrfam_recA protein 95.8 0.015 3.2E-07 50.1 4.9 43 112-156 54-96 (321)
299 PRK01184 hypothetical protein; 95.8 0.0087 1.9E-07 47.2 3.3 22 114-136 2-23 (184)
300 PRK14493 putative bifunctional 95.8 0.0085 1.8E-07 50.5 3.4 28 114-141 2-29 (274)
301 COG0003 ArsA Predicted ATPase 95.8 0.02 4.3E-07 49.3 5.7 49 113-163 2-50 (322)
302 PRK08356 hypothetical protein; 95.8 0.0081 1.8E-07 48.0 3.2 22 113-134 5-26 (195)
303 KOG0743 AAA+-type ATPase [Post 95.8 0.19 4.2E-06 44.7 11.7 143 114-266 236-413 (457)
304 cd00983 recA RecA is a bacter 95.8 0.014 3.1E-07 50.2 4.7 43 113-157 55-97 (325)
305 PF00005 ABC_tran: ABC transpo 95.8 0.0064 1.4E-07 45.4 2.4 34 114-150 12-45 (137)
306 COG0703 AroK Shikimate kinase 95.8 0.0098 2.1E-07 46.1 3.3 27 114-140 3-29 (172)
307 PLN02348 phosphoribulokinase 95.8 0.01 2.2E-07 52.1 3.8 28 111-138 47-74 (395)
308 TIGR00150 HI0065_YjeE ATPase, 95.8 0.012 2.6E-07 43.8 3.6 27 114-140 23-49 (133)
309 PF03193 DUF258: Protein of un 95.8 0.014 3.1E-07 44.9 4.1 32 103-137 28-59 (161)
310 cd03115 SRP The signal recogni 95.8 0.021 4.5E-07 44.5 5.2 26 115-140 2-27 (173)
311 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.032 7E-07 46.0 6.6 54 112-170 20-73 (237)
312 PRK02496 adk adenylate kinase; 95.8 0.01 2.2E-07 46.9 3.4 25 114-138 2-26 (184)
313 PF01695 IstB_IS21: IstB-like 95.8 0.0096 2.1E-07 46.9 3.2 37 113-151 47-83 (178)
314 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.8 0.013 2.9E-07 47.5 4.2 27 113-139 30-56 (218)
315 PF02374 ArsA_ATPase: Anion-tr 95.7 0.018 3.9E-07 49.4 5.1 44 114-159 2-45 (305)
316 PRK04220 2-phosphoglycerate ki 95.7 0.028 6E-07 47.8 6.1 36 103-138 81-117 (301)
317 COG4133 CcmA ABC-type transpor 95.7 0.06 1.3E-06 42.3 7.4 34 114-149 29-62 (209)
318 cd03269 ABC_putative_ATPase Th 95.7 0.014 3.1E-07 47.1 4.2 27 113-139 26-52 (210)
319 PRK08099 bifunctional DNA-bind 95.7 0.01 2.2E-07 52.9 3.6 29 111-139 217-245 (399)
320 PLN02796 D-glycerate 3-kinase 95.7 0.018 3.8E-07 49.9 4.9 29 112-140 99-127 (347)
321 PRK00279 adk adenylate kinase; 95.7 0.011 2.3E-07 48.1 3.4 24 115-138 2-25 (215)
322 cd03222 ABC_RNaseL_inhibitor T 95.7 0.015 3.3E-07 45.7 4.2 27 113-139 25-51 (177)
323 COG1484 DnaC DNA replication p 95.7 0.022 4.9E-07 47.5 5.4 38 112-151 104-141 (254)
324 PRK03731 aroL shikimate kinase 95.7 0.011 2.3E-07 46.1 3.3 26 114-139 3-28 (171)
325 PRK13236 nitrogenase reductase 95.7 0.012 2.6E-07 50.3 3.8 31 110-140 3-33 (296)
326 PRK14528 adenylate kinase; Pro 95.7 0.011 2.4E-07 46.8 3.4 25 114-138 2-26 (186)
327 PF10662 PduV-EutP: Ethanolami 95.7 0.01 2.3E-07 44.6 3.0 24 114-137 2-25 (143)
328 cd01131 PilT Pilus retraction 95.7 0.018 3.8E-07 46.2 4.6 25 114-138 2-26 (198)
329 PRK13230 nitrogenase reductase 95.7 0.011 2.4E-07 50.0 3.5 27 114-140 2-28 (279)
330 PLN02924 thymidylate kinase 95.7 0.031 6.7E-07 45.6 5.9 29 113-141 16-44 (220)
331 PLN02165 adenylate isopentenyl 95.7 0.012 2.5E-07 50.7 3.6 30 109-138 39-68 (334)
332 KOG0727 26S proteasome regulat 95.6 0.017 3.8E-07 47.3 4.3 38 103-140 179-216 (408)
333 smart00072 GuKc Guanylate kina 95.6 0.015 3.2E-07 46.0 3.9 25 113-137 2-26 (184)
334 PF05673 DUF815: Protein of un 95.6 0.26 5.6E-06 40.6 11.0 56 108-165 47-102 (249)
335 PF03029 ATP_bind_1: Conserved 95.6 0.011 2.5E-07 48.7 3.3 23 118-140 1-23 (238)
336 PRK10536 hypothetical protein; 95.6 0.028 6E-07 46.7 5.5 44 103-148 66-109 (262)
337 cd01133 F1-ATPase_beta F1 ATP 95.6 0.034 7.3E-07 46.7 6.0 52 113-166 69-122 (274)
338 TIGR01166 cbiO cobalt transpor 95.6 0.016 3.5E-07 46.0 4.0 27 113-139 18-44 (190)
339 COG4136 ABC-type uncharacteriz 95.6 0.021 4.7E-07 43.1 4.3 42 113-154 28-69 (213)
340 PF01926 MMR_HSR1: 50S ribosom 95.6 0.012 2.5E-07 42.6 2.9 22 115-136 1-22 (116)
341 cd03114 ArgK-like The function 95.6 0.016 3.4E-07 44.2 3.7 26 115-140 1-26 (148)
342 TIGR00960 3a0501s02 Type II (G 95.6 0.016 3.5E-07 47.0 4.0 27 113-139 29-55 (216)
343 PF00142 Fer4_NifH: 4Fe-4S iro 95.6 0.028 6E-07 46.6 5.3 39 114-154 1-39 (273)
344 cd01983 Fer4_NifH The Fer4_Nif 95.6 0.013 2.8E-07 40.4 3.0 25 115-139 1-25 (99)
345 cd03265 ABC_DrrA DrrA is the A 95.6 0.018 3.9E-07 46.8 4.3 27 113-139 26-52 (220)
346 cd03225 ABC_cobalt_CbiO_domain 95.6 0.012 2.5E-07 47.6 3.1 27 113-139 27-53 (211)
347 KOG0652 26S proteasome regulat 95.5 1.2 2.5E-05 37.1 16.1 27 112-138 204-230 (424)
348 cd04139 RalA_RalB RalA/RalB su 95.5 0.012 2.7E-07 44.9 3.1 23 115-137 2-24 (164)
349 COG1100 GTPase SAR1 and relate 95.5 0.011 2.5E-07 47.8 3.1 27 114-140 6-32 (219)
350 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.024 5.2E-07 47.5 5.0 39 113-153 36-74 (259)
351 cd01878 HflX HflX subfamily. 95.5 0.058 1.3E-06 43.2 7.2 27 111-137 39-65 (204)
352 PF02562 PhoH: PhoH-like prote 95.5 0.016 3.6E-07 46.4 3.8 38 112-149 18-55 (205)
353 TIGR01351 adk adenylate kinase 95.5 0.012 2.6E-07 47.5 3.2 23 116-138 2-24 (210)
354 PF08433 KTI12: Chromatin asso 95.5 0.011 2.4E-07 49.7 3.0 26 114-139 2-27 (270)
355 cd03264 ABC_drug_resistance_li 95.5 0.016 3.5E-07 46.8 3.9 25 115-139 27-51 (211)
356 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.019 4.1E-07 47.3 4.3 26 113-138 27-52 (236)
357 PRK15453 phosphoribulokinase; 95.5 0.016 3.4E-07 48.7 3.7 27 112-138 4-30 (290)
358 cd02117 NifH_like This family 95.5 0.014 3E-07 47.3 3.4 27 114-140 1-27 (212)
359 cd02040 NifH NifH gene encodes 95.5 0.014 2.9E-07 49.1 3.5 27 114-140 2-28 (270)
360 PRK13541 cytochrome c biogenes 95.5 0.019 4.2E-07 45.7 4.2 28 113-140 26-53 (195)
361 cd03261 ABC_Org_Solvent_Resist 95.5 0.017 3.8E-07 47.4 4.0 27 113-139 26-52 (235)
362 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.02 4.2E-07 46.6 4.3 27 113-139 30-56 (220)
363 PRK12338 hypothetical protein; 95.5 0.015 3.2E-07 49.9 3.5 26 113-138 4-29 (319)
364 PRK05973 replicative DNA helic 95.5 0.028 6E-07 46.3 5.0 39 113-153 64-102 (237)
365 cd03296 ABC_CysA_sulfate_impor 95.5 0.019 4.2E-07 47.3 4.2 26 113-138 28-53 (239)
366 cd03235 ABC_Metallic_Cations A 95.5 0.018 3.8E-07 46.6 3.9 27 113-139 25-51 (213)
367 PF00406 ADK: Adenylate kinase 95.5 0.012 2.6E-07 44.9 2.7 21 118-138 1-21 (151)
368 KOG0739 AAA+-type ATPase [Post 95.5 0.074 1.6E-06 44.9 7.4 26 113-138 166-191 (439)
369 PRK13540 cytochrome c biogenes 95.4 0.02 4.4E-07 45.8 4.2 35 113-150 27-61 (200)
370 smart00173 RAS Ras subfamily o 95.4 0.014 3.1E-07 44.8 3.2 23 115-137 2-24 (164)
371 cd03238 ABC_UvrA The excision 95.4 0.013 2.9E-07 46.0 3.0 23 113-135 21-43 (176)
372 cd04155 Arl3 Arl3 subfamily. 95.4 0.019 4E-07 44.6 3.8 25 112-136 13-37 (173)
373 COG0541 Ffh Signal recognition 95.4 0.38 8.3E-06 42.7 12.1 71 103-174 81-160 (451)
374 PRK06835 DNA replication prote 95.4 0.017 3.7E-07 50.0 3.9 36 114-151 184-219 (329)
375 TIGR01618 phage_P_loop phage n 95.4 0.011 2.5E-07 47.9 2.6 22 113-134 12-33 (220)
376 TIGR02673 FtsE cell division A 95.4 0.02 4.4E-07 46.3 4.1 27 113-139 28-54 (214)
377 cd03292 ABC_FtsE_transporter F 95.4 0.02 4.4E-07 46.3 4.1 27 113-139 27-53 (214)
378 COG1127 Ttg2A ABC-type transpo 95.4 0.035 7.6E-07 45.3 5.3 40 113-155 34-73 (263)
379 PRK06067 flagellar accessory p 95.4 0.055 1.2E-06 44.5 6.7 53 112-169 24-76 (234)
380 cd03229 ABC_Class3 This class 95.4 0.015 3.2E-07 45.7 3.1 26 113-138 26-51 (178)
381 PRK13973 thymidylate kinase; P 95.4 0.052 1.1E-06 44.0 6.5 27 114-140 4-30 (213)
382 PRK11629 lolD lipoprotein tran 95.4 0.022 4.8E-07 46.8 4.3 27 113-139 35-61 (233)
383 PLN02318 phosphoribulokinase/u 95.4 0.015 3.3E-07 53.7 3.5 28 110-137 62-89 (656)
384 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.023 4.9E-07 43.0 4.0 27 113-139 26-52 (144)
385 PRK10733 hflB ATP-dependent me 95.4 0.26 5.7E-06 46.9 12.0 27 113-139 185-211 (644)
386 PRK09354 recA recombinase A; P 95.4 0.027 5.9E-07 48.9 5.0 44 112-157 59-102 (349)
387 PRK06851 hypothetical protein; 95.4 0.029 6.2E-07 49.2 5.1 44 110-154 27-70 (367)
388 PRK13768 GTPase; Provisional 95.4 0.016 3.5E-07 48.3 3.5 27 114-140 3-29 (253)
389 TIGR00750 lao LAO/AO transport 95.4 0.024 5.3E-07 48.5 4.6 30 111-140 32-61 (300)
390 PRK13538 cytochrome c biogenes 95.4 0.022 4.8E-07 45.8 4.2 27 113-139 27-53 (204)
391 cd02022 DPCK Dephospho-coenzym 95.4 0.014 3E-07 46.0 2.9 21 115-135 1-21 (179)
392 PRK11124 artP arginine transpo 95.4 0.022 4.8E-07 47.0 4.3 27 113-139 28-54 (242)
393 TIGR02211 LolD_lipo_ex lipopro 95.4 0.022 4.8E-07 46.3 4.2 27 113-139 31-57 (221)
394 cd04119 RJL RJL (RabJ-Like) su 95.4 0.014 3E-07 44.8 2.9 23 115-137 2-24 (168)
395 TIGR00390 hslU ATP-dependent p 95.4 0.038 8.3E-07 49.1 5.8 28 113-140 47-74 (441)
396 PF13177 DNA_pol3_delta2: DNA 95.4 0.2 4.4E-06 38.7 9.3 97 104-202 9-143 (162)
397 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.021 4.6E-07 47.4 4.1 27 113-139 25-51 (246)
398 PRK05291 trmE tRNA modificatio 95.4 0.062 1.3E-06 48.8 7.4 53 73-137 187-239 (449)
399 TIGR00017 cmk cytidylate kinas 95.3 0.018 3.8E-07 46.9 3.5 25 114-138 3-27 (217)
400 COG0237 CoaE Dephospho-CoA kin 95.3 0.016 3.5E-07 46.4 3.2 23 113-135 2-24 (201)
401 TIGR00101 ureG urease accessor 95.3 0.019 4.1E-07 46.1 3.6 26 114-139 2-27 (199)
402 COG4619 ABC-type uncharacteriz 95.3 0.025 5.4E-07 43.7 4.0 49 114-164 30-79 (223)
403 PRK04328 hypothetical protein; 95.3 0.036 7.8E-07 46.1 5.4 54 113-171 23-76 (249)
404 PRK07933 thymidylate kinase; V 95.3 0.032 7E-07 45.2 5.0 28 114-141 1-28 (213)
405 cd03246 ABCC_Protease_Secretio 95.3 0.027 5.9E-07 44.0 4.5 27 113-139 28-54 (173)
406 COG4088 Predicted nucleotide k 95.3 0.014 3E-07 46.4 2.7 27 114-140 2-28 (261)
407 COG1136 SalX ABC-type antimicr 95.3 0.016 3.4E-07 47.1 3.1 27 113-139 31-57 (226)
408 PRK15455 PrkA family serine pr 95.3 0.02 4.3E-07 52.8 4.0 30 110-139 100-129 (644)
409 TIGR03608 L_ocin_972_ABC putat 95.3 0.024 5.1E-07 45.6 4.2 26 114-139 25-50 (206)
410 PRK10584 putative ABC transpor 95.3 0.023 5.1E-07 46.4 4.2 27 113-139 36-62 (228)
411 TIGR01184 ntrCD nitrate transp 95.3 0.024 5.1E-07 46.6 4.2 26 114-139 12-37 (230)
412 cd03301 ABC_MalK_N The N-termi 95.3 0.025 5.4E-07 45.7 4.3 27 113-139 26-52 (213)
413 PF08423 Rad51: Rad51; InterP 95.3 0.05 1.1E-06 45.4 6.2 57 113-170 38-98 (256)
414 cd03297 ABC_ModC_molybdenum_tr 95.3 0.025 5.5E-07 45.8 4.3 28 111-139 22-49 (214)
415 cd03263 ABC_subfamily_A The AB 95.3 0.016 3.4E-07 47.2 3.1 27 113-139 28-54 (220)
416 cd03256 ABC_PhnC_transporter A 95.3 0.015 3.4E-07 47.9 3.1 27 113-139 27-53 (241)
417 PRK11248 tauB taurine transpor 95.3 0.023 5.1E-07 47.4 4.2 27 113-139 27-53 (255)
418 cd03218 ABC_YhbG The ABC trans 95.3 0.023 4.9E-07 46.6 4.1 26 113-138 26-51 (232)
419 TIGR00455 apsK adenylylsulfate 95.3 0.02 4.4E-07 45.2 3.7 28 112-139 17-44 (184)
420 PF07724 AAA_2: AAA domain (Cd 95.3 0.039 8.4E-07 43.1 5.2 42 113-156 3-45 (171)
421 cd04138 H_N_K_Ras_like H-Ras/N 95.3 0.016 3.4E-07 44.2 2.9 23 115-137 3-25 (162)
422 cd03226 ABC_cobalt_CbiO_domain 95.3 0.024 5.1E-07 45.6 4.1 27 113-139 26-52 (205)
423 cd01862 Rab7 Rab7 subfamily. 95.3 0.016 3.4E-07 44.8 2.9 23 115-137 2-24 (172)
424 cd04163 Era Era subfamily. Er 95.3 0.015 3.4E-07 44.2 2.9 25 113-137 3-27 (168)
425 cd03259 ABC_Carb_Solutes_like 95.3 0.016 3.5E-07 46.8 3.1 27 113-139 26-52 (213)
426 TIGR02315 ABC_phnC phosphonate 95.3 0.016 3.4E-07 47.9 3.1 27 113-139 28-54 (243)
427 cd03224 ABC_TM1139_LivF_branch 95.3 0.022 4.9E-07 46.3 4.0 27 113-139 26-52 (222)
428 TIGR02238 recomb_DMC1 meiotic 95.3 0.045 9.8E-07 47.1 5.9 59 112-171 95-157 (313)
429 PRK10247 putative ABC transpor 95.3 0.026 5.6E-07 46.2 4.3 26 113-138 33-58 (225)
430 COG0468 RecA RecA/RadA recombi 95.3 0.049 1.1E-06 45.9 6.0 50 112-163 59-108 (279)
431 COG1419 FlhF Flagellar GTP-bin 95.3 1.1 2.3E-05 39.8 14.2 85 112-198 202-289 (407)
432 cd03260 ABC_PstB_phosphate_tra 95.2 0.017 3.7E-07 47.2 3.2 25 113-137 26-50 (227)
433 COG3638 ABC-type phosphate/pho 95.2 0.045 9.6E-07 44.6 5.4 28 113-140 30-57 (258)
434 PF13604 AAA_30: AAA domain; P 95.2 0.041 8.9E-07 44.0 5.3 31 110-140 15-45 (196)
435 TIGR00763 lon ATP-dependent pr 95.2 0.064 1.4E-06 52.1 7.5 27 113-139 347-373 (775)
436 cd03233 ABC_PDR_domain1 The pl 95.2 0.027 5.9E-07 45.2 4.2 26 113-138 33-58 (202)
437 PLN03187 meiotic recombination 95.2 0.054 1.2E-06 47.2 6.3 59 112-171 125-187 (344)
438 COG2884 FtsE Predicted ATPase 95.2 0.029 6.3E-07 44.1 4.1 34 113-149 28-61 (223)
439 KOG0726 26S proteasome regulat 95.2 0.11 2.3E-06 43.8 7.6 28 112-139 218-245 (440)
440 PRK10908 cell division protein 95.2 0.027 5.9E-07 45.9 4.3 27 113-139 28-54 (222)
441 cd02026 PRK Phosphoribulokinas 95.2 0.016 3.4E-07 48.9 2.9 25 115-139 1-25 (273)
442 cd01673 dNK Deoxyribonucleosid 95.2 0.017 3.7E-07 45.9 3.0 23 115-137 1-23 (193)
443 cd03230 ABC_DR_subfamily_A Thi 95.2 0.029 6.2E-07 43.8 4.2 26 113-138 26-51 (173)
444 TIGR01189 ccmA heme ABC export 95.2 0.027 5.8E-07 45.0 4.1 27 113-139 26-52 (198)
445 TIGR01277 thiQ thiamine ABC tr 95.2 0.027 5.8E-07 45.6 4.2 27 113-139 24-50 (213)
446 cd03219 ABC_Mj1267_LivG_branch 95.2 0.024 5.1E-07 46.7 3.9 26 113-138 26-51 (236)
447 cd04137 RheB Rheb (Ras Homolog 95.2 0.019 4E-07 44.9 3.2 24 114-137 2-25 (180)
448 PRK09493 glnQ glutamine ABC tr 95.2 0.027 6E-07 46.4 4.3 26 113-138 27-52 (240)
449 PLN03046 D-glycerate 3-kinase; 95.2 0.037 7.9E-07 49.1 5.1 29 112-140 211-239 (460)
450 cd04159 Arl10_like Arl10-like 95.2 0.015 3.2E-07 44.0 2.4 21 116-136 2-22 (159)
451 COG0125 Tmk Thymidylate kinase 95.2 0.063 1.4E-06 43.3 6.1 29 113-141 3-31 (208)
452 TIGR00972 3a0107s01c2 phosphat 95.2 0.032 7E-07 46.3 4.7 26 113-138 27-52 (247)
453 PRK11247 ssuB aliphatic sulfon 95.2 0.028 6.1E-07 47.0 4.3 27 113-139 38-64 (257)
454 TIGR02528 EutP ethanolamine ut 95.2 0.016 3.5E-07 43.3 2.6 23 115-137 2-24 (142)
455 PRK14250 phosphate ABC transpo 95.2 0.027 5.7E-07 46.6 4.1 26 113-138 29-54 (241)
456 PF06745 KaiC: KaiC; InterPro 95.2 0.036 7.7E-07 45.3 4.8 47 113-164 19-67 (226)
457 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.2 0.026 5.6E-07 44.0 3.9 33 104-136 6-38 (174)
458 cd03295 ABC_OpuCA_Osmoprotecti 95.2 0.027 5.8E-07 46.6 4.2 26 113-138 27-52 (242)
459 PRK13232 nifH nitrogenase redu 95.2 0.02 4.2E-07 48.4 3.4 27 114-140 2-28 (273)
460 cd03258 ABC_MetN_methionine_tr 95.2 0.028 6E-07 46.2 4.2 27 113-139 31-57 (233)
461 PRK13976 thymidylate kinase; P 95.2 0.06 1.3E-06 43.5 6.0 26 115-140 2-27 (209)
462 TIGR02239 recomb_RAD51 DNA rep 95.2 0.057 1.2E-06 46.6 6.2 58 112-170 95-156 (316)
463 PRK13539 cytochrome c biogenes 95.1 0.029 6.2E-07 45.2 4.2 28 112-139 27-54 (207)
464 TIGR02324 CP_lyasePhnL phospho 95.1 0.028 6.1E-07 45.8 4.2 27 113-139 34-60 (224)
465 cd03262 ABC_HisP_GlnQ_permease 95.1 0.029 6.2E-07 45.3 4.2 27 113-139 26-52 (213)
466 cd03266 ABC_NatA_sodium_export 95.1 0.027 5.9E-07 45.7 4.1 27 113-139 31-57 (218)
467 cd03257 ABC_NikE_OppD_transpor 95.1 0.027 6E-07 46.0 4.1 27 113-139 31-57 (228)
468 COG0410 LivF ABC-type branched 95.1 0.029 6.4E-07 45.4 4.0 28 113-140 29-56 (237)
469 PTZ00035 Rad51 protein; Provis 95.1 0.09 2E-06 45.8 7.4 58 112-170 117-178 (337)
470 cd02032 Bchl_like This family 95.1 0.021 4.5E-07 48.0 3.4 27 114-140 1-27 (267)
471 smart00178 SAR Sar1p-like memb 95.1 0.029 6.3E-07 44.2 4.1 34 103-136 6-40 (184)
472 cd03268 ABC_BcrA_bacitracin_re 95.1 0.031 6.6E-07 45.0 4.3 27 113-139 26-52 (208)
473 TIGR01281 DPOR_bchL light-inde 95.1 0.021 4.5E-07 48.0 3.4 26 115-140 2-27 (268)
474 PRK15177 Vi polysaccharide exp 95.1 0.019 4.2E-07 46.5 3.1 27 113-139 13-39 (213)
475 cd04113 Rab4 Rab4 subfamily. 95.1 0.019 4E-07 44.0 2.9 23 115-137 2-24 (161)
476 cd03223 ABCD_peroxisomal_ALDP 95.1 0.032 6.9E-07 43.3 4.2 27 113-139 27-53 (166)
477 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.03 6.5E-07 45.8 4.2 27 113-139 48-74 (224)
478 smart00175 RAB Rab subfamily o 95.1 0.018 3.9E-07 44.1 2.7 23 115-137 2-24 (164)
479 PRK09984 phosphonate/organopho 95.1 0.034 7.3E-07 46.6 4.6 27 113-139 30-56 (262)
480 TIGR00231 small_GTP small GTP- 95.1 0.019 4.2E-07 43.1 2.9 25 114-138 2-26 (161)
481 cd03214 ABC_Iron-Siderophores_ 95.1 0.033 7.1E-07 43.8 4.2 27 113-139 25-51 (180)
482 PRK10619 histidine/lysine/argi 95.1 0.031 6.7E-07 46.7 4.3 27 113-139 31-57 (257)
483 KOG2227 Pre-initiation complex 95.1 0.61 1.3E-05 41.9 12.2 61 108-168 170-230 (529)
484 cd03247 ABCC_cytochrome_bd The 95.1 0.034 7.4E-07 43.6 4.3 27 113-139 28-54 (178)
485 cd02034 CooC The accessory pro 95.1 0.025 5.4E-07 41.1 3.2 25 116-140 2-26 (116)
486 KOG0991 Replication factor C, 95.1 0.03 6.4E-07 45.5 3.9 55 109-163 44-98 (333)
487 cd04124 RabL2 RabL2 subfamily. 95.1 0.02 4.3E-07 44.0 2.9 23 115-137 2-24 (161)
488 cd01864 Rab19 Rab19 subfamily. 95.1 0.023 5.1E-07 43.7 3.3 24 113-136 3-26 (165)
489 cd03267 ABC_NatA_like Similar 95.1 0.031 6.7E-07 46.0 4.2 27 113-139 47-73 (236)
490 PRK05800 cobU adenosylcobinami 95.0 0.091 2E-06 41.0 6.6 24 114-137 2-25 (170)
491 PRK13531 regulatory ATPase Rav 95.0 0.044 9.5E-07 49.6 5.3 30 115-144 41-70 (498)
492 cd03234 ABCG_White The White s 95.0 0.037 8.1E-07 45.2 4.6 26 113-138 33-58 (226)
493 COG1084 Predicted GTPase [Gene 95.0 1.3 2.9E-05 37.9 13.7 27 111-137 166-192 (346)
494 PF03215 Rad17: Rad17 cell cyc 95.0 0.031 6.8E-07 51.4 4.5 33 113-149 45-77 (519)
495 cd03215 ABC_Carb_Monos_II This 95.0 0.031 6.7E-07 44.0 4.0 27 113-139 26-52 (182)
496 PRK08699 DNA polymerase III su 95.0 0.15 3.4E-06 44.1 8.5 117 113-231 21-184 (325)
497 PF13479 AAA_24: AAA domain 95.0 0.015 3.3E-07 47.1 2.3 20 114-133 4-23 (213)
498 cd04136 Rap_like Rap-like subf 95.0 0.023 4.9E-07 43.5 3.1 23 115-137 3-25 (163)
499 cd00876 Ras Ras family. The R 95.0 0.02 4.4E-07 43.5 2.8 21 116-136 2-22 (160)
500 COG3842 PotA ABC-type spermidi 95.0 0.02 4.4E-07 49.7 3.1 27 114-140 32-58 (352)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-37 Score=290.68 Aligned_cols=238 Identities=31% Similarity=0.517 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhc-----------------cccc
Q 041612 38 NLKSEVDNLKSERVRTEHQVDEAKRKGEEIEENVENWLARANNVIEAADNFTKDEATTN-----------------KRCF 100 (276)
Q Consensus 38 ~l~~~l~~l~~~l~~i~~~~~~a~~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~-----------------~~~~ 100 (276)
..++.+..|++.+..++.+++|+++++.. ...+..|.+.+++++|+++++++.+.... .-|+
T Consensus 25 ~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~ 103 (889)
T KOG4658|consen 25 GKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCL 103 (889)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhh
Confidence 44556777888888888888888888765 77888899999999999999887543211 0011
Q ss_pred hH---------------------------------------------------------------HHHHhhcCCCccEEE
Q 041612 101 KG---------------------------------------------------------------NILSALEDPDVNMLG 117 (276)
Q Consensus 101 ~~---------------------------------------------------------------~l~~~L~~~~~~vi~ 117 (276)
.+ ++.+.|.+++..+++
T Consensus 104 ~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~ 183 (889)
T KOG4658|consen 104 CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVG 183 (889)
T ss_pred hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEE
Confidence 11 677777777789999
Q ss_pred EEcCCCCcHHHHHHHHHHhcc-cCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCcccc---cchhhhhhccc-------
Q 041612 118 IYGMGGIGKTMLAEEIARKVK-SDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFHEE---SESGRANSLFT------- 186 (276)
Q Consensus 118 I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~l~~------- 186 (276)
|+||||+||||||++++|+.. ..++|+.++||++|+.++...++++|+..++...... ........+.+
T Consensus 184 i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krf 263 (889)
T KOG4658|consen 184 IYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRF 263 (889)
T ss_pred EECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCce
Confidence 999999999999999999998 8899999999999999999999999999888743322 11222222222
Q ss_pred ---------------------cCCCCcEEEEEeccccccccCCCCCCceeCCCCCHHHHHHHHHHhhCC--CCCChhHHH
Q 041612 187 ---------------------HGHKGCKVLLTARSQDVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGD--YIEDSEFQS 243 (276)
Q Consensus 187 ---------------------~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~ 243 (276)
....||+|++|||+..|+...++....+++++|.++|||.||.+.+|. ....+.+.+
T Consensus 264 llvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~ 343 (889)
T KOG4658|consen 264 LLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEE 343 (889)
T ss_pred EEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHH
Confidence 345679999999999998776888889999999999999999999983 334455899
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHh-CCCccccCC
Q 041612 244 IARDVAKECAGLPVSIVTIARALR-NKRLFEWKD 276 (276)
Q Consensus 244 ~~~~i~~~c~G~PLai~~i~~~L~-~~~~~~W~~ 276 (276)
++++|+++|+|+|||+.+||+.|+ +.+++||++
T Consensus 344 lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~ 377 (889)
T KOG4658|consen 344 LAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRR 377 (889)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999999999999999 999999973
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=5.6e-30 Score=217.82 Aligned_cols=173 Identities=32% Similarity=0.511 Sum_probs=132.1
Q ss_pred HHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCcccc----c
Q 041612 103 NILSALED--PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFHEE----S 176 (276)
Q Consensus 103 ~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~----~ 176 (276)
+|.+.|.. ++.++|+|+|+||+||||||..++++...+.+|+.++|++++...+...++..|+.+++...... .
T Consensus 7 ~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (287)
T PF00931_consen 7 KLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKD 86 (287)
T ss_dssp HHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSS
T ss_pred HHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66677766 78999999999999999999999999666777999999999999999999999999998773321 1
Q ss_pred chhhhhhccc----------------------------cCCCCcEEEEEeccccccccCCCCCCceeCCCCCHHHHHHHH
Q 041612 177 ESGRANSLFT----------------------------HGHKGCKVLLTARSQDVLSGKMDSRPNFSIGVLNEEEAWSLF 228 (276)
Q Consensus 177 ~~~~~~~l~~----------------------------~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf 228 (276)
.......+.. ....||+||||||+..++.........+++++|++++|++||
T Consensus 87 ~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~ 166 (287)
T PF00931_consen 87 IEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELF 166 (287)
T ss_dssp HHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHH
T ss_pred cccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111111 345689999999999987543333678999999999999999
Q ss_pred HHhhCCC--CCChhHHHHHHHHHHHcCCCcHHHHHHHHHHh-CCCccccC
Q 041612 229 KKMAGDY--IEDSEFQSIARDVAKECAGLPVSIVTIARALR-NKRLFEWK 275 (276)
Q Consensus 229 ~~~~~~~--~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~-~~~~~~W~ 275 (276)
.+.++.. ..++.+.+.+++|+++|+|+|||++++|++|+ +.++.+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~ 216 (287)
T PF00931_consen 167 KKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWE 216 (287)
T ss_dssp HHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999833 24455667899999999999999999999997 44788886
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.4e-25 Score=221.54 Aligned_cols=234 Identities=19% Similarity=0.337 Sum_probs=151.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH------------------HHHHHHhhhhhh
Q 041612 30 SKYTSNLQNLKSEVDNLKSERVRTEHQVDEAKRKGEEIEENVENWLARAN------------------NVIEAADNFTKD 91 (276)
Q Consensus 30 ~~~~~~~~~l~~~l~~l~~~l~~i~~~~~~a~~~~~~~~~~~~~wl~~l~------------------~~~~~~ed~ld~ 91 (276)
.-|..+..+++.+...+...+..... . ...+.++.|...+. -+.+.++|+++.
T Consensus 104 vfy~v~p~~v~~~~g~f~~~f~~~~~-------~--~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~ 174 (1153)
T PLN03210 104 VFYGLDPSHVRKQTGDFGEAFEKTCQ-------N--KTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGK 174 (1153)
T ss_pred EEecccHHHHhhccchHHHHHHHHhc-------c--cchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHh
Confidence 55555666666666666555443211 0 11233445554444 444455555554
Q ss_pred hhhhcc---ccchH------HHHHhh--cCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe---cCc---
Q 041612 92 EATTNK---RCFKG------NILSAL--EDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV---SQN--- 154 (276)
Q Consensus 92 ~~~~~~---~~~~~------~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~--- 154 (276)
...... ..+.| ++..+| ..++.++|+|+||||+||||||+.+|+....+ |+..+|+.. +..
T Consensus 175 l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 175 LNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEI 252 (1153)
T ss_pred hccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhh
Confidence 432221 22222 555554 34678999999999999999999999988765 998888742 111
Q ss_pred --------CC-HHHHHHHHHHHh----CCCc-------------------ccccchhhhhhcc---ccCCCCcEEEEEec
Q 041612 155 --------QD-IRKIQEEIGDKL----GLKF-------------------HEESESGRANSLF---THGHKGCKVLLTAR 199 (276)
Q Consensus 155 --------~~-~~~l~~~i~~~l----~~~~-------------------~~~~~~~~~~~l~---~~~~~gs~IivTTR 199 (276)
++ ...+...++..+ +... ++.+....+..+. ...++||+||||||
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 01 122333333322 1111 1111111122221 14578999999999
Q ss_pred cccccccCCCCCCceeCCCCCHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCccccC
Q 041612 200 SQDVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAG-DYIEDSEFQSIARDVAKECAGLPVSIVTIARALRNKRLFEWK 275 (276)
Q Consensus 200 ~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~~~~~~~W~ 275 (276)
+..++.. .+..+.|+++.|++++||+||+++|| ...+++++.+++++|+++|+|+|||++++|++|+.++..+|+
T Consensus 333 d~~vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~ 408 (1153)
T PLN03210 333 DKHFLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408 (1153)
T ss_pred cHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH
Confidence 9999753 45668999999999999999999998 344556788999999999999999999999999988889996
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=2.5e-08 Score=83.97 Aligned_cols=154 Identities=15% Similarity=0.203 Sum_probs=93.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCcccccchhhhhhcc----
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFHEESESGRANSLF---- 185 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~---- 185 (276)
..+...+.|+|++|+|||||++.+++...... + ..+|+ .....+..+++..|+..++.+............+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998876431 1 22333 23344667788888888876543221111111110
Q ss_pred ----c------------------------------cCCCCcEEEEEeccccc--ccc-C-----CCCCCceeCCCCCHHH
Q 041612 186 ----T------------------------------HGHKGCKVLLTARSQDV--LSG-K-----MDSRPNFSIGVLNEEE 223 (276)
Q Consensus 186 ----~------------------------------~~~~gs~IivTTR~~~v--a~~-~-----~~~~~~~~l~~L~~~e 223 (276)
. .......|++|....-. ... . ......+++++|+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 0 11122244555433211 000 0 0112357899999999
Q ss_pred HHHHHHHhhCC--CC-CChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 041612 224 AWSLFKKMAGD--YI-EDSEFQSIARDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 224 a~~Lf~~~~~~--~~-~~~~~~~~~~~i~~~c~G~PLai~~i~~~L 266 (276)
...++...+.. .. ...-..+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877641 11 112234678899999999999999999887
No 5
>PF05729 NACHT: NACHT domain
Probab=98.87 E-value=2e-08 Score=77.91 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCeEEEEEecCcCCHH---HHHHHHHHHhCCCc--------------
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKL----FDQVVFVEVSQNQDIR---KIQEEIGDKLGLKF-------------- 172 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~l~~~i~~~l~~~~-------------- 172 (276)
|++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...|..+.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999999988876643 3456777666543322 23333322221110
Q ss_pred ----------ccccc--h--------hhhhhccc-cCCCCcEEEEEeccccc--cccCCCCCCceeCCCCCHHHHHHHHH
Q 041612 173 ----------HEESE--S--------GRANSLFT-HGHKGCKVLLTARSQDV--LSGKMDSRPNFSIGVLNEEEAWSLFK 229 (276)
Q Consensus 173 ----------~~~~~--~--------~~~~~l~~-~~~~gs~IivTTR~~~v--a~~~~~~~~~~~l~~L~~~ea~~Lf~ 229 (276)
++... . .....+.. ...+++++|||+|.... ..........+.+++|++++..++++
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 00000 0 00111111 34678999999998766 22233444689999999999999998
Q ss_pred Hhh
Q 041612 230 KMA 232 (276)
Q Consensus 230 ~~~ 232 (276)
+..
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 764
No 6
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=2.8e-07 Score=90.46 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=99.3
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc-CCHHHHHHHHHHHhCCCcccc-----
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN-QDIRKIQEEIGDKLGLKFHEE----- 175 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~----- 175 (276)
.|...|.. ...+++.|+|++|.||||++..+..+ ++.++|+++... .++..+...++..++......
T Consensus 21 rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~ 94 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSE 94 (903)
T ss_pred HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhh
Confidence 66666654 35789999999999999999998742 236899999744 455666666655553111000
Q ss_pred --------cc-hhhh----hh-----------------------------ccccCCCCcEEEEEeccccccc--cCCCCC
Q 041612 176 --------SE-SGRA----NS-----------------------------LFTHGHKGCKVLLTARSQDVLS--GKMDSR 211 (276)
Q Consensus 176 --------~~-~~~~----~~-----------------------------l~~~~~~gs~IivTTR~~~va~--~~~~~~ 211 (276)
.. .... .. +.....++.++|||||...-.. ......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~ 174 (903)
T PRK04841 95 ALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRD 174 (903)
T ss_pred hhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcC
Confidence 00 0000 00 0003466788999999853211 001112
Q ss_pred CceeCC----CCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 212 PNFSIG----VLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 212 ~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
....+. +|+.+|+..||....+.... .+....|.+.|+|.|+++..++..++
T Consensus 175 ~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 175 QLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred cceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345555 89999999999887653222 23467899999999999999987775
No 7
>PRK06893 DNA replication initiation factor; Validated
Probab=98.52 E-value=1e-06 Score=72.39 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=81.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC----cccc---cchhh----h
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK----FHEE---SESGR----A 181 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~----~~~~---~~~~~----~ 181 (276)
.+.+.++|++|+|||+|++.+++....+ ...+.|+++..... ....+.+.+... .++. ..... .
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l 113 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---FSPAVLENLEQQDLVCLDDLQAVIGNEEWELAI 113 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---hhHHHHhhcccCCEEEEeChhhhcCChHHHHHH
Confidence 3578999999999999999999987554 33456776642211 111222222110 0000 00011 1
Q ss_pred hhccc-cCCCCcEEEEEeccc----------cccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 041612 182 NSLFT-HGHKGCKVLLTARSQ----------DVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAK 250 (276)
Q Consensus 182 ~~l~~-~~~~gs~IivTTR~~----------~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~ 250 (276)
-.+.. ....|+.+|++|.+. .+.. .+.....++++++++++.++++.+.+..... .--+++..-|++
T Consensus 114 ~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l~~~v~~~L~~ 191 (229)
T PRK06893 114 FDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-ELSDEVANFLLK 191 (229)
T ss_pred HHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Confidence 11111 223456666555443 2222 1334457899999999999999988862221 122356778888
Q ss_pred HcCCCcHHHHHHH
Q 041612 251 ECAGLPVSIVTIA 263 (276)
Q Consensus 251 ~c~G~PLai~~i~ 263 (276)
++.|-.-.+..+-
T Consensus 192 ~~~~d~r~l~~~l 204 (229)
T PRK06893 192 RLDRDMHTLFDAL 204 (229)
T ss_pred hccCCHHHHHHHH
Confidence 8887665554443
No 8
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.48 E-value=1.3e-06 Score=75.15 Aligned_cols=123 Identities=23% Similarity=0.308 Sum_probs=78.0
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC----HHHHHHHHHHHhCC--------
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD----IRKIQEEIGDKLGL-------- 170 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~----~~~l~~~i~~~l~~-------- 170 (276)
-|...+....+.-.-+||++|+||||||+.+....... | ..++...+ +..++..--+..+.
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLfl 110 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREIIEEARKNRLLGRRTILFL 110 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 45555667788888999999999999999999866544 3 33333332 33333222222221
Q ss_pred CcccccchhhhhhccccCCCCcEEEE--Eecccccc--ccCCCCCCceeCCCCCHHHHHHHHHHhh
Q 041612 171 KFHEESESGRANSLFTHGHKGCKVLL--TARSQDVL--SGKMDSRPNFSIGVLNEEEAWSLFKKMA 232 (276)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~gs~Iiv--TTR~~~va--~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 232 (276)
+....-+..+.+.+...-..|.-|+| ||.|+... ........++.+++|+.++..+++.+-+
T Consensus 111 DEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 111 DEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred ehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 11112333444455557778887777 77777642 2234455689999999999999998843
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.43 E-value=1.2e-06 Score=71.66 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=31.0
Q ss_pred CCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 211 RPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 211 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
...+.+++|+.+++++++...+.....-+.-.+..++|...++|+|..|..
T Consensus 183 ~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 183 FSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp --EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred cceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 345999999999999999987643211012244568999999999998764
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.42 E-value=1.4e-05 Score=71.05 Aligned_cols=156 Identities=20% Similarity=0.164 Sum_probs=87.5
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC-cccc--cc---------
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK-FHEE--SE--------- 177 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~-~~~~--~~--------- 177 (276)
......+.|+|++|+|||++++.++++.......-..++++.....+...++..|+.++... .+.. ..
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 131 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAE 131 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 34456788999999999999999999886553223456666666666677777777766531 1000 00
Q ss_pred ------------hhhhhhcc------------c--cCCCCcE--EEEEeccccccccC------CCCCCceeCCCCCHHH
Q 041612 178 ------------SGRANSLF------------T--HGHKGCK--VLLTARSQDVLSGK------MDSRPNFSIGVLNEEE 223 (276)
Q Consensus 178 ------------~~~~~~l~------------~--~~~~gs~--IivTTR~~~va~~~------~~~~~~~~l~~L~~~e 223 (276)
.+..+.+. . ...++++ +|.++....+.... .-....+.+++++.++
T Consensus 132 ~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e 211 (394)
T PRK00411 132 YLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADE 211 (394)
T ss_pred HHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHH
Confidence 00011111 0 1122334 56666554432210 0012357899999999
Q ss_pred HHHHHHHhhC----CCCCChhH-HHHHHHHHHHcCCCcHHHHHHHHH
Q 041612 224 AWSLFKKMAG----DYIEDSEF-QSIARDVAKECAGLPVSIVTIARA 265 (276)
Q Consensus 224 a~~Lf~~~~~----~~~~~~~~-~~~~~~i~~~c~G~PLai~~i~~~ 265 (276)
..+++...+. ....+++. ..+++......|..+.|+.++-..
T Consensus 212 ~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 212 IFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred HHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999987763 11223332 222332323356678888776543
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.41 E-value=6e-06 Score=70.87 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=80.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCc----c--cccchhhhhhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKF----H--EESESGRANSLF 185 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----~--~~~~~~~~~~l~ 185 (276)
.+..+.++|++|+|||+||+.+.+..... + .....+.......+ ...+..++... + +.-.......+.
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAILTNLEEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHHHhcccCCEEEEehHhhhCHHHHHHhh
Confidence 35568899999999999999999887543 2 11221111122222 12222222111 0 000000111111
Q ss_pred c----------------------cCCCCcEEEEEeccccccccC-CCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHH
Q 041612 186 T----------------------HGHKGCKVLLTARSQDVLSGK-MDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQ 242 (276)
Q Consensus 186 ~----------------------~~~~gs~IivTTR~~~va~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 242 (276)
. ..++.+-|..||+...+.... ......+.+++++.++..+++.+.+..... .-..
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~ 181 (305)
T TIGR00635 103 PAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEP 181 (305)
T ss_pred HHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCH
Confidence 0 123345555667765443221 112346789999999999999988752111 1123
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHH
Q 041612 243 SIARDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 243 ~~~~~i~~~c~G~PLai~~i~~~L 266 (276)
+....|++.|+|.|-.+..+...+
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHH
Confidence 456789999999997766555443
No 12
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.40 E-value=7.6e-06 Score=73.21 Aligned_cols=155 Identities=20% Similarity=0.260 Sum_probs=85.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC----CHHHHHHHHHHHhC--CC----c
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ----DIRKIQEEIGDKLG--LK----F 172 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~----~~~~l~~~i~~~l~--~~----~ 172 (276)
.+...+..+..+.+.++|++|+||||||+.+.+..... | +.++... +...++........ .. .
T Consensus 26 ~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~I 98 (413)
T PRK13342 26 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVIEEARQRRSAGRRTILFI 98 (413)
T ss_pred HHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHHHHHHHhhhcCCceEEEE
Confidence 35566666677788999999999999999999876543 3 2222211 22223222221111 00 0
Q ss_pred cc--ccchhhhhhccccCCCCcEEEEE--ecccc--ccccCCCCCCceeCCCCCHHHHHHHHHHhhCCC-CCC-hhHHHH
Q 041612 173 HE--ESESGRANSLFTHGHKGCKVLLT--ARSQD--VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDY-IED-SEFQSI 244 (276)
Q Consensus 173 ~~--~~~~~~~~~l~~~~~~gs~IivT--TR~~~--va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~-~~~~~~ 244 (276)
++ ..+......+......|..++|. |.+.. +..........+.+.+++.++...++.+.+... ... .-..+.
T Consensus 99 DEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~a 178 (413)
T PRK13342 99 DEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEA 178 (413)
T ss_pred echhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 00 01111222222333345555553 44432 211122333578999999999999998876421 111 222456
Q ss_pred HHHHHHHcCCCcHHHHHHHH
Q 041612 245 ARDVAKECAGLPVSIVTIAR 264 (276)
Q Consensus 245 ~~~i~~~c~G~PLai~~i~~ 264 (276)
...|++.|+|-|..+.-+..
T Consensus 179 l~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 179 LDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 77889999999877654443
No 13
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=1.2e-05 Score=64.70 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=77.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC------cccccchhhhhhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK------FHEESESGRANSL 184 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~------~~~~~~~~~~~~l 184 (276)
+.+.-+.++|++|+||||||..+.+..... |. +.+.+......++ ..++..+... ....-+....+.+
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl-~~il~~l~~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDL-AAILTNLKEGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-HHHHHT--TT-EEEECTCCC--HHHHHHH
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHH-HHHHHhcCCCcEEEEechhhccHHHHHHH
Confidence 457789999999999999999999998865 42 3333221122222 2334443321 1111111111111
Q ss_pred cc----------------------cCCCCcEEEEEeccccccccCCCCCC-ceeCCCCCHHHHHHHHHHhhCCCCCChhH
Q 041612 185 FT----------------------HGHKGCKVLLTARSQDVLSGKMDSRP-NFSIGVLNEEEAWSLFKKMAGDYIEDSEF 241 (276)
Q Consensus 185 ~~----------------------~~~~gs~IivTTR~~~va~~~~~~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~ 241 (276)
.. ..++-+-|=-|||...+......-.. ..+++..+.+|-.++..+.+.--. .+-.
T Consensus 122 lpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~ 200 (233)
T PF05496_consen 122 LPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEID 200 (233)
T ss_dssp HHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-
T ss_pred HHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcC
Confidence 11 12223334458888766433222222 458999999999999988774111 1122
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 242 QSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 242 ~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
.+.+.+|+.+|.|-|--+.-+-+..+
T Consensus 201 ~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 201 EDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 35688999999999976665554443
No 14
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.29 E-value=5e-06 Score=70.84 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=83.4
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCc----------
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKF---------- 172 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~---------- 172 (276)
-|.+.++.+.++.+.+||++|+||||||+.+.+..+... .+||..+-......-.+.|.++-....
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilF 227 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILF 227 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEE
Confidence 666777778899999999999999999999998887653 677877766554444455544432110
Q ss_pred ---ccccchhhhhhccccCCCCcEEEE--Eecccccc--ccCCCCCCceeCCCCCHHHHHHHHHHh
Q 041612 173 ---HEESESGRANSLFTHGHKGCKVLL--TARSQDVL--SGKMDSRPNFSIGVLNEEEAWSLFKKM 231 (276)
Q Consensus 173 ---~~~~~~~~~~~l~~~~~~gs~Iiv--TTR~~~va--~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 231 (276)
....+..+.+.+...-.+|+-++| ||.|.+.- ........++-|+.|+.++-..++.+-
T Consensus 228 iDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 228 IDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred eHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 011122222333335667777776 78777642 223444567899999999999988763
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.29 E-value=1.5e-05 Score=69.12 Aligned_cols=148 Identities=17% Similarity=0.051 Sum_probs=80.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCc----c--cccchhhhhhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKF----H--EESESGRANSLF 185 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----~--~~~~~~~~~~l~ 185 (276)
..+.+.++|++|+|||+||+.+.+..... + .+.+.+.. .....+..++..+.... + +.-.......+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~-~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~ 123 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPAL-EKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILY 123 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccc-cChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHH
Confidence 45678899999999999999999987543 2 11221111 11122223333332211 0 000000000110
Q ss_pred c----------------------cCCCCcEEEEEeccccccccC-CCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHH
Q 041612 186 T----------------------HGHKGCKVLLTARSQDVLSGK-MDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQ 242 (276)
Q Consensus 186 ~----------------------~~~~gs~IivTTR~~~va~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 242 (276)
. ..++.+-|..||+...+.... ......+.++++++++..+++.+.+..... .--.
T Consensus 124 ~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~ 202 (328)
T PRK00080 124 PAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDE 202 (328)
T ss_pred HHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCH
Confidence 0 112334455666655442211 112346899999999999999988762211 1123
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHH
Q 041612 243 SIARDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 243 ~~~~~i~~~c~G~PLai~~i~~~L 266 (276)
+....|++.|+|.|-.+..+...+
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHH
Confidence 468899999999997666555543
No 16
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.28 E-value=5.4e-06 Score=67.86 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=86.8
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC----cccc---
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK----FHEE--- 175 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~----~~~~--- 175 (276)
.+..++.....+.+.|+|.+|+|||+||+.+++..... ....++++++.-.+.. ..++..+... .++.
T Consensus 28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~~---~~~~~~~~~~~lLvIDdi~~l 102 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQAD---PEVLEGLEQADLVCLDDVEAI 102 (226)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHhH---HHHHhhcccCCEEEEeChhhh
Confidence 45555445556789999999999999999999887543 3345566554332210 1222222110 0010
Q ss_pred cch-hhhhhccc----cCCCCcEEEEEecccccccc--------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHH
Q 041612 176 SES-GRANSLFT----HGHKGCKVLLTARSQDVLSG--------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQ 242 (276)
Q Consensus 176 ~~~-~~~~~l~~----~~~~gs~IivTTR~~~va~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 242 (276)
... .....+.. ....+.++|+||+....... .......+.+.++++++...++...+.... .+--.
T Consensus 103 ~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~ 181 (226)
T TIGR03420 103 AGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPD 181 (226)
T ss_pred cCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCH
Confidence 000 00111111 12234578888875431110 111235688999999999999887653111 11122
Q ss_pred HHHHHHHHHcCCCcHHHHHHHH
Q 041612 243 SIARDVAKECAGLPVSIVTIAR 264 (276)
Q Consensus 243 ~~~~~i~~~c~G~PLai~~i~~ 264 (276)
+..+.++..+.|.|..+.-+-.
T Consensus 182 ~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 182 EVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 4567788889999988776643
No 17
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=2.8e-06 Score=70.39 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=45.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc--CCHHHHHHHH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN--QDIRKIQEEI 164 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i 164 (276)
.-..++|.|++|+|||||++.++++.... +|+..+|+.+.+. .+..++++.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 34589999999999999999999998766 7999999997776 6889998888
No 18
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.19 E-value=2.7e-06 Score=74.01 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=45.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC--CHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ--DIRKIQEEIG 165 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~ 165 (276)
-...+|+|++|+|||||++.++++...+ +|+.++|+.+.+.. ...++++.+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4478999999999999999999999876 79999999998887 6777777775
No 19
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.18 E-value=9.7e-05 Score=65.01 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=84.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCC-CC---CeEEEEEecCcCCHHHHHHHHHHHh---CCCcccc--cchh--
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDK-LF---DQVVFVEVSQNQDIRKIQEEIGDKL---GLKFHEE--SESG-- 179 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~~~~~~~~~l~~~i~~~l---~~~~~~~--~~~~-- 179 (276)
...+.+.|+|++|+|||++++.++++..... .. -..+|++.....+...++..|++++ +...+.. ....
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4456899999999999999999998764321 01 2456777666667777888888777 2221110 0000
Q ss_pred -------------------hhhhc-----------ccc----CC--CCcEEEEEeccccccccC-----CCC-CCceeCC
Q 041612 180 -------------------RANSL-----------FTH----GH--KGCKVLLTARSQDVLSGK-----MDS-RPNFSIG 217 (276)
Q Consensus 180 -------------------~~~~l-----------~~~----~~--~gs~IivTTR~~~va~~~-----~~~-~~~~~l~ 217 (276)
..+.+ ... .. ....+|.+|......... ... ...+.++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~ 197 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP 197 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC
Confidence 00011 001 11 223344455433221110 011 2457899
Q ss_pred CCCHHHHHHHHHHhhC----CCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 218 VLNEEEAWSLFKKMAG----DYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 218 ~L~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
+++.++..+++..++. ....+++..+.+..++..+.|-|-.+
T Consensus 198 p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 198 PYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 9999999999988763 22234444455666777777887544
No 20
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.16 E-value=5.2e-05 Score=71.19 Aligned_cols=158 Identities=18% Similarity=0.254 Sum_probs=107.7
Q ss_pred HHHHhhcCC-CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-CHHHHHHHHHHHhCCCcccccchh-
Q 041612 103 NILSALEDP-DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-DIRKIQEEIGDKLGLKFHEESESG- 179 (276)
Q Consensus 103 ~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~~~~~~~- 179 (276)
.|++.|... +.|.+.|..+.|.|||||+......... =..+.|+++.+.. ++..+++.++..++.-.+...+..
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~ 102 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQ 102 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHH
Confidence 788888775 7999999999999999999999874333 3579999988654 677777777776653322211111
Q ss_pred ----------------------------------------------hhhhccccCCCCcEEEEEecccccccc-CCC-CC
Q 041612 180 ----------------------------------------------RANSLFTHGHKGCKVLLTARSQDVLSG-KMD-SR 211 (276)
Q Consensus 180 ----------------------------------------------~~~~l~~~~~~gs~IivTTR~~~va~~-~~~-~~ 211 (276)
....+.++.+++-..|+|||+..-..- .+. .+
T Consensus 103 ~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~ 182 (894)
T COG2909 103 TLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRD 182 (894)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehh
Confidence 111222277889999999998753110 011 11
Q ss_pred CceeCC----CCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 212 PNFSIG----VLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 212 ~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
..++++ .|+.+|+-++|....+..-+..+ .+.+.+..+|-+-|+..++=.++
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~----~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRGSLPLDAAD----LKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcCCCCCChHH----HHHHHhhcccHHHHHHHHHHHcc
Confidence 234443 48999999999988653333333 56788899999999988887776
No 21
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=8.6e-05 Score=64.01 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=91.5
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcc----cCCCCCeEEEEE-ecCcCCHHHHHHHHHHHhCCCcc---
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVK----SDKLFDQVVFVE-VSQNQDIRKIQEEIGDKLGLKFH--- 173 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~-~~~~~~~~~l~~~i~~~l~~~~~--- 173 (276)
.+.+.+..+. .+...++|+.|+||||+|+.++...- ...|+|...|.. -+.....+++ +.+.+.+.....
T Consensus 15 ~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~~~~~~~p~~~~ 93 (313)
T PRK05564 15 RIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNIIEEVNKKPYEGD 93 (313)
T ss_pred HHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHHHHHhcCcccCC
Confidence 4555555544 45778999999999999999988652 235677766655 3344455554 344454432211
Q ss_pred ---------cccchhh---hhhccccCCCCcEEEEEecccccc-ccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChh
Q 041612 174 ---------EESESGR---ANSLFTHGHKGCKVLLTARSQDVL-SGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSE 240 (276)
Q Consensus 174 ---------~~~~~~~---~~~l~~~~~~gs~IivTTR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 240 (276)
+.-+... +.+..+..++++.+|++|.+.+.. .........+++.++++++....+.+.... .+
T Consensus 94 ~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~--~~-- 169 (313)
T PRK05564 94 KKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND--IK-- 169 (313)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC--CC--
Confidence 1111111 222333667788999888765432 222233457889999999998877665421 11
Q ss_pred HHHHHHHHHHHcCCCcHHHH
Q 041612 241 FQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 241 ~~~~~~~i~~~c~G~PLai~ 260 (276)
.+.+..++..++|.|..+.
T Consensus 170 -~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 170 -EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 1235678888899886443
No 22
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.11 E-value=5.8e-05 Score=62.28 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC-HHHHHHHHHHHhCCC-cccc---cchhh----
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD-IRKIQEEIGDKLGLK-FHEE---SESGR---- 180 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i~~~l~~~-~~~~---~~~~~---- 180 (276)
....+.+.|+|++|+|||+|++.+++....+ -..+.|+++..... ..++.+.+ .+...- .++. .....
T Consensus 42 ~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~~~~~~~~~~-~~~dlliiDdi~~~~~~~~~~~~ 118 (235)
T PRK08084 42 QEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAWFVPEVLEGM-EQLSLVCIDNIECIAGDELWEMA 118 (235)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhhhhHHHHHHh-hhCCEEEEeChhhhcCCHHHHHH
Confidence 3445688999999999999999999876643 23556766654221 22222222 111100 0110 00011
Q ss_pred hhhccc-cCCCC-cEEEEEecccccccc--------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 041612 181 ANSLFT-HGHKG-CKVLLTARSQDVLSG--------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAK 250 (276)
Q Consensus 181 ~~~l~~-~~~~g-s~IivTTR~~~va~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~ 250 (276)
...+.. ....| .++|+||++..-... .+.....+.++++++++-.+++.+.+.... -.--+++..-|++
T Consensus 119 lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~ 197 (235)
T PRK08084 119 IFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLK 197 (235)
T ss_pred HHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 111111 11233 479999986532211 123345789999999999999987664221 1122456778888
Q ss_pred HcCCCcHHHHHH
Q 041612 251 ECAGLPVSIVTI 262 (276)
Q Consensus 251 ~c~G~PLai~~i 262 (276)
.+.|-.-++..+
T Consensus 198 ~~~~d~r~l~~~ 209 (235)
T PRK08084 198 RLDREMRTLFMT 209 (235)
T ss_pred hhcCCHHHHHHH
Confidence 888665544433
No 23
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=8.9e-06 Score=70.45 Aligned_cols=149 Identities=22% Similarity=0.318 Sum_probs=97.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCC-CeEEEEEecCcCCHHHHHHHHHHHhCCCccc-ccch-hhhhhccc--
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLF-DQVVFVEVSQNQDIRKIQEEIGDKLGLKFHE-ESES-GRANSLFT-- 186 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-~~~~-~~~~~l~~-- 186 (276)
..+.+.++|.|||||||++..+.. .... | +.+.++......+...+.-.....++....+ .+.. ........
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 468999999999999999999988 4433 5 5666777766667666666666656554433 1111 01111000
Q ss_pred -----------------------cCCCCcEEEEEeccccccccCCCCCCceeCCCCCHH-HHHHHHHHhhC----CCCCC
Q 041612 187 -----------------------HGHKGCKVLLTARSQDVLSGKMDSRPNFSIGVLNEE-EAWSLFKKMAG----DYIED 238 (276)
Q Consensus 187 -----------------------~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~----~~~~~ 238 (276)
.+.+.-.|+.|+|.... +.....+.+..|+.. ++.++|...+. .-...
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 55666778888887744 233445667776655 68888877764 11112
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 239 SEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 239 ~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
..-.....+|.++..|.||+|...++..+
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~ 194 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVR 194 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 22234578899999999999999998776
No 24
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.06 E-value=0.0013 Score=61.75 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.++..+.......+.|+|++|+||||||+.+++..+..
T Consensus 165 ~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 165 ALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 45555555566789999999999999999998877543
No 25
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.05 E-value=0.00019 Score=62.43 Aligned_cols=157 Identities=12% Similarity=0.130 Sum_probs=83.8
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-eEEEEEecCcC-------------------------C
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-QVVFVEVSQNQ-------------------------D 156 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-------------------------~ 156 (276)
.+..++..+..+.+.++|++|+||||+|+.+.+...... +. ..+.++++... .
T Consensus 26 ~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T PRK12402 26 RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSS 104 (337)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccc
Confidence 455555556556788999999999999999988765331 22 23444433210 0
Q ss_pred HHHHHHHHHHHhCC--C--c-------cc--ccchh---hhhhccccCCCCcEEEEEecccc-ccccCCCCCCceeCCCC
Q 041612 157 IRKIQEEIGDKLGL--K--F-------HE--ESESG---RANSLFTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVL 219 (276)
Q Consensus 157 ~~~l~~~i~~~l~~--~--~-------~~--~~~~~---~~~~l~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L 219 (276)
....++.++..... + . ++ .-... .+..+.......+++|+||.+.. +..........+.+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~ 184 (337)
T PRK12402 105 KIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAP 184 (337)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCC
Confidence 12233333322110 0 0 00 00111 11122223445678888875433 22222222346888999
Q ss_pred CHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 220 NEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 220 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
+.++...++.+.+...... --.+....+++.++|.+-.+..
T Consensus 185 ~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 185 TDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999998888876421111 1234567788888876555433
No 26
>PLN03025 replication factor C subunit; Provisional
Probab=98.03 E-value=9e-05 Score=64.06 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=80.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-eEEEEEecCcCCHHHHHHHHHHHhCC-------Cccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-QVVFVEVSQNQDIRKIQEEIGDKLGL-------KFHE 174 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~~l~~-------~~~~ 174 (276)
.|..++..+..+.+.++|++|+||||+|..+.+...... |. ..+-++.+...+... .+.++..+.. ....
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~~~~~~~~k 101 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGIDV-VRNKIKMFAQKKVTLPPGRHK 101 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHHH-HHHHHHHHHhccccCCCCCeE
Confidence 344444455556678999999999999999998864321 32 222233333333332 2333222110 0000
Q ss_pred c--------cchhh---hhhccccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHH
Q 041612 175 E--------SESGR---ANSLFTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQ 242 (276)
Q Consensus 175 ~--------~~~~~---~~~l~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 242 (276)
. -.... +.+..+.....+++|++|.... +..........++++++++++....+...+......- ..
T Consensus 102 viiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~ 180 (319)
T PLN03025 102 IVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-VP 180 (319)
T ss_pred EEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-CH
Confidence 0 00011 1111223445677777765432 2221122234789999999999998888775211111 12
Q ss_pred HHHHHHHHHcCCCcHH
Q 041612 243 SIARDVAKECAGLPVS 258 (276)
Q Consensus 243 ~~~~~i~~~c~G~PLa 258 (276)
+....|+..++|-.-.
T Consensus 181 ~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 181 EGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 3467788888876533
No 27
>PF13173 AAA_14: AAA domain
Probab=98.03 E-value=2.3e-05 Score=58.26 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=63.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHH----HHHHHHHHhCC--C---cccccchhhhhh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRK----IQEEIGDKLGL--K---FHEESESGRANS 183 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~----l~~~i~~~l~~--~---~~~~~~~~~~~~ 183 (276)
.+++.|.|+.|+|||||+++++.+.. ....+++++......... +.+.+.+.... . .++......+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~ 78 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWED 78 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHH
Confidence 36899999999999999999998876 145677777765543221 22333333211 1 011111111111
Q ss_pred ccc---cCCCCcEEEEEecccccccc-----CCCCCCceeCCCCCHHHH
Q 041612 184 LFT---HGHKGCKVLLTARSQDVLSG-----KMDSRPNFSIGVLNEEEA 224 (276)
Q Consensus 184 l~~---~~~~gs~IivTTR~~~va~~-----~~~~~~~~~l~~L~~~ea 224 (276)
..+ +..+..+|++|+.+...... ..+....+++.||+-.|.
T Consensus 79 ~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 79 ALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 111 44467899999987765422 223334688899987763
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.01 E-value=0.0001 Score=64.97 Aligned_cols=142 Identities=19% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc--CCHHHHHHHHHHHhCCCcc------c--------
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN--QDIRKIQEEIGDKLGLKFH------E-------- 174 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~~l~~~~~------~-------- 174 (276)
..++-+.++|++|+|||++|+.+++..... |-.+....+... .......+.+++......+ +
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~--~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~ 231 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKR 231 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCC--EEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcccc
Confidence 346679999999999999999999887543 322110000000 0111222233222111000 0
Q ss_pred --c---cch---hhhhhccc-----cCCCCcEEEEEecccccccc-C---CCCCCceeCCCCCHHHHHHHHHHhhCCCCC
Q 041612 175 --E---SES---GRANSLFT-----HGHKGCKVLLTARSQDVLSG-K---MDSRPNFSIGVLNEEEAWSLFKKMAGDYIE 237 (276)
Q Consensus 175 --~---~~~---~~~~~l~~-----~~~~gs~IivTTR~~~va~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 237 (276)
. .+. .....+.. ....+..||.||........ . ......+.++..+.++..++|..++.....
T Consensus 232 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l 311 (364)
T TIGR01242 232 TDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL 311 (364)
T ss_pred ccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC
Confidence 0 000 01111111 12346778888875432221 1 123457889999999999999988753222
Q ss_pred ChhHHHHHHHHHHHcCCCc
Q 041612 238 DSEFQSIARDVAKECAGLP 256 (276)
Q Consensus 238 ~~~~~~~~~~i~~~c~G~P 256 (276)
.++. -...++..+.|+.
T Consensus 312 ~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 312 AEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CccC--CHHHHHHHcCCCC
Confidence 2111 1346777787764
No 29
>PRK09087 hypothetical protein; Validated
Probab=98.00 E-value=7.2e-05 Score=61.26 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=75.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHH-hCCCcccc--cchhhhhhccc-cC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDK-LGLKFHEE--SESGRANSLFT-HG 188 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~-l~~~~~~~--~~~~~~~~l~~-~~ 188 (276)
.+.+.|+|.+|+|||+|++.++..... .|++.. .+.. .+...+.+. +-.+..+. .....+-.+.. ..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~-~~~~-~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~ 114 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN-EIGS-DAANAAAEGPVLIEDIDAGGFDETGLFHLINSVR 114 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH-Hcch-HHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998866422 133332 1111 111111100 00000000 01111111111 23
Q ss_pred CCCcEEEEEecccccc-----cc---CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHH
Q 041612 189 HKGCKVLLTARSQDVL-----SG---KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 189 ~~gs~IivTTR~~~va-----~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 260 (276)
..|..||+|++...-. .. .+.....++++++++++-..++.+.+..... .--+++..-|++++.|-+-++.
T Consensus 115 ~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 115 QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHH
Confidence 4467899998743211 11 1244468999999999999999988752211 1123567778888877766665
Q ss_pred H
Q 041612 261 T 261 (276)
Q Consensus 261 ~ 261 (276)
.
T Consensus 194 ~ 194 (226)
T PRK09087 194 T 194 (226)
T ss_pred H
Confidence 4
No 30
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=5.5e-06 Score=64.59 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC-CCCCeEEEE
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD-KLFDQVVFV 149 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv 149 (276)
+.|.|+|++|+||||||+.+++..... -+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 468999999999999999999997654 347777753
No 31
>PRK05642 DNA replication initiation factor; Validated
Probab=97.97 E-value=7.8e-05 Score=61.45 Aligned_cols=147 Identities=12% Similarity=0.196 Sum_probs=80.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC-HHHHHHHHHHHhCCC-cccc---cchhh-hhhccc-
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD-IRKIQEEIGDKLGLK-FHEE---SESGR-ANSLFT- 186 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i~~~l~~~-~~~~---~~~~~-~~~l~~- 186 (276)
..+.|+|.+|+|||+|++.+++....+ -..++|++...-.. ...+.+.+. ....- .++. ..... ...++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~-~~d~LiiDDi~~~~~~~~~~~~Lf~l 122 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAELLDRGPELLDNLE-QYELVCLDDLDVIAGKADWEEALFHL 122 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHHHHhhhHHHHHhhh-hCCEEEEechhhhcCChHHHHHHHHH
Confidence 578999999999999999998876543 23566776543221 112221111 11000 0000 00011 111222
Q ss_pred ---cCCCCcEEEEEecccccccc--------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCC
Q 041612 187 ---HGHKGCKVLLTARSQDVLSG--------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGL 255 (276)
Q Consensus 187 ---~~~~gs~IivTTR~~~va~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~ 255 (276)
....|..||+|++...-... .+.....+.++++++++-..++...+..... .--+++..-|++++.|-
T Consensus 123 ~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~-~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 123 FNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL-HLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCC
Confidence 23356789998875432111 0122346889999999999999866642211 11146778888888877
Q ss_pred cHHHHHHHH
Q 041612 256 PVSIVTIAR 264 (276)
Q Consensus 256 PLai~~i~~ 264 (276)
.-.+..+-.
T Consensus 202 ~r~l~~~l~ 210 (234)
T PRK05642 202 MSALFDLLE 210 (234)
T ss_pred HHHHHHHHH
Confidence 555544433
No 32
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.95 E-value=0.00031 Score=55.82 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=84.1
Q ss_pred HHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 104 ILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 104 l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
|.+.+..+.. +.+.++|+.|+|||++|+.+....... .+.+..+..........+.+ +
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i-~ 82 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV-R 82 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH-H
Confidence 4445555544 678999999999999999988876432 23333332222223344443 3
Q ss_pred HHHHHhCCCcc------------cccchh---hhhhccccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFH------------EESESG---RANSLFTHGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~------------~~~~~~---~~~~l~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+.+.+..... +.-... .+....+...+.+.+|++|++. .+..........+.+.+++.++..+
T Consensus 83 ~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~ 162 (188)
T TIGR00678 83 ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQ 162 (188)
T ss_pred HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHH
Confidence 34444332110 001111 1122222445566777777654 2222222233579999999999988
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVS 258 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 258 (276)
.+.+. + .+ .+.+..|+..++|.|..
T Consensus 163 ~l~~~-g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 163 WLIRQ-G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHc-C---CC---HHHHHHHHHHcCCCccc
Confidence 88777 2 11 34578899999998853
No 33
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.90 E-value=2.3e-05 Score=58.24 Aligned_cols=63 Identities=29% Similarity=0.473 Sum_probs=47.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCC---CCCeEEEEEecCcCCHHHHHHHHHHHhCCCccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDK---LFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFHE 174 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~ 174 (276)
+.+.+.|+|.+|+|||+++..+.+...... .-..++|+.++...+...+...|++.++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc
Confidence 346899999999999999999999875310 024567999988889999999999999887665
No 34
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=0.00025 Score=62.97 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=71.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc-----CCHHHHHHHHHHHhCCCc-------------
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN-----QDIRKIQEEIGDKLGLKF------------- 172 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~l~~~i~~~l~~~~------------- 172 (276)
..++-|.++|++|+|||++|+.+++..... |- .+..+.- .......+.+++......
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~--~i---~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~ 237 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FI---RVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIA 237 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCC--EE---EeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhh
Confidence 456779999999999999999999876532 21 1111110 011233333333221100
Q ss_pred ---ccc--c-chh---hhhhccc-----cCCCCcEEEEEecccccccc-CC---CCCCceeCCCCCHHHHHHHHHHhhCC
Q 041612 173 ---HEE--S-ESG---RANSLFT-----HGHKGCKVLLTARSQDVLSG-KM---DSRPNFSIGVLNEEEAWSLFKKMAGD 234 (276)
Q Consensus 173 ---~~~--~-~~~---~~~~l~~-----~~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 234 (276)
.+. . +.. ....+.. ....+..||.||........ .. .....+.++..+.++-.++|+.+...
T Consensus 238 ~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 238 AKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred cccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 000 0 000 0111111 12235567777765433221 11 23457899999999999999988753
Q ss_pred CCC--ChhHHHHHHHHHHHcCCC
Q 041612 235 YIE--DSEFQSIARDVAKECAGL 255 (276)
Q Consensus 235 ~~~--~~~~~~~~~~i~~~c~G~ 255 (276)
... +.+ ...++..+.|+
T Consensus 318 ~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 318 MNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCCcCC----HHHHHHHcCCC
Confidence 222 223 34566666665
No 35
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00055 Score=64.53 Aligned_cols=160 Identities=14% Similarity=0.179 Sum_probs=90.4
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD-------------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+++..+. .+.+.++|..|+||||+|+.+.+...-. +.|...++++.+......++ +
T Consensus 27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdI-R 105 (830)
T PRK07003 27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEM-A 105 (830)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHH-H
Confidence 5555565555 4456899999999999999888765321 11223455555444444433 3
Q ss_pred HHHHHhCCC-c---------cc--ccchhhhhhccc---cCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLK-F---------HE--ESESGRANSLFT---HGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~-~---------~~--~~~~~~~~~l~~---~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+++.+... . ++ .-.....+.+.+ ......++|+||.+.. +......-...++++.++.++..+
T Consensus 106 eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~ 185 (830)
T PRK07003 106 ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVS 185 (830)
T ss_pred HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHH
Confidence 344432111 0 00 011111122222 4455788888877654 332333344579999999999999
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCc-HHHHHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLP-VSIVTIAR 264 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~i~~ 264 (276)
.+.+....... .--.+....|++.++|.. -|+..+-.
T Consensus 186 ~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 186 HLERILGEERI-AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99887752111 112345678888998854 45555433
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00026 Score=67.83 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=86.5
Q ss_pred HHHHhhcCCCccE-EEEEcCCCCcHHHHHHHHHHhcccCC-------------------CCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDVNM-LGIYGMGGIGKTMLAEEIARKVKSDK-------------------LFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+.+..+.+.- +.++|++|+||||+|+.+.+...... .|...+++.......+.. ++
T Consensus 27 ~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDd-IR 105 (944)
T PRK14949 27 ALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDD-TR 105 (944)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHH-HH
Confidence 4555555555444 58999999999999999998875321 122234443332223333 34
Q ss_pred HHHHHhCCCcc----cc--------cchhhhhhccc---cCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFH----EE--------SESGRANSLFT---HGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~----~~--------~~~~~~~~l~~---~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.|.+.+..... .. -.....+.+++ ......++|++|.+ ..+..........|++++|+.++...
T Consensus 106 eLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~ 185 (944)
T PRK14949 106 ELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGT 185 (944)
T ss_pred HHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHH
Confidence 45443321110 00 11111122222 34455666665544 43433323334679999999999999
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
.+.+.+..... .--.+....|++.++|.|--+..
T Consensus 186 ~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 186 QLNHILTQEQL-PFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99887642111 11234567889999998754443
No 37
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.85 E-value=0.00016 Score=68.74 Aligned_cols=148 Identities=20% Similarity=0.274 Sum_probs=77.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec--CcCCHHHHHHHHHHHhCC--C-----cc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS--QNQDIRKIQEEIGDKLGL--K-----FH 173 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~l~~~i~~~l~~--~-----~~ 173 (276)
.+...+..+....+.++|++|+||||||+.+++..... |. .++.. ...+....+..+...+.. . .+
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~--f~---~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~ID 116 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH--FS---SLNAVLAGVKDLRAEVDRAKERLERHGKRTILFID 116 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc--ce---eehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEe
Confidence 34455566677788999999999999999999876533 42 11111 111222222222221111 0 00
Q ss_pred c--ccchhhhhhccccCCCCcEEEEE--ecccc--ccccCCCCCCceeCCCCCHHHHHHHHHHhhCC------CCCChhH
Q 041612 174 E--ESESGRANSLFTHGHKGCKVLLT--ARSQD--VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGD------YIEDSEF 241 (276)
Q Consensus 174 ~--~~~~~~~~~l~~~~~~gs~IivT--TR~~~--va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~------~~~~~~~ 241 (276)
+ ..+......+......|+.++|+ |.+.. +..........+.+++|+.++...++.+.+.. .....--
T Consensus 117 EIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~ 196 (725)
T PRK13341 117 EVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE 196 (725)
T ss_pred ChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC
Confidence 0 01111222233333446656653 44431 21112222457899999999999999876531 1111112
Q ss_pred HHHHHHHHHHcCCC
Q 041612 242 QSIARDVAKECAGL 255 (276)
Q Consensus 242 ~~~~~~i~~~c~G~ 255 (276)
.+....|++.+.|-
T Consensus 197 deaL~~La~~s~GD 210 (725)
T PRK13341 197 PEAEKHLVDVANGD 210 (725)
T ss_pred HHHHHHHHHhCCCC
Confidence 34566777777775
No 38
>PRK08727 hypothetical protein; Validated
Probab=97.82 E-value=0.0002 Score=58.96 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC----cccc---c-chhhhhhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK----FHEE---S-ESGRANSLF 185 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~----~~~~---~-~~~~~~~l~ 185 (276)
..+.|+|.+|+|||+|++.+++....+ ...+.|+++..... -+..+++.+... .++. . .......++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~~~~---~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf 116 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQAAAG---RLRDALEALEGRSLVALDGLESIAGQREDEVALF 116 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHHhhh---hHHHHHHHHhcCCEEEEeCcccccCChHHHHHHH
Confidence 469999999999999999999887655 23566776544221 111222222111 0010 0 000111111
Q ss_pred c----cCCCCcEEEEEeccccccc-----c---CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcC
Q 041612 186 T----HGHKGCKVLLTARSQDVLS-----G---KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECA 253 (276)
Q Consensus 186 ~----~~~~gs~IivTTR~~~va~-----~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~ 253 (276)
. ....|..||+||+...-.. . .+.....+++++++.++-..++.+++..... .--.+...-|++.+.
T Consensus 117 ~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~ 195 (233)
T PRK08727 117 DFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGE 195 (233)
T ss_pred HHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCC
Confidence 1 2234667999998642211 1 1122447899999999999999987642111 112345667888887
Q ss_pred CCcHHH
Q 041612 254 GLPVSI 259 (276)
Q Consensus 254 G~PLai 259 (276)
|-.-.+
T Consensus 196 rd~r~~ 201 (233)
T PRK08727 196 RELAGL 201 (233)
T ss_pred CCHHHH
Confidence 554444
No 39
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.82 E-value=5.3e-05 Score=66.32 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=45.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc--CCHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN--QDIRKIQEEIGD 166 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~ 166 (276)
-..++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg 222 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKG 222 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhc
Confidence 4468999999999999999999998766 7999999999866 688888888843
No 40
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.82 E-value=0.00013 Score=59.88 Aligned_cols=149 Identities=10% Similarity=0.139 Sum_probs=77.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHH---hCCCcccccchhhhhhccc--
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDK---LGLKFHEESESGRANSLFT-- 186 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~---l~~~~~~~~~~~~~~~l~~-- 186 (276)
..+.+.|+|.+|+|||+||+.+++.....+ ....+++....... .. .... +-.+.-+.........+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~~---~~-~~~~~~~liiDdi~~l~~~~~~~L~~~~ 114 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLLA---FD-FDPEAELYAVDDVERLDDAQQIALFNLF 114 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHHH---Hh-hcccCCEEEEeChhhcCchHHHHHHHHH
Confidence 345789999999999999999998864331 23344444332111 00 0000 0000000000111111111
Q ss_pred --cCCCCc-EEEEEecccccccc-------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCc
Q 041612 187 --HGHKGC-KVLLTARSQDVLSG-------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLP 256 (276)
Q Consensus 187 --~~~~gs-~IivTTR~~~va~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~P 256 (276)
....+. .+|+|++....... .+.....+.++++++++-..++.+.+.... ..--.+....+++.+.|.|
T Consensus 115 ~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~ 193 (227)
T PRK08903 115 NRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDM 193 (227)
T ss_pred HHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCH
Confidence 122344 36666664332111 111235788999999887777766543111 1112346777888899999
Q ss_pred HHHHHHHHHHh
Q 041612 257 VSIVTIARALR 267 (276)
Q Consensus 257 Lai~~i~~~L~ 267 (276)
..+..+-..|.
T Consensus 194 ~~l~~~l~~l~ 204 (227)
T PRK08903 194 PSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHHH
Confidence 98877766553
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.82 E-value=0.00079 Score=58.00 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=82.4
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCe-EEEEEecCcCCHH---HHHHHHHHHhCCC-c-----
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQ-VVFVEVSQNQDIR---KIQEEIGDKLGLK-F----- 172 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~---~l~~~i~~~l~~~-~----- 172 (276)
.+..++.....+.+.++|.+|+||||+++.+.+...... +.. .+-++.+...... ..+..+....... .
T Consensus 28 ~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vv 106 (319)
T PRK00440 28 RLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKII 106 (319)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEE
Confidence 455555555556689999999999999999998875432 221 1222222222222 2222222221111 0
Q ss_pred --cccc--chh---hhhhccccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHH
Q 041612 173 --HEES--ESG---RANSLFTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSI 244 (276)
Q Consensus 173 --~~~~--~~~---~~~~l~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 244 (276)
++.. ... .+..+.......+.+|+++.... +..........+++.++++++....+...+...... -..+.
T Consensus 107 iiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~a 185 (319)
T PRK00440 107 FLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE-ITDDA 185 (319)
T ss_pred EEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHH
Confidence 0000 010 11122224445577777764332 211111123367889999999988888877521111 11235
Q ss_pred HHHHHHHcCCCcHHHHH
Q 041612 245 ARDVAKECAGLPVSIVT 261 (276)
Q Consensus 245 ~~~i~~~c~G~PLai~~ 261 (276)
...+++.++|-+--+..
T Consensus 186 l~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 186 LEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 67788899887765433
No 42
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.79 E-value=0.00043 Score=62.04 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...+-+.++|++|+|||++|+.+.+....
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45667889999999999999999997654
No 43
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00027 Score=65.62 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=88.0
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccC------------------------CCCCeEEEEEecCcCCH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSD------------------------KLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------~~f~~~~wv~~~~~~~~ 157 (276)
.|.+.+..+.+ +.+.++|..|+||||+|+.+.+...-. +.|...++++..+...+
T Consensus 27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gV 106 (700)
T PRK12323 27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGV 106 (700)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCH
Confidence 55556666554 456889999999999999998776421 01222445554444444
Q ss_pred HHHHHHHHHHhCCCc-c-----------cccchhhhhhccc---cCCCCcEEEEEec-cccccccCCCCCCceeCCCCCH
Q 041612 158 RKIQEEIGDKLGLKF-H-----------EESESGRANSLFT---HGHKGCKVLLTAR-SQDVLSGKMDSRPNFSIGVLNE 221 (276)
Q Consensus 158 ~~l~~~i~~~l~~~~-~-----------~~~~~~~~~~l~~---~~~~gs~IivTTR-~~~va~~~~~~~~~~~l~~L~~ 221 (276)
.++ +++++.+.... . +.-+....+.+.+ ....++.+|++|. ...+......-...++++.++.
T Consensus 107 DdI-ReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~ 185 (700)
T PRK12323 107 DEM-AQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP 185 (700)
T ss_pred HHH-HHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCCh
Confidence 443 33433322110 0 0011111222222 3344556555554 4444433333345789999999
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 222 EEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 222 ~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
++..+.+.+.+....... -.+....|++.++|.|.....+
T Consensus 186 eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 999998887764211111 1234577899999988655443
No 44
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00084 Score=61.03 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
...+++|+|.+|+||||++..+......+.....+..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 3579999999999999999998876544321233444443
No 45
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0014 Score=57.75 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=83.5
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCC-------------------CCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDK-------------------LFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.+.+.+..+. .+.+.++|++|+||||+|+.+.+...... .+....++..+....... .+
T Consensus 27 ~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir 105 (363)
T PRK14961 27 AISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEE-MR 105 (363)
T ss_pred HHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHH-HH
Confidence 3444444444 45678999999999999999988764211 111223333332233333 34
Q ss_pred HHHHHhCCCcc----------c--ccchhhhhhcc---ccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFH----------E--ESESGRANSLF---THGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~----------~--~~~~~~~~~l~---~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+.+.+..... + .-.......+. ...+...++|++|.+. .+..........+++.+++.++..+
T Consensus 106 ~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~ 185 (363)
T PRK14961 106 EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFN 185 (363)
T ss_pred HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHH
Confidence 55444321110 0 00111111222 2445566777776543 2322222234578999999999998
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
.+.+.+..... .--.+....|+..++|-|-.+
T Consensus 186 ~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 186 FLKYILIKESI-DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 88876642111 111234667888999977543
No 46
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0014 Score=59.97 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=83.8
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccCCCC------------------CeEEEEEecCcCCHHHHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSDKLF------------------DQVVFVEVSQNQDIRKIQEE 163 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------------------~~~~wv~~~~~~~~~~l~~~ 163 (276)
.|...+..+.. +.+.++|++|+||||+|+.+.+.....+.+ ..+.+++.+....... .++
T Consensus 25 ~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~-iR~ 103 (504)
T PRK14963 25 VLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVED-VRD 103 (504)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHH-HHH
Confidence 34444444443 456999999999999999998877432111 1234444443333333 234
Q ss_pred HHHHhCCC-c---------c--cccchhhhhhccc---cCCCCcEEEEEec-cccccccCCCCCCceeCCCCCHHHHHHH
Q 041612 164 IGDKLGLK-F---------H--EESESGRANSLFT---HGHKGCKVLLTAR-SQDVLSGKMDSRPNFSIGVLNEEEAWSL 227 (276)
Q Consensus 164 i~~~l~~~-~---------~--~~~~~~~~~~l~~---~~~~gs~IivTTR-~~~va~~~~~~~~~~~l~~L~~~ea~~L 227 (276)
+...+... . + +.........+.+ .....+.+|++|. ...+..........+++.+++.++....
T Consensus 104 l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~ 183 (504)
T PRK14963 104 LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGK 183 (504)
T ss_pred HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHH
Confidence 43333211 0 0 0011111222222 3334455555554 3334222233345799999999999999
Q ss_pred HHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 228 FKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
+.+.+......- -.+....|++.++|.+--+
T Consensus 184 L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 184 LRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 988775211111 2245678899999987544
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.68 E-value=0.00071 Score=60.06 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..++-+.++|++|+|||+||+.+.+....
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 45678999999999999999999987654
No 48
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0016 Score=57.74 Aligned_cols=140 Identities=17% Similarity=0.129 Sum_probs=78.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCeEEEEEe-cCcCCHHHHHHHHHHHhCCCc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD-------------------KLFDQVVFVEV-SQNQDIRKIQEEIGDKLGLKF 172 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~-~~~~~~~~l~~~i~~~l~~~~ 172 (276)
.+-+.++|++|+|||++|+.+....--. .|.|.. ++.. +......++ +.+.+.+....
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~-~i~~~~~~i~i~~i-R~l~~~~~~~p 113 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVR-VVAPEGLSIGVDEV-RELVTIAARRP 113 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE-EeccccccCCHHHH-HHHHHHHHhCc
Confidence 4568899999999999999987654221 233332 3322 222334333 34444432211
Q ss_pred c------------cccchhhhh---hccccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCC
Q 041612 173 H------------EESESGRAN---SLFTHGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYI 236 (276)
Q Consensus 173 ~------------~~~~~~~~~---~l~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 236 (276)
. +.-+....+ +..+...++..+|++|.+. .+..........+.+.+++.++..+.+....+
T Consensus 114 ~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--- 190 (394)
T PRK07940 114 STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--- 190 (394)
T ss_pred ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---
Confidence 1 001111112 2222445566677776664 34333333346899999999999988875432
Q ss_pred CChhHHHHHHHHHHHcCCCcHHHH
Q 041612 237 EDSEFQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 237 ~~~~~~~~~~~i~~~c~G~PLai~ 260 (276)
.+ .+.+..++..++|.|....
T Consensus 191 ~~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 191 VD---PETARRAARASQGHIGRAR 211 (394)
T ss_pred CC---HHHHHHHHHHcCCCHHHHH
Confidence 11 2346778899999887553
No 49
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0016 Score=60.00 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=84.1
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSD-------------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|...+..+.. +.+.++|+.|+||||+|+.+.+...-. +.|...+++.........++ +
T Consensus 27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r 105 (546)
T PRK14957 27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-K 105 (546)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-H
Confidence 45555555443 457889999999999999998765321 11233444444333333332 3
Q ss_pred HHHHHhCCC-c---------c--cccchhhhhhc---cccCCCCcEEEEEec-cccccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLK-F---------H--EESESGRANSL---FTHGHKGCKVLLTAR-SQDVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~-~---------~--~~~~~~~~~~l---~~~~~~gs~IivTTR-~~~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+++.+... . + +.-+......+ .+.....+.+|++|- ...+..........+++++++.++...
T Consensus 106 ~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~ 185 (546)
T PRK14957 106 EILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKD 185 (546)
T ss_pred HHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHH
Confidence 333332211 0 0 00111112222 224445566665553 333432223334679999999999888
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCc-HHHHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLP-VSIVTIA 263 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~i~ 263 (276)
.+.+.+..... .--......|+..++|-+ .|+..+-
T Consensus 186 ~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 186 QLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88776542111 112234567888888855 4544443
No 50
>PRK07261 topology modulation protein; Provisional
Probab=97.62 E-value=0.00017 Score=56.50 Aligned_cols=54 Identities=24% Similarity=0.368 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC-CCCCeEEEEEecCcCCHHHHHHHHHHHh
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD-KLFDQVVFVEVSQNQDIRKIQEEIGDKL 168 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~l~~~i~~~l 168 (276)
.|.|+|++|+||||||+.+....... -+.|...|-......+...+...+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 58999999999999999998775432 1356666754333334445544444333
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.0021 Score=53.48 Aligned_cols=148 Identities=17% Similarity=0.118 Sum_probs=80.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC------cccccchhhhhhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK------FHEESESGRANSL 184 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~------~~~~~~~~~~~~l 184 (276)
+.+--+.++|++|.||||||..+.+...++ +. +.-+.......-+..|+..+... .....+....+.+
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~L 123 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----ITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVL 123 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----ecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHh
Confidence 446689999999999999999999998776 21 11111111111111222221110 0000000000000
Q ss_pred cc----------------------cCCCCcEEEEEeccccccccC-CCCCCceeCCCCCHHHHHHHHHHhhC--CCCCCh
Q 041612 185 FT----------------------HGHKGCKVLLTARSQDVLSGK-MDSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDS 239 (276)
Q Consensus 185 ~~----------------------~~~~gs~IivTTR~~~va~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~ 239 (276)
.. +.++-.-|=-|||...+.... ....-+.+++.-+.+|-.++..+.+. +-..++
T Consensus 124 YpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~ 203 (332)
T COG2255 124 YPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDE 203 (332)
T ss_pred hhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCCh
Confidence 00 223333344589977664321 12234678889999999999988774 222222
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 240 EFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 240 ~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
+-+.+|+++.+|-|--..-+-+..+
T Consensus 204 ---~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 204 ---EAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred ---HHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3477899999999976555444443
No 52
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.58 E-value=0.0041 Score=52.74 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc-CCHHHHHHHHHHHhCCCc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN-QDIRKIQEEIGDKLGLKF 172 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~ 172 (276)
..++++++|++|+||||++..+......+..-..+..++.... ......+......++.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~ 254 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV 254 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce
Confidence 4569999999999999999998877654310124455554321 122333334445555444
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=97.57 E-value=0.0015 Score=59.79 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=74.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC-------Cc-----ccccc---
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL-------KF-----HEESE--- 177 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~-------~~-----~~~~~--- 177 (276)
.+.+.|+|++|+||||+|+.+++... |+. +-++.+...+...+ ..++..... .. ++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~~i-~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTADVI-ERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHHHH-HHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 57899999999999999999998874 322 23344433333322 222221110 00 00000
Q ss_pred ---hhhhhhccc-cCCCCcEEEEEecccc-ccc-cCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 041612 178 ---SGRANSLFT-HGHKGCKVLLTARSQD-VLS-GKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKE 251 (276)
Q Consensus 178 ---~~~~~~l~~-~~~~gs~IivTTR~~~-va~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~ 251 (276)
......+.. ....++.||+|+-+.. ... ........+.+.+++.++....+.+.+......- -.+....|++.
T Consensus 113 ~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~ 191 (482)
T PRK04195 113 NEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAER 191 (482)
T ss_pred ccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 001111111 1234455777664432 111 1122345788999999999888887764211111 12456778888
Q ss_pred cCCCcHHHH
Q 041612 252 CAGLPVSIV 260 (276)
Q Consensus 252 c~G~PLai~ 260 (276)
++|-.-.+.
T Consensus 192 s~GDlR~ai 200 (482)
T PRK04195 192 SGGDLRSAI 200 (482)
T ss_pred cCCCHHHHH
Confidence 877554443
No 54
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.56 E-value=0.00045 Score=56.33 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=75.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHH------------HhCCC----ccc--
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGD------------KLGLK----FHE-- 174 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~------------~l~~~----~~~-- 174 (276)
...+-|+|..|+|||+|.+.+++.......=..++|++.. ++...+.. .+... .++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~ 107 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE------EFIREFADALRDGEIEEFKDRLRSADLLIIDDIQ 107 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH------HHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGG
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH------HHHHHHHHHHHcccchhhhhhhhcCCEEEEecch
Confidence 3468899999999999999999987653111245565432 22222221 11110 000
Q ss_pred -ccchh-hhhhccc----cCCCCcEEEEEecccccc-cc-------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChh
Q 041612 175 -ESESG-RANSLFT----HGHKGCKVLLTARSQDVL-SG-------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSE 240 (276)
Q Consensus 175 -~~~~~-~~~~l~~----~~~~gs~IivTTR~~~va-~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 240 (276)
..... ....++. ....|.+||+|++...-. .. .+...-.+.++++++++-..++.+.+...... -
T Consensus 108 ~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~-l 186 (219)
T PF00308_consen 108 FLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE-L 186 (219)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S
T ss_pred hhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC-C
Confidence 00101 0111111 334567899999655321 11 12233478999999999999999888521111 2
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHH
Q 041612 241 FQSIARDVAKECAGLPVSIVTIA 263 (276)
Q Consensus 241 ~~~~~~~i~~~c~G~PLai~~i~ 263 (276)
-+++..-|++.+.+..-.+..+-
T Consensus 187 ~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 187 PEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp -HHHHHHHHHHTTSSHHHHHHHH
T ss_pred cHHHHHHHHHhhcCCHHHHHHHH
Confidence 23567778888876665554443
No 55
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.56 E-value=7.2e-05 Score=54.80 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+|.|.|++|+||||+|+.+....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 56
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0008 Score=60.82 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=82.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC--------------C----ccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL--------------K----FHE 174 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~--------------~----~~~ 174 (276)
..-+.|+|..|+|||+|++.+.+.......--.+++++.. .+...+...++. . .++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~------~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDD 214 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD------EFARKAVDILQKTHKEIEQFKNEICQNDVLIIDD 214 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEec
Confidence 3458899999999999999999876543212344555442 222222211111 0 000
Q ss_pred c---cc-hhhhhhccc----cCCCCcEEEEEeccccc-ccc-------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCC-
Q 041612 175 E---SE-SGRANSLFT----HGHKGCKVLLTARSQDV-LSG-------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIE- 237 (276)
Q Consensus 175 ~---~~-~~~~~~l~~----~~~~gs~IivTTR~~~v-a~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~- 237 (276)
. .. ......++. ....|..||+|+....- ... .+...-...+++++.++-..++.+.+.....
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~ 294 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK 294 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC
Confidence 0 00 011111211 23345578888754321 110 1233446779999999999999988752211
Q ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 041612 238 DSEFQSIARDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 238 ~~~~~~~~~~i~~~c~G~PLai~~i~~~L 266 (276)
..-.+++..-|+..+.|.|-.+.-+...+
T Consensus 295 ~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 295 QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 12224577888888988887776655433
No 57
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0034 Score=55.07 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=39.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCCcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~ 173 (276)
.-.++.++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~ 198 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH 198 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE
Confidence 356999999999999999999988764331123455554332 22344455555666665543
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00029 Score=52.73 Aligned_cols=51 Identities=31% Similarity=0.365 Sum_probs=36.4
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ 155 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 155 (276)
.+...+..+..+.+.|+|.+|+|||++++.+++..... -..++++......
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~ 59 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLL 59 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhh
Confidence 34444445456789999999999999999999988533 2346666665543
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0027 Score=57.72 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=86.3
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccCCC-------------------CCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSDKL-------------------FDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|...+..+.. +.+.++|++|+||||+|+.+.+....... +.....++.+.......+ +
T Consensus 25 ~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~i-R 103 (472)
T PRK14962 25 LIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEI-R 103 (472)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHH-H
Confidence 44444555554 45789999999999999999887543110 112334444433334433 3
Q ss_pred HHHHHhCCCcc----cc---cc-----hhhhhhccc---cCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFH----EE---SE-----SGRANSLFT---HGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~----~~---~~-----~~~~~~l~~---~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+.+....... .. ++ ......+.. ..+....+|++|.+ ..+..........+.+.+++.++...
T Consensus 104 ~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~ 183 (472)
T PRK14962 104 KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIK 183 (472)
T ss_pred HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHH
Confidence 44443321100 00 11 111111222 32333444444443 33433333344578999999999988
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcC-CCcHHHHHHHHHHh
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECA-GLPVSIVTIARALR 267 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~-G~PLai~~i~~~L~ 267 (276)
.+.+.+..... .-..+....|+..++ +++.++..+-.+..
T Consensus 184 ~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 184 RLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88887642111 111245667888775 56777777766543
No 60
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.53 E-value=0.0026 Score=53.64 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=53.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CeEEEEEecCcCCHHHHHHHHHHHhCCCccccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLF----DQVVFVEVSQNQDIRKIQEEIGDKLGLKFHEES 176 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~ 176 (276)
...+.+.|+|.+|.|||++++.+...+-....- -.++.+.....++...+...|+.+++.+.....
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~ 128 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD 128 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC
Confidence 346789999999999999999999877543111 157788888999999999999999999876543
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0018 Score=60.71 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=84.6
Q ss_pred HHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHhcccCC-------------------CCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDVN-MLGIYGMGGIGKTMLAEEIARKVKSDK-------------------LFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+.+..+... .+.++|..|+||||+|+.+.+...-.. .|...+.++.......++ .+
T Consensus 27 ~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~Vdd-iR 105 (647)
T PRK07994 27 ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVED-TR 105 (647)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHH-HH
Confidence 445555555543 468899999999999999877754311 121223344333233333 34
Q ss_pred HHHHHhCCCcc----c--------ccchhhhhhccc---cCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFH----E--------ESESGRANSLFT---HGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~----~--------~~~~~~~~~l~~---~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+.+.+..... . .-+....+.+.+ ......++|++|.+ ..+......-...+++++|+.++...
T Consensus 106 ~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~ 185 (647)
T PRK07994 106 ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQ 185 (647)
T ss_pred HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHH
Confidence 44444321110 0 011111222222 44455566655544 44433333335689999999999999
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
.+.+........ --......|++.++|.|--+..
T Consensus 186 ~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 186 QLEHILQAEQIP-FEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 988776311111 1123456788899997764433
No 62
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.48 E-value=0.0002 Score=63.73 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=43.9
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 161 (276)
.++..|.. .+.+.++|++|+|||++|+.+++......+|+.+.|+.+++..+..+++
T Consensus 186 ~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 186 TILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred HHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 44444443 3478889999999999999999988766668889999988776655543
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0033 Score=57.51 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=83.8
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCCC-----------------------CCeEEEEEecCcCCHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDKL-----------------------FDQVVFVEVSQNQDIR 158 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------------f~~~~wv~~~~~~~~~ 158 (276)
.|.+.+..+. .+.+.++|++|+||||+|+.+++....... ...++.++..+.....
T Consensus 32 ~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd 111 (507)
T PRK06645 32 VLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVD 111 (507)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHH
Confidence 3333344443 457889999999999999999887643210 0123334444444444
Q ss_pred HHHHHHHHHhC-CCcc---------c--ccchhhhhhcc---ccCCCCcEEEE-EeccccccccCCCCCCceeCCCCCHH
Q 041612 159 KIQEEIGDKLG-LKFH---------E--ESESGRANSLF---THGHKGCKVLL-TARSQDVLSGKMDSRPNFSIGVLNEE 222 (276)
Q Consensus 159 ~l~~~i~~~l~-~~~~---------~--~~~~~~~~~l~---~~~~~gs~Iiv-TTR~~~va~~~~~~~~~~~l~~L~~~ 222 (276)
++ +.+++... .+.. + .-.......+. ....+.+.+|+ ||+...+..........+.+++++.+
T Consensus 112 ~I-r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~ 190 (507)
T PRK06645 112 DI-RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFE 190 (507)
T ss_pred HH-HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHH
Confidence 44 33443331 1110 0 00111112222 24445566655 44544443332333457889999999
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 223 EAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 223 ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
+....+.+.+......- -.+....|+..++|.+--+
T Consensus 191 el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 191 EIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 99999988875211111 1234567888898876443
No 64
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0092 Score=51.28 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=32.2
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++...+.-+.++=|.+||++|+|||-||+++.++-...
T Consensus 175 ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 175 ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 66666666778889999999999999999999887644
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.46 E-value=0.0063 Score=55.60 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=27.3
Q ss_pred HhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 106 SALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 106 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
....-..++-+.++|++|+|||++|+.+++.....
T Consensus 209 ~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 209 REYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 33333446679999999999999999999987543
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0023 Score=59.65 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=86.9
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD-------------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+++..+. .+.+.++|+.|+||||+|+.+.+...-. +.|...+.++.++......+ +
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddI-R 104 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDT-R 104 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHH-H
Confidence 5556666555 4577899999999999999988775321 11223444555444444443 3
Q ss_pred HHHHHhCCCcc----c--------ccchhhhhhc---cccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFH----E--------ESESGRANSL---FTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~----~--------~~~~~~~~~l---~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.++..+..... . .-+......+ .+....+.++|++|.+.. +..........+++++++.++...
T Consensus 105 eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k 184 (702)
T PRK14960 105 ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITK 184 (702)
T ss_pred HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHH
Confidence 44443311100 0 0011111112 224445667887776533 322222334578999999999999
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 260 (276)
.+.+.+...... --.+....|++.++|-+-.+.
T Consensus 185 ~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 185 HLGAILEKEQIA-ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 888877521111 112346678888888764443
No 67
>PTZ00202 tuzin; Provisional
Probab=97.44 E-value=0.0022 Score=56.93 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=41.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKF 172 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 172 (276)
..++++.|.|++|+|||||++.+..... + ...+++.. +..+++..++.+||.+.
T Consensus 284 ~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~LL~ALGV~p 337 (550)
T PTZ00202 284 AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSVVKALGVPN 337 (550)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHHHHHcCCCC
Confidence 3467999999999999999999986654 1 13333333 67999999999999743
No 68
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.44 E-value=0.0044 Score=51.97 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....+.++|++|+||||+|+.+.+...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999987753
No 69
>PRK08181 transposase; Validated
Probab=97.44 E-value=0.0026 Score=53.41 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
..-+.++|++|+|||+||..+.+....+ ...+.|+++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT 142 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH
Confidence 3469999999999999999999876544 234555554
No 70
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.43 E-value=0.0077 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-+.++|++|+|||++|+.+.......
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999998887776543
No 71
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.008 Score=53.93 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc-cCCCCCeEEEEEe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK-SDKLFDQVVFVEV 151 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 151 (276)
.+++.++|++|+||||++..+..... ... -..+..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEEC
Confidence 46899999999999999988877664 221 234555554
No 72
>PRK06620 hypothetical protein; Validated
Probab=97.39 E-value=0.00093 Score=54.24 Aligned_cols=132 Identities=17% Similarity=0.011 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC---Ccccccchhhhhhccc-cCC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL---KFHEESESGRANSLFT-HGH 189 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~---~~~~~~~~~~~~~l~~-~~~ 189 (276)
+.+-|+|++|+|||+|++.+.+.... .++. ...... ....+... +.-+.......-.+.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~~----~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e 111 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFNE----EILEKYNAFIIEDIENWQEPALLHIFNIINE 111 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhch----hHHhcCCEEEEeccccchHHHHHHHHHHHHh
Confidence 56899999999999999987766531 1111 000001 11111100 0000000001111111 224
Q ss_pred CCcEEEEEecccccccc------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 190 KGCKVLLTARSQDVLSG------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 190 ~gs~IivTTR~~~va~~------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
.|..||+|++...-.-. .+...-.+.++++++++-..++.+.+.... -.--+++..-|++++.|---.+
T Consensus 112 ~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 112 KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS-VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHH
Confidence 57789999875533110 122334789999999998888887765211 1122456777888777654433
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0019 Score=58.23 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=81.9
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-------------------eEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-------------------QVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-------------------~~~wv~~~~~~~~~~l~~ 162 (276)
.|...+..+.. +.+.++|+.|+||||+|+.+.+...-....+ ..+.++......... .+
T Consensus 29 ~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~-IR 107 (484)
T PRK14956 29 ALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIEN-IR 107 (484)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHH-HH
Confidence 45555666654 4579999999999999999988765321000 112222222222222 23
Q ss_pred HHHHHhCCCcc------------cccchhhhhhccc---cCCCCcEEEE-EeccccccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFH------------EESESGRANSLFT---HGHKGCKVLL-TARSQDVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~------------~~~~~~~~~~l~~---~~~~gs~Iiv-TTR~~~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+.+.+..... +.-.......+.+ .......+|+ ||....+..........|.+.+++.++..+
T Consensus 108 eL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~ 187 (484)
T PRK14956 108 ELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQD 187 (484)
T ss_pred HHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHH
Confidence 33333221100 0001111222222 3334455444 444444433333444578999999999988
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
.+.+.+...... --.+....|++.++|-|--+
T Consensus 188 ~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 188 YSEKLCKIENVQ-YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCChHHHH
Confidence 888876421111 11345678899999887443
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0032 Score=58.83 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=85.2
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccC------------------------CCCCeEEEEEecCcCCH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSD------------------------KLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------~~f~~~~wv~~~~~~~~ 157 (276)
.|.+.+..+.. +.+.++|..|+||||+|+.+.+...-. +.+...++++......+
T Consensus 27 ~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~V 106 (618)
T PRK14951 27 ALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGV 106 (618)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCH
Confidence 55666666554 566899999999999999986654311 01222344444444444
Q ss_pred HHHHHHHHHHhCCCcc----------c--ccchhhhhhccc---cCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCH
Q 041612 158 RKIQEEIGDKLGLKFH----------E--ESESGRANSLFT---HGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNE 221 (276)
Q Consensus 158 ~~l~~~i~~~l~~~~~----------~--~~~~~~~~~l~~---~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~ 221 (276)
..+ +++++.+..... + .-+....+.+.+ .....+++|++|.+ ..+..........++++.++.
T Consensus 107 d~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~ 185 (618)
T PRK14951 107 DEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAP 185 (618)
T ss_pred HHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCH
Confidence 443 344444321110 0 001111122222 34455666665543 434333333346789999999
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 222 EEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 222 ~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
++....+.+.+......- -.+....|++.++|-+--+..
T Consensus 186 eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 999988887764211111 123466788888886644433
No 75
>CHL00181 cbbX CbbX; Provisional
Probab=97.38 E-value=0.0061 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..+.++|++|+|||++|+.++.....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35888999999999999999887543
No 76
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0093 Score=52.14 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=46.1
Q ss_pred cCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHH
Q 041612 187 HGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIA 263 (276)
Q Consensus 187 ~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~ 263 (276)
.......+|++| +...+..........+++.+++.++..+++.+.......+ .+....++..++|.|.....+.
T Consensus 167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 333445555544 4333433333334589999999999999998753321111 2346788999999998665544
No 77
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.01 Score=52.18 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=47.4
Q ss_pred cCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHH
Q 041612 187 HGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIA 263 (276)
Q Consensus 187 ~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~ 263 (276)
....++.+|++|.+.+ +..........+.+.+++.++..+++...... ... .....++..++|.|+.+..+.
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 4445667777777654 33333344558999999999999999876431 111 112578899999998665443
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.004 Score=56.61 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=85.0
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhccc-------------------CCCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKS-------------------DKLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+.+..+.. +-+.++|+.|+||||+|+.+.....- ...+..++.++.++..+..++ +
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddI-R 102 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDI-K 102 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHH-H
Confidence 44444445554 47889999999999999998764311 011223455566555555554 3
Q ss_pred HHHHHhC-CCcc---------c--ccchh---hhhhccccCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLG-LKFH---------E--ESESG---RANSLFTHGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~-~~~~---------~--~~~~~---~~~~l~~~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+++... .+.. + .-... .+.+..+...+.+++|++|.+ ..+..........+.+.+++.++...
T Consensus 103 ~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~ 182 (491)
T PRK14964 103 VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVE 182 (491)
T ss_pred HHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHH
Confidence 4444331 1110 0 00111 112222245566777766633 33433223334578899999999998
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
.+.+.+...... --.+....|++.++|-+-.+
T Consensus 183 ~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 183 HLVDIAKKENIE-HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 888877521111 11234667888888876533
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.32 E-value=0.0096 Score=52.15 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=83.9
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~l~ 161 (276)
.+.+.+.... .+.+.++|++|+|||++|+.+....... .+++. .++.......... .
T Consensus 25 ~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~~~~~~~~~-~ 102 (355)
T TIGR02397 25 TLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDAASNNGVDD-I 102 (355)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeeccccCCHHH-H
Confidence 4444444444 3467889999999999999988775321 12333 3343332222222 2
Q ss_pred HHHHHHhCCCc----------cc--ccchhhhhhc---cccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGLKF----------HE--ESESGRANSL---FTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~~~----------~~--~~~~~~~~~l---~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
+.+.+.+.... ++ .-.......+ .....+.+.+|++|.+.. +..........+++.++++++..
T Consensus 103 ~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~ 182 (355)
T TIGR02397 103 REILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIV 182 (355)
T ss_pred HHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHH
Confidence 33433322110 00 0011111122 224445667677765443 22222222346788899999998
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHH
Q 041612 226 SLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIA 263 (276)
Q Consensus 226 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~ 263 (276)
..+...+...... --.+....++..++|-|..+....
T Consensus 183 ~~l~~~~~~~g~~-i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 183 ERLKKILDKEGIK-IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCChHHHHHHH
Confidence 8888776421111 112457788899999886554443
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0041 Score=57.12 Aligned_cols=156 Identities=12% Similarity=0.147 Sum_probs=86.5
Q ss_pred HHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDVN-MLGIYGMGGIGKTMLAEEIARKVKSD-------------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+.+..+..+ ...++|++|+||||+|+.+.+...-. +.|.-.+.+..++....+++ +
T Consensus 27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R 105 (509)
T PRK14958 27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-R 105 (509)
T ss_pred HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-H
Confidence 566666665544 56899999999999999988876422 11223455555555555554 4
Q ss_pred HHHHHhCCCccc------------ccchhhhh---hccccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKFHE------------ESESGRAN---SLFTHGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~~~------------~~~~~~~~---~l~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+++.+...... .-.....+ +..+.....+++|++|.+. .+..........+++.+++.++...
T Consensus 106 ~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~ 185 (509)
T PRK14958 106 ELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAA 185 (509)
T ss_pred HHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHH
Confidence 455543221110 00111111 2222445567777665443 3322222233468899999998887
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 260 (276)
.+.+.+......- -.+....|++.++|-|--+.
T Consensus 186 ~l~~il~~egi~~-~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 186 HCQHLLKEENVEF-ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHH
Confidence 7766654211111 12345678888888775443
No 81
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.012 Score=51.72 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=51.4
Q ss_pred HHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhC
Q 041612 105 LSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLG 169 (276)
Q Consensus 105 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 169 (276)
...+....+.-+.|+|.+|+|||+.++.++.+......=...++++.....+..+++..|+++++
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 33344455556999999999999999999999876521122788998889999999999999886
No 82
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0049 Score=56.93 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=83.8
Q ss_pred HHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDVN-MLGIYGMGGIGKTMLAEEIARKVKSD-------------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+.+..+... .+.++|++|+||||+|+.+.....-. +.|...+++..+.......+ +
T Consensus 27 ~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~i-r 105 (527)
T PRK14969 27 ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAM-R 105 (527)
T ss_pred HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHH-H
Confidence 445555555544 56899999999999999997776321 11223344544433344433 3
Q ss_pred HHHHHhCCC-cc-----------cccchhhhhhc---cccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLK-FH-----------EESESGRANSL---FTHGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~-~~-----------~~~~~~~~~~l---~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+++..... .. +.-.....+.+ .+.....+.+|++|.+. .+..........++++.++.++...
T Consensus 106 ~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~ 185 (527)
T PRK14969 106 ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVS 185 (527)
T ss_pred HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHH
Confidence 454433211 10 00011111122 22444556666665443 3321112223478899999999988
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcH-HHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPV-SIVTI 262 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~i 262 (276)
.+.+.+...... --.+....|++.++|.+- |+..+
T Consensus 186 ~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 186 HLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 887766411111 112345678888898764 44443
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0036 Score=55.82 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=80.2
Q ss_pred HHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHhcccCC----------------------------CCCeEEEEEecC
Q 041612 103 NILSALEDPDVN-MLGIYGMGGIGKTMLAEEIARKVKSDK----------------------------LFDQVVFVEVSQ 153 (276)
Q Consensus 103 ~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------------~f~~~~wv~~~~ 153 (276)
.|.+.+..+..+ .+.++|++|+||||+|+.+.+...-.. +++...+ ..+.
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~-~~~~ 105 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEF-DAAS 105 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEee-cccc
Confidence 455556655544 588999999999999999887764311 2222222 2222
Q ss_pred cCCHHHHHHHHHHHhCCCcc------------cccchhh---hhhccccCCCCcEEEEEe-ccccccccCCCCCCceeCC
Q 041612 154 NQDIRKIQEEIGDKLGLKFH------------EESESGR---ANSLFTHGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIG 217 (276)
Q Consensus 154 ~~~~~~l~~~i~~~l~~~~~------------~~~~~~~---~~~l~~~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~ 217 (276)
.....++ +++.+.+..... +.-.... ..+..+...+.+.+|++| +...+..........+++.
T Consensus 106 ~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~ 184 (397)
T PRK14955 106 NNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFK 184 (397)
T ss_pred cCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcC
Confidence 2223333 344444421110 0001111 112222444566666655 3333322211123468899
Q ss_pred CCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcH
Q 041612 218 VLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPV 257 (276)
Q Consensus 218 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 257 (276)
++++++....+...+..... .--.+.+..++..++|.+-
T Consensus 185 ~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 185 RIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 99999998888776631110 1112356788899998664
No 84
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.25 E-value=0.0054 Score=54.86 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=71.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH--------HHHHh---CCC-ccccc---c
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE--------IGDKL---GLK-FHEES---E 177 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~--------i~~~l---~~~-~~~~~---~ 177 (276)
...+.|+|.+|+|||+|++.+++....+..-..++|++...- ...+... +.+.+ ..- .++.. .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC
Confidence 356889999999999999999998765411124556653321 0111111 11111 000 00000 0
Q ss_pred h-hhhhhccc----cCCCCcEEEEEeccccc-ccc-------CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHH
Q 041612 178 S-GRANSLFT----HGHKGCKVLLTARSQDV-LSG-------KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSI 244 (276)
Q Consensus 178 ~-~~~~~l~~----~~~~gs~IivTTR~~~v-a~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 244 (276)
. .....+.. ....+..+|+||....- ... .+.....+.+++.+.++-..++.+.+...... --+++
T Consensus 214 ~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~-l~~e~ 292 (405)
T TIGR00362 214 KERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLE-LPDEV 292 (405)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHH
Confidence 0 00011111 11235568888764321 110 12223468899999999999998887521111 11345
Q ss_pred HHHHHHHcCCCcH
Q 041612 245 ARDVAKECAGLPV 257 (276)
Q Consensus 245 ~~~i~~~c~G~PL 257 (276)
..-|++.+.|.+-
T Consensus 293 l~~ia~~~~~~~r 305 (405)
T TIGR00362 293 LEFIAKNIRSNVR 305 (405)
T ss_pred HHHHHHhcCCCHH
Confidence 5566666665443
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.0048 Score=58.01 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=84.3
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC-------------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD-------------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+++..+. .+.+.++|+.|+||||+|+.+.+...-. +.|...+.++......... ++
T Consensus 27 ~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~-IR 105 (709)
T PRK08691 27 ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDN-IR 105 (709)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHH-HH
Confidence 5555566555 3467999999999999999987764321 1121223444444444433 33
Q ss_pred HHHHHhCC-----C-----ccc--ccchhhhhhccc---cCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGL-----K-----FHE--ESESGRANSLFT---HGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~-----~-----~~~--~~~~~~~~~l~~---~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+++.... . .++ .-+......+.+ .....+++|++|.+.. +..........+++..++.++...
T Consensus 106 elle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~ 185 (709)
T PRK08691 106 EVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVAD 185 (709)
T ss_pred HHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHH
Confidence 44432211 0 000 011111112222 3445667777765432 322222223467888999999999
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
.+.+.+...... --.+....|++.++|-+.-+..
T Consensus 186 ~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 186 HLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHHH
Confidence 888877521111 1123567888999888754433
No 86
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0091 Score=55.08 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.0
Q ss_pred hhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 107 ALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 107 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+.-+.++=|.++|+||+|||++|+.+.+.....
T Consensus 462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 3444567889999999999999999999998766
No 87
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0068 Score=56.84 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=81.2
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccC----------------------------CCCCeEEEEEecC
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSD----------------------------KLFDQVVFVEVSQ 153 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------------~~f~~~~wv~~~~ 153 (276)
.|.+.+..+.. +.+.++|+.|+||||+|+.+.+...-. .+|+...+ ....
T Consensus 27 ~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~-d~~s 105 (620)
T PRK14954 27 TIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEF-DAAS 105 (620)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEe-cccc
Confidence 45555555544 458899999999999999988776321 12332222 2222
Q ss_pred cCCHHHHHHHHHHHhCCCcc------------cccchhhhhhccc---cCCCCcEEEEEe-ccccccccCCCCCCceeCC
Q 041612 154 NQDIRKIQEEIGDKLGLKFH------------EESESGRANSLFT---HGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIG 217 (276)
Q Consensus 154 ~~~~~~l~~~i~~~l~~~~~------------~~~~~~~~~~l~~---~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~ 217 (276)
.....++. .+.+.+..... +.-.....+.+.+ .....+.+|++| +...+..........+++.
T Consensus 106 ~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~ 184 (620)
T PRK14954 106 NNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFK 184 (620)
T ss_pred cCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecC
Confidence 22333333 34444421100 0011111222222 333455555555 3333432223334578999
Q ss_pred CCCHHHHHHHHHHhhCC-C-CCChhHHHHHHHHHHHcCCCc-HHHHHH
Q 041612 218 VLNEEEAWSLFKKMAGD-Y-IEDSEFQSIARDVAKECAGLP-VSIVTI 262 (276)
Q Consensus 218 ~L~~~ea~~Lf~~~~~~-~-~~~~~~~~~~~~i~~~c~G~P-Lai~~i 262 (276)
+++.++....+.+.+.. . ..+ .+.+..|+..++|-+ .|+..+
T Consensus 185 ~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 185 RIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 99999988888776541 1 122 234677888888844 344433
No 88
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.21 E-value=0.00073 Score=53.16 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=22.2
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 109 EDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 109 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.....+.+.|+|.+|+|||+|.+.++......
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34457899999999999999999999888776
No 89
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.0065 Score=57.09 Aligned_cols=152 Identities=11% Similarity=0.160 Sum_probs=83.4
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcc---------------------cCCCCCeEEEEEecCcCCHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVK---------------------SDKLFDQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~f~~~~wv~~~~~~~~~~l 160 (276)
.|...+..+.. +.+.++|+.|+||||+|+.+..... ...+|+.. .++.++..+...+
T Consensus 28 ~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~ld~~~~~~vd~I 106 (614)
T PRK14971 28 TLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-ELDAASNNSVDDI 106 (614)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-EecccccCCHHHH
Confidence 55555655554 4578999999999999998877653 11245533 3344433344444
Q ss_pred HHHHHHHhCCCcc------------cccchhhhhhc---cccCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCHHHH
Q 041612 161 QEEIGDKLGLKFH------------EESESGRANSL---FTHGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNEEEA 224 (276)
Q Consensus 161 ~~~i~~~l~~~~~------------~~~~~~~~~~l---~~~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea 224 (276)
. .+++++..... +.-+......+ .+.....+.+|++| ....+..........+++.++++++.
T Consensus 107 r-~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei 185 (614)
T PRK14971 107 R-NLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADI 185 (614)
T ss_pred H-HHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHH
Confidence 3 33333321110 00111112222 22444556666554 44445433333456799999999999
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcH
Q 041612 225 WSLFKKMAGDYIEDSEFQSIARDVAKECAGLPV 257 (276)
Q Consensus 225 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 257 (276)
...+.+.+...... --.+.+..|+..++|-+-
T Consensus 186 ~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 186 VNHLQYVASKEGIT-AEPEALNVIAQKADGGMR 217 (614)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 98888766421111 112346678888887554
No 90
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.008 Score=58.19 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=82.3
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccC----------------------CCCCeEEEEEecCcCCHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSD----------------------KLFDQVVFVEVSQNQDIRK 159 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~f~~~~wv~~~~~~~~~~ 159 (276)
.|.+.+..+.+ +.+.++|..|+||||+|+.+.+.+.-. .+++ +++++......+.+
T Consensus 26 ~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eidaas~~~Vd~ 104 (824)
T PRK07764 26 PLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDAASHGGVDD 104 (824)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecccccCCHHH
Confidence 45555666554 457899999999999999998776421 1122 23444333333444
Q ss_pred HHHHHHHHhCCC----cc--------cccchhh---hhhccccCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHH
Q 041612 160 IQEEIGDKLGLK----FH--------EESESGR---ANSLFTHGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEE 223 (276)
Q Consensus 160 l~~~i~~~l~~~----~~--------~~~~~~~---~~~l~~~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~e 223 (276)
+ +.+.+.+... .. +.-.... +.+..+.....+.+|++|.+ ..+..........|.+..++.++
T Consensus 105 i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~ 183 (824)
T PRK07764 105 A-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEV 183 (824)
T ss_pred H-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHH
Confidence 3 2333322111 00 0011111 22222344456666665543 33433333345678999999999
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcH
Q 041612 224 AWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPV 257 (276)
Q Consensus 224 a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 257 (276)
....+.+.+...... --.+....|+..++|-+.
T Consensus 184 l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 184 MRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 988887765311111 112345678888888773
No 91
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.0096 Score=51.58 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=81.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEEec---CcCCHHHHHHHHHHHhC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVEVS---QNQDIRKIQEEIGDKLG 169 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~---~~~~~~~l~~~i~~~l~ 169 (276)
.+-+.++|+.|+|||++|..+....--. .|.| ..|+.-. +...++++ +++.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~i-R~l~~~~~ 99 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQV-RELVSFVV 99 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHH-HHHHHHHh
Confidence 5568899999999999999987775321 1333 2344221 22344444 33444443
Q ss_pred CCccc------------ccchhhhhhccc---cCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhC
Q 041612 170 LKFHE------------ESESGRANSLFT---HGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAG 233 (276)
Q Consensus 170 ~~~~~------------~~~~~~~~~l~~---~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 233 (276)
..... .-+....+.+.+ ..+.++.+|+||.+.. +......-...+.+.+++.+++.+.+.....
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~ 179 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP 179 (328)
T ss_pred hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc
Confidence 32111 111112222222 4446778888887754 3333333445789999999999988876532
Q ss_pred CCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 234 DYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 234 ~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
. .. .+.+..++..++|.|+.+..
T Consensus 180 ~-~~----~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 180 E-SD----ERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred c-CC----hHHHHHHHHHcCCCHHHHHH
Confidence 1 11 22345678899999975543
No 92
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.015 Score=51.23 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=81.3
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC------CCCCeE-EEEEecCcCCHHHHHHHHHHHhCC-Ccc
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD------KLFDQV-VFVEVSQNQDIRKIQEEIGDKLGL-KFH 173 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~~~l~~~i~~~l~~-~~~ 173 (276)
.+.+.+..+. .+.+.++|++|+|||++|+.+.+..... ..|... +-+......+...+ ..+.+.+.. +..
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l~~~~~~~p~~ 106 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNLIDQVRIPPQT 106 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHHHHHHhhcccc
Confidence 4555555544 4588899999999999999998876431 113222 22222222223333 333333221 100
Q ss_pred ---------c--ccchhhhhhc---cccCCCCcEEEEEec-cccccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCC
Q 041612 174 ---------E--ESESGRANSL---FTHGHKGCKVLLTAR-SQDVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIED 238 (276)
Q Consensus 174 ---------~--~~~~~~~~~l---~~~~~~gs~IivTTR-~~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 238 (276)
+ .-.......+ .......+.+|++|. ...+.........+++..++++++....+...+......
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 0 0011111122 123334455665553 333322222233478899999999988888766421110
Q ss_pred hhHHHHHHHHHHHcCCCcH-HHHHHHH
Q 041612 239 SEFQSIARDVAKECAGLPV-SIVTIAR 264 (276)
Q Consensus 239 ~~~~~~~~~i~~~c~G~PL-ai~~i~~ 264 (276)
-..+....++..++|-+- ++..+-.
T Consensus 187 -i~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 187 -FEDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred -CCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 112456778888887544 4444433
No 93
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.16 E-value=0.011 Score=54.45 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++-+.++|++|+|||+||+.+.+....
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456889999999999999999987643
No 94
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00056 Score=51.97 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKF 172 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 172 (276)
.+|.|.|++|+||||+|+.+.++..-. ..+...++++++...|.+.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~-------------~vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLK-------------LVSAGTIFREMARERGMSL 46 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCc-------------eeeccHHHHHHHHHcCCCH
Confidence 378999999999999999999988654 1244567778877777653
No 95
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.15 E-value=0.0061 Score=55.07 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=69.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-eEEEEEecCcCCHHHHHHHHHHHhC--------------CC---ccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-QVVFVEVSQNQDIRKIQEEIGDKLG--------------LK---FHE 174 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~~l~--------------~~---~~~ 174 (276)
..-+.|+|.+|+|||+|++.+.+...... ++ .++|++... ++..+...+. .+ .++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~------f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDD 202 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEK------FLNDLVDSMKEGKLNEFREKYRKKVDVLLIDD 202 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHH------HHHHHHHHHhcccHHHHHHHHHhcCCEEEEec
Confidence 44699999999999999999999876541 33 456665432 2222222111 00 000
Q ss_pred cc---c-hhhhhhccc----cCCCCcEEEEEecc-ccccc----c---CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCC
Q 041612 175 ES---E-SGRANSLFT----HGHKGCKVLLTARS-QDVLS----G---KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIED 238 (276)
Q Consensus 175 ~~---~-~~~~~~l~~----~~~~gs~IivTTR~-~~va~----~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 238 (276)
.. . ......++. ....|..||+||.. ..-.. . .+.......+++.+.+.-..++.+.+......
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~ 282 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGE 282 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCC
Confidence 00 0 000011111 22335578888753 22111 1 12334477899999999999998887521110
Q ss_pred hhHHHHHHHHHHHcCC
Q 041612 239 SEFQSIARDVAKECAG 254 (276)
Q Consensus 239 ~~~~~~~~~i~~~c~G 254 (276)
--+++..-|++.+.|
T Consensus 283 -l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 283 -LPEEVLNFVAENVDD 297 (440)
T ss_pred -CCHHHHHHHHhcccc
Confidence 112345555555544
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0084 Score=56.06 Aligned_cols=158 Identities=13% Similarity=0.160 Sum_probs=86.4
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCCC------------------------CCeEEEEEecCcCCH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDKL------------------------FDQVVFVEVSQNQDI 157 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------------f~~~~wv~~~~~~~~ 157 (276)
.|.+.+..+. .+-+.++|+.|+||||+|+.+.+...-... ..-++++...+...+
T Consensus 35 ~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gv 114 (598)
T PRK09111 35 TLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGV 114 (598)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCH
Confidence 5555555554 446889999999999999999887542210 011234443433344
Q ss_pred HHHHHHHHHHhCCCcc----------c--ccchhh---hhhccccCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCH
Q 041612 158 RKIQEEIGDKLGLKFH----------E--ESESGR---ANSLFTHGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNE 221 (276)
Q Consensus 158 ~~l~~~i~~~l~~~~~----------~--~~~~~~---~~~l~~~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~ 221 (276)
.++ ++|++.+..... + .-+... +.+..+.....+.+|++| ....+..........+.+..++.
T Consensus 115 d~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~ 193 (598)
T PRK09111 115 DDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEA 193 (598)
T ss_pred HHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCH
Confidence 443 345444321110 0 001111 112222445566776655 33434333233345788999999
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 222 EEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 222 ~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
++....+.+.+...... --.+....|+..++|-+.-+...
T Consensus 194 ~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 194 DVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99998888876411110 11245677888899887655443
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.011 Score=55.01 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=83.3
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~l~ 161 (276)
.+.+.+..+. .+.+.++|+.|+||||+|+.+.....-. .|.+ .++++.+.......+
T Consensus 27 ~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D-iieIdaas~igVd~I- 104 (605)
T PRK05896 27 ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD-IVELDAASNNGVDEI- 104 (605)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc-eEEeccccccCHHHH-
Confidence 4444454443 4568899999999999999998775321 1122 344443333333333
Q ss_pred HHHHHHhCCCcc----------c--ccchhhhhhccc---cCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGLKFH----------E--ESESGRANSLFT---HGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~~~~----------~--~~~~~~~~~l~~---~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
+.+.+.+..... + .-.......+.+ ..+..+.+|++| ....+..........+++.++++++..
T Consensus 105 ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~ 184 (605)
T PRK05896 105 RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQ 184 (605)
T ss_pred HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHH
Confidence 333332221100 0 001111122222 333455555554 333332222233457899999999999
Q ss_pred HHHHHhhCC-C-CCChhHHHHHHHHHHHcCCCc-HHHHHHHH
Q 041612 226 SLFKKMAGD-Y-IEDSEFQSIARDVAKECAGLP-VSIVTIAR 264 (276)
Q Consensus 226 ~Lf~~~~~~-~-~~~~~~~~~~~~i~~~c~G~P-Lai~~i~~ 264 (276)
..+...+.. . ..+ .+.+..++..++|-| .|+..+-.
T Consensus 185 ~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 185 ELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 888887642 1 122 234667888898855 45555444
No 98
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.10 E-value=0.00084 Score=52.69 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=29.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEE
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFV 149 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 149 (276)
...+|.+.|++|+||||+|+.++...... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 35689999999999999999999988654 5555555
No 99
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00082 Score=51.09 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
...|.|.|++|+||||+++.+.+..+.++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 45799999999999999999998887663
No 100
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.08 E-value=0.0005 Score=50.63 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~ 137 (276)
|.|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998885
No 101
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.00074 Score=54.80 Aligned_cols=35 Identities=37% Similarity=0.479 Sum_probs=28.3
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+++..+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455556666789999999999999999998875
No 102
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.07 E-value=0.0031 Score=57.21 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=71.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH--------HHHHhCCC----cccc---cc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE--------IGDKLGLK----FHEE---SE 177 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~--------i~~~l~~~----~~~~---~~ 177 (276)
..-+.|+|.+|+|||+|++.+.+....+..--.++|++...- ...+... +.+.+... .++. ..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC
Confidence 356899999999999999999999865421123556554321 1111111 11111100 0000 00
Q ss_pred -hhhhhhccc----cCCCCcEEEEEecccccc--------ccCCCCCCceeCCCCCHHHHHHHHHHhhCC--CCCChhHH
Q 041612 178 -SGRANSLFT----HGHKGCKVLLTARSQDVL--------SGKMDSRPNFSIGVLNEEEAWSLFKKMAGD--YIEDSEFQ 242 (276)
Q Consensus 178 -~~~~~~l~~----~~~~gs~IivTTR~~~va--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~ 242 (276)
......++. ....|..||+||....-. ...+.....+.+++.+.++-..++.+.+.. ...+ +
T Consensus 226 ~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~---~ 302 (450)
T PRK00149 226 KERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP---D 302 (450)
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC---H
Confidence 000111111 122355688887653210 012333457889999999999999888752 1122 2
Q ss_pred HHHHHHHHHcCCCc
Q 041612 243 SIARDVAKECAGLP 256 (276)
Q Consensus 243 ~~~~~i~~~c~G~P 256 (276)
++..-|+..+.|-.
T Consensus 303 e~l~~ia~~~~~~~ 316 (450)
T PRK00149 303 EVLEFIAKNITSNV 316 (450)
T ss_pred HHHHHHHcCcCCCH
Confidence 34555555555443
No 103
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.024 Score=49.75 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=40.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc-CCHHHHHHHHHHHhCCCcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN-QDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~ 173 (276)
..+++.++|+.|+||||++..+......++ ..+.+++.... .....-++...+.++.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~ 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELI 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEE
Confidence 477999999999999999999987765442 34566665432 2234455666676766543
No 104
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.05 E-value=0.00057 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
|.|+|++|+|||++|+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999999985
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.012 Score=55.00 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=86.9
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCC--------------------CCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDK--------------------LFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~l~ 161 (276)
.|.+.+..+. .+.+.++|+.|+||||+|+.+.+...-.. |.+ ++++.......+..+
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~eId~a~~~~Id~i- 104 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD-VVEIDGASNRGIDDA- 104 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-eEEEecccccCHHHH-
Confidence 3444444444 56788899999999999999988774321 112 334433323333332
Q ss_pred HHHHHHhCCCc----------cc--ccchhhhhhccc---cCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGLKF----------HE--ESESGRANSLFT---HGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~~~----------~~--~~~~~~~~~l~~---~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
+.+.+.+.... ++ .-.......+.+ .......+|++|.+ ..+..........+++++++.++..
T Consensus 105 R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~ 184 (624)
T PRK14959 105 KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLE 184 (624)
T ss_pred HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHH
Confidence 23333322110 00 011111122222 23345556665544 3333222223347889999999999
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHcCCC-cHHHHHHHHHHh
Q 041612 226 SLFKKMAGDYIEDSEFQSIARDVAKECAGL-PVSIVTIARALR 267 (276)
Q Consensus 226 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~i~~~L~ 267 (276)
..+...+..... .-..+....|++.++|- -.|+..+..++.
T Consensus 185 ~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 185 AHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888876642111 01123567788888885 467777765543
No 106
>PRK06547 hypothetical protein; Provisional
Probab=97.05 E-value=0.00083 Score=52.56 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=27.6
Q ss_pred HhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 106 SALEDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 106 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+....+.+|+|.|.+|+||||+|+.+.....
T Consensus 8 ~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 8 ARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334566788999999999999999999988754
No 107
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.04 E-value=0.0006 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+|+|.|.+|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 108
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.04 E-value=0.011 Score=53.23 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=37.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~ 171 (276)
.+.+|.++|.+|+||||.+..+......++ + .+..++... .+...+.++.+.++++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 477999999999999999999988776542 2 333333321 122234455556665554
No 109
>PRK14974 cell division protein FtsY; Provisional
Probab=97.03 E-value=0.012 Score=51.07 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=37.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC--CHHHHHHHHHHHhCCCc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ--DIRKIQEEIGDKLGLKF 172 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~~ 172 (276)
++.+|.++|++|+||||++..+.......+ + .+..+.. ..+ ....-++.....++.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-F-SVVIAAG-DTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-eEEEecC-CcCcHHHHHHHHHHHHHcCCce
Confidence 478999999999999998888887766542 3 2333332 222 22334556677777654
No 110
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.039 Score=50.16 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=36.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCCc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLKF 172 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~ 172 (276)
..+++++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 47999999999999999999988764331112344444322 1123334455556665543
No 111
>PRK08233 hypothetical protein; Provisional
Probab=97.01 E-value=0.00065 Score=53.43 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|+|.|.+|+||||||..+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 112
>PRK06762 hypothetical protein; Provisional
Probab=97.01 E-value=0.00065 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.+|.|+|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998776
No 113
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.00 E-value=0.00074 Score=54.61 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+..+|+|.|.+|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 114
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.00 E-value=0.0017 Score=48.71 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=30.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHH
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 161 (276)
|.++|.+|+|||+||+.++..... ...-+.+++..+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccce
Confidence 678999999999999999988832 24445666666666654
No 115
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.00 E-value=0.0052 Score=56.01 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++-|.++|++|+|||.+|+.+.+....
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3567899999999999999999988754
No 116
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.99 E-value=0.00074 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986654
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.031 Score=51.48 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=84.6
Q ss_pred HHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHhcccCCC------------------CC-eEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPDVN-MLGIYGMGGIGKTMLAEEIARKVKSDKL------------------FD-QVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~-~~~wv~~~~~~~~~~l~~ 162 (276)
.|...+..+... ...++|+.|+||||+|+.+....-.... +. .++.+..........+.
T Consensus 25 ~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IR- 103 (535)
T PRK08451 25 TLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIR- 103 (535)
T ss_pred HHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHH-
Confidence 555555555544 5689999999999999988877532110 11 12333333222344443
Q ss_pred HHHHHhC-CCcc-----------cccchhhhhhcc---ccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLG-LKFH-----------EESESGRANSLF---THGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~-~~~~-----------~~~~~~~~~~l~---~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.++.... .+.. +.-.......+. ...++.+++|++|.+. .+..........+++.+++.++...
T Consensus 104 elie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~ 183 (535)
T PRK08451 104 ELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIIS 183 (535)
T ss_pred HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHH
Confidence 3333321 1100 011111112222 2445667777777553 2222222334578999999999988
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
.+.+.+...... --.+....|+..++|-+--+..+
T Consensus 184 ~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 184 HLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHH
Confidence 888776421111 11245677888888887444433
No 118
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.97 E-value=0.0078 Score=58.03 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..++-+.++|++|+|||+||+.+.+....
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~ 513 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGA 513 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34566899999999999999999988754
No 119
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.093 Score=46.91 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCCcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~ 173 (276)
...+++++|+.|+||||+...+............+..+.... .....+-+....+.++.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~ 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee
Confidence 357999999999999999998877543221123333333222 12233334455556665543
No 120
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0042 Score=54.87 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=66.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHH----------HhCCCcccc-----c
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGD----------KLGLKFHEE-----S 176 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~----------~l~~~~~~~-----~ 176 (276)
....+-|+|..|.|||+|++.+.+..... ......++++...-...+...+.+ ++..-..++ .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 36789999999999999999999998765 332333333333222222222222 111100000 0
Q ss_pred chhhhhhccc----cCCCCcEEEEEecccccccc--------CCCCCCceeCCCCCHHHHHHHHHHhhC
Q 041612 177 ESGRANSLFT----HGHKGCKVLLTARSQDVLSG--------KMDSRPNFSIGVLNEEEAWSLFKKMAG 233 (276)
Q Consensus 177 ~~~~~~~l~~----~~~~gs~IivTTR~~~va~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 233 (276)
.......++. ....|..||+|++...-.-. .+...-.+.+++++.+....++.+.+.
T Consensus 190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 0000111222 23344489999865432111 123345789999999999999988664
No 121
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.95 E-value=0.0012 Score=48.89 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
..+.|+|++|+||||+++.+........ ...++++.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCE
Confidence 5789999999999999999998887652 235555444
No 122
>PTZ00301 uridine kinase; Provisional
Probab=96.94 E-value=0.00081 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999998877653
No 123
>PRK06696 uridine kinase; Validated
Probab=96.94 E-value=0.0012 Score=54.01 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+.+.+|+|.|.+|+||||||+.+......
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999999988753
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.94 E-value=0.0076 Score=51.93 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=27.0
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+..++.... +..+.++|++|+|||++|+.+++...
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 4555555544 45666699999999999999988763
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.018 Score=53.62 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=83.9
Q ss_pred HHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHhcccC----------------------CCCCeEEEEEecCcCCHHH
Q 041612 103 NILSALEDPDVN-MLGIYGMGGIGKTMLAEEIARKVKSD----------------------KLFDQVVFVEVSQNQDIRK 159 (276)
Q Consensus 103 ~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~f~~~~wv~~~~~~~~~~ 159 (276)
.|.+.+..+... ...++|+.|+||||+|+.+.....-. .+++ ++.+..++...+..
T Consensus 24 ~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-vieidaas~~gvd~ 102 (584)
T PRK14952 24 PLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVELDAASHGGVDD 102 (584)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEEeccccccCHHH
Confidence 556666665544 46899999999999999998775421 1112 33444433334444
Q ss_pred HHHHHHHHhCCCc----c------c--ccchhhhhhc---cccCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCHHH
Q 041612 160 IQEEIGDKLGLKF----H------E--ESESGRANSL---FTHGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNEEE 223 (276)
Q Consensus 160 l~~~i~~~l~~~~----~------~--~~~~~~~~~l---~~~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~e 223 (276)
+ ++|.+.+.... . + .-.....+.+ .+.......+|++| ....+..........+++..++.++
T Consensus 103 i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~ 181 (584)
T PRK14952 103 T-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRT 181 (584)
T ss_pred H-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHH
Confidence 3 33433321110 0 0 0011111222 22444455555544 4444433222334578999999999
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcH-HHHHHHH
Q 041612 224 AWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPV-SIVTIAR 264 (276)
Q Consensus 224 a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~i~~ 264 (276)
..+.+.+.+...... --.+....|+..++|-+- |+..+-.
T Consensus 182 i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 182 MRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 988887766421111 112345667888888663 4444433
No 126
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.93 E-value=0.00093 Score=53.95 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+...+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999988764
No 127
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.92 E-value=0.0009 Score=43.82 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+|.|.|.+|+||||+++.+....
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.92 E-value=0.017 Score=52.29 Aligned_cols=112 Identities=15% Similarity=0.275 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC-----------C----c-ccc--
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL-----------K----F-HEE-- 175 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~-----------~----~-~~~-- 175 (276)
.-+.|+|++|+|||+|++.+.+..... .-.+++++.. .+...+...+.. . . ++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~------~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~ 213 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSE------LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEV 213 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHH------HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhh
Confidence 568899999999999999999987643 2334555432 111111111110 0 0 000
Q ss_pred -cc-hhhhhhccc----cCCCCcEEEEEecccc-----cccc---CCCCCCceeCCCCCHHHHHHHHHHhhC
Q 041612 176 -SE-SGRANSLFT----HGHKGCKVLLTARSQD-----VLSG---KMDSRPNFSIGVLNEEEAWSLFKKMAG 233 (276)
Q Consensus 176 -~~-~~~~~~l~~----~~~~gs~IivTTR~~~-----va~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 233 (276)
.. ......++. ....|..||+||.... +... .+.....+.+++++.++-..++.+.+.
T Consensus 214 l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 214 FSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred hcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 00 000111111 1124567888885421 1111 123345788999999999999988764
No 129
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.91 E-value=0.0095 Score=55.39 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=63.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH--------HH---HHhCCCc-cc---ccc-
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE--------IG---DKLGLKF-HE---ESE- 177 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~--------i~---~~l~~~~-~~---~~~- 177 (276)
..+.|+|..|+|||+|+..+.+.......--.++|++...-. ..+... +. .....-. ++ ...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~--~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT--NEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC
Confidence 458999999999999999999987543111245566543211 011111 11 1110000 00 000
Q ss_pred hhhhhhccc----cCCCCcEEEEEecccc-----ccc---cCCCCCCceeCCCCCHHHHHHHHHHhhC
Q 041612 178 SGRANSLFT----HGHKGCKVLLTARSQD-----VLS---GKMDSRPNFSIGVLNEEEAWSLFKKMAG 233 (276)
Q Consensus 178 ~~~~~~l~~----~~~~gs~IivTTR~~~-----va~---~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 233 (276)
......++. ....|..|||||.... +.. ..+...-.+.++..+.+.-..++.+.+.
T Consensus 393 e~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 393 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 000111111 2234567888887531 101 1233445789999999999999988774
No 130
>PRK03839 putative kinase; Provisional
Probab=96.89 E-value=0.00091 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.|.|.|++|+||||+++.+.+....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988754
No 131
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.88 E-value=0.015 Score=50.07 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+++++|++|+||||++..+......+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999998887654
No 132
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.039 Score=52.74 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=38.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCCcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~ 173 (276)
..+++++|+.|+||||.+..+............+..++... .....+-++...+.++.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc
Confidence 46999999999999999999887764321112444444322 11234555666677776544
No 133
>PRK08116 hypothetical protein; Validated
Probab=96.86 E-value=0.0014 Score=55.05 Aligned_cols=36 Identities=36% Similarity=0.391 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
.-+.++|.+|+|||+||..+++....+ -..++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH
Confidence 358899999999999999999998654 334566654
No 134
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.84 E-value=0.0011 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 135
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.047 Score=48.36 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=38.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCC--CCCeEEEEEecCc-CCHHHHHHHHHHHhCCCcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDK--LFDQVVFVEVSQN-QDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~ 173 (276)
.++++.++|+.|+||||.+..+........ .-..+..++.... .....-++..++.++.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~ 237 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK 237 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE
Confidence 467999999999999999998887765321 1124444544321 1223335666666666543
No 136
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0084 Score=55.91 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.-++++.+|++|+|||++|+.|......+
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCc
Confidence 46799999999999999999999888654
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.044 Score=50.12 Aligned_cols=158 Identities=14% Similarity=0.172 Sum_probs=80.2
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhccc---C----------------CCCCeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKS---D----------------KLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~---~----------------~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
.|.+.+..+. .+...++|+.|+||||+|+.+...... . ..|...+.+..++......+ +
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~i-r 105 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDI-R 105 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHH-H
Confidence 5555555544 345678999999999999998876531 0 01222344444333333322 2
Q ss_pred HHHHHhCCC-cc---------c--ccchhhhhhc---cccCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLK-FH---------E--ESESGRANSL---FTHGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~-~~---------~--~~~~~~~~~l---~~~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.+.+.+... .. + .-.......+ ....++...+|++| +...+..........+.+.+++.++...
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~ 185 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKE 185 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHH
Confidence 333332211 00 0 0011111112 22334455555555 3333322212223468899999999888
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
.+.+.+...... --.+....|+..++|.+..+...
T Consensus 186 ~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 186 YLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 888766421111 11234667888888876544433
No 138
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.037 Score=48.07 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=70.8
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~l~ 161 (276)
.|.+.+..++ .+...++|+.|+|||++|..+....--. .|.|..+...-+.....+++.
T Consensus 17 ~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir 96 (329)
T PRK08058 17 MLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIR 96 (329)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHH
Confidence 4444444444 4566899999999999999987765321 144443332223333444443
Q ss_pred HHHHHHhCCCcc------------cccchhhhhhc---cccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGLKFH------------EESESGRANSL---FTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~~~~------------~~~~~~~~~~l---~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
.+.+.+..... +.-+....+.+ .+..+.++.+|++|.+.. +..........+++.++++++..
T Consensus 97 -~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~ 175 (329)
T PRK08058 97 -YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLI 175 (329)
T ss_pred -HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHH
Confidence 33343332111 11111112222 225566777787776543 33333344557899999999988
Q ss_pred HHHHHh
Q 041612 226 SLFKKM 231 (276)
Q Consensus 226 ~Lf~~~ 231 (276)
+.+...
T Consensus 176 ~~L~~~ 181 (329)
T PRK08058 176 QRLQEE 181 (329)
T ss_pred HHHHHc
Confidence 777654
No 139
>PRK04040 adenylate kinase; Provisional
Probab=96.78 E-value=0.0013 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+++|+|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988874
No 140
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.78 E-value=0.0025 Score=48.80 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEE
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVE 150 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 150 (276)
..+|-|.|.+|+||||||+.+....... -..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 3589999999999999999999999876 34455553
No 141
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.77 E-value=0.0036 Score=50.53 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 162 (276)
-.++.|+|.+|+|||+++.++....... -..++|++... .+...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 5689999999999999999988776543 46788998865 55555443
No 142
>CHL00176 ftsH cell division protein; Validated
Probab=96.77 E-value=0.044 Score=51.73 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++-+.++|++|+|||+||+.+.+...
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999988764
No 143
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.055 Score=50.82 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=82.4
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCC---------------------CCCeEEEEEecCcCCHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDK---------------------LFDQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~~~~wv~~~~~~~~~~l 160 (276)
.|...+..+. .+.+.++|+.|+||||+|+.+........ |++ .+.+..+.......+
T Consensus 27 ~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d-~~~i~~~~~~~vd~i 105 (585)
T PRK14950 27 TLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD-VIEMDAASHTSVDDA 105 (585)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe-EEEEeccccCCHHHH
Confidence 4444444444 34568999999999999999987753211 111 233333233333333
Q ss_pred HHHHHHHhCCCcc------------cccchhhhhhccc---cCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHH
Q 041612 161 QEEIGDKLGLKFH------------EESESGRANSLFT---HGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEA 224 (276)
Q Consensus 161 ~~~i~~~l~~~~~------------~~~~~~~~~~l~~---~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea 224 (276)
++|.+.+..... +.-.....+.+.+ .....+.+|++|.+ ..+..........+.+..++.++.
T Consensus 106 -r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el 184 (585)
T PRK14950 106 -REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADM 184 (585)
T ss_pred -HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHH
Confidence 444444322110 0001111122222 33455666666643 333222222234678889999998
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 225 WSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 225 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
...+.+.+...... --.+....|+..++|.+..+..
T Consensus 185 ~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 185 AAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 88888776521111 1124577888999998864443
No 144
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.043 Score=49.79 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=80.3
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccC---------------------CCCCeEEEEEecCcCCHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSD---------------------KLFDQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~~~~wv~~~~~~~~~~l 160 (276)
.|.+.+..+.. +...++|++|+||||+|+.+....... .+++. +++..........+
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i~g~~~~gid~i 106 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEIDGASHRGIEDI 106 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEeeccccCCHHHH
Confidence 44455555543 567889999999999999988765321 12232 22222222223332
Q ss_pred HHHHHHHhCCC---c-------cc--ccchhh---hhhccccCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHH
Q 041612 161 QEEIGDKLGLK---F-------HE--ESESGR---ANSLFTHGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEA 224 (276)
Q Consensus 161 ~~~i~~~l~~~---~-------~~--~~~~~~---~~~l~~~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea 224 (276)
+.+.+.+... . ++ .-.... +.+..........+|++|.+ ..+..........++++++++++.
T Consensus 107 -r~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el 185 (451)
T PRK06305 107 -RQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETI 185 (451)
T ss_pred -HHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHH
Confidence 2333332211 0 00 001111 11222244446667666633 333222222345789999999999
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHcCCCc-HHHHHH
Q 041612 225 WSLFKKMAGDYIEDSEFQSIARDVAKECAGLP-VSIVTI 262 (276)
Q Consensus 225 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~i 262 (276)
...+...+..... .--.+.+..|+..++|-+ .|+..+
T Consensus 186 ~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 186 IDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888776541111 011234667888888855 444443
No 145
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.057 Score=46.63 Aligned_cols=150 Identities=14% Similarity=0.137 Sum_probs=83.9
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEE-ecCcCCHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVE-VSQNQDIRKI 160 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~-~~~~~~~~~l 160 (276)
.+.+.+..+. .+-..+.|+.|+||+++|+.+....--. .|.|....-. -+....++++
T Consensus 13 ~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~i 92 (325)
T PRK06871 13 QITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQV 92 (325)
T ss_pred HHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHH
Confidence 4555555544 4677789999999999999987665321 2333222211 1122234443
Q ss_pred HHHHHHHhCCCccc------------ccchhh---hhhccccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHH
Q 041612 161 QEEIGDKLGLKFHE------------ESESGR---ANSLFTHGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEA 224 (276)
Q Consensus 161 ~~~i~~~l~~~~~~------------~~~~~~---~~~l~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea 224 (276)
+.+.+.+...... .-+... +.+..+..++++.+|++|.+. .+......-...+.+.++++++.
T Consensus 93 -R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~ 171 (325)
T PRK06871 93 -REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQA 171 (325)
T ss_pred -HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHH
Confidence 3444444322111 011111 222222566677777777765 34333333455789999999999
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 225 WSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 225 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
.+.+...... .. ..+...+..++|.|+.+
T Consensus 172 ~~~L~~~~~~---~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 172 LDWLQAQSSA---EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHhcc---Ch---HHHHHHHHHcCCCHHHH
Confidence 9888776421 11 12456678889988643
No 146
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.74 E-value=0.059 Score=52.15 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC---CCCC--eEEEEEecCcCCHHHHHHHHHHHh
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD---KLFD--QVVFVEVSQNQDIRKIQEEIGDKL 168 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~--~~~wv~~~~~~~~~~l~~~i~~~l 168 (276)
.++-|+|++|+|||+.++.+....... .... ..+++......+...+...|.+++
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL 841 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQL 841 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHH
Confidence 466799999999999999998876432 1122 245666555556677777777666
No 147
>PRK10867 signal recognition particle protein; Provisional
Probab=96.73 E-value=0.018 Score=51.61 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+.+|.++|.+|+||||.+..+......+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 47899999999999999888877665443
No 148
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.73 E-value=0.0042 Score=49.68 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=43.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCCcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~ 173 (276)
++++.++|+.|+||||.+-++......+ -..+..++... .....+-++..++.++.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~ 60 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFY 60 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccc
Confidence 4789999999999999888888877655 34566666543 23456667788888887754
No 149
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.04 Score=52.38 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=80.4
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCC-----------------CCCeEEEEEecCcCCHHHHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDK-----------------LFDQVVFVEVSQNQDIRKIQEEI 164 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~l~~~i 164 (276)
.|...+..+. .+...++|+.|+||||+|+.+....-... +++ ++++...+...... .+.+
T Consensus 29 ~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn~~vd~-IReL 106 (725)
T PRK07133 29 TLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASNNGVDE-IREL 106 (725)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccccCCHHH-HHHH
Confidence 4555555544 45678999999999999999877653211 111 22333222223333 2344
Q ss_pred HHHhCCCcc----------c--ccchhhhhhccc---cCCCCcEEEE-EeccccccccCCCCCCceeCCCCCHHHHHHHH
Q 041612 165 GDKLGLKFH----------E--ESESGRANSLFT---HGHKGCKVLL-TARSQDVLSGKMDSRPNFSIGVLNEEEAWSLF 228 (276)
Q Consensus 165 ~~~l~~~~~----------~--~~~~~~~~~l~~---~~~~gs~Iiv-TTR~~~va~~~~~~~~~~~l~~L~~~ea~~Lf 228 (276)
.+.+..... + .-.......+.+ ..+....+|+ ||....+..........+++.+++.++....+
T Consensus 107 ie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L 186 (725)
T PRK07133 107 IENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRL 186 (725)
T ss_pred HHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHH
Confidence 433321110 0 000111122222 3334455454 44444443332333457899999999998888
Q ss_pred HHhhCCCCCChhHHHHHHHHHHHcCCCcH-HHHHH
Q 041612 229 KKMAGDYIEDSEFQSIARDVAKECAGLPV-SIVTI 262 (276)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~i 262 (276)
...+...... --.+.+..|+..++|-+- |+..+
T Consensus 187 ~~il~kegI~-id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 187 EFILEKENIS-YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7765311111 112346678888888654 44433
No 150
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.058 Score=49.71 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=31.8
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++...+.-+-+.=|.++|++|+|||-||+++.|....+
T Consensus 535 d~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 535 DLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred HHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 55566666667779999999999999999999998766
No 151
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.71 E-value=0.0017 Score=50.53 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....|.++|++|+||||+|+.+.....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998874
No 152
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.71 E-value=0.0093 Score=50.19 Aligned_cols=152 Identities=22% Similarity=0.220 Sum_probs=80.7
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeE-EEEEecCcCCHHHHHHHH--HHHh--------CCC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQV-VFVEVSQNQDIRKIQEEI--GDKL--------GLK 171 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~~~~l~~~i--~~~l--------~~~ 171 (276)
-|.+.+.....+....+|++|.|||+-|+.+....-..+.|.+. .=.++|......-+-..+ ..++ +.+
T Consensus 47 ~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~ 126 (346)
T KOG0989|consen 47 VLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYP 126 (346)
T ss_pred HHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCC
Confidence 44455555667889999999999999999988887665556543 334444332221111111 0111 111
Q ss_pred ccc-------c---cchhhhhhccc---cCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCC
Q 041612 172 FHE-------E---SESGRANSLFT---HGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIE 237 (276)
Q Consensus 172 ~~~-------~---~~~~~~~~l~~---~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 237 (276)
.+. + -..+.+..+++ .....++.|+.|-.-+ +.........-++.++|.+++..+-+..++.....
T Consensus 127 ~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v 206 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV 206 (346)
T ss_pred CCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC
Confidence 000 0 00111222222 4445555554443322 21111222335788999999999999888862221
Q ss_pred ChhHHHHHHHHHHHcCCC
Q 041612 238 DSEFQSIARDVAKECAGL 255 (276)
Q Consensus 238 ~~~~~~~~~~i~~~c~G~ 255 (276)
+- -.+..+.|++.++|-
T Consensus 207 ~~-d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 207 DI-DDDALKLIAKISDGD 223 (346)
T ss_pred CC-CHHHHHHHHHHcCCc
Confidence 11 124567888888774
No 153
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0023 Score=59.45 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=36.7
Q ss_pred HHhhhhhhhhhhccccchHHHHHhh------cCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 84 AADNFTKDEATTNKRCFKGNILSAL------EDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 84 ~~ed~ld~~~~~~~~~~~~~l~~~L------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.|+.++|...|.... ...+++++| ..-+-++++++|+||+|||+|++.|.......
T Consensus 316 ~a~~iLd~dHYGLek-VKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk 377 (782)
T COG0466 316 KAEKILDKDHYGLEK-VKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK 377 (782)
T ss_pred HHHHHhcccccCchh-HHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC
Confidence 344555554443211 111444444 23345799999999999999999999988655
No 154
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.028 Score=53.26 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=81.7
Q ss_pred HHHHhhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc-----------CCHHHHHH
Q 041612 103 NILSALEDPD---------VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN-----------QDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----------~~~~~l~~ 162 (276)
+++.+|.+++ ++=+.++|++|+|||-||++++....+- | ++++.. ....+++.
T Consensus 325 E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--F-----~svSGSEFvE~~~g~~asrvr~lf~ 397 (774)
T KOG0731|consen 325 EFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--F-----FSVSGSEFVEMFVGVGASRVRDLFP 397 (774)
T ss_pred HHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--e-----eeechHHHHHHhcccchHHHHHHHH
Confidence 7777777642 6778999999999999999999887654 3 222221 11122221
Q ss_pred HHH------------HHhCCCc-------ccccchhhhhhccc----cCCCCcEEE-EEecccccccc-CC---CCCCce
Q 041612 163 EIG------------DKLGLKF-------HEESESGRANSLFT----HGHKGCKVL-LTARSQDVLSG-KM---DSRPNF 214 (276)
Q Consensus 163 ~i~------------~~l~~~~-------~~~~~~~~~~~l~~----~~~~gs~Ii-vTTR~~~va~~-~~---~~~~~~ 214 (276)
.-- +.++... .+......++++.. ....+.-|+ -+|...++.+. .+ ..+..+
T Consensus 398 ~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i 477 (774)
T KOG0731|consen 398 LARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQI 477 (774)
T ss_pred HhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccce
Confidence 110 1111111 00111112222222 222222233 34555555443 12 233467
Q ss_pred eCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 215 SIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 215 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
.++.-+.....++|.-++.......+..++.+ |+....|+|=|.
T Consensus 478 ~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 478 QIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred eccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 78888888889999988874444445556666 887777776543
No 155
>PRK09183 transposase/IS protein; Provisional
Probab=96.69 E-value=0.0085 Score=50.14 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+.|+|++|+|||+||..+.+....+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3568899999999999999998775443
No 156
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0019 Score=51.99 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=25.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999988754
No 157
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0025 Score=53.36 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=44.3
Q ss_pred HHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHH
Q 041612 103 NILSALED--PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 103 ~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l 160 (276)
+|+..+.. .+..+|+|.|.||+|||||.-.+......++|--.++-|+-|++++-..+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 56666654 45779999999999999999999998877765556677777777654444
No 158
>PRK07667 uridine kinase; Provisional
Probab=96.65 E-value=0.0025 Score=50.92 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...+|+|.|.+|+||||+|..+......
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999999999999999887654
No 159
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.65 E-value=0.0015 Score=46.86 Aligned_cols=23 Identities=48% Similarity=0.779 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
|-|+|.+|+|||+||..+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999776554
No 160
>PRK00625 shikimate kinase; Provisional
Probab=96.65 E-value=0.0019 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.|.++|++|+||||+++.+.+....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999887653
No 161
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.64 E-value=0.0036 Score=47.21 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ 153 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 153 (276)
++|.|+|..|+|||||++.+.+....++ +...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g-~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG-YRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC-CceEEEEEccC
Confidence 4799999999999999999999988653 55555555544
No 162
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.61 E-value=0.0016 Score=52.13 Aligned_cols=23 Identities=48% Similarity=0.754 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+|+|.|.+|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 163
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.61 E-value=0.038 Score=49.55 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.++.++|.+|+||||.+..+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999888877754
No 164
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.035 Score=51.92 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=82.1
Q ss_pred HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHhcccCC--------------------CCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPDV-NMLGIYGMGGIGKTMLAEEIARKVKSDK--------------------LFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~l~ 161 (276)
.|.+.+..+.. +.+.++|+.|+||||+|+.+.+...-.+ +++. +.+...+.....++
T Consensus 27 ~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~eid~~s~~~v~~i- 104 (576)
T PRK14965 27 TLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV-FEIDGASNTGVDDI- 104 (576)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe-eeeeccCccCHHHH-
Confidence 55555555554 4668999999999999999887754211 2222 22232333333333
Q ss_pred HHHHHHhCCCcc----------c--ccchhhhhhcc---ccCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGLKFH----------E--ESESGRANSLF---THGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~~~~----------~--~~~~~~~~~l~---~~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
+++.+.+..... + .-+....+.+. +.....+.+|++| ....+..........++++.++.++..
T Consensus 105 r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~ 184 (576)
T PRK14965 105 RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIV 184 (576)
T ss_pred HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHH
Confidence 344433321110 0 00111111222 2444556666555 444443332333456788899999888
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHcCCCc-HHHHHHHHH
Q 041612 226 SLFKKMAGDYIEDSEFQSIARDVAKECAGLP-VSIVTIARA 265 (276)
Q Consensus 226 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~i~~~ 265 (276)
..+...+...... --.+....|+..++|-. .|+..+-.+
T Consensus 185 ~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 185 DRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8777765411111 11234566777777754 455444333
No 165
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.60 E-value=0.14 Score=45.50 Aligned_cols=85 Identities=8% Similarity=0.028 Sum_probs=58.6
Q ss_pred CCCCcEEEEEecccccccc---CC--CCCCceeCCCCCHHHHHHHHHHhhCCC-CC-------------C-----hhHHH
Q 041612 188 GHKGCKVLLTARSQDVLSG---KM--DSRPNFSIGVLNEEEAWSLFKKMAGDY-IE-------------D-----SEFQS 243 (276)
Q Consensus 188 ~~~gs~IivTTR~~~va~~---~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~-------------~-----~~~~~ 243 (276)
.++--+||++|-+...... .+ ...+.+.|...+++.|.++...+.... .. + .....
T Consensus 180 ~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (431)
T PF10443_consen 180 QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLA 259 (431)
T ss_pred hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchH
Confidence 3455678888876554321 12 234578899999999999998887521 00 0 12334
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHh-CCCcc
Q 041612 244 IARDVAKECAGLPVSIVTIARALR-NKRLF 272 (276)
Q Consensus 244 ~~~~i~~~c~G~PLai~~i~~~L~-~~~~~ 272 (276)
-....+..+||-=.-+..+++.++ +.+++
T Consensus 260 eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 260 ELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 466788889999999999999998 66654
No 166
>PRK06217 hypothetical protein; Validated
Probab=96.59 E-value=0.0021 Score=50.78 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCC--CeEEEEE
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLF--DQVVFVE 150 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~ 150 (276)
..|.|.|.+|+||||+|+.+....... +| |..+|-.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~~ 39 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWLP 39 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeecc
Confidence 469999999999999999999887543 33 4456643
No 167
>PF14516 AAA_35: AAA-like domain
Probab=96.59 E-value=0.092 Score=45.66 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=42.7
Q ss_pred CCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 209 DSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 209 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
+....+.|++++.+|...|+..+-.. ..+ ...+.|...++|+|.-+..++..+.
T Consensus 191 NIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~---~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 191 NIGQPIELPDFTPEEVQELAQRYGLE--FSQ---EQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred ccccceeCCCCCHHHHHHHHHhhhcc--CCH---HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33457889999999999999877432 111 2278899999999999999999997
No 168
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.59 E-value=0.0018 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987764
No 169
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.58 E-value=0.036 Score=49.60 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+.+|.++|.+|+||||++..+......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999988766543
No 170
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.097 Score=45.11 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=85.4
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhccc-------------------CCCCCeEEEEEe---cCcCCHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKS-------------------DKLFDQVVFVEV---SQNQDIRK 159 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~f~~~~wv~~---~~~~~~~~ 159 (276)
.+...+..+. .+.+.+.|+.|+||+++|..+....-- ..|.|.. |+.- ++.-.+++
T Consensus 14 ~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~p~~~~~~I~vdq 92 (319)
T PRK06090 14 NWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLH-VIKPEKEGKSITVEQ 92 (319)
T ss_pred HHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEE-EEecCcCCCcCCHHH
Confidence 4444454444 557889999999999999988665421 1234433 3322 12234444
Q ss_pred HHHHHHHHhCCCcc------------cccchhhhhhc---cccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHH
Q 041612 160 IQEEIGDKLGLKFH------------EESESGRANSL---FTHGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEE 223 (276)
Q Consensus 160 l~~~i~~~l~~~~~------------~~~~~~~~~~l---~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~e 223 (276)
+ +.+.+.+..... +.-+....+.+ .+..++++.+|++|.+. .+......-...+.+.++++++
T Consensus 93 i-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~ 171 (319)
T PRK06090 93 I-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQ 171 (319)
T ss_pred H-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHH
Confidence 4 344444432211 01111122222 22555667777776654 4544444445678999999999
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 224 AWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 224 a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
+.+.+.....+ ....++..++|.|+.+..+
T Consensus 172 ~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 172 AMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 99888654211 1346788899999876554
No 171
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.58 E-value=0.0069 Score=49.75 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCeEEEEEecCcCCHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKL----FDQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~l 160 (276)
-.++.|+|.+|+|||+|+.++......... ...++|++....++...+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 468999999999999999999765432211 257889988776665544
No 172
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0018 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~ 134 (276)
+.|+|.|.||+||||+++.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 468999999999999999987
No 173
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.57 E-value=0.019 Score=48.73 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+.+|+|.|.+|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577999999999999999988765553
No 174
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.56 E-value=0.0023 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++.|.|++|+|||||++.+......
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999887643
No 175
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.55 E-value=0.0018 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 176
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.54 E-value=0.0034 Score=47.96 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ 155 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 155 (276)
++.|+|.+|+|||+++..+......+ -..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence 36899999999999999998887553 3456676665443
No 177
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.53 E-value=0.0031 Score=51.79 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
....+++|.|++|.|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457799999999999999999999887654
No 178
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.53 E-value=0.0045 Score=48.91 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
.+++.|+|++|+|||||+..+......+ |...+..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeecc
Confidence 4789999999999999999999987655 755555443
No 179
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.0033 Score=51.13 Aligned_cols=28 Identities=39% Similarity=0.469 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
--+++|+|.+|+|||||++.+..-.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCC
Confidence 3489999999999999999998766543
No 180
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.0079 Score=50.15 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
....+.++|++|+|||+||..+.+....+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 45578999999999999999998876544
No 181
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0024 Score=50.17 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.|.|.|.+|.||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999999543
No 182
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.1 Score=45.00 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=84.5
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC-----------------CCCCeEEEEEe-cCc-------CC
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD-----------------KLFDQVVFVEV-SQN-------QD 156 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------------~~f~~~~wv~~-~~~-------~~ 156 (276)
.+...+..+. .+.+.++|+.|+||+++|..+....--. .|.| ..|+.. ... .-
T Consensus 15 ~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~k~~~~I 93 (319)
T PRK08769 15 QTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGDKLRTEI 93 (319)
T ss_pred HHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccccccccc
Confidence 4555555554 4468899999999999998877654211 2333 333421 110 01
Q ss_pred HHHHHHHHHHHhCCCccc------------ccchhhhh---hccccCCCCcEEEEEeccc-cccccCCCCCCceeCCCCC
Q 041612 157 IRKIQEEIGDKLGLKFHE------------ESESGRAN---SLFTHGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLN 220 (276)
Q Consensus 157 ~~~l~~~i~~~l~~~~~~------------~~~~~~~~---~l~~~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~ 220 (276)
..+-.+++.+.+...... .-+....+ +..+....++.+|++|.+. .+......-...+.+.+++
T Consensus 94 ~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~ 173 (319)
T PRK08769 94 VIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPP 173 (319)
T ss_pred cHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcC
Confidence 122334555544432211 01111122 2222555677777777654 3443333344578899999
Q ss_pred HHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 221 EEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 221 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
.+++.+.+... + .. ..-+..++..++|.|+.+...
T Consensus 174 ~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 174 AHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 99998888654 1 11 112557789999999866543
No 183
>PRK06851 hypothetical protein; Provisional
Probab=96.51 E-value=0.049 Score=47.72 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=40.6
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHH
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIR 158 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (276)
.....+..+-.+++.|.|.+|+|||||++.++.....++ ++..++.|-..+.+++
T Consensus 204 s~~~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G-~~v~~~hC~~dPdslD 258 (367)
T PRK06851 204 DFVPSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEERG-FDVEVYHCGFDPDSLD 258 (367)
T ss_pred hhHHhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHhCC-CeEEEEeCCCCCCCcc
Confidence 444555555678899999999999999999999987664 6666666655544433
No 184
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.51 E-value=0.0025 Score=49.95 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987753
No 185
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.50 E-value=0.13 Score=43.05 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=89.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCeEEEEEec----------CcC-----------CH
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDK----LFDQVVFVEVS----------QNQ-----------DI 157 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~----------~~~-----------~~ 157 (276)
.+.+.....+.+-..++|++|.||-|.+..+.++...-+ .-+...|.+-+ +++ .-
T Consensus 24 ~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~D 103 (351)
T KOG2035|consen 24 LLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYD 103 (351)
T ss_pred HHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCccc
Confidence 555555567788999999999999998888777764311 12334444322 211 11
Q ss_pred HHHHHHHHHHhCCCcccccc---------hhhhhhccc-----------cCCCCcEEEEEeccc-cccccCCCCCCceeC
Q 041612 158 RKIQEEIGDKLGLKFHEESE---------SGRANSLFT-----------HGHKGCKVLLTARSQ-DVLSGKMDSRPNFSI 216 (276)
Q Consensus 158 ~~l~~~i~~~l~~~~~~~~~---------~~~~~~l~~-----------~~~~gs~IivTTR~~-~va~~~~~~~~~~~l 216 (276)
.-+.+++++.++....-+.. ....+.+.. .-...+|+|+..-+- .+....-...-.+++
T Consensus 104 RvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRv 183 (351)
T KOG2035|consen 104 RVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRV 183 (351)
T ss_pred HHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeC
Confidence 23445555544332111000 001111111 334456666643221 111211222336789
Q ss_pred CCCCHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 217 GVLNEEEAWSLFKKMAG-DYIEDSEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 217 ~~L~~~ea~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
...+++|....+.+... +...-| .+++.+|+++++|.---...+-...+
T Consensus 184 paps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 184 PAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred CCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999988875 222223 56899999999886544444444444
No 186
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.49 E-value=0.0052 Score=50.65 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=31.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRK 159 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 159 (276)
+..+|+|.|+||.|||||.-.+...+..+++--.++-|+-+++++-..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc
Confidence 467999999999999999999988887654334555555555554433
No 187
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.49 E-value=0.058 Score=48.14 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=65.0
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-CH---HHHHHHHHHHhCCC-----cc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-DI---RKIQEEIGDKLGLK-----FH 173 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~---~~l~~~i~~~l~~~-----~~ 173 (276)
+++..+..... ++.|.|+-++||||+.+.+....... .++++..... +. .+.+......-..+ .+
T Consensus 28 ~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLD 101 (398)
T COG1373 28 RLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLD 101 (398)
T ss_pred HHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEe
Confidence 44444444433 99999999999999996666555432 4444433322 22 22233322222210 11
Q ss_pred cccchhhhhhccc---cCCCCcEEEEEeccccccc-----cCCCCCCceeCCCCCHHHHHH
Q 041612 174 EESESGRANSLFT---HGHKGCKVLLTARSQDVLS-----GKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 174 ~~~~~~~~~~l~~---~~~~gs~IivTTR~~~va~-----~~~~~~~~~~l~~L~~~ea~~ 226 (276)
+......|....+ +..+. +|++|+-+..... ...+-...+.+.||+-.|...
T Consensus 102 EIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 102 EIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred cccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 2222223333332 33333 8999987766532 234555688999999999865
No 188
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.48 E-value=0.0033 Score=49.05 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..++++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887654
No 189
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.47 E-value=0.0031 Score=50.91 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=27.3
Q ss_pred hhcCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 107 ALEDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 107 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.+.++++|+++|..|+|||||...+.....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34556799999999999999999999987753
No 190
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.47 E-value=0.0023 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 191
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.47 E-value=0.045 Score=53.59 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.2
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+++..|......-+.++|.+|+|||++|..+......
T Consensus 198 ~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 198 QMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred HHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 6666666666667789999999999999999988753
No 192
>PRK05439 pantothenate kinase; Provisional
Probab=96.47 E-value=0.014 Score=50.02 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+.+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999887654
No 193
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.078 Score=49.44 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=78.7
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~l~ 161 (276)
.|.+.+..+. .+...++|+.|+|||++|+.+....... .+++ ++.++.........+
T Consensus 27 ~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~eidaas~~~vd~i- 104 (559)
T PRK05563 27 TLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEIDAASNNGVDEI- 104 (559)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEeeccccCCHHHH-
Confidence 4555555443 4557789999999999999987765321 1233 233444333333322
Q ss_pred HHHHHHhCCCcc----------c--ccchhhhhhccc---cCCCCcEEEEEe-ccccccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGLKFH----------E--ESESGRANSLFT---HGHKGCKVLLTA-RSQDVLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~~~~----------~--~~~~~~~~~l~~---~~~~gs~IivTT-R~~~va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
+.+.+.+..... + .-.......+.+ ..+....+|++| ....+..........+...+++.++..
T Consensus 105 r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~ 184 (559)
T PRK05563 105 RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIV 184 (559)
T ss_pred HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHH
Confidence 334343321110 0 001111112222 333444555444 444343222223346788899999988
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 226 SLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 226 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
..+...+......- -.+....|+..++|-+.-+
T Consensus 185 ~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 185 ERLKYILDKEGIEY-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 88887764211111 1234667788888766543
No 194
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.47 E-value=0.0088 Score=47.54 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|+|.|+.|+||||+++.+.+.....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999888643
No 195
>PRK13949 shikimate kinase; Provisional
Probab=96.47 E-value=0.003 Score=49.27 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+.|.|+|++|+||||+++.+......
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999988753
No 196
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.07 Score=49.07 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..++.+.++|++|+|||.||+.+.+.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 456689999999999999999999966544
No 197
>PRK13947 shikimate kinase; Provisional
Probab=96.46 E-value=0.003 Score=49.23 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.|.|+|++|+||||+|+.+.+.....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999887543
No 198
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.43 E-value=0.0026 Score=47.99 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+|.|.|.+|+||||+|+.+......
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987643
No 199
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.43 E-value=0.0026 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 200
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0029 Score=50.40 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.++|+|-||=|+||||||+.+.++....
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4689999999999999999999998744
No 201
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.096 Score=49.43 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=79.6
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCCCC---------------------CeEEEEEecCcCCHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDKLF---------------------DQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---------------------~~~~wv~~~~~~~~~~l 160 (276)
.|...+..+. .+.+.++|+.|+||||+|+.+.....-.... ...+.+..........
T Consensus 27 ~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~- 105 (620)
T PRK14948 27 TLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDN- 105 (620)
T ss_pred HHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHH-
Confidence 4444444443 3577899999999999999998886432100 0122233222223333
Q ss_pred HHHHHHHhCCCcc------------cccchhhhhhccc---cCCCCcEEEEEeccc-cccccCCCCCCceeCCCCCHHHH
Q 041612 161 QEEIGDKLGLKFH------------EESESGRANSLFT---HGHKGCKVLLTARSQ-DVLSGKMDSRPNFSIGVLNEEEA 224 (276)
Q Consensus 161 ~~~i~~~l~~~~~------------~~~~~~~~~~l~~---~~~~gs~IivTTR~~-~va~~~~~~~~~~~l~~L~~~ea 224 (276)
.+++++.+..... +.-.......+.+ .......+|++|.+. .+..........+.+..++.++.
T Consensus 106 IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei 185 (620)
T PRK14948 106 IRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAM 185 (620)
T ss_pred HHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHH
Confidence 3444444322110 0001111222222 333445555555433 33222222344677888999888
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHH
Q 041612 225 WSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 225 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 260 (276)
...+.+.+...... --.+....|++.++|.+..+.
T Consensus 186 ~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 186 VQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 88777766421111 012346788888988775443
No 202
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.43 E-value=0.035 Score=46.78 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=29.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
.+.+++.++|++|+||||.+..+....... -..+..++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 457899999999999999999988777544 1345555543
No 203
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0025 Score=53.93 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-|+|.++|+||.|||+|.+.+++....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 6799999999999999999999997654
No 204
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.42 E-value=0.0059 Score=49.42 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
.|+|+|-||+||||+|..+......++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~ 28 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKG 28 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999666665553
No 205
>PRK14530 adenylate kinase; Provisional
Probab=96.42 E-value=0.003 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.|.|+|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987764
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.41 E-value=0.014 Score=48.26 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEE
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVE 150 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 150 (276)
...+.++|.+|+|||+|+..+.+....+ -..+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence 3578899999999999999999987654 23455554
No 207
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.032 Score=52.22 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=36.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc--CCHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN--QDIRKIQEEIGD 166 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~ 166 (276)
..-|.|.|..|+|||+|++.+++... +++.-.+.+++.+.- ...+.+++.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~ 485 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN 485 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH
Confidence 45788999999999999999999887 334445666665532 245555554433
No 208
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.41 E-value=0.0047 Score=51.73 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHH
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEI 164 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 164 (276)
+.-+++.|+|.+|+|||+++.++....... ...++|++.... ...+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHH
Confidence 345799999999999999999999888766 788999988654 34444443
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.1 Score=45.37 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhccc--------------------CCCCCeEEEEEec--CcCCHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKS--------------------DKLFDQVVFVEVS--QNQDIRK 159 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~f~~~~wv~~~--~~~~~~~ 159 (276)
++++.+..+. .+-..+.|+.|+||+++|..+....-- ..|.|..+..... ....+++
T Consensus 13 ~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idq 92 (334)
T PRK07993 13 QLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDA 92 (334)
T ss_pred HHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHH
Confidence 5555665544 567789999999999999987666521 1244443222221 1233444
Q ss_pred HHHHHHHHhCCCccc------------ccchhhhh---hccccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHH
Q 041612 160 IQEEIGDKLGLKFHE------------ESESGRAN---SLFTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEE 223 (276)
Q Consensus 160 l~~~i~~~l~~~~~~------------~~~~~~~~---~l~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~e 223 (276)
+ +.+.+.+...... .-+....+ +..+..+.++.+|++|.+.+ +......-...+.+.++++++
T Consensus 93 i-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~ 171 (334)
T PRK07993 93 V-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQY 171 (334)
T ss_pred H-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHH
Confidence 3 3444444322111 11111222 22335566777777777644 443333334578899999999
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 224 AWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 224 a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
+.+.+....+ .++ +.+..++..++|.|..+
T Consensus 172 ~~~~L~~~~~---~~~---~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 172 ALTWLSREVT---MSQ---DALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHHHHccC---CCH---HHHHHHHHHcCCCHHHH
Confidence 9888765422 111 22567888999999643
No 210
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.40 E-value=0.0088 Score=48.81 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCeEEEEEecCcCCHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDK----LFDQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~l 160 (276)
-.++.|+|.+|+|||+|+..+........ .-..++|++....++...+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 46999999999999999999877654321 0156788887776665544
No 211
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.39 E-value=0.0029 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
++++|+|++|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998854
No 212
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.093 Score=47.66 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=74.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH-----HHHHHHHHHHhCCCccc------------
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI-----RKIQEEIGDKLGLKFHE------------ 174 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-----~~l~~~i~~~l~~~~~~------------ 174 (276)
.+..+.+.|++|+|||+||..+..... |..+--++....... -.-.+.+.+......-.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc
Confidence 456778899999999999999886653 665554443222111 11112222222111100
Q ss_pred ------c-cc--hhhh-hhccccCCCCcEEEE--EeccccccccCCC----CCCceeCCCCCH-HHHHHHHHHhhCCCCC
Q 041612 175 ------E-SE--SGRA-NSLFTHGHKGCKVLL--TARSQDVLSGKMD----SRPNFSIGVLNE-EEAWSLFKKMAGDYIE 237 (276)
Q Consensus 175 ------~-~~--~~~~-~~l~~~~~~gs~Iiv--TTR~~~va~~~~~----~~~~~~l~~L~~-~ea~~Lf~~~~~~~~~ 237 (276)
. ++ .+.+ ..+.+..+.|-|.+| ||....|... ++ ....|+++.++. ++..+.+...- ...
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n--~fs 689 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNLTTGEQLLEVLEELN--IFS 689 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCccCchHHHHHHHHHcc--CCC
Confidence 0 00 0111 111124555666554 5555666543 22 223688888876 66777776553 123
Q ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 238 DSEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 238 ~~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
+.+...++.+...+| +-..|+.+-.++-
T Consensus 690 d~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 690 DDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred cchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 344455566666666 3344555544443
No 213
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.37 E-value=0.099 Score=50.56 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=27.7
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++...+.-...+-+.++|++|+|||+||+.+.+...
T Consensus 202 ~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 202 ELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 334444444566789999999999999999998764
No 214
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.37 E-value=0.0029 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|+|.|.+|+||||||..+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998865
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.36 E-value=0.0025 Score=46.82 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCe
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVKSDKLFDQ 145 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 145 (276)
|.|.|.+|+|||++|+.+....... |..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE
Confidence 6789999999999999999887655 543
No 216
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.069 Score=49.74 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=80.6
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------------CCCCeEEEEEecCcCCHHHHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------------KLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~~l~ 161 (276)
.|...+..+. .+...++|+.|+||||+|+.+.+..... .+++. +++..........+.
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~idgas~~~vddIr 105 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEIDGASNTSVQDVR 105 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEecCcccCCHHHHH
Confidence 5555555544 4468899999999999999998876421 12332 233333333444443
Q ss_pred HHHHHHhCC-Ccc-----------cccchhhhhhc---cccCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGL-KFH-----------EESESGRANSL---FTHGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~-~~~-----------~~~~~~~~~~l---~~~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
++.+.+.. +.. +.-.....+.+ .+..++.+.+|++|.+ ..+..........+++.+++.++..
T Consensus 106 -~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~ 184 (563)
T PRK06647 106 -QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIY 184 (563)
T ss_pred -HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHH
Confidence 33322211 100 00111111122 2244455666665533 3332222222346889999999988
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHH
Q 041612 226 SLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSI 259 (276)
Q Consensus 226 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 259 (276)
..+.+.+...... --.+....|+..++|-+-.+
T Consensus 185 ~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 185 NMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 8888776421111 11234667888888876433
No 217
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.36 E-value=0.0041 Score=48.70 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...+|.+.|++|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999988754
No 218
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.35 E-value=0.057 Score=52.32 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...++.++|++|+||||+++.+......
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~ 375 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGR 375 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999987653
No 219
>PRK04182 cytidylate kinase; Provisional
Probab=96.35 E-value=0.0089 Score=46.78 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999988764
No 220
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.35 E-value=0.0035 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++|+|++|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999997753
No 221
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.35 E-value=0.01 Score=48.25 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ 155 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 155 (276)
-.++.|.|.+|+|||+++.++......+ -..++|++....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCC
Confidence 5689999999999999999998776543 2456777654443
No 222
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.35 E-value=0.0095 Score=48.67 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=34.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKI 160 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l 160 (276)
-.++.|+|.+|+|||+++.++....... -..++|++.. ..+...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4689999999999999999998876544 4678888876 4444443
No 223
>PRK13975 thymidylate kinase; Provisional
Probab=96.33 E-value=0.0037 Score=49.85 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+.|.|.|+.|+||||+++.+......
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999988864
No 224
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.32 E-value=0.0036 Score=50.33 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+|+|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999988753
No 225
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0061 Score=47.64 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999877
No 226
>PRK14527 adenylate kinase; Provisional
Probab=96.30 E-value=0.0049 Score=49.06 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...+|.|+|++|+||||+|+.+......
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999877654
No 227
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.29 E-value=0.0043 Score=49.63 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 228
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0055 Score=49.05 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
.--+++|+|++|+|||||.+.+..-...+ +..+|+.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECC
Confidence 34589999999999999999987666544 56677653
No 229
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.28 E-value=0.016 Score=54.26 Aligned_cols=52 Identities=31% Similarity=0.456 Sum_probs=37.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHH
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDK 167 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 167 (276)
+.-++..++|++|.||||||..+.++.... ++=+++|..-+...+-..|...
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYs-----VvEINASDeRt~~~v~~kI~~a 375 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYS-----VVEINASDERTAPMVKEKIENA 375 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCce-----EEEecccccccHHHHHHHHHHH
Confidence 357799999999999999999999887533 5556666665555555555443
No 230
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.27 E-value=0.041 Score=45.44 Aligned_cols=38 Identities=37% Similarity=0.543 Sum_probs=31.5
Q ss_pred HHHHhhcCC------CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 103 NILSALEDP------DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 103 ~l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-|...|.++ -++.|..+|++|.|||.+|+.+.+..++-
T Consensus 135 li~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 135 LIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred HHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 566667664 38899999999999999999999887653
No 231
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.27 E-value=0.0033 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
|.|+|++|+||||+|+.+.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999987763
No 232
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.27 E-value=0.01 Score=45.98 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|.|.|.+|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999987653
No 233
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.24 E-value=0.0088 Score=49.14 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
+-.++|+|.+|+|||+|...+....... |.++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 3478899999999999999999887665 877776643
No 234
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.23 E-value=0.0042 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
|.++|++|+||||+|+.+......
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999877643
No 235
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.20 E-value=0.019 Score=50.18 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCe-EEEEEecCcC-CHHHHHHHHHHHhCCCcc
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQ-VVFVEVSQNQ-DIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~l~~~i~~~l~~~~~ 173 (276)
++++.+.. ..-..+.|+|.+|+|||||++.+.+....+ +.+. .+|+.+.+.. .+.++.+.+...+.....
T Consensus 122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC
Confidence 56666654 234577999999999999999999887654 3454 4677777654 678888888776665443
No 236
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.20 E-value=0.0049 Score=48.88 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 237
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.19 E-value=0.008 Score=48.15 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+...+|.|+|.+|+||||||+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999887643
No 238
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.19 E-value=0.015 Score=46.22 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887654
No 239
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.18 E-value=0.017 Score=52.13 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 73 NWLARANNVIEAADNFTKDEATTNKRCFKGNILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 73 ~wl~~l~~~~~~~ed~ld~~~~~~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+...+..+..+.+++++.+ .. + ...++ ..|+|+|.+|+|||||...+.+..
T Consensus 176 ~~~~~l~~~~~~l~~ll~~~-~~-------~----~~~~g-~kVvIvG~~nvGKSSLiN~L~~~~ 227 (442)
T TIGR00450 176 SLNQLLLSIIAELKDILNSY-KL-------E----KLDDG-FKLAIVGSPNVGKSSLLNALLKQD 227 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-------H----HhhcC-CEEEEECCCCCcHHHHHHHHhCCC
Confidence 66777777777777777766 21 1 11222 468999999999999999998763
No 240
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.18 E-value=0.016 Score=50.26 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=51.4
Q ss_pred HHHHhhcCCC---ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhC
Q 041612 103 NILSALEDPD---VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLG 169 (276)
Q Consensus 103 ~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 169 (276)
.+...+.+++ +..+-|+|..|.|||.+.+++++.... ..+|+++-.+++...++..|+.+++
T Consensus 17 ~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 17 RLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred HHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhc
Confidence 5666666543 445688999999999999999988843 3589999999999999999999885
No 241
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.17 E-value=0.0059 Score=47.77 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.|.|+|+.|+||||+++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 242
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.16 E-value=0.021 Score=46.88 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=34.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
-.++.|.|.+|+|||||+.++......++ ...++++ ...+..++++.+ .+++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~--~e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVS--TQLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEe--CCCCHHHHHHHH-HHhCC
Confidence 45899999999999999877666553332 3456666 333556666665 34443
No 243
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.16 E-value=0.0043 Score=48.32 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
|.|.|.+|+|||||.+.+....+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988854
No 244
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.16 E-value=0.0045 Score=49.03 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+.|+|++|+|||||++.+.....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3789999999999999999976653
No 245
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.16 E-value=0.0056 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..+++.++|++|+||||||..+.+....
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999888754
No 246
>PF13245 AAA_19: Part of AAA domain
Probab=96.16 E-value=0.014 Score=38.94 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=18.8
Q ss_pred CccEEEEEcCCCCcHHH-HHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTM-LAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTt-La~~v~~~~ 137 (276)
+.++..|.|++|.|||+ ++..+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678889999999995 555555444
No 247
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.088 Score=48.57 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..++=|.++|++|+|||.||+.+.++..+-
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 347788999999999999999999998765
No 248
>PRK12377 putative replication protein; Provisional
Probab=96.15 E-value=0.0057 Score=50.74 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
...+.++|.+|+|||+||..+.+....+ .-.+.++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH
Confidence 4578999999999999999999998754 3335666553
No 249
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.14 E-value=0.011 Score=49.91 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+...++...+..++.|.|.+|.|||||...+.+.....
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 45566677788999999999999999999999887654
No 250
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.14 E-value=0.0058 Score=44.29 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.|.|+|..|+|||||.+.+.+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 3789999999999999999877654
No 251
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.12 E-value=0.008 Score=47.38 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE 163 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 163 (276)
++.|.|.+|+|||+|+.++......+ =..+.|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36789999999999999987765433 24567776543 44444433
No 252
>PLN02200 adenylate kinase family protein
Probab=96.12 E-value=0.0058 Score=50.34 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.+|.|.|++|+||||+|+.+.....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987653
No 253
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.11 E-value=0.17 Score=41.76 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=37.8
Q ss_pred eeCCCCCHHHHHHHHHHhhCCCCCChh--HHHHHHHHHHHcCCCcHHHHHHHH
Q 041612 214 FSIGVLNEEEAWSLFKKMAGDYIEDSE--FQSIARDVAKECAGLPVSIVTIAR 264 (276)
Q Consensus 214 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~--~~~~~~~i~~~c~G~PLai~~i~~ 264 (276)
|++.|++.++...+++.+......+.. ..+....|.....|.|.+|..++.
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 899999999999988887752221111 134577889999999999987764
No 254
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.11 E-value=0.0073 Score=50.01 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=26.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
.+..|.++||.|.||||..+.++.+...+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 466888999999999999999999988763
No 255
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0089 Score=46.11 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEE
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVE 150 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 150 (276)
-.+.+.|++|+||+||.+.+|.++... ...+|+.
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~ 71 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVR 71 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEE
Confidence 368899999999999999999999875 5667663
No 256
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.29 Score=42.18 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=83.2
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccC--------------CCCCeEEEEEe-----cCcC-------
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSD--------------KLFDQVVFVEV-----SQNQ------- 155 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~~-----~~~~------- 155 (276)
.+...+..+. .+...++|+.|+||+++|..+....-.. .|.|. .|+.- +...
T Consensus 15 ~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl-~~i~p~~~~~g~~~~~~~~~~ 93 (314)
T PRK07399 15 LLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDL-LWVEPTYQHQGKLITASEAEE 93 (314)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCE-EEEeccccccccccchhhhhh
Confidence 3444444454 5789999999999999998887765321 23332 33321 1000
Q ss_pred ---------C-HHHHHHHHHHHhCCCccc------------ccchhhhhhccc---cCCCCcEEEEEecc-ccccccCCC
Q 041612 156 ---------D-IRKIQEEIGDKLGLKFHE------------ESESGRANSLFT---HGHKGCKVLLTARS-QDVLSGKMD 209 (276)
Q Consensus 156 ---------~-~~~l~~~i~~~l~~~~~~------------~~~~~~~~~l~~---~~~~gs~IivTTR~-~~va~~~~~ 209 (276)
. ..+-.+.|.+.+...... .-+....+.+.+ ..+ .+.+|++|.+ ..+......
T Consensus 94 ~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~S 172 (314)
T PRK07399 94 AGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVS 172 (314)
T ss_pred ccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHh
Confidence 0 011234555554432211 011111222222 233 4456665544 344444444
Q ss_pred CCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 210 SRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 210 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
....+++.++++++..+.+.+......... ....++..++|-|..+...
T Consensus 173 Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~----~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 173 RCQIIPFYRLSDEQLEQVLKRLGDEEILNI----NFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hceEEecCCCCHHHHHHHHHHhhccccchh----HHHHHHHHcCCCHHHHHHH
Confidence 456899999999999999987743111111 1346788899999655443
No 257
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.09 E-value=0.0063 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
...+.+.|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35778999999999999999998754
No 258
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.09 E-value=0.0051 Score=46.93 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
++.|+|.+|+||||||+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999888753
No 259
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.09 E-value=0.0056 Score=47.07 Aligned_cols=29 Identities=41% Similarity=0.661 Sum_probs=25.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
.++++|+|..|+|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47899999999999999999998887763
No 260
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.09 E-value=0.068 Score=51.59 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=30.3
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+++..|......-+.++|++|+|||++|+.+.+....
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5666666666667889999999999999999988744
No 261
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.09 E-value=0.019 Score=49.44 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=42.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDK----LFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
.-.++-|+|.+|+|||+++.+++....... .=..++|++....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 367889999999999999999987754210 01378999988888877654 44455544
No 262
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.08 E-value=0.0077 Score=49.90 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=36.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe--cC--cCCHHHHHHHHHHHhCCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV--SQ--NQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~--~~~~~~l~~~i~~~l~~~ 171 (276)
.-.+++|+|.+|+|||||++.+..-.... ...+.|-.- .. .....+-..++++.++.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~ 99 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLSKEERRERVLELLEKVGLP 99 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcchhHHHHHHHHHHHHhCCC
Confidence 34689999999999999999999888764 334443211 11 112333445566666643
No 263
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.035 Score=48.35 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+-|.++|++|.|||-||++|+......
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 5678899999999999999999988754
No 264
>PRK14531 adenylate kinase; Provisional
Probab=96.02 E-value=0.0065 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.|.|+|++|+||||+++.+.....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 265
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.02 E-value=0.0061 Score=43.46 Aligned_cols=22 Identities=45% Similarity=0.398 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~ 134 (276)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3579999999999999999976
No 266
>PRK13946 shikimate kinase; Provisional
Probab=96.02 E-value=0.0072 Score=47.81 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+.|.+.|++|+||||+++.+......
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999988743
No 267
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.00 E-value=0.02 Score=49.42 Aligned_cols=58 Identities=22% Similarity=0.408 Sum_probs=42.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKL----FDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
.-.++-|+|.+|+|||+++.++......... =..++|++....++...+. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 4678999999999999999999876533211 1478999988887877765 34455543
No 268
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.99 E-value=0.0059 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 041612 115 MLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.|+|.|..|+|||||+..+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 3899999999999999999977
No 269
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.024 Score=50.02 Aligned_cols=29 Identities=24% Similarity=0.475 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+.++|+++|++|+||||++..+......+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999998877543
No 270
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.98 E-value=0.0083 Score=49.74 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-.+++|.|+.|+|||||.+.+..-.+..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~ 55 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPK 55 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 4689999999999999999999877654
No 271
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.22 Score=43.36 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=41.5
Q ss_pred cCCCCcEEEEEecc-ccccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHH
Q 041612 187 HGHKGCKVLLTARS-QDVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 187 ~~~~gs~IivTTR~-~~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 260 (276)
..++++.+|++|.+ ..+......-...+.+.+++.++..+.+..... . + ....+..++|.|+.+.
T Consensus 158 EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~---~--~----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 158 EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV---A--D----ADALLAEAGGAPLAAL 223 (342)
T ss_pred CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC---C--h----HHHHHHHcCCCHHHHH
Confidence 55566666666655 445444334446789999999999988876511 1 1 1235677888887444
No 272
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.97 E-value=0.0061 Score=48.43 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988753
No 273
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.97 E-value=0.0061 Score=46.83 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+++|+|+.|+|||||+..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987654
No 274
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.0065 Score=49.71 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
--.++|+|++|+|||||-+.+..-.+.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 348999999999999999999876654
No 275
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.01 Score=45.99 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=28.4
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 108 LEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 108 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+..+...+|-+.|.+|.||||+|..+.......
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 445567799999999999999999999998765
No 276
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.95 E-value=0.0058 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.684 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999877653
No 277
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.95 E-value=0.0068 Score=51.20 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
+.|+|+|-||+||||++..+......++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G 28 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG 28 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC
Confidence 5799999999999999999888876553
No 278
>PRK13948 shikimate kinase; Provisional
Probab=95.94 E-value=0.0081 Score=47.41 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+.|.++|+.|+||||+++.+.....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 279
>PRK14532 adenylate kinase; Provisional
Probab=95.94 E-value=0.0068 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.|.+.|++|+||||+|+.+.....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378899999999999999986653
No 280
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.93 E-value=0.015 Score=47.31 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc-----CCCCCeEEEEEecCcCCHHHHHHHHHH
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS-----DKLFDQVVFVEVSQNQDIRKIQEEIGD 166 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~l~~~i~~ 166 (276)
+..|.|++|+|||+++..+...... .......+-++...+.....++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999999876666666511 112445555555556566666666655
No 281
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.92 E-value=0.0081 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++.|+|.+|+|||||++.+......
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999987653
No 282
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.92 E-value=0.017 Score=49.96 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+..+|+|.|.+|+|||||...+.......
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457799999999999999999987777654
No 283
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.91 E-value=0.011 Score=45.49 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++++|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887655
No 284
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.91 E-value=0.017 Score=48.51 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-+.+.|.+|+|||+||+.+....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999998744
No 285
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.91 E-value=0.068 Score=52.33 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=44.6
Q ss_pred CCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 211 RPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 211 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
...+.|.||+..+...+......... ....+....|.++..|.|+-+.-+-..|.
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~~--~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCTK--LLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCcc--cccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 35789999999999999998887421 22234577899999999999999988887
No 286
>PRK13695 putative NTPase; Provisional
Probab=95.90 E-value=0.013 Score=45.88 Aligned_cols=25 Identities=44% Similarity=0.620 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++|.|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999887654
No 287
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.90 E-value=0.022 Score=45.62 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|+|.|+.|+||||+++.+.+.....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999877543
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.028 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998755
No 289
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.054 Score=46.83 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.++-|.++|++|+|||-||+.+..+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 46678999999999999999999887655
No 290
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.0069 Score=45.50 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+-|.|.|.||+|||||+..+.....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 46789999999999999999985544
No 291
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.87 E-value=0.028 Score=46.01 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=35.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
-..+.|.|.+|+|||+|+..+......+ -...+|++... +...+... +.+++.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFGM 72 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhCC
Confidence 4689999999999999999876654323 35678887643 33444433 444543
No 292
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.4 Score=39.52 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=30.4
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+|...|.--.++=+.++|++|.|||-||+.++++-
T Consensus 171 ELF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 171 ELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred HHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 77777777778889999999999999999999654
No 293
>PRK06761 hypothetical protein; Provisional
Probab=95.86 E-value=0.019 Score=48.48 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|.|.|++|+||||+++.+.......
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 589999999999999999999988643
No 294
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.021 Score=43.86 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=33.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKF 172 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 172 (276)
.+++.|+|.+|+||||+.+...... . +.. ..+...++-+++...|...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~---~~~--------ivNyG~~Mle~A~k~glve 51 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-V---KHK--------IVNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-h---hce--------eeeHhHHHHHHHHHhCCcc
Confidence 5799999999999999998877666 1 111 1255666667766666543
No 295
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.85 E-value=0.0083 Score=52.20 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=26.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.-++.++|+|++|+|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 457899999999999999999999998754
No 296
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.84 E-value=0.0088 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..|.|.|++|+||||+|+.+...+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988764
No 297
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.83 E-value=0.0082 Score=51.31 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+|.+.|++|+||||+|+.+....
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998765
No 298
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.83 E-value=0.015 Score=50.08 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD 156 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 156 (276)
.-+++-|+|++|+||||||.++....... -..++|++....++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhH
Confidence 35699999999999999999987766443 24556775544433
No 299
>PRK01184 hypothetical protein; Provisional
Probab=95.83 E-value=0.0087 Score=47.24 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.+|+|+|++|+||||+++ +...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 589999999999999987 4433
No 300
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.83 E-value=0.0085 Score=50.49 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
++|+|+|.+|+|||||+..+......++
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999987763
No 301
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.83 E-value=0.02 Score=49.27 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=35.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE 163 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 163 (276)
.+++.+.|.||+||||+|-...-.....+ ..+.-++.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47889999999999999999777766553 34666666666565555433
No 302
>PRK08356 hypothetical protein; Provisional
Probab=95.83 E-value=0.0081 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~ 134 (276)
.++|+|+|++|+||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999994
No 303
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.19 Score=44.67 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCcc-------------cc--c--
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFH-------------EE--S-- 176 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~-------------~~--~-- 176 (276)
|=-.++|+||+|||++..++.+...-. ++=+.++...+-.+ ++.++........ +. .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~yd-----IydLeLt~v~~n~d-Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~ 309 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYD-----IYDLELTEVKLDSD-LRHLLLATPNKSILLIEDIDCSFDLRERRKKKK 309 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCc-----eEEeeeccccCcHH-HHHHHHhCCCCcEEEEeeccccccccccccccc
Confidence 446789999999999999999888633 33334444433333 5555544332100 00 0
Q ss_pred -c-h---------hhhhhccc-c-CCCCcEEEE-Eecccccccc-CCCC---CCceeCCCCCHHHHHHHHHHhhCCCCCC
Q 041612 177 -E-S---------GRANSLFT-H-GHKGCKVLL-TARSQDVLSG-KMDS---RPNFSIGVLNEEEAWSLFKKMAGDYIED 238 (276)
Q Consensus 177 -~-~---------~~~~~l~~-~-~~~gs~Iiv-TTR~~~va~~-~~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 238 (276)
. . +.+..+-. + .+.+-|||| ||-..+-+.. .+.. +--+.+..=+.+....||....+...++
T Consensus 310 ~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h 389 (457)
T KOG0743|consen 310 ENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDH 389 (457)
T ss_pred ccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCc
Confidence 0 0 00111111 1 222356665 5544433221 2222 2246677778888888888887632222
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 041612 239 SEFQSIARDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 239 ~~~~~~~~~i~~~c~G~PLai~~i~~~L 266 (276)
+ +..+|.+...|.-+.-..|+..|
T Consensus 390 ~----L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 390 R----LFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred c----hhHHHHHHhhcCccCHHHHHHHH
Confidence 2 34445555555544444444433
No 304
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.81 E-value=0.014 Score=50.18 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=32.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 157 (276)
-+++-|+|++|+||||||.+++...... -...+|++....++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHH
Confidence 5689999999999999999987766443 345677766554443
No 305
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.81 E-value=0.0064 Score=45.36 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEE
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVE 150 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 150 (276)
.+++|+|..|+|||||.+.+...... ....+++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~ 45 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILIN 45 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEET
T ss_pred CEEEEEccCCCccccceeeecccccc---cccccccc
Confidence 58999999999999999999888765 24455443
No 306
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.0098 Score=46.10 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+.|.++|+.|+||||+.+.+.......
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 468899999999999999999888765
No 307
>PLN02348 phosphoribulokinase
Probab=95.80 E-value=0.01 Score=52.13 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.+.+|+|.|.+|+||||+|+.+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999998874
No 308
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.78 E-value=0.012 Score=43.79 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+|.+.|..|+||||+++.+.......
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 489999999999999999999987543
No 309
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.77 E-value=0.014 Score=44.88 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=26.7
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+|...+.+ +++.++|.+|+|||||...+....
T Consensus 28 ~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 28 ELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 55555555 689999999999999999998765
No 310
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.77 E-value=0.021 Score=44.55 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++.++|++|+||||++..+.......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999998877654
No 311
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.77 E-value=0.032 Score=46.01 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=37.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
.-.++.|.|.+|+|||+++.++......+ -...+|++... +..++.+.+ .+++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~-~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM-AQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH-HHhCC
Confidence 35689999999999999999876554332 35788888754 555555553 34443
No 312
>PRK02496 adk adenylate kinase; Provisional
Probab=95.76 E-value=0.01 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+.|.|++|+||||+++.+.....
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987663
No 313
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.76 E-value=0.0096 Score=46.86 Aligned_cols=37 Identities=35% Similarity=0.428 Sum_probs=26.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
..-+.++|.+|+|||.||..+.+....++ -.+.|++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeec
Confidence 35699999999999999999998876542 23555544
No 314
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.75 E-value=0.013 Score=47.52 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+......
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 358999999999999999999987654
No 315
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.75 E-value=0.018 Score=49.39 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRK 159 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 159 (276)
+++.+.|.||+||||+|....-....++ ..+.-++.....++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHH
Confidence 6889999999999999988776665542 2244444443333333
No 316
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.75 E-value=0.028 Score=47.77 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=27.9
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+...+.. ..+.+|.|.|.+|+||||+|..+.+...
T Consensus 81 ~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 81 LLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444444 4567899999999999999999998873
No 317
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.06 Score=42.29 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEE
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFV 149 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 149 (276)
-.+.|.|+.|+|||||-+.+..-.+.. -..+.|-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~ 62 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQ 62 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEec
Confidence 378899999999999999998877665 3445554
No 318
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.014 Score=47.06 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||++.+......
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987643
No 319
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.72 E-value=0.01 Score=52.86 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-.+.|+|+|.+|+|||||++.+......
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999999987543
No 320
>PLN02796 D-glycerate 3-kinase
Probab=95.71 E-value=0.018 Score=49.87 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+-+|+|.|..|+|||||++.+.......
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 45689999999999999999999887643
No 321
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.71 E-value=0.011 Score=48.09 Aligned_cols=24 Identities=38% Similarity=0.321 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987764
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.70 E-value=0.015 Score=45.67 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 458999999999999999999987654
No 323
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.022 Score=47.46 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
...-+.++|.+|+|||.||..+.+... +. --.+.++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFITA 141 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEEH
Confidence 556799999999999999999999988 42 234455543
No 324
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.70 E-value=0.011 Score=46.11 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..|.|+|++|+||||+++.+......
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35888999999999999999987643
No 325
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.69 E-value=0.012 Score=50.32 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=26.2
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+++.+++++.|-||+||||.+-.+.......
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 4567999999999999999988887776654
No 326
>PRK14528 adenylate kinase; Provisional
Probab=95.69 E-value=0.011 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.|.|.|++|+||||+|+.+.....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999987664
No 327
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.68 E-value=0.01 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 578899999999999999998765
No 328
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.68 E-value=0.018 Score=46.18 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++.|+|+.|+||||++..+.....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999998777664
No 329
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.66 E-value=0.011 Score=50.02 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|+|+|-||+||||++..+.......
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES 28 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence 578999999999999999988887654
No 330
>PLN02924 thymidylate kinase
Probab=95.66 E-value=0.031 Score=45.55 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=25.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
...|+|.|..|+||||+++.+......++
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g 44 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLG 44 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999987653
No 331
>PLN02165 adenylate isopentenyltransferase
Probab=95.65 E-value=0.012 Score=50.74 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.4
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 109 EDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 109 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+....+++|+|+.|+|||+||..+.....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 444566999999999999999999988854
No 332
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.017 Score=47.34 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=31.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+|-..+.-+.++=+.++|++|+|||-||+.+.++-...
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 44455556778889999999999999999999887654
No 333
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.62 E-value=0.015 Score=46.00 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+.+.|+|++|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998775
No 334
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.61 E-value=0.26 Score=40.57 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=37.5
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHH
Q 041612 108 LEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIG 165 (276)
Q Consensus 108 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 165 (276)
+......-+.++|..|+|||+|++.+.+....++ =..+-|.-.+-.++..++..+.
T Consensus 47 l~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~l~ 102 (249)
T PF05673_consen 47 LQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDLLR 102 (249)
T ss_pred HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHHHh
Confidence 3444566788999999999999999999987763 1233333333345666655544
No 335
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.61 E-value=0.011 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEcCCCCcHHHHHHHHHHhcccC
Q 041612 118 IYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 118 I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
|+|++|+||||+++.+.+.....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999988765
No 336
>PRK10536 hypothetical protein; Provisional
Probab=95.61 E-value=0.028 Score=46.66 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=30.2
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEE
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVF 148 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w 148 (276)
.++..+.+. .++.+.|..|+|||+||..+..+.-..+.|+.++.
T Consensus 66 ~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 66 HYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred HHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 555555553 48999999999999999998885322223554443
No 337
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.59 E-value=0.034 Score=46.68 Aligned_cols=52 Identities=23% Similarity=0.441 Sum_probs=38.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCC-CeEEEEEecCcCC-HHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLF-DQVVFVEVSQNQD-IRKIQEEIGD 166 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~-~~~l~~~i~~ 166 (276)
-..++|.|.+|+|||+|++.++++.+.+ | +..+++.+++... ..++...+..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 4579999999999999999999998765 4 4566667766653 4555555543
No 338
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.59 E-value=0.016 Score=45.98 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|.|||||.+.+......
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999887654
No 339
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.58 E-value=0.021 Score=43.13 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=33.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN 154 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 154 (276)
--++.+.|++|+||+||-.-+......+-.|...+|+.-.+-
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 358999999999999999999999988733346788865443
No 340
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.58 E-value=0.012 Score=42.63 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 041612 115 MLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.|+|.|.+|+|||||...+.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999999974
No 341
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.58 E-value=0.016 Score=44.16 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999998887654
No 342
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.57 E-value=0.016 Score=46.96 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+......
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987654
No 343
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=95.57 E-value=0.028 Score=46.60 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN 154 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 154 (276)
+.|+|+|-|||||||.+..+.-.....+ ..+.-+.....
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G--~kVl~iGCDPK 39 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMG--KKVLQIGCDPK 39 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESSS
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhcc--ceeeEecccCC
Confidence 4799999999999999999888777652 45555644433
No 344
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.57 E-value=0.013 Score=40.41 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999988865
No 345
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.018 Score=46.85 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987543
No 346
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.55 E-value=0.012 Score=47.58 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||++.+......
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999987653
No 347
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=1.2 Score=37.14 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++=+.++|++|.|||-+|+....+-.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 466788999999999999998776544
No 348
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.55 E-value=0.012 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+++|.+|+|||||...+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998654
No 349
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.55 E-value=0.011 Score=47.76 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..|+++|.+|+|||||...+.++....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~ 32 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE 32 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc
Confidence 578999999999999999999887653
No 350
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.55 E-value=0.024 Score=47.49 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ 153 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 153 (276)
-.++.|.|.+|+|||+++.++......+ =..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 5689999999999999999986654333 24677787754
No 351
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.54 E-value=0.058 Score=43.17 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
++...|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 445789999999999999999988764
No 352
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.54 E-value=0.016 Score=46.44 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEE
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFV 149 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 149 (276)
+..++.+.|+.|+|||.||....-+.-..+.|+.++++
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34589999999999999999988766555678888777
No 353
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.54 E-value=0.012 Score=47.54 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987654
No 354
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.53 E-value=0.011 Score=49.68 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+.|.|+|.||+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57999999999999999999887665
No 355
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.016 Score=46.76 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+++|+|+.|.|||||++.+......
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 8999999999999999999977653
No 356
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.51 E-value=0.019 Score=47.27 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|.|||||++.+.....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45899999999999999999987654
No 357
>PRK15453 phosphoribulokinase; Provisional
Probab=95.51 E-value=0.016 Score=48.73 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|+|.|.+|+||||+++.+.....
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999886553
No 358
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.51 E-value=0.014 Score=47.29 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|+|.|-||+||||++-.+.......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 578999999999999888887776654
No 359
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.50 E-value=0.014 Score=49.09 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|+|.|-||+||||++..+......+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~ 28 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEM 28 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhC
Confidence 578888999999999999988877654
No 360
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.50 E-value=0.019 Score=45.75 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-.+++|+|..|.|||||++.+.......
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~ 53 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQPS 53 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3489999999999999999999876543
No 361
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.017 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||++.+......
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987653
No 362
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.02 Score=46.65 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987643
No 363
>PRK12338 hypothetical protein; Provisional
Probab=95.48 E-value=0.015 Score=49.89 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.+|.|.|.+|+||||+|+.+.....
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 56899999999999999999988864
No 364
>PRK05973 replicative DNA helicase; Provisional
Probab=95.47 E-value=0.028 Score=46.26 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ 153 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 153 (276)
-.++.|.|.+|+|||+++.++......+ =..++|++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEe 102 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEY 102 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeC
Confidence 3589999999999999999987765433 23455665543
No 365
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.019 Score=47.33 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|+|||||++.+.....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999988764
No 366
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.47 E-value=0.018 Score=46.63 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 458999999999999999999887654
No 367
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.45 E-value=0.012 Score=44.88 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEcCCCCcHHHHHHHHHHhcc
Q 041612 118 IYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 118 I~G~gGiGKTtLa~~v~~~~~ 138 (276)
|.|+||+||||+|+.+.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999998763
No 368
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.074 Score=44.86 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+-|.++|++|.||+.||+.+.....
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 67889999999999999999987765
No 369
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.45 E-value=0.02 Score=45.85 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=27.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEE
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVE 150 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 150 (276)
-.+++|+|..|.|||||.+.+....... ...+++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~ 61 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFE 61 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEEC
Confidence 4589999999999999999998876543 4445543
No 370
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.45 E-value=0.014 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+|+|.+|+|||||...+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999987654
No 371
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.44 E-value=0.013 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999999864
No 372
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.43 E-value=0.019 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
+...|+|+|.+|+|||||...+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4567999999999999999999876
No 373
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.43 E-value=0.38 Score=42.72 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=47.0
Q ss_pred HHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCcc
Q 041612 103 NILSALED---------PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 103 ~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~ 173 (276)
+|++.|.. ..+.+|-++|.=|.||||-+..+.+.++.+++-...+-.++ ..|..-+-++.+.++++.+..
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~-~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT-YRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc-CChHHHHHHHHHHHHcCCcee
Confidence 77777763 23678999999999999999998888876432222222222 223445556778888877654
Q ss_pred c
Q 041612 174 E 174 (276)
Q Consensus 174 ~ 174 (276)
.
T Consensus 160 ~ 160 (451)
T COG0541 160 G 160 (451)
T ss_pred c
Confidence 4
No 374
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.43 E-value=0.017 Score=50.00 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
.-+.++|.+|+|||+||..+.+....++ ..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 6799999999999999999999886552 34566654
No 375
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.42 E-value=0.011 Score=47.95 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~ 134 (276)
...+.|+|.+|+||||+|+.+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5679999999999999999874
No 376
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.42 E-value=0.02 Score=46.27 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||++.+......
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999887643
No 377
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.41 E-value=0.02 Score=46.29 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999987654
No 378
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.41 E-value=0.035 Score=45.27 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ 155 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 155 (276)
-.+.+|.|.+|+|||||.+.+....+.. ...+|+.-...+
T Consensus 34 Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~ 73 (263)
T COG1127 34 GEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIP 73 (263)
T ss_pred CcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchh
Confidence 4689999999999999999999988765 567777554443
No 379
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.41 E-value=0.055 Score=44.49 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLG 169 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 169 (276)
.-.++.|+|.+|+|||+|+.++......+ =..++|++..+. ...+.+.+ .+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCC
Confidence 35689999999999999999986554322 357888887543 45555543 3444
No 380
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.015 Score=45.74 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|.|..|.|||||++.+.....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987654
No 381
>PRK13973 thymidylate kinase; Provisional
Probab=95.40 E-value=0.052 Score=43.99 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..|+|-|+.|+||||+++.++.....+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~ 30 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAA 30 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 579999999999999999999998765
No 382
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.022 Score=46.79 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.++.....
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999987643
No 383
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.40 E-value=0.015 Score=53.73 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=24.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+++.+|+|.|.+|+||||||+.+....
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3467899999999999999999998765
No 384
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.40 E-value=0.023 Score=43.04 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|.|||||.+.+......
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 358999999999999999999887654
No 385
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.40 E-value=0.26 Score=46.85 Aligned_cols=27 Identities=37% Similarity=0.427 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+-+.++|++|+|||++|+.+.+....
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345999999999999999999887754
No 386
>PRK09354 recA recombinase A; Provisional
Probab=95.39 E-value=0.027 Score=48.93 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=32.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 157 (276)
.-+++-|+|++|+|||||+.++....... -...+|++.-..++.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH
Confidence 35689999999999999999987766543 345677766555443
No 387
>PRK06851 hypothetical protein; Provisional
Probab=95.39 E-value=0.029 Score=49.17 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN 154 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 154 (276)
....+++.|.|.+|+|||||.+.+.+.....+ |+...++|-+.+
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g-~~Ve~~~~~~d~ 70 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEKG-YDVEFLHCSSDN 70 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEcCCCC
Confidence 44567899999999999999999998886542 555555544443
No 388
>PRK13768 GTPase; Provisional
Probab=95.38 E-value=0.016 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.++.|.|+||+||||++..+......+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578999999999999998888776543
No 389
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.38 E-value=0.024 Score=48.52 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
....+|+|.|.+|+|||||+..+......+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 356799999999999999999988876543
No 390
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.37 E-value=0.022 Score=45.75 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987654
No 391
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.37 E-value=0.014 Score=45.98 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 041612 115 MLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~ 135 (276)
+|+|.|.+|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 392
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.37 E-value=0.022 Score=47.05 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|.|||||++.+......
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987643
No 393
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.37 E-value=0.022 Score=46.32 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.++.....
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987653
No 394
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.36 E-value=0.014 Score=44.76 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.++|.+|+|||||...+.+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998765
No 395
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.36 E-value=0.038 Score=49.07 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++.|.++|++|+|||++|+.+.......
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 5679999999999999999999887643
No 396
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.36 E-value=0.2 Score=38.66 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=54.6
Q ss_pred HHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCC-------------------CCCeEEEEEecCc---CCHHHH
Q 041612 104 ILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDK-------------------LFDQVVFVEVSQN---QDIRKI 160 (276)
Q Consensus 104 l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~---~~~~~l 160 (276)
|.+.+..+. ++.+.++|+.|+||+++|..+.+..--.. |.| ..|+.-... ...+++
T Consensus 9 L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~i~i~~i 87 (162)
T PF13177_consen 9 LKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKKKSIKIDQI 87 (162)
T ss_dssp HHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSSSSBSHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEecccccchhhHHHH
Confidence 344444454 45689999999999999999887754321 233 344443332 355555
Q ss_pred HHHHHHHhCCCcccc------------cchhhhh---hccccCCCCcEEEEEecccc
Q 041612 161 QEEIGDKLGLKFHEE------------SESGRAN---SLFTHGHKGCKVLLTARSQD 202 (276)
Q Consensus 161 ~~~i~~~l~~~~~~~------------~~~~~~~---~l~~~~~~gs~IivTTR~~~ 202 (276)
. .+.+.+....... -...... +..+..+..+.+|++|.+..
T Consensus 88 r-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 88 R-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp H-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred H-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 4 6766665442220 1111122 22226677899999998765
No 397
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.36 E-value=0.021 Score=47.41 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 358999999999999999999887654
No 398
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=95.36 E-value=0.062 Score=48.76 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 73 NWLARANNVIEAADNFTKDEATTNKRCFKGNILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 73 ~wl~~l~~~~~~~ed~ld~~~~~~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....++..+..+.+++++..... ..+ .++ ..|+|+|.+|+|||||...+....
T Consensus 187 ~i~~~i~~l~~~l~~l~~~~~~~----------~~~-~~~-~kV~ivG~~nvGKSSLln~L~~~~ 239 (449)
T PRK05291 187 KILEKLEELIAELEALLASARQG----------EIL-REG-LKVVIAGRPNVGKSSLLNALLGEE 239 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHh-hcC-CEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455555555555555444221 111 122 468999999999999999998754
No 399
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.35 E-value=0.018 Score=46.90 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987665
No 400
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.35 E-value=0.016 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
..+|+|+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999988766
No 401
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.35 E-value=0.019 Score=46.06 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..++|.|+.|.|||||.+.+.+....
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 46899999999999999999987654
No 402
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.35 E-value=0.025 Score=43.66 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe-cCcCCHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV-SQNQDIRKIQEEI 164 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~l~~~i 164 (276)
-.++|.|++|+||+||-+.+++-.... -....|-.- -+..+++..-+++
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~V 79 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQV 79 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHH
Confidence 369999999999999999999887665 334445321 1234556655555
No 403
>PRK04328 hypothetical protein; Provisional
Probab=95.34 E-value=0.036 Score=46.11 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=36.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 171 (276)
-.++.|.|.+|+|||+|+.++......+ -...+|++.... +..+.+ .++.++.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~--~~~i~~-~~~~~g~d 76 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH--PVQVRR-NMRQFGWD 76 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC--HHHHHH-HHHHcCCC
Confidence 5689999999999999999977664333 356788887653 334433 34555543
No 404
>PRK07933 thymidylate kinase; Validated
Probab=95.34 E-value=0.032 Score=45.22 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
+.|+|-|+.|+||||+++.+.+....++
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g 28 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARG 28 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 3689999999999999999999987653
No 405
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.34 E-value=0.027 Score=43.97 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 358999999999999999999987654
No 406
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.014 Score=46.42 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+.|.+.|.+|+||||+|+.+....+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 578889999999999999998877654
No 407
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.32 E-value=0.016 Score=47.12 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
--.++|+|++|+|||||...+..-.+.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 348999999999999999888765544
No 408
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.31 E-value=0.02 Score=52.78 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+...+++.++|++|+|||+||+.+..-...
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 345679999999999999999999887654
No 409
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.31 E-value=0.024 Score=45.58 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|..|.|||||.+.+......
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 58999999999999999999987653
No 410
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.30 E-value=0.023 Score=46.43 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||++.++.....
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 469999999999999999999987653
No 411
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.30 E-value=0.024 Score=46.56 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|..|+|||||.+.+......
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 58999999999999999999887653
No 412
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.30 E-value=0.025 Score=45.74 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|+|||||.+.+......
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987643
No 413
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.30 E-value=0.05 Score=45.44 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=41.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC----CCCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD----KLFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
-.+.-|+|.+|+|||.|+.+++-..... +.=..++|++-...++...+. +|++..+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 4689999999999999998887554321 112468999988888888775 56666543
No 414
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.025 Score=45.77 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.. .+++|+|..|+|||||.+.+......
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~ 49 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKP 49 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35 79999999999999999999887653
No 415
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.30 E-value=0.016 Score=47.16 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.++.-...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987654
No 416
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.015 Score=47.90 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||++.+......
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 358999999999999999999877643
No 417
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.023 Score=47.40 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987643
No 418
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.30 E-value=0.023 Score=46.63 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|+|||||.+.+.....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987654
No 419
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.30 E-value=0.02 Score=45.16 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...++.|.|.+|+||||+|+.+......
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987653
No 420
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.30 E-value=0.039 Score=43.10 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=31.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc-CCCCCeEEEEEecCcCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS-DKLFDQVVFVEVSQNQD 156 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~ 156 (276)
...+.+.|+.|+|||.||+.+...... . ....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~--~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGS--ERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SS--CCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCC--ccchHHHhhhcccc
Confidence 357888999999999999999998873 3 45566666654433
No 421
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.29 E-value=0.016 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.++|.+|+|||||...+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988754
No 422
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.28 E-value=0.024 Score=45.59 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+......
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999987653
No 423
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.28 E-value=0.016 Score=44.83 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+|+|.+|+|||||+..+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999987663
No 424
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.28 E-value=0.015 Score=44.20 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+|+++|.+|+|||||...+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999987653
No 425
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.016 Score=46.84 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999886543
No 426
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.27 E-value=0.016 Score=47.92 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||++.+......
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 358999999999999999999876643
No 427
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.27 E-value=0.022 Score=46.29 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999877643
No 428
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.27 E-value=0.045 Score=47.10 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=42.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC----CCCCeEEEEEecCcCCHHHHHHHHHHHhCCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD----KLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 171 (276)
.-+++-|+|.+|+|||+|+.+++-..... ..=..++|++....++++.+. ++++.++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 35688899999999999998876443211 112478999988888888875 456666554
No 429
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.27 E-value=0.026 Score=46.15 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|+|||||.+.+.....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35899999999999999999998654
No 430
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.27 E-value=0.049 Score=45.85 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=40.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE 163 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 163 (276)
.-+++-|+|+.|+||||+|.+++-..... -...+|++.-..++++.+.+-
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~l 108 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQL 108 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHHH
Confidence 46799999999999999999987666544 458899999888888776433
No 431
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.25 E-value=1.1 Score=39.77 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=46.8
Q ss_pred CccEEEEEcCCCCcHHH-HHHHHHHhc-ccCCCCCeEEEEEecCc-CCHHHHHHHHHHHhCCCcccccchhhhhhccccC
Q 041612 112 DVNMLGIYGMGGIGKTM-LAEEIARKV-KSDKLFDQVVFVEVSQN-QDIRKIQEEIGDKLGLKFHEESESGRANSLFTHG 188 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTt-La~~v~~~~-~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~~ 188 (276)
..+++.++|+.|+|||| ||+.-..-. ... -..+..++...- -...+-++.-++-++.+..-..+...........
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~--~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK--KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc--CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 37899999999999998 665543333 111 234566655432 2344445666777777655544443333333322
Q ss_pred CCCcEEEEEe
Q 041612 189 HKGCKVLLTA 198 (276)
Q Consensus 189 ~~gs~IivTT 198 (276)
..---|+|-|
T Consensus 280 ~~~d~ILVDT 289 (407)
T COG1419 280 RDCDVILVDT 289 (407)
T ss_pred hcCCEEEEeC
Confidence 2223455544
No 432
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.25 E-value=0.017 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.+++|+|..|+|||||.+.+....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999999999999999999876
No 433
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.045 Score=44.56 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
--.|+|+|.+|.|||||.+.+..-....
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl~d~t 57 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGLVDPT 57 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 3489999999999999999998855443
No 434
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.24 E-value=0.041 Score=44.00 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.++-++..|.|.+|+||||+...+.......
T Consensus 15 ~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 15 TSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred hcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3444688999999999999999988877765
No 435
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.23 E-value=0.064 Score=52.14 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+.+.++|++|+|||++|+.+.+....
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999999999999999988753
No 436
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.027 Score=45.23 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|+|||||.+.+.....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35899999999999999999998765
No 437
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.23 E-value=0.054 Score=47.18 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc----CCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS----DKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 171 (276)
.-.++-|+|.+|+|||+|+.+++-.... ...-..++|++-...++++.+.+ +++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3568889999999999999988644321 11124789999998888888754 56666654
No 438
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.22 E-value=0.029 Score=44.12 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEE
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFV 149 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 149 (276)
-..+-++|++|.|||||.+.+|...+.. ...+|+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~ 61 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILV 61 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEE
Confidence 4578999999999999999999998765 445555
No 439
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.11 Score=43.79 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++=|-++|.+|.|||-||+++.|+-..
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSA 245 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSA 245 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccch
Confidence 3667888999999999999999987653
No 440
>PRK10908 cell division protein FtsE; Provisional
Probab=95.22 E-value=0.027 Score=45.85 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999877653
No 441
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.21 E-value=0.016 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+++|.|.+|+|||||++.+......
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5899999999999999999877653
No 442
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.21 E-value=0.017 Score=45.93 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+|+|.|+.|+||||+++.+....
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 443
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.029 Score=43.85 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|.|||||.+.+.....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999988764
No 444
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.20 E-value=0.027 Score=45.02 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLLRP 52 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987654
No 445
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.20 E-value=0.027 Score=45.62 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|.|||||.+.++.....
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999987654
No 446
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.20 E-value=0.024 Score=46.66 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|.|||||.+.+.....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35899999999999999999987654
No 447
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.19 E-value=0.019 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.|+|+|.+|+|||||...+.+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~ 25 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH 25 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468899999999999999987554
No 448
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.19 E-value=0.027 Score=46.43 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|.|||||.+.+.....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987764
No 449
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.19 E-value=0.037 Score=49.15 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+-+|+|.|..|+|||||++.+..-.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~ 239 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVT 239 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 56799999999999999999997666543
No 450
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.18 E-value=0.015 Score=44.01 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 041612 116 LGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~ 136 (276)
|+|+|.+|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999876
No 451
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.18 E-value=0.063 Score=43.28 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
.+.|+|-|+-|+||||.++.++.....+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g 31 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERG 31 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999998874
No 452
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.17 E-value=0.032 Score=46.26 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|+|||||++.+.....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999987664
No 453
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.17 E-value=0.028 Score=46.98 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999887643
No 454
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.17 E-value=0.016 Score=43.33 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+++|.+|+|||+|...+....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 58899999999999999987664
No 455
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.027 Score=46.60 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|+|||||++.+.....
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999998754
No 456
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.17 E-value=0.036 Score=45.31 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=31.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc-cc-CCCCCeEEEEEecCcCCHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV-KS-DKLFDQVVFVEVSQNQDIRKIQEEI 164 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~-~~~f~~~~wv~~~~~~~~~~l~~~i 164 (276)
-.++.|.|.+|+|||+|+.++.... .. . ..++|++...+ ...+.+.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~ee~--~~~l~~~~ 67 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFEEP--PEELIENM 67 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESSS---HHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEecCC--HHHHHHHH
Confidence 5689999999999999999876554 33 2 35677776444 34444443
No 457
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.17 E-value=0.026 Score=44.02 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=24.8
Q ss_pred HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 104 ILSALEDPDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 104 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
+.+++.......|+++|.+|+|||||...+...
T Consensus 6 ~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 6 LWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 334444444567899999999999999998654
No 458
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.027 Score=46.57 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|..|.|||||.+.+.....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987754
No 459
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.16 E-value=0.02 Score=48.36 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|+|+|-||+||||++..+.......
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~ 28 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTM 28 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 578888999999999998887777544
No 460
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.028 Score=46.17 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999887654
No 461
>PRK13976 thymidylate kinase; Provisional
Probab=95.15 E-value=0.06 Score=43.53 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.|+|-|+.|+||||+++.++......
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999998754
No 462
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.15 E-value=0.057 Score=46.58 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=40.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc---CC-CCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS---DK-LFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
.-.++.|+|.+|+|||+|+..++..... .. .-..++|++....++...+ ..+++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3678999999999999999988764321 11 1235789988877777664 345555544
No 463
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.15 E-value=0.029 Score=45.24 Aligned_cols=28 Identities=32% Similarity=0.294 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-.+++|+|..|.|||||.+.+......
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPP 54 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987653
No 464
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.15 E-value=0.028 Score=45.81 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987654
No 465
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.15 E-value=0.029 Score=45.35 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987654
No 466
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.14 E-value=0.027 Score=45.66 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|+|||||.+.+..-...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 358999999999999999999877543
No 467
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.13 E-value=0.027 Score=45.95 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987653
No 468
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.13 E-value=0.029 Score=45.37 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-.+++++|..|+|||||.+.++...+..
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~~~~ 56 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLVRPR 56 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4589999999999999999999988764
No 469
>PTZ00035 Rad51 protein; Provisional
Probab=95.12 E-value=0.09 Score=45.77 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=39.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc---C-CCCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS---D-KLFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
.-.++.|+|.+|+|||+|+..++..... . ..-..++|++-...++.+.+ ..+++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3568999999999999999988755431 1 01235678888777777664 344555554
No 470
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.12 E-value=0.021 Score=47.99 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++|++.|-||+||||++..+......+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~ 27 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKR 27 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHC
Confidence 368899999999999998887777644
No 471
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.12 E-value=0.029 Score=44.24 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=25.8
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
++..++.. +....|+++|.+|+|||||...+...
T Consensus 6 ~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 6 DILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 34445532 45567899999999999999998765
No 472
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.12 E-value=0.031 Score=45.04 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|+|||||.+.+......
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 458999999999999999999877643
No 473
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.11 E-value=0.021 Score=47.98 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+|++.|-||+||||++-.+......+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~ 27 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKL 27 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhC
Confidence 68888999999999988877766543
No 474
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.11 E-value=0.019 Score=46.51 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|.|||||.+.+..-...
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 368999999999999999999987543
No 475
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.11 E-value=0.019 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.++|.+|+|||||...+.+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999987654
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.10 E-value=0.032 Score=43.32 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||++.+......
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999987654
No 477
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.10 E-value=0.03 Score=45.77 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|+|||||.+.+......
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987653
No 478
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.10 E-value=0.018 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+++|.+|+|||||...+.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998664
No 479
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.09 E-value=0.034 Score=46.60 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||.+.+......
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 358999999999999999999977653
No 480
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.08 E-value=0.019 Score=43.09 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..|+++|.+|+|||||...+.....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~ 26 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF 26 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999987763
No 481
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.08 E-value=0.033 Score=43.83 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|.|||||.+.+......
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987654
No 482
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.07 E-value=0.031 Score=46.66 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|+|||||++.+......
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987653
No 483
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=0.61 Score=41.87 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=42.5
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHh
Q 041612 108 LEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKL 168 (276)
Q Consensus 108 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l 168 (276)
+..+..+-+-|.|-+|.|||.+...++.+......--.++++...+-.....++..|...+
T Consensus 170 le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 170 LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 4446678899999999999999999988876532112446666555455666666666555
No 484
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.06 E-value=0.034 Score=43.62 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|+|||||++.+......
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 358999999999999999999987654
No 485
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.06 E-value=0.025 Score=41.14 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
|.+.|.||+||||++..+......+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999998887654
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.06 E-value=0.03 Score=45.50 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=39.9
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH
Q 041612 109 EDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE 163 (276)
Q Consensus 109 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 163 (276)
.+.+.+-+.|.||+|+||||-+..+.+..-...+-+.+.=++.|..-.+.-+-..
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~ 98 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNK 98 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHH
Confidence 4567888999999999999988888887765544466666777766555444333
No 487
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.06 E-value=0.02 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.++|.+|+|||||+..+.+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999998877653
No 488
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.05 E-value=0.023 Score=43.67 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
...|.++|.+|+|||||...+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 357899999999999999998654
No 489
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.05 E-value=0.031 Score=46.04 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|.|..|.|||||++.+......
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 358999999999999999999987643
No 490
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.05 E-value=0.091 Score=40.99 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+++.|.|.+|+|||++|..+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 468999999999999999998764
No 491
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.05 E-value=0.044 Score=49.64 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSDKLFD 144 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 144 (276)
-+.|.|++|+|||+||+.+.........|.
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 588999999999999999998765433444
No 492
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.04 E-value=0.037 Score=45.19 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|+.|.|||||++.+.....
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCccC
Confidence 45899999999999999999988765
No 493
>COG1084 Predicted GTPase [General function prediction only]
Probab=95.04 E-value=1.3 Score=37.93 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+.+.|.|.|+|.+|||||.+.+....
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Ak 192 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAK 192 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCC
Confidence 478999999999999999999987664
No 494
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.04 E-value=0.031 Score=51.36 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=27.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEE
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFV 149 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 149 (276)
.+++.+.|++|+||||.++.+++... |+.+-|.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~ 77 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWI 77 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC----CeeEEec
Confidence 56899999999999999999998874 5556665
No 495
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.04 E-value=0.031 Score=44.05 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|..|.|||||.+.+......
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999987654
No 496
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.15 Score=44.09 Aligned_cols=117 Identities=23% Similarity=0.185 Sum_probs=64.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc---------------------CCCCCeEEEEEecC----------cCCHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS---------------------DKLFDQVVFVEVSQ----------NQDIRKIQ 161 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~~~~wv~~~~----------~~~~~~l~ 161 (276)
.+-+.++|+.|+|||++|..+....-- ..|.|.. ++.-.+ ...++++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~-~~~p~~~~~~~g~~~~~I~id~i- 98 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFY-EITPLSDEPENGRKLLQIKIDAV- 98 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-EEecccccccccccCCCcCHHHH-
Confidence 456889999999999999998777521 1233322 332211 1233333
Q ss_pred HHHHHHhCCCccc------------ccchhhhhhc---cccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHH
Q 041612 162 EEIGDKLGLKFHE------------ESESGRANSL---FTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAW 225 (276)
Q Consensus 162 ~~i~~~l~~~~~~------------~~~~~~~~~l---~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~ 225 (276)
+.+.+.+...... .-+......+ .+....++.+|++|.+.. +..........+.+.+++.++..
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHH
Confidence 3454444332111 0111111222 223345677888887754 43322333457889999999988
Q ss_pred HHHHHh
Q 041612 226 SLFKKM 231 (276)
Q Consensus 226 ~Lf~~~ 231 (276)
+.+...
T Consensus 179 ~~L~~~ 184 (325)
T PRK08699 179 AYLRER 184 (325)
T ss_pred HHHHhc
Confidence 877654
No 497
>PF13479 AAA_24: AAA domain
Probab=95.03 E-value=0.015 Score=47.10 Aligned_cols=20 Identities=45% Similarity=0.575 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEI 133 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v 133 (276)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46899999999999999886
No 498
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.02 E-value=0.023 Score=43.47 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.|+|.+|+|||||+..+.+..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~ 25 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999998877543
No 499
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.02 E-value=0.02 Score=43.45 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 041612 116 LGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~ 136 (276)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998765
No 500
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.01 E-value=0.02 Score=49.67 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-.+++.|++|+|||||-+.|..-....
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 479999999999999999998776554
Done!