Query 041612
Match_columns 276
No_of_seqs 185 out of 2109
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-28 6.3E-33 224.8 13.9 167 103-269 139-343 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 4.4E-22 1.5E-26 197.8 14.4 165 103-269 135-334 (1249)
3 1vt4_I APAF-1 related killer D 99.9 9.4E-23 3.2E-27 193.2 4.1 164 103-275 139-348 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 6.1E-20 2.1E-24 169.8 13.6 161 103-268 135-333 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.4 6.9E-13 2.4E-17 95.6 6.4 79 8-95 2-81 (115)
6 2qen_A Walker-type ATPase; unk 98.8 8.1E-08 2.8E-12 82.3 14.6 76 190-266 163-249 (350)
7 2chg_A Replication factor C sm 98.8 7.1E-08 2.4E-12 76.9 13.3 161 103-266 28-207 (226)
8 2fna_A Conserved hypothetical 98.8 6.3E-08 2.2E-12 83.1 13.1 74 190-267 169-254 (357)
9 1w5s_A Origin recognition comp 98.7 1.3E-07 4.3E-12 83.1 13.0 150 112-264 49-267 (412)
10 1njg_A DNA polymerase III subu 98.7 2.6E-07 9.1E-12 74.5 13.8 163 103-267 34-232 (250)
11 2qby_A CDC6 homolog 1, cell di 98.6 2.3E-07 7.8E-12 80.5 11.2 149 110-261 42-243 (386)
12 1sxj_B Activator 1 37 kDa subu 98.5 5.8E-07 2E-11 76.1 11.0 158 103-264 32-211 (323)
13 2qby_B CDC6 homolog 3, cell di 98.5 5.5E-07 1.9E-11 78.2 10.3 152 109-264 41-247 (384)
14 1fnn_A CDC6P, cell division co 98.4 4.5E-06 1.5E-10 72.5 13.8 145 114-262 45-246 (389)
15 2v1u_A Cell division control p 98.3 3.5E-06 1.2E-10 73.0 11.4 144 111-257 42-243 (387)
16 1iqp_A RFCS; clamp loader, ext 98.2 4.6E-06 1.6E-10 70.6 8.2 163 103-266 36-215 (327)
17 3bos_A Putative DNA replicatio 98.0 7.2E-05 2.5E-09 60.1 12.5 152 104-263 43-217 (242)
18 2chq_A Replication factor C sm 98.0 3.4E-05 1.1E-09 65.0 10.8 161 103-265 28-206 (319)
19 4b4t_J 26S protease regulatory 98.0 8.7E-05 3E-09 64.5 12.8 145 103-256 172-354 (405)
20 1hqc_A RUVB; extended AAA-ATPa 98.0 5.7E-05 1.9E-09 63.9 11.2 149 113-267 38-215 (324)
21 2qz4_A Paraplegin; AAA+, SPG7, 97.9 0.00058 2E-08 55.6 16.3 147 112-263 38-222 (262)
22 4b4t_M 26S protease regulatory 97.9 0.00018 6.2E-09 63.3 13.3 34 106-139 208-241 (434)
23 4b4t_I 26S protease regulatory 97.9 0.00026 8.8E-09 61.9 13.6 141 106-255 209-387 (437)
24 3h4m_A Proteasome-activating n 97.8 0.00016 5.6E-09 59.9 11.5 146 108-262 46-230 (285)
25 4b4t_L 26S protease subunit RP 97.8 0.00022 7.4E-09 62.9 12.5 145 103-256 205-387 (437)
26 3te6_A Regulatory protein SIR3 97.8 0.00098 3.3E-08 56.2 15.9 66 104-169 36-106 (318)
27 4b4t_H 26S protease regulatory 97.8 7.4E-05 2.5E-09 65.9 9.2 145 103-256 233-415 (467)
28 2z4s_A Chromosomal replication 97.7 0.00011 3.8E-09 65.1 9.4 143 113-260 130-303 (440)
29 1sxj_D Activator 1 41 kDa subu 97.7 0.00015 5.3E-09 61.9 9.8 158 103-263 48-235 (353)
30 3pvs_A Replication-associated 97.7 8.7E-05 3E-09 65.9 8.2 157 103-266 40-218 (447)
31 1jr3_A DNA polymerase III subu 97.7 0.00035 1.2E-08 60.1 11.9 148 113-264 38-222 (373)
32 1sxj_E Activator 1 40 kDa subu 97.7 0.00012 4.1E-09 62.7 8.5 78 187-266 160-240 (354)
33 1a5t_A Delta prime, HOLB; zinc 97.7 0.00087 3E-08 57.1 13.6 151 103-261 13-203 (334)
34 4b4t_K 26S protease regulatory 97.7 0.00065 2.2E-08 59.7 12.8 34 106-139 199-232 (428)
35 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.0013 4.4E-08 55.7 14.3 146 113-263 45-223 (322)
36 1sxj_A Activator 1 95 kDa subu 97.6 0.00087 3E-08 60.6 13.3 143 113-264 77-254 (516)
37 1sxj_C Activator 1 40 kDa subu 97.5 0.00096 3.3E-08 56.9 11.8 153 103-259 36-208 (340)
38 3d8b_A Fidgetin-like protein 1 97.5 0.0024 8.2E-08 54.8 14.2 148 112-265 116-297 (357)
39 3uk6_A RUVB-like 2; hexameric 97.5 0.00073 2.5E-08 58.1 10.9 47 213-262 253-302 (368)
40 3pfi_A Holliday junction ATP-d 97.5 0.002 6.8E-08 54.7 13.3 146 112-264 54-228 (338)
41 3eie_A Vacuolar protein sortin 97.5 0.00059 2E-08 57.8 9.8 145 113-263 51-228 (322)
42 3b9p_A CG5977-PA, isoform A; A 97.5 0.0025 8.5E-08 53.0 13.2 146 113-264 54-234 (297)
43 3syl_A Protein CBBX; photosynt 97.4 0.00064 2.2E-08 56.9 9.5 122 112-233 66-218 (309)
44 1d2n_A N-ethylmaleimide-sensit 97.4 0.0014 4.7E-08 53.9 11.3 29 110-138 61-89 (272)
45 2qp9_X Vacuolar protein sortin 97.3 0.0011 3.7E-08 57.0 9.6 144 113-262 84-260 (355)
46 3cf0_A Transitional endoplasmi 97.3 0.0028 9.7E-08 53.0 11.8 28 111-138 47-74 (301)
47 3vfd_A Spastin; ATPase, microt 97.3 0.0061 2.1E-07 52.9 14.3 146 113-264 148-327 (389)
48 1l8q_A Chromosomal replication 97.3 0.00034 1.2E-08 59.2 6.0 136 113-257 37-202 (324)
49 2zan_A Vacuolar protein sortin 97.2 0.0032 1.1E-07 55.7 12.1 67 189-256 269-337 (444)
50 1jbk_A CLPB protein; beta barr 97.2 0.00029 1E-08 54.1 4.7 37 103-139 33-69 (195)
51 2ce7_A Cell division protein F 97.2 0.011 3.9E-07 52.6 15.5 26 113-138 49-74 (476)
52 1lv7_A FTSH; alpha/beta domain 97.2 0.0077 2.6E-07 48.9 13.3 26 113-138 45-70 (257)
53 3cf2_A TER ATPase, transitiona 97.2 0.0023 8E-08 60.5 10.9 138 111-257 236-408 (806)
54 2p65_A Hypothetical protein PF 97.1 0.00038 1.3E-08 53.3 4.1 37 103-139 33-69 (187)
55 2gno_A DNA polymerase III, gam 97.1 0.0035 1.2E-07 52.6 10.2 126 103-232 8-152 (305)
56 3ec2_A DNA replication protein 97.1 0.00033 1.1E-08 53.9 3.3 26 113-138 38-63 (180)
57 2w58_A DNAI, primosome compone 97.0 0.00053 1.8E-08 53.7 4.3 36 114-151 55-90 (202)
58 3hu3_A Transitional endoplasmi 96.9 0.014 4.7E-07 52.3 13.2 151 103-262 228-414 (489)
59 3lw7_A Adenylate kinase relate 96.9 0.00054 1.9E-08 52.0 3.4 20 114-133 2-21 (179)
60 3kb2_A SPBC2 prophage-derived 96.9 0.00057 1.9E-08 51.9 3.5 25 114-138 2-26 (173)
61 3e70_C DPA, signal recognition 96.9 0.019 6.7E-07 48.5 13.1 59 111-171 127-186 (328)
62 1qhx_A CPT, protein (chloramph 96.9 0.00064 2.2E-08 52.0 3.6 25 114-138 4-28 (178)
63 1ly1_A Polynucleotide kinase; 96.8 0.00084 2.9E-08 51.3 3.5 22 114-135 3-24 (181)
64 3kl4_A SRP54, signal recogniti 96.8 0.015 5.2E-07 51.1 11.7 29 112-140 96-124 (433)
65 1kag_A SKI, shikimate kinase I 96.8 0.00082 2.8E-08 51.1 3.3 25 114-138 5-29 (173)
66 3vaa_A Shikimate kinase, SK; s 96.8 0.00096 3.3E-08 52.2 3.7 27 112-138 24-50 (199)
67 3t61_A Gluconokinase; PSI-biol 96.7 0.00081 2.8E-08 52.7 3.2 25 113-137 18-42 (202)
68 4eun_A Thermoresistant glucoki 96.7 0.00099 3.4E-08 52.2 3.7 27 111-137 27-53 (200)
69 1kgd_A CASK, peripheral plasma 96.7 0.001 3.4E-08 51.3 3.5 25 114-138 6-30 (180)
70 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 51.2 3.6 26 113-138 5-30 (185)
71 1zp6_A Hypothetical protein AT 96.7 0.00099 3.4E-08 51.5 3.5 24 113-136 9-32 (191)
72 1nks_A Adenylate kinase; therm 96.7 0.00099 3.4E-08 51.5 3.4 26 114-139 2-27 (194)
73 3c8u_A Fructokinase; YP_612366 96.7 0.0015 5E-08 51.6 4.4 29 111-139 20-48 (208)
74 3uie_A Adenylyl-sulfate kinase 96.7 0.0011 3.9E-08 51.8 3.6 28 111-138 23-50 (200)
75 3dm5_A SRP54, signal recogniti 96.7 0.018 6.2E-07 50.7 11.5 29 112-140 99-127 (443)
76 1ye8_A Protein THEP1, hypothet 96.6 0.0013 4.3E-08 50.8 3.5 24 115-138 2-25 (178)
77 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.3E-08 50.8 3.5 26 114-139 4-29 (192)
78 2rhm_A Putative kinase; P-loop 96.6 0.0014 4.8E-08 50.7 3.7 25 113-137 5-29 (193)
79 3t15_A Ribulose bisphosphate c 96.6 0.0016 5.3E-08 54.4 4.1 28 112-139 35-62 (293)
80 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.6E-08 51.2 3.5 24 115-138 2-25 (205)
81 3a00_A Guanylate kinase, GMP k 96.6 0.0013 4.6E-08 50.8 3.4 25 114-138 2-26 (186)
82 2xxa_A Signal recognition part 96.6 0.036 1.2E-06 48.7 12.9 29 112-140 99-127 (433)
83 2og2_A Putative signal recogni 96.6 0.011 3.9E-07 50.6 9.4 29 112-140 156-184 (359)
84 1ukz_A Uridylate kinase; trans 96.6 0.0018 6.2E-08 50.6 4.1 27 111-137 13-39 (203)
85 3tr0_A Guanylate kinase, GMP k 96.6 0.0014 4.9E-08 51.2 3.4 24 114-137 8-31 (205)
86 3iij_A Coilin-interacting nucl 96.6 0.0014 4.9E-08 50.2 3.4 26 113-138 11-36 (180)
87 2qor_A Guanylate kinase; phosp 96.5 0.0015 5.1E-08 51.3 3.4 25 113-137 12-36 (204)
88 3u61_B DNA polymerase accessor 96.5 0.011 3.9E-07 49.7 9.1 150 103-260 37-213 (324)
89 3tau_A Guanylate kinase, GMP k 96.5 0.0018 6E-08 51.1 3.8 27 112-138 7-33 (208)
90 1via_A Shikimate kinase; struc 96.5 0.0014 4.8E-08 50.0 3.1 25 114-138 5-29 (175)
91 1tev_A UMP-CMP kinase; ploop, 96.5 0.0016 5.6E-08 50.3 3.5 25 113-137 3-27 (196)
92 1knq_A Gluconate kinase; ALFA/ 96.5 0.0017 5.9E-08 49.5 3.5 25 113-137 8-32 (175)
93 2c95_A Adenylate kinase 1; tra 96.5 0.0018 6.1E-08 50.2 3.6 26 113-138 9-34 (196)
94 1y63_A LMAJ004144AAA protein; 96.5 0.0022 7.7E-08 49.4 4.1 25 112-136 9-33 (184)
95 2ze6_A Isopentenyl transferase 96.5 0.0017 5.7E-08 53.0 3.4 25 114-138 2-26 (253)
96 2bwj_A Adenylate kinase 5; pho 96.5 0.0018 6.3E-08 50.3 3.5 26 113-138 12-37 (199)
97 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.3E-08 50.2 3.0 25 114-138 3-27 (184)
98 2j41_A Guanylate kinase; GMP, 96.4 0.0022 7.4E-08 50.2 3.9 25 113-137 6-30 (207)
99 1cke_A CK, MSSA, protein (cyti 96.4 0.0019 6.4E-08 51.4 3.6 24 114-137 6-29 (227)
100 2bdt_A BH3686; alpha-beta prot 96.4 0.0018 6.3E-08 50.0 3.4 22 114-135 3-24 (189)
101 4gp7_A Metallophosphoesterase; 96.4 0.0014 4.6E-08 50.1 2.6 22 113-134 9-30 (171)
102 2if2_A Dephospho-COA kinase; a 96.4 0.0019 6.5E-08 50.5 3.5 22 114-135 2-23 (204)
103 2bbw_A Adenylate kinase 4, AK4 96.4 0.002 6.9E-08 52.1 3.7 26 113-138 27-52 (246)
104 1n0w_A DNA repair protein RAD5 96.4 0.0081 2.8E-07 48.1 7.3 57 113-170 24-84 (243)
105 1ex7_A Guanylate kinase; subst 96.4 0.0018 6E-08 50.3 3.2 25 114-138 2-26 (186)
106 2cdn_A Adenylate kinase; phosp 96.4 0.0024 8.3E-08 49.9 4.0 27 112-138 19-45 (201)
107 3asz_A Uridine kinase; cytidin 96.4 0.002 7E-08 50.6 3.6 27 112-138 5-31 (211)
108 1uf9_A TT1252 protein; P-loop, 96.4 0.0022 7.5E-08 50.0 3.8 26 111-136 6-31 (203)
109 2plr_A DTMP kinase, probable t 96.4 0.0022 7.4E-08 50.4 3.7 27 114-140 5-31 (213)
110 1lvg_A Guanylate kinase, GMP k 96.4 0.0017 5.9E-08 50.8 3.1 24 114-137 5-28 (198)
111 2vli_A Antibiotic resistance p 96.4 0.0015 5.3E-08 50.0 2.7 26 113-138 5-30 (183)
112 3n70_A Transport activator; si 96.4 0.0038 1.3E-07 46.1 4.7 26 114-139 25-50 (145)
113 2kjq_A DNAA-related protein; s 96.4 0.0016 5.3E-08 48.6 2.6 48 103-152 26-73 (149)
114 3cm0_A Adenylate kinase; ATP-b 96.4 0.0021 7.2E-08 49.4 3.4 24 114-137 5-28 (186)
115 1zuh_A Shikimate kinase; alpha 96.4 0.0022 7.5E-08 48.5 3.5 27 112-138 6-32 (168)
116 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0022 7.6E-08 52.4 3.7 26 113-138 4-29 (260)
117 1e6c_A Shikimate kinase; phosp 96.4 0.002 6.8E-08 48.9 3.2 25 114-138 3-27 (173)
118 2cvh_A DNA repair and recombin 96.4 0.0046 1.6E-07 48.7 5.5 44 113-161 20-63 (220)
119 2yvu_A Probable adenylyl-sulfa 96.4 0.0026 9E-08 49.0 3.9 29 112-140 12-40 (186)
120 3umf_A Adenylate kinase; rossm 96.4 0.0023 7.9E-08 50.9 3.6 27 112-138 28-54 (217)
121 4a74_A DNA repair and recombin 96.4 0.0077 2.6E-07 47.7 6.8 44 113-156 25-72 (231)
122 1ixz_A ATP-dependent metallopr 96.4 0.0077 2.6E-07 48.8 6.8 23 116-138 52-74 (254)
123 1qf9_A UMP/CMP kinase, protein 96.4 0.0023 7.7E-08 49.4 3.5 26 113-138 6-31 (194)
124 1gvn_B Zeta; postsegregational 96.4 0.0034 1.2E-07 52.2 4.8 27 111-137 31-57 (287)
125 2pbr_A DTMP kinase, thymidylat 96.4 0.0023 7.8E-08 49.4 3.5 25 114-138 1-25 (195)
126 2pt5_A Shikimate kinase, SK; a 96.4 0.0023 8E-08 48.3 3.5 24 115-138 2-25 (168)
127 1r6b_X CLPA protein; AAA+, N-t 96.3 0.043 1.5E-06 51.9 12.7 130 103-232 197-362 (758)
128 1qvr_A CLPB protein; coiled co 96.3 0.016 5.4E-07 55.7 9.7 37 103-139 181-217 (854)
129 3ney_A 55 kDa erythrocyte memb 96.3 0.0027 9.1E-08 49.7 3.5 27 112-138 18-44 (197)
130 1xjc_A MOBB protein homolog; s 96.3 0.0029 9.8E-08 48.2 3.6 29 112-140 3-31 (169)
131 1zd8_A GTP:AMP phosphotransfer 96.3 0.0026 9E-08 50.7 3.6 25 113-137 7-31 (227)
132 2hf9_A Probable hydrogenase ni 96.3 0.0029 9.9E-08 50.2 3.8 28 111-138 36-63 (226)
133 3hr8_A Protein RECA; alpha and 96.3 0.0075 2.6E-07 51.6 6.5 43 113-157 61-103 (356)
134 1nn5_A Similar to deoxythymidy 96.3 0.003 1E-07 49.7 3.8 29 112-140 8-36 (215)
135 1aky_A Adenylate kinase; ATP:A 96.3 0.0029 1E-07 50.2 3.8 26 113-138 4-29 (220)
136 2qt1_A Nicotinamide riboside k 96.3 0.0028 9.4E-08 49.8 3.5 25 113-137 21-45 (207)
137 1in4_A RUVB, holliday junction 96.3 0.0023 7.7E-08 54.5 3.2 49 213-262 174-222 (334)
138 1zak_A Adenylate kinase; ATP:A 96.3 0.0027 9.3E-08 50.4 3.5 27 112-138 4-30 (222)
139 2wwf_A Thymidilate kinase, put 96.3 0.0029 1E-07 49.7 3.7 27 113-139 10-36 (212)
140 3fb4_A Adenylate kinase; psych 96.2 0.0028 9.5E-08 50.1 3.5 24 115-138 2-25 (216)
141 2x8a_A Nuclear valosin-contain 96.2 0.0098 3.3E-07 49.0 6.9 23 116-138 47-69 (274)
142 1znw_A Guanylate kinase, GMP k 96.2 0.0028 9.7E-08 49.8 3.5 25 113-137 20-44 (207)
143 1gtv_A TMK, thymidylate kinase 96.2 0.0015 5.2E-08 51.4 1.8 25 114-138 1-25 (214)
144 1odf_A YGR205W, hypothetical 3 96.2 0.0033 1.1E-07 52.4 4.0 29 111-139 29-57 (290)
145 1jjv_A Dephospho-COA kinase; P 96.2 0.0026 9E-08 49.8 3.2 22 114-135 3-24 (206)
146 3dl0_A Adenylate kinase; phosp 96.2 0.0031 1E-07 49.8 3.6 23 115-137 2-24 (216)
147 1z6g_A Guanylate kinase; struc 96.2 0.0028 9.4E-08 50.4 3.1 25 113-137 23-47 (218)
148 1iy2_A ATP-dependent metallopr 96.2 0.011 3.7E-07 48.7 6.8 23 116-138 76-98 (278)
149 2z0h_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 48.7 3.5 25 115-139 2-26 (197)
150 2v54_A DTMP kinase, thymidylat 96.2 0.0036 1.2E-07 48.8 3.7 25 113-137 4-28 (204)
151 1rz3_A Hypothetical protein rb 96.1 0.0036 1.2E-07 49.0 3.6 29 111-139 20-48 (201)
152 3aez_A Pantothenate kinase; tr 96.1 0.0037 1.3E-07 52.6 3.8 29 111-139 88-116 (312)
153 3tlx_A Adenylate kinase 2; str 96.1 0.0038 1.3E-07 50.5 3.7 26 112-137 28-53 (243)
154 1uj2_A Uridine-cytidine kinase 96.1 0.0039 1.3E-07 50.7 3.8 28 111-138 20-47 (252)
155 2jeo_A Uridine-cytidine kinase 96.1 0.0039 1.3E-07 50.4 3.8 26 112-137 24-49 (245)
156 3fwy_A Light-independent proto 96.1 0.0035 1.2E-07 52.8 3.5 30 111-140 46-75 (314)
157 1cr0_A DNA primase/helicase; R 96.1 0.012 4E-07 49.0 6.7 52 112-167 34-86 (296)
158 1rj9_A FTSY, signal recognitio 96.1 0.0064 2.2E-07 50.9 5.1 29 112-140 101-129 (304)
159 1htw_A HI0065; nucleotide-bind 96.1 0.0039 1.3E-07 46.9 3.4 24 114-137 34-57 (158)
160 1s96_A Guanylate kinase, GMP k 96.1 0.0039 1.3E-07 49.6 3.6 26 113-138 16-41 (219)
161 2f1r_A Molybdopterin-guanine d 96.1 0.0031 1.1E-07 48.2 2.8 27 114-140 3-29 (171)
162 2wsm_A Hydrogenase expression/ 96.1 0.0033 1.1E-07 49.7 3.1 27 112-138 29-55 (221)
163 4e22_A Cytidylate kinase; P-lo 96.1 0.0039 1.3E-07 50.7 3.6 25 113-137 27-51 (252)
164 2px0_A Flagellar biosynthesis 96.1 0.014 4.8E-07 48.7 7.0 28 112-139 104-131 (296)
165 3sr0_A Adenylate kinase; phosp 96.0 0.0041 1.4E-07 49.0 3.5 25 114-138 1-25 (206)
166 2ffh_A Protein (FFH); SRP54, s 96.0 0.12 4.3E-06 45.2 13.2 29 112-140 97-125 (425)
167 3bh0_A DNAB-like replicative h 96.0 0.016 5.4E-07 48.8 7.3 51 113-167 68-118 (315)
168 2p5t_B PEZT; postsegregational 96.0 0.0033 1.1E-07 51.1 2.8 27 112-138 31-57 (253)
169 3be4_A Adenylate kinase; malar 96.0 0.0041 1.4E-07 49.3 3.2 26 113-138 5-30 (217)
170 1m7g_A Adenylylsulfate kinase; 96.0 0.0045 1.6E-07 48.8 3.4 28 111-138 23-50 (211)
171 3tqc_A Pantothenate kinase; bi 96.0 0.0052 1.8E-07 51.8 4.0 28 111-138 90-117 (321)
172 2i3b_A HCR-ntpase, human cance 96.0 0.0039 1.3E-07 48.4 3.0 24 115-138 3-26 (189)
173 3tif_A Uncharacterized ABC tra 95.9 0.0054 1.8E-07 49.4 3.8 27 113-139 31-57 (235)
174 1e4v_A Adenylate kinase; trans 95.9 0.0048 1.6E-07 48.7 3.4 23 115-137 2-24 (214)
175 1sq5_A Pantothenate kinase; P- 95.9 0.013 4.3E-07 49.2 6.2 28 111-138 78-105 (308)
176 1j8m_F SRP54, signal recogniti 95.9 0.057 1.9E-06 45.0 10.0 37 113-151 98-134 (297)
177 2grj_A Dephospho-COA kinase; T 95.9 0.0053 1.8E-07 47.8 3.5 26 112-137 11-36 (192)
178 2xb4_A Adenylate kinase; ATP-b 95.9 0.0051 1.7E-07 49.0 3.5 23 115-137 2-24 (223)
179 3lda_A DNA repair protein RAD5 95.9 0.024 8.3E-07 49.3 8.0 58 113-171 178-239 (400)
180 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0063 2.2E-07 48.3 4.0 47 113-163 23-69 (235)
181 1vht_A Dephospho-COA kinase; s 95.9 0.0058 2E-07 48.3 3.8 23 113-135 4-26 (218)
182 2ehv_A Hypothetical protein PH 95.9 0.0046 1.6E-07 49.8 3.2 23 113-135 30-52 (251)
183 2onk_A Molybdate/tungstate ABC 95.9 0.0081 2.8E-07 48.5 4.6 26 114-139 25-50 (240)
184 1ak2_A Adenylate kinase isoenz 95.9 0.006 2E-07 48.9 3.8 27 112-138 15-41 (233)
185 2pez_A Bifunctional 3'-phospho 95.9 0.0054 1.8E-07 46.9 3.4 27 113-139 5-31 (179)
186 3b9q_A Chloroplast SRP recepto 95.9 0.0057 1.9E-07 51.2 3.7 29 112-140 99-127 (302)
187 2qgz_A Helicase loader, putati 95.9 0.0097 3.3E-07 49.9 5.2 37 113-151 152-189 (308)
188 2f6r_A COA synthase, bifunctio 95.8 0.006 2.1E-07 50.5 3.8 23 112-134 74-96 (281)
189 3io5_A Recombination and repai 95.8 0.017 5.9E-07 48.5 6.5 54 115-173 30-83 (333)
190 1tue_A Replication protein E1; 95.8 0.007 2.4E-07 47.5 3.8 36 103-138 47-83 (212)
191 3r20_A Cytidylate kinase; stru 95.8 0.0061 2.1E-07 49.0 3.5 26 113-138 9-34 (233)
192 2zr9_A Protein RECA, recombina 95.8 0.011 3.7E-07 50.6 5.3 44 112-157 60-103 (349)
193 2v3c_C SRP54, signal recogniti 95.8 0.006 2E-07 53.7 3.7 27 112-138 98-124 (432)
194 3lnc_A Guanylate kinase, GMP k 95.8 0.0036 1.2E-07 50.1 2.1 25 113-137 27-52 (231)
195 1np6_A Molybdopterin-guanine d 95.8 0.011 3.7E-07 45.2 4.7 27 113-139 6-32 (174)
196 3nwj_A ATSK2; P loop, shikimat 95.8 0.0053 1.8E-07 49.9 3.1 25 114-138 49-73 (250)
197 3ake_A Cytidylate kinase; CMP 95.8 0.0063 2.2E-07 47.5 3.5 24 115-138 4-27 (208)
198 1vma_A Cell division protein F 95.8 0.012 4.2E-07 49.3 5.4 29 112-140 103-131 (306)
199 2dr3_A UPF0273 protein PH0284; 95.7 0.01 3.4E-07 47.6 4.7 47 113-163 23-69 (247)
200 1v5w_A DMC1, meiotic recombina 95.7 0.024 8.4E-07 48.2 7.3 59 112-171 121-183 (343)
201 1b0u_A Histidine permease; ABC 95.7 0.0072 2.5E-07 49.5 3.8 27 113-139 32-58 (262)
202 2j37_W Signal recognition part 95.7 0.053 1.8E-06 48.6 9.7 29 112-140 100-128 (504)
203 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0099 3.4E-07 50.7 4.7 30 109-138 20-49 (359)
204 1ls1_A Signal recognition part 95.7 0.1 3.6E-06 43.3 10.9 29 112-140 97-125 (295)
205 3zvl_A Bifunctional polynucleo 95.7 0.0066 2.2E-07 53.3 3.6 26 112-137 257-282 (416)
206 3b85_A Phosphate starvation-in 95.7 0.0053 1.8E-07 48.5 2.7 23 114-136 23-45 (208)
207 2pcj_A ABC transporter, lipopr 95.7 0.006 2.1E-07 48.7 3.0 27 113-139 30-56 (224)
208 3gfo_A Cobalt import ATP-bindi 95.7 0.0079 2.7E-07 49.6 3.8 27 113-139 34-60 (275)
209 1u94_A RECA protein, recombina 95.7 0.013 4.6E-07 50.1 5.3 44 112-157 62-105 (356)
210 1ji0_A ABC transporter; ATP bi 95.6 0.0083 2.9E-07 48.4 3.8 27 113-139 32-58 (240)
211 2r62_A Cell division protease 95.6 0.0064 2.2E-07 49.7 3.2 27 113-139 44-70 (268)
212 1pzn_A RAD51, DNA repair and r 95.6 0.02 6.7E-07 49.0 6.3 57 112-169 130-190 (349)
213 3pxg_A Negative regulator of g 95.6 0.0079 2.7E-07 53.6 4.0 36 103-138 191-226 (468)
214 1g6h_A High-affinity branched- 95.6 0.0084 2.9E-07 48.9 3.8 27 113-139 33-59 (257)
215 2ff7_A Alpha-hemolysin translo 95.6 0.0085 2.9E-07 48.6 3.8 27 113-139 35-61 (247)
216 2olj_A Amino acid ABC transpor 95.6 0.0084 2.9E-07 49.1 3.8 28 112-139 49-76 (263)
217 2z43_A DNA repair and recombin 95.6 0.028 9.5E-07 47.4 7.2 58 113-171 107-168 (324)
218 3d3q_A TRNA delta(2)-isopenten 95.6 0.0075 2.6E-07 51.2 3.5 25 114-138 8-32 (340)
219 4g1u_C Hemin import ATP-bindin 95.6 0.0087 3E-07 49.1 3.8 27 113-139 37-63 (266)
220 4fcw_A Chaperone protein CLPB; 95.6 0.013 4.5E-07 48.8 5.0 37 114-152 48-84 (311)
221 4eaq_A DTMP kinase, thymidylat 95.6 0.014 4.6E-07 46.8 4.8 28 112-139 25-52 (229)
222 1ltq_A Polynucleotide kinase; 95.6 0.0077 2.6E-07 50.1 3.5 23 114-136 3-25 (301)
223 2ixe_A Antigen peptide transpo 95.6 0.0091 3.1E-07 49.2 3.8 27 113-139 45-71 (271)
224 3co5_A Putative two-component 95.6 0.0024 8.4E-08 47.1 0.3 25 114-138 28-52 (143)
225 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0077 2.6E-07 49.0 3.3 24 113-136 29-52 (250)
226 1vpl_A ABC transporter, ATP-bi 95.5 0.0095 3.2E-07 48.6 3.8 27 113-139 41-67 (256)
227 2cbz_A Multidrug resistance-as 95.5 0.0073 2.5E-07 48.7 3.1 27 113-139 31-57 (237)
228 1oix_A RAS-related protein RAB 95.5 0.0083 2.8E-07 46.3 3.3 26 113-138 29-54 (191)
229 3crm_A TRNA delta(2)-isopenten 95.5 0.0085 2.9E-07 50.5 3.5 25 114-138 6-30 (323)
230 2pze_A Cystic fibrosis transme 95.5 0.0069 2.4E-07 48.5 2.8 27 113-139 34-60 (229)
231 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0089 3E-07 50.3 3.5 24 113-136 123-146 (331)
232 2dyk_A GTP-binding protein; GT 95.5 0.0091 3.1E-07 44.2 3.3 24 114-137 2-25 (161)
233 1sgw_A Putative ABC transporte 95.5 0.0061 2.1E-07 48.3 2.5 26 114-139 36-61 (214)
234 2i1q_A DNA repair and recombin 95.5 0.028 9.5E-07 47.3 6.7 59 112-171 97-169 (322)
235 2bjv_A PSP operon transcriptio 95.5 0.013 4.5E-07 47.7 4.6 26 114-139 30-55 (265)
236 2zu0_C Probable ATP-dependent 95.5 0.0082 2.8E-07 49.3 3.2 24 113-136 46-69 (267)
237 2eyu_A Twitching motility prot 95.5 0.011 3.7E-07 48.4 4.0 27 112-138 24-50 (261)
238 2ihy_A ABC transporter, ATP-bi 95.5 0.01 3.5E-07 49.1 3.8 27 113-139 47-73 (279)
239 1ofh_A ATP-dependent HSL prote 95.5 0.008 2.7E-07 50.0 3.2 26 113-138 50-75 (310)
240 3p32_A Probable GTPase RV1496/ 95.4 0.016 5.3E-07 49.7 5.0 28 111-138 77-104 (355)
241 3sop_A Neuronal-specific septi 95.4 0.0093 3.2E-07 49.1 3.4 24 115-138 4-27 (270)
242 2yz2_A Putative ABC transporte 95.4 0.011 3.7E-07 48.5 3.8 27 113-139 33-59 (266)
243 3pxi_A Negative regulator of g 95.4 0.031 1.1E-06 52.9 7.4 24 115-138 523-546 (758)
244 2yhs_A FTSY, cell division pro 95.4 0.015 5.2E-07 51.8 4.9 41 112-155 292-332 (503)
245 1zu4_A FTSY; GTPase, signal re 95.4 0.018 6E-07 48.6 5.1 30 111-140 103-132 (320)
246 1mv5_A LMRA, multidrug resista 95.4 0.0078 2.7E-07 48.7 2.8 26 113-138 28-53 (243)
247 4tmk_A Protein (thymidylate ki 95.4 0.029 9.8E-07 44.4 6.0 28 114-141 4-31 (213)
248 2ocp_A DGK, deoxyguanosine kin 95.4 0.011 3.7E-07 47.6 3.7 26 113-138 2-27 (241)
249 2v9p_A Replication protein E1; 95.4 0.0098 3.3E-07 49.8 3.5 27 111-137 124-150 (305)
250 2f9l_A RAB11B, member RAS onco 95.4 0.01 3.5E-07 46.0 3.4 25 113-137 5-29 (199)
251 3exa_A TRNA delta(2)-isopenten 95.3 0.011 3.9E-07 49.4 3.7 25 113-137 3-27 (322)
252 4edh_A DTMP kinase, thymidylat 95.3 0.032 1.1E-06 44.1 6.2 32 113-145 6-37 (213)
253 1a7j_A Phosphoribulokinase; tr 95.3 0.0062 2.1E-07 50.7 2.1 27 112-138 4-30 (290)
254 3lv8_A DTMP kinase, thymidylat 95.3 0.029 9.8E-07 45.1 5.9 31 113-144 27-57 (236)
255 2wji_A Ferrous iron transport 95.3 0.01 3.4E-07 44.6 3.0 23 114-136 4-26 (165)
256 3a8t_A Adenylate isopentenyltr 95.3 0.011 3.7E-07 50.1 3.5 26 113-138 40-65 (339)
257 2ghi_A Transport protein; mult 95.3 0.0098 3.4E-07 48.6 3.1 26 113-138 46-71 (260)
258 2qi9_C Vitamin B12 import ATP- 95.3 0.0088 3E-07 48.6 2.7 25 114-138 27-51 (249)
259 2nq2_C Hypothetical ABC transp 95.3 0.0092 3.1E-07 48.6 2.8 27 113-139 31-57 (253)
260 1nlf_A Regulatory protein REPA 95.3 0.011 3.7E-07 48.8 3.3 26 113-138 30-55 (279)
261 3fvq_A Fe(3+) IONS import ATP- 95.2 0.016 5.4E-07 49.7 4.3 27 113-139 30-56 (359)
262 3foz_A TRNA delta(2)-isopenten 95.2 0.013 4.3E-07 49.1 3.6 27 112-138 9-35 (316)
263 3hws_A ATP-dependent CLP prote 95.2 0.011 3.7E-07 50.8 3.3 26 113-138 51-76 (363)
264 1yrb_A ATP(GTP)binding protein 95.2 0.015 5.3E-07 47.1 4.1 26 113-138 14-39 (262)
265 1svi_A GTP-binding protein YSX 95.2 0.014 4.8E-07 44.8 3.7 28 110-137 20-47 (195)
266 1q3t_A Cytidylate kinase; nucl 95.2 0.015 5.1E-07 46.6 3.8 26 112-137 15-40 (236)
267 3nh6_A ATP-binding cassette SU 95.2 0.011 3.9E-07 49.4 3.2 28 112-139 79-106 (306)
268 1xp8_A RECA protein, recombina 95.1 0.025 8.5E-07 48.6 5.3 43 113-157 74-116 (366)
269 1svm_A Large T antigen; AAA+ f 95.1 0.016 5.4E-07 50.1 4.0 27 111-137 167-193 (377)
270 1fzq_A ADP-ribosylation factor 95.1 0.019 6.6E-07 43.7 4.1 26 111-136 14-39 (181)
271 2zej_A Dardarin, leucine-rich 95.1 0.0092 3.1E-07 45.7 2.2 22 115-136 4-25 (184)
272 2wjg_A FEOB, ferrous iron tran 95.1 0.014 4.7E-07 44.6 3.2 24 113-136 7-30 (188)
273 1um8_A ATP-dependent CLP prote 95.1 0.013 4.4E-07 50.5 3.3 26 113-138 72-97 (376)
274 2c9o_A RUVB-like 1; hexameric 95.0 0.015 5.2E-07 51.6 3.8 48 213-263 360-410 (456)
275 2ged_A SR-beta, signal recogni 95.0 0.017 5.9E-07 44.3 3.7 26 112-137 47-72 (193)
276 2dhr_A FTSH; AAA+ protein, hex 95.0 0.03 1E-06 50.2 5.7 24 115-138 66-89 (499)
277 1moz_A ARL1, ADP-ribosylation 95.0 0.015 5.2E-07 44.1 3.4 33 104-136 8-41 (183)
278 4a1f_A DNAB helicase, replicat 95.0 0.051 1.7E-06 46.1 6.9 51 113-167 46-96 (338)
279 2lkc_A Translation initiation 95.0 0.024 8.1E-07 42.7 4.4 27 111-137 6-32 (178)
280 1u0j_A DNA replication protein 95.0 0.024 8.3E-07 46.3 4.6 34 103-136 92-127 (267)
281 2ce2_X GTPase HRAS; signaling 95.0 0.016 5.3E-07 42.9 3.3 23 115-137 5-27 (166)
282 3io3_A DEHA2D07832P; chaperone 95.0 0.037 1.3E-06 47.2 6.0 34 105-138 10-43 (348)
283 3tui_C Methionine import ATP-b 95.0 0.021 7.1E-07 49.0 4.3 28 112-139 53-80 (366)
284 3rlf_A Maltose/maltodextrin im 95.0 0.021 7.1E-07 49.3 4.3 27 113-139 29-55 (381)
285 3end_A Light-independent proto 95.0 0.034 1.2E-06 46.3 5.6 41 110-152 38-78 (307)
286 2yyz_A Sugar ABC transporter, 95.0 0.021 7.2E-07 48.9 4.3 27 113-139 29-55 (359)
287 1nrj_B SR-beta, signal recogni 95.0 0.019 6.4E-07 45.1 3.8 27 111-137 10-36 (218)
288 2pjz_A Hypothetical protein ST 95.0 0.012 4.2E-07 48.1 2.7 25 113-137 30-54 (263)
289 1z47_A CYSA, putative ABC-tran 94.9 0.022 7.4E-07 48.8 4.3 27 113-139 41-67 (355)
290 2qmh_A HPR kinase/phosphorylas 94.9 0.014 4.8E-07 45.5 2.9 26 113-138 34-59 (205)
291 3hjn_A DTMP kinase, thymidylat 94.9 0.046 1.6E-06 42.6 5.9 26 115-140 2-27 (197)
292 2it1_A 362AA long hypothetical 94.9 0.022 7.5E-07 48.9 4.3 27 113-139 29-55 (362)
293 1zj6_A ADP-ribosylation factor 94.9 0.022 7.5E-07 43.5 4.0 28 109-136 12-39 (187)
294 2vp4_A Deoxynucleoside kinase; 94.9 0.011 3.8E-07 47.3 2.3 25 112-136 19-43 (230)
295 3geh_A MNME, tRNA modification 94.9 0.042 1.5E-06 48.7 6.3 23 115-137 226-248 (462)
296 1g29_1 MALK, maltose transport 94.9 0.023 7.7E-07 49.0 4.3 27 113-139 29-55 (372)
297 1z2a_A RAS-related protein RAB 94.9 0.018 6.1E-07 42.8 3.3 25 113-137 5-29 (168)
298 1lw7_A Transcriptional regulat 94.9 0.016 5.6E-07 49.7 3.5 27 113-139 170-196 (365)
299 3iqw_A Tail-anchored protein t 94.9 0.04 1.4E-06 46.7 5.8 46 107-154 10-55 (334)
300 3kta_A Chromosome segregation 94.8 0.019 6.7E-07 43.7 3.5 25 113-137 26-50 (182)
301 2qm8_A GTPase/ATPase; G protei 94.8 0.037 1.3E-06 47.0 5.5 29 111-139 53-81 (337)
302 3ld9_A DTMP kinase, thymidylat 94.8 0.041 1.4E-06 43.8 5.4 31 109-139 17-47 (223)
303 1v43_A Sugar-binding transport 94.8 0.024 8.3E-07 48.8 4.3 27 113-139 37-63 (372)
304 3d31_A Sulfate/molybdate ABC t 94.8 0.02 6.7E-07 48.9 3.7 27 113-139 26-52 (348)
305 1p5z_B DCK, deoxycytidine kina 94.8 0.0098 3.4E-07 48.6 1.8 27 111-137 22-48 (263)
306 2gj8_A MNME, tRNA modification 94.8 0.017 5.9E-07 43.7 3.0 24 114-137 5-28 (172)
307 2r44_A Uncharacterized protein 94.8 0.014 4.6E-07 49.4 2.7 25 114-138 47-71 (331)
308 1u8z_A RAS-related protein RAL 94.8 0.018 6.1E-07 42.7 3.1 24 114-137 5-28 (168)
309 2orw_A Thymidine kinase; TMTK, 94.8 0.021 7.2E-07 44.0 3.5 26 114-139 4-29 (184)
310 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.013 4.3E-07 52.7 2.5 25 114-138 42-66 (500)
311 3kjh_A CO dehydrogenase/acetyl 94.8 0.043 1.5E-06 43.9 5.5 41 115-157 2-42 (254)
312 3m6a_A ATP-dependent protease 94.8 0.017 6E-07 52.4 3.5 27 112-138 107-133 (543)
313 2b6h_A ADP-ribosylation factor 94.8 0.021 7.3E-07 44.0 3.5 33 104-136 20-52 (192)
314 3con_A GTPase NRAS; structural 94.7 0.02 6.7E-07 43.8 3.3 24 114-137 22-45 (190)
315 3gmt_A Adenylate kinase; ssgci 94.7 0.021 7.1E-07 45.7 3.5 26 113-138 8-33 (230)
316 3pxi_A Negative regulator of g 94.7 0.02 7E-07 54.1 4.0 35 103-137 191-225 (758)
317 3pqc_A Probable GTP-binding pr 94.7 0.021 7.3E-07 43.6 3.5 26 112-137 22-47 (195)
318 2bbs_A Cystic fibrosis transme 94.7 0.017 5.8E-07 48.0 3.0 27 113-139 64-90 (290)
319 1c1y_A RAS-related protein RAP 94.7 0.019 6.6E-07 42.6 3.1 23 115-137 5-27 (167)
320 1r8s_A ADP-ribosylation factor 94.7 0.021 7.3E-07 42.3 3.3 23 115-137 2-24 (164)
321 2h92_A Cytidylate kinase; ross 94.7 0.02 7E-07 45.1 3.3 24 114-137 4-27 (219)
322 1cp2_A CP2, nitrogenase iron p 94.7 0.023 7.9E-07 46.3 3.7 37 114-152 2-38 (269)
323 2nzj_A GTP-binding protein REM 94.7 0.019 6.7E-07 43.0 3.1 25 113-137 4-28 (175)
324 1kao_A RAP2A; GTP-binding prot 94.7 0.02 6.7E-07 42.4 3.1 24 114-137 4-27 (167)
325 2fn4_A P23, RAS-related protei 94.7 0.023 8E-07 42.8 3.5 26 112-137 8-33 (181)
326 1ek0_A Protein (GTP-binding pr 94.7 0.02 6.9E-07 42.6 3.1 23 115-137 5-27 (170)
327 1oxx_K GLCV, glucose, ABC tran 94.6 0.018 6.3E-07 49.2 3.2 27 113-139 31-57 (353)
328 2r8r_A Sensor protein; KDPD, P 94.6 0.023 8E-07 45.2 3.5 27 114-140 7-33 (228)
329 1g8p_A Magnesium-chelatase 38 94.6 0.012 4.1E-07 49.9 2.0 24 115-138 47-70 (350)
330 1z08_A RAS-related protein RAB 94.6 0.022 7.5E-07 42.5 3.3 25 113-137 6-30 (170)
331 1f6b_A SAR1; gtpases, N-termin 94.6 0.028 9.7E-07 43.5 4.0 25 112-136 24-48 (198)
332 1z0j_A RAB-22, RAS-related pro 94.6 0.02 7E-07 42.6 3.1 24 114-137 7-30 (170)
333 1m7b_A RND3/RHOE small GTP-bin 94.6 0.02 6.8E-07 43.6 3.0 25 113-137 7-31 (184)
334 2axn_A 6-phosphofructo-2-kinas 94.6 0.023 7.8E-07 51.3 3.8 27 112-138 34-60 (520)
335 1ky3_A GTP-binding protein YPT 94.6 0.023 7.9E-07 42.8 3.3 26 112-137 7-32 (182)
336 1nij_A Hypothetical protein YJ 94.6 0.019 6.4E-07 48.4 3.0 26 112-137 3-28 (318)
337 2afh_E Nitrogenase iron protei 94.6 0.024 8.2E-07 46.8 3.7 28 113-140 2-29 (289)
338 2qtf_A Protein HFLX, GTP-bindi 94.6 0.12 4.2E-06 44.3 8.2 28 111-138 177-204 (364)
339 1g16_A RAS-related protein SEC 94.6 0.024 8.1E-07 42.2 3.3 24 114-137 4-27 (170)
340 3q85_A GTP-binding protein REM 94.6 0.022 7.4E-07 42.5 3.1 22 114-135 3-24 (169)
341 2erx_A GTP-binding protein DI- 94.5 0.021 7.1E-07 42.6 2.9 24 114-137 4-27 (172)
342 2e87_A Hypothetical protein PH 94.5 0.74 2.5E-05 39.1 13.0 27 111-137 165-191 (357)
343 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.022 7.5E-07 42.8 3.1 25 113-137 7-31 (177)
344 2hxs_A RAB-26, RAS-related pro 94.5 0.024 8.1E-07 42.7 3.2 25 113-137 6-30 (178)
345 3ihw_A Centg3; RAS, centaurin, 94.5 0.022 7.5E-07 43.6 3.1 25 113-137 20-44 (184)
346 3eph_A TRNA isopentenyltransfe 94.5 0.022 7.6E-07 49.4 3.3 24 114-137 3-26 (409)
347 2obl_A ESCN; ATPase, hydrolase 94.5 0.026 8.8E-07 48.2 3.7 28 112-139 70-97 (347)
348 1upt_A ARL1, ADP-ribosylation 94.5 0.029 9.8E-07 41.9 3.6 25 113-137 7-31 (171)
349 1ksh_A ARF-like protein 2; sma 94.5 0.021 7.1E-07 43.5 2.8 27 111-137 16-42 (186)
350 2www_A Methylmalonic aciduria 94.4 0.027 9.2E-07 48.1 3.7 27 112-138 73-99 (349)
351 1r2q_A RAS-related protein RAB 94.4 0.024 8.2E-07 42.1 3.1 24 114-137 7-30 (170)
352 3c5c_A RAS-like protein 12; GD 94.4 0.024 8.1E-07 43.5 3.1 25 113-137 21-45 (187)
353 1m2o_B GTP-binding protein SAR 94.4 0.026 8.7E-07 43.4 3.3 25 113-137 23-47 (190)
354 1g41_A Heat shock protein HSLU 94.4 0.023 7.9E-07 50.0 3.3 27 113-139 50-76 (444)
355 3jvv_A Twitching mobility prot 94.4 0.029 9.8E-07 48.1 3.8 27 112-138 122-148 (356)
356 3q72_A GTP-binding protein RAD 94.4 0.023 7.9E-07 42.2 2.8 23 114-136 3-25 (166)
357 3t1o_A Gliding protein MGLA; G 94.4 0.026 8.9E-07 43.2 3.2 25 113-137 14-38 (198)
358 4dsu_A GTPase KRAS, isoform 2B 94.3 0.025 8.6E-07 43.0 3.1 24 114-137 5-28 (189)
359 1z0f_A RAB14, member RAS oncog 94.3 0.026 8.8E-07 42.4 3.1 25 113-137 15-39 (179)
360 3kkq_A RAS-related protein M-R 94.3 0.028 9.7E-07 42.6 3.3 25 113-137 18-42 (183)
361 2zts_A Putative uncharacterize 94.3 0.043 1.5E-06 43.9 4.6 49 113-164 30-78 (251)
362 3gd7_A Fusion complex of cysti 94.3 0.025 8.4E-07 49.1 3.2 25 113-137 47-71 (390)
363 2bme_A RAB4A, RAS-related prot 94.3 0.026 8.8E-07 42.9 3.0 26 113-138 10-35 (186)
364 2iwr_A Centaurin gamma 1; ANK 94.3 0.021 7E-07 43.1 2.4 24 114-137 8-31 (178)
365 2oil_A CATX-8, RAS-related pro 94.3 0.026 9.1E-07 43.2 3.1 25 113-137 25-49 (193)
366 2atv_A RERG, RAS-like estrogen 94.3 0.032 1.1E-06 43.0 3.5 26 112-137 27-52 (196)
367 2cjw_A GTP-binding protein GEM 94.3 0.029 9.8E-07 43.3 3.3 24 113-136 6-29 (192)
368 3bc1_A RAS-related protein RAB 94.3 0.027 9.2E-07 42.9 3.1 25 113-137 11-35 (195)
369 3t5g_A GTP-binding protein RHE 94.3 0.023 7.9E-07 43.0 2.7 25 113-137 6-30 (181)
370 2y8e_A RAB-protein 6, GH09086P 94.3 0.027 9.2E-07 42.3 3.0 24 114-137 15-38 (179)
371 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.027 9.3E-07 42.6 3.1 24 114-137 6-29 (186)
372 3clv_A RAB5 protein, putative; 94.3 0.036 1.2E-06 42.5 3.8 26 112-137 6-31 (208)
373 1pui_A ENGB, probable GTP-bind 94.2 0.018 6.1E-07 44.9 2.0 30 108-137 21-50 (210)
374 1bif_A 6-phosphofructo-2-kinas 94.2 0.029 1E-06 49.9 3.6 29 111-139 37-65 (469)
375 3fdi_A Uncharacterized protein 94.2 0.032 1.1E-06 43.6 3.5 27 113-139 6-32 (201)
376 2gza_A Type IV secretion syste 94.2 0.025 8.7E-07 48.5 3.1 26 114-139 176-201 (361)
377 2p67_A LAO/AO transport system 94.2 0.058 2E-06 45.8 5.3 28 111-138 54-81 (341)
378 3v9p_A DTMP kinase, thymidylat 94.2 0.023 8E-07 45.4 2.7 28 113-140 25-52 (227)
379 2cxx_A Probable GTP-binding pr 94.2 0.025 8.6E-07 43.1 2.8 24 114-137 2-25 (190)
380 2qu8_A Putative nucleolar GTP- 94.2 0.028 9.6E-07 44.6 3.2 27 111-137 27-53 (228)
381 1p9r_A General secretion pathw 94.2 0.066 2.2E-06 46.9 5.7 30 110-139 164-193 (418)
382 2a9k_A RAS-related protein RAL 94.2 0.029 9.9E-07 42.5 3.1 25 113-137 18-42 (187)
383 1ojl_A Transcriptional regulat 94.2 0.028 9.4E-07 47.0 3.2 25 114-138 26-50 (304)
384 2ewv_A Twitching motility prot 94.2 0.041 1.4E-06 47.4 4.3 28 111-138 134-161 (372)
385 3bwd_D RAC-like GTP-binding pr 94.2 0.03 1E-06 42.3 3.1 25 113-137 8-32 (182)
386 2efe_B Small GTP-binding prote 94.2 0.029 1E-06 42.3 3.0 25 113-137 12-36 (181)
387 4hlc_A DTMP kinase, thymidylat 94.1 0.072 2.5E-06 41.7 5.4 25 114-138 3-27 (205)
388 3dz8_A RAS-related protein RAB 94.1 0.031 1.1E-06 42.8 3.2 25 113-137 23-47 (191)
389 3lxx_A GTPase IMAP family memb 94.1 0.029 9.9E-07 44.9 3.1 27 112-138 28-54 (239)
390 2fh5_B SR-beta, signal recogni 94.1 0.033 1.1E-06 43.5 3.4 26 112-137 6-31 (214)
391 2g6b_A RAS-related protein RAB 94.1 0.03 1E-06 42.2 3.1 26 113-138 10-35 (180)
392 2qnr_A Septin-2, protein NEDD5 94.1 0.023 8E-07 47.4 2.6 22 115-136 20-41 (301)
393 2bov_A RAla, RAS-related prote 94.1 0.03 1E-06 43.3 3.1 25 113-137 14-38 (206)
394 1ega_A Protein (GTP-binding pr 94.1 0.028 9.6E-07 46.9 3.1 25 113-137 8-32 (301)
395 3k53_A Ferrous iron transport 94.1 0.031 1.1E-06 45.8 3.2 25 113-137 3-27 (271)
396 3llm_A ATP-dependent RNA helic 94.0 0.14 4.9E-06 40.7 7.1 21 114-134 77-97 (235)
397 3tqf_A HPR(Ser) kinase; transf 94.0 0.035 1.2E-06 42.2 3.1 23 114-136 17-39 (181)
398 1vg8_A RAS-related protein RAB 94.0 0.034 1.2E-06 43.0 3.3 26 112-137 7-32 (207)
399 2fg5_A RAB-22B, RAS-related pr 94.0 0.031 1.1E-06 42.9 3.0 25 113-137 23-47 (192)
400 2npi_A Protein CLP1; CLP1-PCF1 94.0 0.028 9.7E-07 49.8 3.1 25 114-138 139-163 (460)
401 1gwn_A RHO-related GTP-binding 94.0 0.031 1.1E-06 43.6 3.0 25 113-137 28-52 (205)
402 2ew1_A RAS-related protein RAB 94.0 0.032 1.1E-06 43.4 3.0 25 113-137 26-50 (201)
403 1ypw_A Transitional endoplasmi 94.0 0.028 9.6E-07 53.5 3.2 28 111-138 236-263 (806)
404 3cr8_A Sulfate adenylyltranfer 94.0 0.025 8.6E-07 51.3 2.7 27 113-139 369-395 (552)
405 2gf9_A RAS-related protein RAB 94.0 0.034 1.2E-06 42.5 3.1 25 113-137 22-46 (189)
406 1zd9_A ADP-ribosylation factor 93.9 0.034 1.2E-06 42.5 3.1 26 113-138 22-47 (188)
407 3oes_A GTPase rhebl1; small GT 93.9 0.036 1.2E-06 42.9 3.3 27 112-138 23-49 (201)
408 3tmk_A Thymidylate kinase; pho 93.9 0.039 1.3E-06 43.7 3.5 27 113-139 5-31 (216)
409 3reg_A RHO-like small GTPase; 93.9 0.034 1.2E-06 42.7 3.1 26 113-138 23-48 (194)
410 3tkl_A RAS-related protein RAB 93.9 0.051 1.7E-06 41.6 4.1 26 113-138 16-41 (196)
411 3tw8_B RAS-related protein RAB 93.9 0.031 1.1E-06 42.0 2.8 26 112-137 8-33 (181)
412 2p5s_A RAS and EF-hand domain 93.9 0.039 1.3E-06 42.6 3.4 27 111-137 26-52 (199)
413 3cbq_A GTP-binding protein REM 93.9 0.03 1E-06 43.3 2.6 23 112-134 22-44 (195)
414 1zbd_A Rabphilin-3A; G protein 93.9 0.032 1.1E-06 43.1 2.8 25 113-137 8-32 (203)
415 2a5j_A RAS-related protein RAB 93.9 0.036 1.2E-06 42.5 3.1 25 113-137 21-45 (191)
416 2dpy_A FLII, flagellum-specifi 93.9 0.04 1.4E-06 48.6 3.7 29 111-139 155-183 (438)
417 3llu_A RAS-related GTP-binding 93.8 0.036 1.2E-06 42.7 3.1 26 112-137 19-44 (196)
418 1z06_A RAS-related protein RAB 93.8 0.037 1.3E-06 42.3 3.1 26 112-137 19-44 (189)
419 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.028 9.6E-07 47.6 2.5 27 114-140 172-198 (330)
420 2qag_B Septin-6, protein NEDD5 93.8 0.03 1E-06 49.1 2.7 22 115-136 44-65 (427)
421 1x3s_A RAS-related protein RAB 93.8 0.041 1.4E-06 42.0 3.3 24 114-137 16-39 (195)
422 2yv5_A YJEQ protein; hydrolase 93.8 0.041 1.4E-06 45.9 3.5 32 103-138 158-189 (302)
423 2r6a_A DNAB helicase, replicat 93.8 0.047 1.6E-06 48.4 4.0 49 113-164 203-251 (454)
424 4dhe_A Probable GTP-binding pr 93.7 0.026 8.9E-07 44.4 2.1 27 111-137 27-53 (223)
425 4dzz_A Plasmid partitioning pr 93.7 0.077 2.6E-06 41.0 4.8 39 114-154 2-41 (206)
426 2gf0_A GTP-binding protein DI- 93.7 0.053 1.8E-06 41.6 3.8 26 112-137 7-32 (199)
427 2o52_A RAS-related protein RAB 93.7 0.034 1.2E-06 43.0 2.7 25 113-137 25-49 (200)
428 1tq4_A IIGP1, interferon-induc 93.7 0.042 1.4E-06 48.0 3.5 25 113-137 69-93 (413)
429 2q3h_A RAS homolog gene family 93.7 0.035 1.2E-06 42.8 2.8 25 113-137 20-44 (201)
430 2rcn_A Probable GTPase ENGC; Y 93.7 0.039 1.3E-06 47.2 3.2 25 114-138 216-240 (358)
431 2bcg_Y Protein YP2, GTP-bindin 93.7 0.038 1.3E-06 42.8 3.0 25 113-137 8-32 (206)
432 3iby_A Ferrous iron transport 93.6 0.042 1.4E-06 44.7 3.2 24 114-137 2-25 (256)
433 3fkq_A NTRC-like two-domain pr 93.6 0.077 2.6E-06 45.6 5.0 41 111-153 141-182 (373)
434 4gzl_A RAS-related C3 botulinu 93.6 0.047 1.6E-06 42.4 3.3 27 112-138 29-55 (204)
435 4bas_A ADP-ribosylation factor 93.6 0.044 1.5E-06 42.1 3.1 26 112-137 16-41 (199)
436 2g3y_A GTP-binding protein GEM 93.6 0.042 1.4E-06 43.3 3.0 23 113-135 37-59 (211)
437 1m8p_A Sulfate adenylyltransfe 93.6 0.058 2E-06 49.2 4.3 27 112-138 395-421 (573)
438 2h17_A ADP-ribosylation factor 93.6 0.039 1.3E-06 41.9 2.8 25 113-137 21-45 (181)
439 2atx_A Small GTP binding prote 93.5 0.043 1.5E-06 42.1 3.0 25 113-137 18-42 (194)
440 2fv8_A H6, RHO-related GTP-bin 93.5 0.042 1.4E-06 42.7 3.0 25 113-137 25-49 (207)
441 2hup_A RAS-related protein RAB 93.5 0.044 1.5E-06 42.5 3.0 25 113-137 29-53 (201)
442 2j1l_A RHO-related GTP-binding 93.5 0.039 1.3E-06 43.3 2.7 25 113-137 34-58 (214)
443 1yqt_A RNAse L inhibitor; ATP- 93.5 0.043 1.5E-06 49.7 3.3 26 114-139 313-338 (538)
444 2j0v_A RAC-like GTP-binding pr 93.5 0.044 1.5E-06 42.7 3.0 26 112-137 8-33 (212)
445 3cph_A RAS-related protein SEC 93.5 0.051 1.7E-06 42.2 3.4 25 113-137 20-44 (213)
446 3cwq_A Para family chromosome 93.4 0.13 4.6E-06 40.2 5.8 41 115-158 2-43 (209)
447 4dkx_A RAS-related protein RAB 93.4 0.046 1.6E-06 43.2 3.1 23 115-137 15-37 (216)
448 1x6v_B Bifunctional 3'-phospho 93.4 0.05 1.7E-06 50.0 3.7 27 112-138 51-77 (630)
449 2gco_A H9, RHO-related GTP-bin 93.4 0.046 1.6E-06 42.3 3.0 25 113-137 25-49 (201)
450 1yqt_A RNAse L inhibitor; ATP- 93.4 0.045 1.5E-06 49.6 3.3 25 114-138 48-72 (538)
451 3iev_A GTP-binding protein ERA 93.4 0.042 1.4E-06 46.0 2.9 27 111-137 8-34 (308)
452 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.061 2.1E-06 39.8 3.5 25 113-137 23-47 (149)
453 2xtp_A GTPase IMAP family memb 93.4 0.049 1.7E-06 44.1 3.3 26 112-137 21-46 (260)
454 3k1j_A LON protease, ATP-depen 93.4 0.083 2.8E-06 48.6 5.1 27 114-140 61-87 (604)
455 3ice_A Transcription terminati 93.4 0.097 3.3E-06 45.2 5.1 50 104-154 164-215 (422)
456 2b8t_A Thymidine kinase; deoxy 93.3 0.058 2E-06 42.9 3.5 28 113-140 12-39 (223)
457 3bgw_A DNAB-like replicative h 93.3 0.079 2.7E-06 46.7 4.7 49 113-165 197-245 (444)
458 3ozx_A RNAse L inhibitor; ATP 93.3 0.039 1.3E-06 50.0 2.8 28 112-139 24-51 (538)
459 3q3j_B RHO-related GTP-binding 93.3 0.049 1.7E-06 42.7 3.1 25 113-137 27-51 (214)
460 3gee_A MNME, tRNA modification 93.3 0.024 8.3E-07 50.5 1.4 22 115-136 235-256 (476)
461 2q6t_A DNAB replication FORK h 93.3 0.15 5.1E-06 45.0 6.5 51 113-166 200-250 (444)
462 3euj_A Chromosome partition pr 93.3 0.055 1.9E-06 48.2 3.6 26 114-139 30-55 (483)
463 3ozx_A RNAse L inhibitor; ATP 93.3 0.041 1.4E-06 49.9 2.8 26 114-139 295-320 (538)
464 3hdt_A Putative kinase; struct 93.3 0.066 2.2E-06 42.6 3.7 27 112-138 13-39 (223)
465 2fu5_C RAS-related protein RAB 93.3 0.028 9.4E-07 42.6 1.5 25 113-137 8-32 (183)
466 1jr3_D DNA polymerase III, del 93.3 0.37 1.3E-05 40.6 8.7 156 104-261 9-183 (343)
467 2il1_A RAB12; G-protein, GDP, 93.2 0.035 1.2E-06 42.7 2.0 25 113-137 26-50 (192)
468 3b1v_A Ferrous iron uptake tra 93.2 0.05 1.7E-06 44.7 3.1 24 113-136 3-26 (272)
469 3zq6_A Putative arsenical pump 93.2 0.13 4.4E-06 43.3 5.7 27 114-140 15-41 (324)
470 1wf3_A GTP-binding protein; GT 93.2 0.05 1.7E-06 45.4 3.1 25 113-137 7-31 (301)
471 1u0l_A Probable GTPase ENGC; p 93.2 0.046 1.6E-06 45.6 2.8 34 103-139 162-195 (301)
472 2qag_C Septin-7; cell cycle, c 93.1 0.039 1.3E-06 48.3 2.4 24 115-138 33-56 (418)
473 3j16_B RLI1P; ribosome recycli 93.1 0.052 1.8E-06 49.9 3.3 27 113-139 103-129 (608)
474 3bk7_A ABC transporter ATP-bin 93.1 0.053 1.8E-06 49.8 3.3 26 114-139 383-408 (607)
475 2f7s_A C25KG, RAS-related prot 93.1 0.048 1.7E-06 42.6 2.7 25 113-137 25-49 (217)
476 2h57_A ADP-ribosylation factor 93.0 0.037 1.3E-06 42.3 1.8 25 113-137 21-45 (190)
477 2x77_A ADP-ribosylation factor 93.0 0.066 2.3E-06 40.8 3.3 26 111-136 20-45 (189)
478 1g8f_A Sulfate adenylyltransfe 93.0 0.052 1.8E-06 48.7 3.0 28 112-139 394-421 (511)
479 3lxw_A GTPase IMAP family memb 93.0 0.059 2E-06 43.5 3.1 25 113-137 21-45 (247)
480 3j16_B RLI1P; ribosome recycli 92.9 0.06 2.1E-06 49.5 3.3 26 114-139 379-404 (608)
481 2woj_A ATPase GET3; tail-ancho 92.9 0.21 7.1E-06 42.6 6.5 28 111-138 16-43 (354)
482 1t9h_A YLOQ, probable GTPase E 92.9 0.03 1E-06 46.9 1.2 25 114-138 174-198 (307)
483 3b5x_A Lipid A export ATP-bind 92.9 0.083 2.9E-06 48.3 4.3 27 113-139 369-395 (582)
484 3ch4_B Pmkase, phosphomevalona 92.9 0.09 3.1E-06 41.0 3.8 26 112-137 10-35 (202)
485 2aka_B Dynamin-1; fusion prote 92.8 0.087 3E-06 43.5 4.0 26 112-137 25-50 (299)
486 3b60_A Lipid A export ATP-bind 92.8 0.053 1.8E-06 49.6 2.9 26 114-139 370-395 (582)
487 3cpj_B GTP-binding protein YPT 92.8 0.065 2.2E-06 42.2 3.0 25 113-137 13-37 (223)
488 2woo_A ATPase GET3; tail-ancho 92.8 0.17 5.8E-06 42.7 5.8 30 111-140 17-46 (329)
489 2ck3_D ATP synthase subunit be 92.6 0.28 9.5E-06 43.4 6.9 64 103-167 142-207 (482)
490 3k9g_A PF-32 protein; ssgcid, 92.5 0.16 5.3E-06 41.3 5.1 42 111-155 25-67 (267)
491 3bk7_A ABC transporter ATP-bin 92.5 0.059 2E-06 49.5 2.8 25 114-138 118-142 (607)
492 3a1s_A Iron(II) transport prot 92.5 0.076 2.6E-06 43.2 3.2 25 113-137 5-29 (258)
493 3upu_A ATP-dependent DNA helic 92.5 0.11 3.6E-06 46.1 4.3 37 103-140 36-72 (459)
494 1ihu_A Arsenical pump-driving 92.4 0.19 6.4E-06 46.0 6.1 40 111-152 6-45 (589)
495 1tf7_A KAIC; homohexamer, hexa 92.4 0.069 2.4E-06 48.2 3.1 20 114-133 40-59 (525)
496 1mky_A Probable GTP-binding pr 92.4 0.088 3E-06 46.4 3.7 25 113-137 180-204 (439)
497 4b3f_X DNA-binding protein smu 92.3 0.14 4.6E-06 47.5 5.0 49 114-165 206-254 (646)
498 1sky_E F1-ATPase, F1-ATP synth 92.3 0.14 4.7E-06 45.4 4.7 52 103-155 140-192 (473)
499 2gk6_A Regulator of nonsense t 92.3 0.14 4.9E-06 47.2 5.1 50 114-165 196-245 (624)
500 1ypw_A Transitional endoplasmi 92.3 0.049 1.7E-06 51.9 1.9 27 113-139 511-537 (806)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=1.8e-28 Score=224.80 Aligned_cols=167 Identities=13% Similarity=0.167 Sum_probs=130.6
Q ss_pred HHHHhhcCC---CccEEEEEcCCCCcHHHHHHHHHH--hcccCCCCCeEEEEEecCcC--CHHHHHHHHHHHhCCCcc--
Q 041612 103 NILSALEDP---DVNMLGIYGMGGIGKTMLAEEIAR--KVKSDKLFDQVVFVEVSQNQ--DIRKIQEEIGDKLGLKFH-- 173 (276)
Q Consensus 103 ~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~~~-- 173 (276)
+|.++|..+ +.++|+|+||||+||||||+.+|+ +...+.+|+.++|+++++.+ +...++..|+.+++....
T Consensus 139 ~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~ 218 (549)
T 2a5y_B 139 RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLL 218 (549)
T ss_dssp HHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCT
T ss_pred HHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccc
Confidence 777777543 689999999999999999999998 56667789999999999986 789999999999986521
Q ss_pred ---cccc---hhhhhhcc-------c----------------cCCCCcEEEEEeccccccccCCCCCCceeCCCCCHHHH
Q 041612 174 ---EESE---SGRANSLF-------T----------------HGHKGCKVLLTARSQDVLSGKMDSRPNFSIGVLNEEEA 224 (276)
Q Consensus 174 ---~~~~---~~~~~~l~-------~----------------~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~L~~~ea 224 (276)
.... ......+. + ...+||+||||||+..++.........|+|++|++++|
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea 298 (549)
T 2a5y_B 219 NFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDEC 298 (549)
T ss_dssp TCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHH
T ss_pred cccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHH
Confidence 0000 00001110 0 12379999999999999765322446799999999999
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHhCC
Q 041612 225 WSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALRNK 269 (276)
Q Consensus 225 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~~~ 269 (276)
|+||.+.++....++++.+++.+|+++|+|+|||++++|++|+.+
T Consensus 299 ~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 299 YDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp HHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 999999998544457888899999999999999999999998744
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.87 E-value=4.4e-22 Score=197.82 Aligned_cols=165 Identities=21% Similarity=0.328 Sum_probs=121.8
Q ss_pred HHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHhccc-CC-CCCeEEEEEecCcCC--HHHHHHHHHHHhCCCcccc-
Q 041612 103 NILSALE--DPDVNMLGIYGMGGIGKTMLAEEIARKVKS-DK-LFDQVVFVEVSQNQD--IRKIQEEIGDKLGLKFHEE- 175 (276)
Q Consensus 103 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~l~~~i~~~l~~~~~~~- 175 (276)
+|.+.|. +++.++|+|+||||+||||||+++|++... .. .|+.++|+++++..+ ....+..++..+.......
T Consensus 135 ~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (1249)
T 3sfz_A 135 AIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQ 214 (1249)
T ss_dssp HHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCS
T ss_pred HHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhccccc
Confidence 6777764 457899999999999999999999988643 33 357888999998543 3444666777665432110
Q ss_pred ----cchhhhhhcc-----------------------ccCCCCcEEEEEeccccccccCCCCCCceeCCC-CCHHHHHHH
Q 041612 176 ----SESGRANSLF-----------------------THGHKGCKVLLTARSQDVLSGKMDSRPNFSIGV-LNEEEAWSL 227 (276)
Q Consensus 176 ----~~~~~~~~l~-----------------------~~~~~gs~IivTTR~~~va~~~~~~~~~~~l~~-L~~~ea~~L 227 (276)
........+. ....+||+||||||++.++.........+.+.+ |++++|++|
T Consensus 215 ~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l 294 (1249)
T 3sfz_A 215 RLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEI 294 (1249)
T ss_dssp SCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHH
Confidence 1111111111 045789999999999999755566777899996 999999999
Q ss_pred HHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHhCC
Q 041612 228 FKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALRNK 269 (276)
Q Consensus 228 f~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~~~ 269 (276)
|...++.. .+++.+.+.+|+++|+|+||||+++|++|+.+
T Consensus 295 ~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~ 334 (1249)
T 3sfz_A 295 LSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDF 334 (1249)
T ss_dssp HHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHS
T ss_pred HHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcC
Confidence 99988632 23445578999999999999999999999943
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.86 E-value=9.4e-23 Score=193.21 Aligned_cols=164 Identities=22% Similarity=0.279 Sum_probs=115.6
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCe-EEEEEecCcCCHHHHHHHHHHHhCCC---ccccc-
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQ-VVFVEVSQNQDIRKIQEEIGDKLGLK---FHEES- 176 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~l~~~i~~~l~~~---~~~~~- 176 (276)
+|.++|.. ++.++|+|+||||+||||||+.+|++.+.+.+|+. ++|+++++.++...++..|...++.. .....
T Consensus 139 eL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d 218 (1221)
T 1vt4_I 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218 (1221)
T ss_dssp HHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSC
T ss_pred HHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccc
Confidence 66666654 56899999999999999999999988766666986 99999999999888877776643211 10000
Q ss_pred -------c----hhhhhhcc-----c----------------cCCCCcEEEEEeccccccccCCCCCCceeCC------C
Q 041612 177 -------E----SGRANSLF-----T----------------HGHKGCKVLLTARSQDVLSGKMDSRPNFSIG------V 218 (276)
Q Consensus 177 -------~----~~~~~~l~-----~----------------~~~~gs~IivTTR~~~va~~~~~~~~~~~l~------~ 218 (276)
. ...+..+. + ...+||+||||||++.++.. +.....|.++ +
T Consensus 219 ~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~-l~g~~vy~LeL~d~dL~ 297 (1221)
T 1vt4_I 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMT 297 (1221)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHH-HHHHSSCEEEECSSSSC
T ss_pred cccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHh-cCCCeEEEecCccccCC
Confidence 0 00111110 0 23489999999999998642 2222356666 9
Q ss_pred CCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHhCC--CccccC
Q 041612 219 LNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALRNK--RLFEWK 275 (276)
Q Consensus 219 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~~~--~~~~W~ 275 (276)
|+++|||+||.+..... .. ++..++ |+|+||||.++|++|+.+ +.++|+
T Consensus 298 LS~eEA~eLF~~~~g~~--~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 298 LTPDEVKSLLLKYLDCR--PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp CCHHHHHHHHHHHHCCC--TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred cCHHHHHHHHHHHcCCC--HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 99999999999986432 11 223333 999999999999999933 667774
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=169.76 Aligned_cols=161 Identities=24% Similarity=0.386 Sum_probs=110.8
Q ss_pred HHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHhccc-CCCC-CeEEEEEecCcCCHHHHHHH---HHHHhCCCc---
Q 041612 103 NILSALE--DPDVNMLGIYGMGGIGKTMLAEEIARKVKS-DKLF-DQVVFVEVSQNQDIRKIQEE---IGDKLGLKF--- 172 (276)
Q Consensus 103 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~l~~~---i~~~l~~~~--- 172 (276)
+|...|. .++.++|+|+|+||+||||||..++++... ..+| +.++|++++.. +...++.. ++..++...
T Consensus 135 ~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~ 213 (591)
T 1z6t_A 135 AIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFS 213 (591)
T ss_dssp HHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccc
Confidence 6666665 356889999999999999999999987643 4458 58999999876 33333333 344444210
Q ss_pred --ccccchhhhhhc-----------------------cccCCCCcEEEEEeccccccccCCCCCCceeC---CCCCHHHH
Q 041612 173 --HEESESGRANSL-----------------------FTHGHKGCKVLLTARSQDVLSGKMDSRPNFSI---GVLNEEEA 224 (276)
Q Consensus 173 --~~~~~~~~~~~l-----------------------~~~~~~gs~IivTTR~~~va~~~~~~~~~~~l---~~L~~~ea 224 (276)
...........+ .....+||+||||||+..++.... ...+.+ ++|+.+|+
T Consensus 214 ~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~--~~~~~v~~l~~L~~~ea 291 (591)
T 1z6t_A 214 QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM--GPKYVVPVESSLGKEKG 291 (591)
T ss_dssp SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC--SCEEEEECCSSCCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC--CCceEeecCCCCCHHHH
Confidence 000000000000 014578999999999998865322 233443 68999999
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHhC
Q 041612 225 WSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALRN 268 (276)
Q Consensus 225 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~~ 268 (276)
++||...++.. .....+.+.+|+++|+|+|||+..+|++|+.
T Consensus 292 ~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~ 333 (591)
T 1z6t_A 292 LEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRD 333 (591)
T ss_dssp HHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhc
Confidence 99999998732 2223456889999999999999999999983
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.37 E-value=6.9e-13 Score=95.62 Aligned_cols=79 Identities=6% Similarity=0.109 Sum_probs=66.8
Q ss_pred HHHHHHHhhhHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHh
Q 041612 8 IVVEVVKCMVPPAYRRICYLRKSKYTSNLQNLKSEVDNLKSERVRTEHQVDEAKRKG-EEIEENVENWLARANNVIEAAD 86 (276)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~~~~a~~~~-~~~~~~~~~wl~~l~~~~~~~e 86 (276)
+++.++++|.+.+.+++..+ .+++++++.|++.|..|++++.+|+.+. ...++.++.|+.++++++||+|
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~---------~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLH---------KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 35667888999999988877 4667777788899999999999999874 2358899999999999999999
Q ss_pred hhhhhhhhh
Q 041612 87 NFTKDEATT 95 (276)
Q Consensus 87 d~ld~~~~~ 95 (276)
|++|+|.+.
T Consensus 73 D~iD~f~~~ 81 (115)
T 3qfl_A 73 DVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999765
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.83 E-value=8.1e-08 Score=82.26 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=52.1
Q ss_pred CCcEEEEEeccccccc------c----CC-CCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHH
Q 041612 190 KGCKVLLTARSQDVLS------G----KM-DSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVS 258 (276)
Q Consensus 190 ~gs~IivTTR~~~va~------~----~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa 258 (276)
++.++|+|++...... . .. .....+.+.+|+.+|+.+++........... ..+....++..|+|+|++
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDGIPGW 241 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTTCHHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHH
Confidence 5788999988654211 0 11 1123789999999999999987643111111 124578899999999999
Q ss_pred HHHHHHHH
Q 041612 259 IVTIARAL 266 (276)
Q Consensus 259 i~~i~~~L 266 (276)
+..++..+
T Consensus 242 l~~~~~~~ 249 (350)
T 2qen_A 242 LVVFGVEY 249 (350)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 7
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.82 E-value=7.1e-08 Score=76.92 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=93.3
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCC-----Ccc----
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGL-----KFH---- 173 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~-----~~~---- 173 (276)
.+..++.....+.+.|+|++|+|||+||+.+++.......-...+.++.+.......+...+...... ...
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 107 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIF 107 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEE
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEE
Confidence 55555555555569999999999999999999876433111223444444444444443333322211 100
Q ss_pred --cc--cchh---hhhhccccCCCCcEEEEEecccccc-ccCCCCCCceeCCCCCHHHHHHHHHHhhC--CCCCChhHHH
Q 041612 174 --EE--SESG---RANSLFTHGHKGCKVLLTARSQDVL-SGKMDSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDSEFQS 243 (276)
Q Consensus 174 --~~--~~~~---~~~~l~~~~~~gs~IivTTR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~~ 243 (276)
+. .... .+..+......++++|+||+..... .........+.+.+++.++..+++.+.+. ....+ .+
T Consensus 108 iDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~ 184 (226)
T 2chg_A 108 LDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT---ED 184 (226)
T ss_dssp EETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HH
T ss_pred EeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HH
Confidence 00 0001 1112222455678899988765421 11112223789999999999999988764 21222 24
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHH
Q 041612 244 IARDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 244 ~~~~i~~~c~G~PLai~~i~~~L 266 (276)
....+++.++|.|..+..+...+
T Consensus 185 ~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 185 GLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 56778899999999765554443
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.80 E-value=6.3e-08 Score=83.10 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=51.6
Q ss_pred CCcEEEEEecccccccc----------CCCC-CCceeCCCCCHHHHHHHHHHhhCC-CCCChhHHHHHHHHHHHcCCCcH
Q 041612 190 KGCKVLLTARSQDVLSG----------KMDS-RPNFSIGVLNEEEAWSLFKKMAGD-YIEDSEFQSIARDVAKECAGLPV 257 (276)
Q Consensus 190 ~gs~IivTTR~~~va~~----------~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~G~PL 257 (276)
++.++|+|++....... ..+. ...+.+.+|+.+++.+++...+.. ....... ..|+..|+|+|+
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~ 244 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPG 244 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHH
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHH
Confidence 47889999987642110 1111 247899999999999999876421 1111221 689999999999
Q ss_pred HHHHHHHHHh
Q 041612 258 SIVTIARALR 267 (276)
Q Consensus 258 ai~~i~~~L~ 267 (276)
++..++..+.
T Consensus 245 ~l~~~~~~~~ 254 (357)
T 2fna_A 245 WLTYFGFIYL 254 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999987764
No 9
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.73 E-value=1.3e-07 Score=83.06 Aligned_cols=150 Identities=15% Similarity=0.152 Sum_probs=90.1
Q ss_pred CccEEEE--EcCCCCcHHHHHHHHHHhcccC---CCCC-eEEEEEecCcCCHHHHHHHHHHHhCCCcccc----------
Q 041612 112 DVNMLGI--YGMGGIGKTMLAEEIARKVKSD---KLFD-QVVFVEVSQNQDIRKIQEEIGDKLGLKFHEE---------- 175 (276)
Q Consensus 112 ~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---------- 175 (276)
..+.+.| +|++|+|||+|++.+++..... ..|+ ..+|++.....+...++..++.+++......
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 4556777 9999999999999999886542 0123 3577776666677777777777665431100
Q ss_pred ----------------cch-----------hhhhhccc---cC---C--CCcEEEEEecccccccc--------CCCCCC
Q 041612 176 ----------------SES-----------GRANSLFT---HG---H--KGCKVLLTARSQDVLSG--------KMDSRP 212 (276)
Q Consensus 176 ----------------~~~-----------~~~~~l~~---~~---~--~gs~IivTTR~~~va~~--------~~~~~~ 212 (276)
++. ..+..+.. .. . ....||+||+...+... ......
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~ 208 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGF 208 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCC
Confidence 000 00100111 11 2 34458888875542110 011122
Q ss_pred ceeCCCCCHHHHHHHHHHhhC---C-CCCChhHHHHHHHHHHHcC------CCcHHHHHHHH
Q 041612 213 NFSIGVLNEEEAWSLFKKMAG---D-YIEDSEFQSIARDVAKECA------GLPVSIVTIAR 264 (276)
Q Consensus 213 ~~~l~~L~~~ea~~Lf~~~~~---~-~~~~~~~~~~~~~i~~~c~------G~PLai~~i~~ 264 (276)
.+.+++|+.++.+++|...+. . ...+ .+....|++.|+ |.|..+..+..
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~ 267 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALK 267 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 389999999999999976542 2 1122 345778888898 99976555543
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.72 E-value=2.6e-07 Score=74.49 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=93.9
Q ss_pred HHHHhhcCC-CccEEEEEcCCCCcHHHHHHHHHHhcccCCCC-------------------CeEEEEEecCcCCHHHHHH
Q 041612 103 NILSALEDP-DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLF-------------------DQVVFVEVSQNQDIRKIQE 162 (276)
Q Consensus 103 ~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~l~~ 162 (276)
.+...+... ..+.+.|+|++|+|||||++.+++.......+ ...+.+..... .......
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTR 112 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCG-GGHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCccc-ccHHHHH
Confidence 344444333 24589999999999999999998876543111 11222222221 2233344
Q ss_pred HHHHHhCCCc----------ccc--cchhhhhhcc---ccCCCCcEEEEEeccccccc-cCCCCCCceeCCCCCHHHHHH
Q 041612 163 EIGDKLGLKF----------HEE--SESGRANSLF---THGHKGCKVLLTARSQDVLS-GKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 163 ~i~~~l~~~~----------~~~--~~~~~~~~l~---~~~~~gs~IivTTR~~~va~-~~~~~~~~~~l~~L~~~ea~~ 226 (276)
.++..+.... ++. ........+. .....+..+|+||+...... ........+.+++++.++..+
T Consensus 113 ~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~ 192 (250)
T 1njg_A 113 DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 192 (250)
T ss_dssp HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHH
Confidence 5555543211 000 0111111222 24456788899887654221 112224578999999999999
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 227 LFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 227 Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
++...+...... -..+....|++.|+|.|..+..+...+.
T Consensus 193 ~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 193 QLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 998877421111 1124577899999999999888766543
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.62 E-value=2.3e-07 Score=80.46 Aligned_cols=149 Identities=16% Similarity=0.133 Sum_probs=83.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccCCC-CCeEEEEEecCcCCHHHHHHHHHHHhCCCccc--------------
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKL-FDQVVFVEVSQNQDIRKIQEEIGDKLGLKFHE-------------- 174 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------------- 174 (276)
....+.+.|+|++|+|||||++.+++....... -...+|++.....+...++..++..++.....
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVK 121 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 345678999999999999999999988754310 12456776554444444444433333221100
Q ss_pred ------------ccc---------hhhhhhccc-c---CCCCcEEEEEeccccccccCC-----CC-CCceeCCCCCHHH
Q 041612 175 ------------ESE---------SGRANSLFT-H---GHKGCKVLLTARSQDVLSGKM-----DS-RPNFSIGVLNEEE 223 (276)
Q Consensus 175 ------------~~~---------~~~~~~l~~-~---~~~gs~IivTTR~~~va~~~~-----~~-~~~~~l~~L~~~e 223 (276)
.++ ......+.. . ...+..+|+||+......... .. ...+.+++++.++
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 000 011111111 1 344567788887664322111 11 1478999999999
Q ss_pred HHHHHHHhhC----CCCCChhHHHHHHHHHHHcC---CCcHHHHH
Q 041612 224 AWSLFKKMAG----DYIEDSEFQSIARDVAKECA---GLPVSIVT 261 (276)
Q Consensus 224 a~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~---G~PLai~~ 261 (276)
..++|...+. ....++ +....++..++ |.|..+..
T Consensus 202 ~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHH
Confidence 9999987653 122233 34556666666 99884443
No 12
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=5.8e-07 Score=76.08 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=90.9
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhC---CCc----ccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLG---LKF----HEE 175 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~---~~~----~~~ 175 (276)
.+..++..+..+.+.++|++|+|||++|+.+++...........++++.+.......+ +.++..+. ... ...
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~v 110 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKKLHLPPGKHKI 110 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCCCCCTTCCEE
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhccccCCCCCceE
Confidence 5566666665555999999999999999999988643211112444444443343333 33333221 110 100
Q ss_pred ---cch-----hhh---hhccccCCCCcEEEEEeccccc-cccCCCCCCceeCCCCCHHHHHHHHHHhhC--CCCCChhH
Q 041612 176 ---SES-----GRA---NSLFTHGHKGCKVLLTARSQDV-LSGKMDSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDSEF 241 (276)
Q Consensus 176 ---~~~-----~~~---~~l~~~~~~gs~IivTTR~~~v-a~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~ 241 (276)
++. ... .........++.+|+||....- ..........+.+.+++.++..+++...+. ....+
T Consensus 111 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--- 187 (323)
T 1sxj_B 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT--- 187 (323)
T ss_dssp EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---
T ss_pred EEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCC---
Confidence 111 111 1222245567888888866432 111122234799999999999999988764 11222
Q ss_pred HHHHHHHHHHcCCCcH-HHHHHHH
Q 041612 242 QSIARDVAKECAGLPV-SIVTIAR 264 (276)
Q Consensus 242 ~~~~~~i~~~c~G~PL-ai~~i~~ 264 (276)
.+....+++.|+|.|. |+..+..
T Consensus 188 ~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 188 NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2456789999999995 4454443
No 13
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.50 E-value=5.5e-07 Score=78.21 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=89.6
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHhcccC-----CC-CCeEEEEEecCcC-CHHHHHHHHHHHh-------------
Q 041612 109 EDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD-----KL-FDQVVFVEVSQNQ-DIRKIQEEIGDKL------------- 168 (276)
Q Consensus 109 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~-f~~~~wv~~~~~~-~~~~l~~~i~~~l------------- 168 (276)
.....+.+.|+|++|+|||+||+.+++..... +. ....+|++..... +...++..++..+
T Consensus 41 ~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 120 (384)
T 2qby_B 41 KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLG 120 (384)
T ss_dssp TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTH
T ss_pred cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHH
Confidence 34556789999999999999999999876332 11 2356777766655 6666665655544
Q ss_pred ----------CCCc-----ccccc------hhh-hhhccccCCCCcEEEEEeccccccccC-----CCCCCceeCCCCCH
Q 041612 169 ----------GLKF-----HEESE------SGR-ANSLFTHGHKGCKVLLTARSQDVLSGK-----MDSRPNFSIGVLNE 221 (276)
Q Consensus 169 ----------~~~~-----~~~~~------~~~-~~~l~~~~~~gs~IivTTR~~~va~~~-----~~~~~~~~l~~L~~ 221 (276)
.... ++... ... ...+.... .+..||+||+........ ......+.+++++.
T Consensus 121 ~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 121 EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 1100 00000 001 11112222 678899998875321110 11123799999999
Q ss_pred HHHHHHHHHhhC----CCCCChhHHHHHHHHHHHcC---CCcH-HHHHHHH
Q 041612 222 EEAWSLFKKMAG----DYIEDSEFQSIARDVAKECA---GLPV-SIVTIAR 264 (276)
Q Consensus 222 ~ea~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~---G~PL-ai~~i~~ 264 (276)
++..++|...+. ....++ +....+++.|+ |.|. |+..+-.
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999998752 122333 34556777777 8877 4444433
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=4.5e-06 Score=72.47 Aligned_cols=145 Identities=13% Similarity=0.174 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCccccc-----------------
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFHEES----------------- 176 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~----------------- 176 (276)
+.+.|+|++|+|||||++.+++...... -...+|++.+...+...++..++..++.......
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER 123 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhc
Confidence 3899999999999999999998876541 1245677766666777777777776654221100
Q ss_pred ---------c-----hhhhhhccc---c-CC---CCcEEEEEeccccccccCCC------CCCceeCCCCCHHHHHHHHH
Q 041612 177 ---------E-----SGRANSLFT---H-GH---KGCKVLLTARSQDVLSGKMD------SRPNFSIGVLNEEEAWSLFK 229 (276)
Q Consensus 177 ---------~-----~~~~~~l~~---~-~~---~gs~IivTTR~~~va~~~~~------~~~~~~l~~L~~~ea~~Lf~ 229 (276)
+ ......+.. . .. .+..||++|+.......... ....+.+++++.++..+++.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 0 000011111 1 11 46788888876643221110 11368999999999999998
Q ss_pred HhhCC----CCCChhHHHHHHHHHHHc---------CCCcHHHHHH
Q 041612 230 KMAGD----YIEDSEFQSIARDVAKEC---------AGLPVSIVTI 262 (276)
Q Consensus 230 ~~~~~----~~~~~~~~~~~~~i~~~c---------~G~PLai~~i 262 (276)
..+.. ...+ .+....++..+ .|.|..+..+
T Consensus 204 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 204 DRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred HHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 87531 1222 34567888888 7887554444
No 15
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.34 E-value=3.5e-06 Score=72.95 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=82.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC----CCCCeEEEEEecCcCCHHHHHHHHHHHhCCCccc------------
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD----KLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFHE------------ 174 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~------------ 174 (276)
...+.+.|+|++|+|||+||+.+++..... +.-...+|++.....+...++..++.+++.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456789999999999999999999887432 0012456777666556555555555444321100
Q ss_pred --------------ccch----------hhhhhccccC-----CCCcEEEEEecccccccc----C-CCCC-CceeCCCC
Q 041612 175 --------------ESES----------GRANSLFTHG-----HKGCKVLLTARSQDVLSG----K-MDSR-PNFSIGVL 219 (276)
Q Consensus 175 --------------~~~~----------~~~~~l~~~~-----~~gs~IivTTR~~~va~~----~-~~~~-~~~~l~~L 219 (276)
.++. .....+.... ..+..+|.||+....... . .... ..+.++++
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l 201 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPY 201 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCC
T ss_pred HHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCC
Confidence 0000 0111111111 456678888876532111 0 1112 36889999
Q ss_pred CHHHHHHHHHHhhC----CCCCChhHHHHHHHHHHHcC---CCcH
Q 041612 220 NEEEAWSLFKKMAG----DYIEDSEFQSIARDVAKECA---GLPV 257 (276)
Q Consensus 220 ~~~ea~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~---G~PL 257 (276)
+.++..+++...+. ....+++ ....+++.++ |.|-
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDAR 243 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHH
Confidence 99999999987753 1222333 3556777777 9994
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=4.6e-06 Score=70.63 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=88.5
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHH---HHHHHHHHHhCCC--cccc--
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIR---KIQEEIGDKLGLK--FHEE-- 175 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~---~l~~~i~~~l~~~--~~~~-- 175 (276)
.+..++.....+.+.++|++|+|||++|+.+++.......-...+.++.+...... ..+.......... ....
T Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 115 (327)
T 1iqp_A 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIF 115 (327)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEE
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEE
Confidence 45555555555569999999999999999999886432100123333333221111 1222222111110 0000
Q ss_pred -cc-----hhh---hhhccccCCCCcEEEEEecccccc-ccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHH
Q 041612 176 -SE-----SGR---ANSLFTHGHKGCKVLLTARSQDVL-SGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIA 245 (276)
Q Consensus 176 -~~-----~~~---~~~l~~~~~~gs~IivTTR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 245 (276)
++ ... +.........++++|+||....-. .........+.+.+++.++...++...+...... --.+..
T Consensus 116 iDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~ 194 (327)
T 1iqp_A 116 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGL 194 (327)
T ss_dssp EETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHH
T ss_pred EeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHH
Confidence 01 111 111222455678889888765321 1111112368899999999999998876422111 113456
Q ss_pred HHHHHHcCCCcHHHHHHHHHH
Q 041612 246 RDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 246 ~~i~~~c~G~PLai~~i~~~L 266 (276)
..|+..++|.|..+..+...+
T Consensus 195 ~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 195 QAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHH
Confidence 788899999998766554443
No 17
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.04 E-value=7.2e-05 Score=60.09 Aligned_cols=152 Identities=11% Similarity=0.160 Sum_probs=82.8
Q ss_pred HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC----cccc---c
Q 041612 104 ILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK----FHEE---S 176 (276)
Q Consensus 104 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~----~~~~---~ 176 (276)
+..+......+.+.|+|++|+|||+||+.+.+..... .....|++.+...+. ...++..+... .++. .
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI---STALLEGLEQFDLICIDDVDAVA 117 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS---CGGGGTTGGGSSEEEEETGGGGT
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH---HHHHHHhccCCCEEEEecccccc
Confidence 3333334456789999999999999999999887654 334566665432211 00111111110 0000 0
Q ss_pred chh-hhhhccc----cCCCCc-EEEEEeccccccccCC--------CCCCceeCCCCCHHHHHHHHHHhhC--CCCCChh
Q 041612 177 ESG-RANSLFT----HGHKGC-KVLLTARSQDVLSGKM--------DSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDSE 240 (276)
Q Consensus 177 ~~~-~~~~l~~----~~~~gs-~IivTTR~~~va~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~ 240 (276)
... ....+.. ....+. ++|+||+...-..... .....+.+++++.++..+++...+. ....+
T Consensus 118 ~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~-- 195 (242)
T 3bos_A 118 GHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP-- 195 (242)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC--
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 000 0111111 112222 5888886542100000 1115789999999999999988764 21222
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHH
Q 041612 241 FQSIARDVAKECAGLPVSIVTIA 263 (276)
Q Consensus 241 ~~~~~~~i~~~c~G~PLai~~i~ 263 (276)
.+....+++.++|.+-.+..+.
T Consensus 196 -~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 196 -EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp -HHHHHHHHHHTTTCHHHHHHHH
T ss_pred -HHHHHHHHHHccCCHHHHHHHH
Confidence 3456788899999887766543
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.03 E-value=3.4e-05 Score=64.98 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=88.8
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-eEEEEEecCcC---CHHHHHHHHHHHhCCC-c-cc--
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-QVVFVEVSQNQ---DIRKIQEEIGDKLGLK-F-HE-- 174 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~---~~~~l~~~i~~~l~~~-~-~~-- 174 (276)
.+...+..+..+.+.++|++|+|||++|+.+.+...... +. ..+.++.+... ........+....... . ..
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 106 (319)
T 2chq_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKII 106 (319)
T ss_dssp HHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEE
T ss_pred HHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEE
Confidence 555555555555599999999999999999998863221 11 22334433322 2233333333222111 0 00
Q ss_pred ----c--cchhh---hhhccccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHH
Q 041612 175 ----E--SESGR---ANSLFTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSI 244 (276)
Q Consensus 175 ----~--~~~~~---~~~l~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 244 (276)
. -.... +..+......++++|+||.... +..........+.+.+++.++...++...+...... -..+.
T Consensus 107 iiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~ 185 (319)
T 2chq_A 107 FLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDG 185 (319)
T ss_dssp EEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC-BCHHH
T ss_pred EEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHH
Confidence 0 01111 1222224456778888876543 211111223478999999999999998776422111 11235
Q ss_pred HHHHHHHcCCCcHHHHHHHHH
Q 041612 245 ARDVAKECAGLPVSIVTIARA 265 (276)
Q Consensus 245 ~~~i~~~c~G~PLai~~i~~~ 265 (276)
...++..++|.|..+..+...
T Consensus 186 l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 186 LEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 677888999998866544433
No 19
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=8.7e-05 Score=64.48 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=78.1
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC-----HHHHHHHHHHHhCCC------
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD-----IRKIQEEIGDKLGLK------ 171 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-----~~~l~~~i~~~l~~~------ 171 (276)
++...+.-..++=+.++|++|+|||.||+.+.+..... .+.++.+.-.+ .+..++.++......
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIF 246 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIF 246 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEe
Confidence 33444444556789999999999999999999987643 23444433221 233444443322110
Q ss_pred ----------cccc--cchh----hhhhccc-----cCCCCcEEEEEecccccccc----CCCCCCceeCCCCCHHHHHH
Q 041612 172 ----------FHEE--SESG----RANSLFT-----HGHKGCKVLLTARSQDVLSG----KMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 172 ----------~~~~--~~~~----~~~~l~~-----~~~~gs~IivTTR~~~va~~----~~~~~~~~~l~~L~~~ea~~ 226 (276)
.... .... ....+.. ....+--||.||-..+.... .-..+..+.++..+.++-.+
T Consensus 247 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~ 326 (405)
T 4b4t_J 247 MDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAE 326 (405)
T ss_dssp EESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHH
T ss_pred eecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHH
Confidence 0000 0000 1111111 23334445666654443221 12345678888889888889
Q ss_pred HHHHhhCCCC--CChhHHHHHHHHHHHcCCCc
Q 041612 227 LFKKMAGDYI--EDSEFQSIARDVAKECAGLP 256 (276)
Q Consensus 227 Lf~~~~~~~~--~~~~~~~~~~~i~~~c~G~P 256 (276)
+|+.+..... .+.+ ...+++.+.|+-
T Consensus 327 Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 327 ILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred HHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 9987775222 2223 345777777754
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.98 E-value=5.7e-05 Score=63.87 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=83.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCc----ccc--cchhhhhhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKF----HEE--SESGRANSLFT 186 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----~~~--~~~~~~~~l~~ 186 (276)
.+.+.|+|++|+|||+||+.+.+..... ..+++.+.......+...+...+.... ++. -.......+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~ 112 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVN-----LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYP 112 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCC-----EEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHH
Confidence 4578999999999999999999876422 234444444344444333322121110 111 11111111111
Q ss_pred ---c------------------CCCCcEEEEEecccc-ccccCCC-CCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHH
Q 041612 187 ---H------------------GHKGCKVLLTARSQD-VLSGKMD-SRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQS 243 (276)
Q Consensus 187 ---~------------------~~~gs~IivTTR~~~-va~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~ 243 (276)
. ..+...+|.||.... +...... ....+.+.+++.++...++...+...... -..+
T Consensus 113 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~ 191 (324)
T 1hqc_A 113 AMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEE 191 (324)
T ss_dssp HHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHH
T ss_pred HHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHH
Confidence 0 112356676665443 2221222 22478999999999999998876421111 1134
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHh
Q 041612 244 IARDVAKECAGLPVSIVTIARALR 267 (276)
Q Consensus 244 ~~~~i~~~c~G~PLai~~i~~~L~ 267 (276)
....++..+.|.|-.+..+...+.
T Consensus 192 ~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 192 AALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Confidence 577899999999988877666553
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.94 E-value=0.00058 Score=55.65 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC-----HHHHHHHHHHHhCCC------ccccc----
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD-----IRKIQEEIGDKLGLK------FHEES---- 176 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-----~~~l~~~i~~~l~~~------~~~~~---- 176 (276)
..+-+.|+|++|+|||++|+.+.+..... .+.++.+...+ ....+..++...... .++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc
Confidence 34668899999999999999999876432 23333332111 122222333222100 00000
Q ss_pred -------------chhhhhhccc-----cCCCCcEEEEEecccccccc-CC---CCCCceeCCCCCHHHHHHHHHHhhCC
Q 041612 177 -------------ESGRANSLFT-----HGHKGCKVLLTARSQDVLSG-KM---DSRPNFSIGVLNEEEAWSLFKKMAGD 234 (276)
Q Consensus 177 -------------~~~~~~~l~~-----~~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 234 (276)
.......+.. ....+..||.||........ .. .....+.++..+.++-.++|...+..
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 113 KRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp --------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred cccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 0001111111 12334556666654432111 11 22356789999999999999887642
Q ss_pred CCCChhHHHHHHHHHHHcCCCcH-HHHHHH
Q 041612 235 YIEDSEFQSIARDVAKECAGLPV-SIVTIA 263 (276)
Q Consensus 235 ~~~~~~~~~~~~~i~~~c~G~PL-ai~~i~ 263 (276)
.............++..+.|++- .+..+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 193 LKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp TTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 22222222234678888988865 454443
No 22
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00018 Score=63.27 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=27.8
Q ss_pred HhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 106 SALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 106 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..+.-..++=|.++|++|+|||.||+.+.+....
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 3334455778999999999999999999998754
No 23
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00026 Score=61.89 Aligned_cols=141 Identities=15% Similarity=0.164 Sum_probs=74.0
Q ss_pred HhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-----CHHHHHHHHHHHhCCC---------
Q 041612 106 SALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-----DIRKIQEEIGDKLGLK--------- 171 (276)
Q Consensus 106 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~l~~~i~~~l~~~--------- 171 (276)
..+.-.-++=|.++|++|+|||.||+.+.+..... | +.++.+.-. ..+..++.++......
T Consensus 209 ~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDE 283 (437)
T 4b4t_I 209 EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDE 283 (437)
T ss_dssp HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEeh
Confidence 33344456789999999999999999999987643 2 333333221 2234444443322110
Q ss_pred -------c--ccccch----hhhhhccc-----cCCCCcEEEEEecccccccc-CCC---CCCceeCCCCCHHHHHHHHH
Q 041612 172 -------F--HEESES----GRANSLFT-----HGHKGCKVLLTARSQDVLSG-KMD---SRPNFSIGVLNEEEAWSLFK 229 (276)
Q Consensus 172 -------~--~~~~~~----~~~~~l~~-----~~~~gs~IivTTR~~~va~~-~~~---~~~~~~l~~L~~~ea~~Lf~ 229 (276)
- ...... .....+.. ....+.-||.||-..+.... ... .+..+.++..+.++-.++|+
T Consensus 284 iDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 284 IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp ESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHH
T ss_pred hhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHH
Confidence 0 000000 01111111 23334456666655444322 222 22357788888888888998
Q ss_pred HhhCCC--CCChhHHHHHHHHHHHcCCC
Q 041612 230 KMAGDY--IEDSEFQSIARDVAKECAGL 255 (276)
Q Consensus 230 ~~~~~~--~~~~~~~~~~~~i~~~c~G~ 255 (276)
.+.... ..+.++ ..+++.+.|+
T Consensus 364 ~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 364 IHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp HHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred HHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 777522 222233 4566777765
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.84 E-value=0.00016 Score=59.91 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=76.0
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-----CHHHHHHHHHHHhCCCc------cccc
Q 041612 108 LEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-----DIRKIQEEIGDKLGLKF------HEES 176 (276)
Q Consensus 108 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~l~~~i~~~l~~~~------~~~~ 176 (276)
+.-...+-+.|+|++|+|||+||+.+++..... .+.++.+.-. ........+........ ++..
T Consensus 46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 120 (285)
T 3h4m_A 46 VGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120 (285)
T ss_dssp HCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHH
Confidence 333445679999999999999999999876432 2233322211 12233333333221110 0000
Q ss_pred -------------ch---hhhhhccc-----cCCCCcEEEEEecccccccc-CC---CCCCceeCCCCCHHHHHHHHHHh
Q 041612 177 -------------ES---GRANSLFT-----HGHKGCKVLLTARSQDVLSG-KM---DSRPNFSIGVLNEEEAWSLFKKM 231 (276)
Q Consensus 177 -------------~~---~~~~~l~~-----~~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~ 231 (276)
.. .....+.. ....+..||.||........ .. .....+.++.++.++..++|...
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 121 AIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp HHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred HhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHH
Confidence 00 01111111 23345667777765433221 11 22336889999999999999888
Q ss_pred hCCCC--CChhHHHHHHHHHHHcCCC-cHHHHHH
Q 041612 232 AGDYI--EDSEFQSIARDVAKECAGL-PVSIVTI 262 (276)
Q Consensus 232 ~~~~~--~~~~~~~~~~~i~~~c~G~-PLai~~i 262 (276)
+.... .... ...++..+.|. |-.+..+
T Consensus 201 ~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 201 TRKMNLAEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp HTTSCBCTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred HhcCCCCCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 75222 2222 34577777764 4344433
No 25
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00022 Score=62.85 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=75.9
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC-----HHHHHHHHHHHhCCC------
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD-----IRKIQEEIGDKLGLK------ 171 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-----~~~l~~~i~~~l~~~------ 171 (276)
++...+.-..++=|.++|++|+|||.||+.+.+..... .+.++.+.-.+ ....++.+.......
T Consensus 205 ~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~Iif 279 (437)
T 4b4t_L 205 EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIF 279 (437)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEE
T ss_pred HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhccccchHHHHHHHHHHHHHHhcCCceee
Confidence 33333444557889999999999999999999987643 23344333221 233334443322100
Q ss_pred ----------c-cc-ccchh----hhhhccc-----cCCCCcEEEEEecccccccc-CCC---CCCceeCCCCCHHHHHH
Q 041612 172 ----------F-HE-ESESG----RANSLFT-----HGHKGCKVLLTARSQDVLSG-KMD---SRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 172 ----------~-~~-~~~~~----~~~~l~~-----~~~~gs~IivTTR~~~va~~-~~~---~~~~~~l~~L~~~ea~~ 226 (276)
- .. ..... ....+.. ....+..||.||-....... ... ....+.++..+.++-.+
T Consensus 280 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~ 359 (437)
T 4b4t_L 280 MDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLE 359 (437)
T ss_dssp EECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHH
T ss_pred eecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHH
Confidence 0 00 00000 0111111 23334567777755544322 222 23467788888888888
Q ss_pred HHHHhhCC--CCCChhHHHHHHHHHHHcCCCc
Q 041612 227 LFKKMAGD--YIEDSEFQSIARDVAKECAGLP 256 (276)
Q Consensus 227 Lf~~~~~~--~~~~~~~~~~~~~i~~~c~G~P 256 (276)
+|+.+... ...+.++ ..+++.+.|+-
T Consensus 360 Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 360 IFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred HHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 88877642 1222233 45667777653
No 26
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00098 Score=56.24 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCC---C-C-eEEEEEecCcCCHHHHHHHHHHHhC
Q 041612 104 ILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKL---F-D-QVVFVEVSQNQDIRKIQEEIGDKLG 169 (276)
Q Consensus 104 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f-~-~~~wv~~~~~~~~~~l~~~i~~~l~ 169 (276)
|...+.....+.+.|+|++|+|||++++.+++....... . . ..++++.....+...++..|++++.
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~ 106 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS 106 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc
Confidence 333444566778999999999999999999998864311 1 1 3455555566677777777877774
No 27
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=7.4e-05 Score=65.89 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=76.3
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-----CHHHHHHHHHHHhCCC------
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-----DIRKIQEEIGDKLGLK------ 171 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~l~~~i~~~l~~~------ 171 (276)
++...+.-..++=|.++|++|+|||.||+.+.+..... .+.++.+.-. ..+..++.++......
T Consensus 233 e~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIf 307 (467)
T 4b4t_H 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIF 307 (467)
T ss_dssp HHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEe
Confidence 33344444567889999999999999999999987643 2334333221 1233444443322110
Q ss_pred ----------cc-cc-cchhh----hhhccc-----cCCCCcEEEEEecccccccc-C---CCCCCceeCCCCCHHHHHH
Q 041612 172 ----------FH-EE-SESGR----ANSLFT-----HGHKGCKVLLTARSQDVLSG-K---MDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 172 ----------~~-~~-~~~~~----~~~l~~-----~~~~gs~IivTTR~~~va~~-~---~~~~~~~~l~~L~~~ea~~ 226 (276)
.. .. ..... ...+.. ....+.-||.||-....... . -.....+.++..+.++-.+
T Consensus 308 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~ 387 (467)
T 4b4t_H 308 FDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRAN 387 (467)
T ss_dssp EECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHH
T ss_pred ecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHH
Confidence 00 00 00000 011111 22233345556644433221 1 1345578888888888889
Q ss_pred HHHHhhCCCC--CChhHHHHHHHHHHHcCCCc
Q 041612 227 LFKKMAGDYI--EDSEFQSIARDVAKECAGLP 256 (276)
Q Consensus 227 Lf~~~~~~~~--~~~~~~~~~~~i~~~c~G~P 256 (276)
+|+.++.... .+-++ ..|++.+.|+-
T Consensus 388 Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 388 IFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp HHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred HHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 9988775222 22233 45777777763
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.75 E-value=0.00011 Score=65.12 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=77.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH--------HHHHhC-CC----cccc---c
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE--------IGDKLG-LK----FHEE---S 176 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~--------i~~~l~-~~----~~~~---~ 176 (276)
...+.|+|++|+||||||+.+.+.......-...++++...- ...+... +...+. .. .++. .
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 678999999999999999999988754310123455543321 1112111 112222 11 0000 0
Q ss_pred ch-hhhhhccc----cCCCCcEEEEEecccccc-----cc---CCCCCCceeCCCCCHHHHHHHHHHhhC--CCCCChhH
Q 041612 177 ES-GRANSLFT----HGHKGCKVLLTARSQDVL-----SG---KMDSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDSEF 241 (276)
Q Consensus 177 ~~-~~~~~l~~----~~~~gs~IivTTR~~~va-----~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~ 241 (276)
.. .....+.. ....|..||+||.+..-. .. .+.....+.+++++.++...++.+.+. ....+++
T Consensus 208 ~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e- 286 (440)
T 2z4s_A 208 GKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE- 286 (440)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-
T ss_pred CChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-
Confidence 00 11111211 235678899998764221 00 012234688999999999999988764 2222222
Q ss_pred HHHHHHHHHHcCCCcHHHH
Q 041612 242 QSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 242 ~~~~~~i~~~c~G~PLai~ 260 (276)
....|+..+.|.+-.+.
T Consensus 287 --~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 287 --VLNFVAENVDDNLRRLR 303 (440)
T ss_dssp --HHHHHHHHCCSCHHHHH
T ss_pred --HHHHHHHhcCCCHHHHH
Confidence 35567778888775444
No 29
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00015 Score=61.86 Aligned_cols=158 Identities=13% Similarity=0.182 Sum_probs=85.3
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-eEEEEEecCcCCHHHHHHHHHH--HhC----------
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-QVVFVEVSQNQDIRKIQEEIGD--KLG---------- 169 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~--~l~---------- 169 (276)
.+...+.....+.+.++|++|+||||+|+.+.+.......+. ....++.+.......+...+.. ...
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLE 127 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcc
Confidence 666666666555599999999999999999988754210011 1233333332233322221111 110
Q ss_pred ---CCcccc---cc-----hhh---hhhccccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhCC
Q 041612 170 ---LKFHEE---SE-----SGR---ANSLFTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGD 234 (276)
Q Consensus 170 ---~~~~~~---~~-----~~~---~~~l~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 234 (276)
...... ++ ... +...........++|++|.... +..........+.+.+++.++....+...+..
T Consensus 128 ~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 128 NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp HSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHH
Confidence 000000 00 011 1111223445677887775442 21111111236889999999999999887642
Q ss_pred --CCCChhHHHHHHHHHHHcCCCcHHHHHHH
Q 041612 235 --YIEDSEFQSIARDVAKECAGLPVSIVTIA 263 (276)
Q Consensus 235 --~~~~~~~~~~~~~i~~~c~G~PLai~~i~ 263 (276)
...+ .+....|++.++|.|-.+..+.
T Consensus 208 ~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 208 ENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp TTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred hCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1122 3457789999999998755443
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.72 E-value=8.7e-05 Score=65.87 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=80.9
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHH---HHHHHHHh--CCC-----
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKI---QEEIGDKL--GLK----- 171 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l---~~~i~~~l--~~~----- 171 (276)
.+...+.....+.+.|+|++|+||||||+.+.+..... | +.++. ......+ +....... +..
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f-----~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfI 112 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V-----ERISAVTSGVKEIREAIERARQNRNAGRRTILFV 112 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E-----EEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e-----EEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEE
Confidence 45555556667789999999999999999999887432 2 22222 2223322 22221111 110
Q ss_pred -cccccchhhhhhccccC-CCCcEEEE-Eecccc--ccccCCCCCCceeCCCCCHHHHHHHHHHhhCCC------CCChh
Q 041612 172 -FHEESESGRANSLFTHG-HKGCKVLL-TARSQD--VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDY------IEDSE 240 (276)
Q Consensus 172 -~~~~~~~~~~~~l~~~~-~~gs~Iiv-TTR~~~--va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~------~~~~~ 240 (276)
..+.-+......+.... .....+|. ||.+.. +..........+.+++++.++...++.+.+... ....-
T Consensus 113 DEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i 192 (447)
T 3pvs_A 113 DEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVL 192 (447)
T ss_dssp ETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEEC
T ss_pred eChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcC
Confidence 00001111111222211 12233333 455543 211122333478899999999999998876420 11111
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHH
Q 041612 241 FQSIARDVAKECAGLPVSIVTIARAL 266 (276)
Q Consensus 241 ~~~~~~~i~~~c~G~PLai~~i~~~L 266 (276)
..+....++..++|.+-.+.-+-..+
T Consensus 193 ~~~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 193 PDETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp CHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 23456778888888877665544433
No 31
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.72 E-value=0.00035 Score=60.12 Aligned_cols=148 Identities=13% Similarity=0.190 Sum_probs=82.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCC-------------------CeEEEEEecCcCCHHHHHHHHHHHhCCCc-
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLF-------------------DQVVFVEVSQNQDIRKIQEEIGDKLGLKF- 172 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~l~~~i~~~l~~~~- 172 (276)
.+.+.|+|++|+|||++|+.+.+.......+ ...+.+......... ..+.+.+.+....
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 116 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE-DTRDLLDNVQYAPA 116 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSS-CHHHHHHHTTSCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHH-HHHHHHHHHhhccc
Confidence 4578999999999999999998876432111 012333322211111 1223333332110
Q ss_pred ---------ccc--cchhhhhhc---cccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhC--CC
Q 041612 173 ---------HEE--SESGRANSL---FTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAG--DY 235 (276)
Q Consensus 173 ---------~~~--~~~~~~~~l---~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~ 235 (276)
++. -+......+ ......+..+|++|.... +..........+.+.+++.++...++...+. ..
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~ 196 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 196 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 000 011111112 224455677777776443 2111122235789999999999999987763 11
Q ss_pred CCChhHHHHHHHHHHHcCCCcHHHHHHHH
Q 041612 236 IEDSEFQSIARDVAKECAGLPVSIVTIAR 264 (276)
Q Consensus 236 ~~~~~~~~~~~~i~~~c~G~PLai~~i~~ 264 (276)
..+ .+....|+..++|.|..+..+..
T Consensus 197 ~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 197 AHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 122 23467899999999998776543
No 32
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=0.00012 Score=62.67 Aligned_cols=78 Identities=8% Similarity=0.105 Sum_probs=49.1
Q ss_pred cCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhC--CCCCChhHHHHHHHHHHHcCCCcHHHHHHH
Q 041612 187 HGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDSEFQSIARDVAKECAGLPVSIVTIA 263 (276)
Q Consensus 187 ~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c~G~PLai~~i~ 263 (276)
....++.+|++|.+.. +..........+++++++.++....+...+. ....+ ..+....|++.++|.+-.+..+.
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445778888887643 2222122235789999999999999988764 11111 02346678889999887665554
Q ss_pred HHH
Q 041612 264 RAL 266 (276)
Q Consensus 264 ~~L 266 (276)
..+
T Consensus 238 ~~~ 240 (354)
T 1sxj_E 238 ESM 240 (354)
T ss_dssp THH
T ss_pred HHH
Confidence 433
No 33
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.67 E-value=0.00087 Score=57.06 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=87.3
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCC--------------------CCCeEEEEEec---CcCCHH
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDK--------------------LFDQVVFVEVS---QNQDIR 158 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~---~~~~~~ 158 (276)
.+...+..+. .+.+.++|++|+|||++|+.+........ |++ ..++... ......
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~ 91 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVD 91 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHH
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHH
Confidence 3444444444 45799999999999999999988764321 233 2344432 233444
Q ss_pred HHHHHHHHHhCCCccc----c---cc-----hhhhhhc---cccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHH
Q 041612 159 KIQEEIGDKLGLKFHE----E---SE-----SGRANSL---FTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEE 222 (276)
Q Consensus 159 ~l~~~i~~~l~~~~~~----~---~~-----~~~~~~l---~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ 222 (276)
.+ +.+.+.+...... . ++ ....+.+ .+....++.+|++|.+.. +..........+++.+++++
T Consensus 92 ~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~ 170 (334)
T 1a5t_A 92 AV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQ 170 (334)
T ss_dssp HH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHH
T ss_pred HH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHH
Confidence 43 4555555432110 0 11 1111122 224445677777776653 33222233457899999999
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHH
Q 041612 223 EAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVT 261 (276)
Q Consensus 223 ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 261 (276)
+..+.+.+.. ..+ .+....++..++|.|..+..
T Consensus 171 ~~~~~L~~~~---~~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 171 YAVTWLSREV---TMS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHHHHHC---CCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhc---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 9999988875 111 23456788899999876543
No 34
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00065 Score=59.68 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=27.6
Q ss_pred HhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 106 SALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 106 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..+.-..++=+.++|++|+|||.||+.+.+....
T Consensus 199 ~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 199 EQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp HHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334455677999999999999999999998754
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.66 E-value=0.0013 Score=55.70 Aligned_cols=146 Identities=17% Similarity=0.175 Sum_probs=74.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-----CHHHHHHHHHHHhCCCc------cccc-----
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-----DIRKIQEEIGDKLGLKF------HEES----- 176 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~l~~~i~~~l~~~~------~~~~----- 176 (276)
.+-+.++|++|+|||+||+.+.+..... ..+.++.+.-. .....++.+........ ++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~ 120 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCC
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccc
Confidence 4679999999999999999999886221 12233332211 12334444433221100 0000
Q ss_pred ----chh----hhhhccc----c--CCCCcEEEEEecccccccc--CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChh
Q 041612 177 ----ESG----RANSLFT----H--GHKGCKVLLTARSQDVLSG--KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSE 240 (276)
Q Consensus 177 ----~~~----~~~~l~~----~--~~~gs~IivTTR~~~va~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 240 (276)
... ....+.. . ...+..||.||........ .......+.++..+.++-.++|..++......-
T Consensus 121 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l- 199 (322)
T 1xwi_A 121 RSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL- 199 (322)
T ss_dssp SSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-
T ss_pred cccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-
Confidence 000 0111111 1 2334445555643322111 012334678888999999999988775322111
Q ss_pred HHHHHHHHHHHcCCC-cHHHHHHH
Q 041612 241 FQSIARDVAKECAGL-PVSIVTIA 263 (276)
Q Consensus 241 ~~~~~~~i~~~c~G~-PLai~~i~ 263 (276)
.......|++.+.|+ +-.+..+.
T Consensus 200 ~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 200 TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 123466788999887 43354443
No 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=0.00087 Score=60.61 Aligned_cols=143 Identities=13% Similarity=0.127 Sum_probs=76.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHh-CC-----------------Cccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKL-GL-----------------KFHE 174 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l-~~-----------------~~~~ 174 (276)
.+.+.|+|++|+|||++|+.+.+... + ..+.++.+...+...+ ...+... .. ....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKTLL-NAGVKNALDNMSVVGYFKHNEEAQNLNGKHF 150 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHHHH-HHTGGGGTTBCCSTTTTTC----CCSSTTSE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHHHH-HHHHHHHhccccHHHHHhhhhhhhhccCCCe
Confidence 47899999999999999999998873 2 2344444444343322 2222211 00 0000
Q ss_pred c---cchhh--------hhhccc-cCCCCcEEEEEecccc--ccccCCCCCCceeCCCCCHHHHHHHHHHhhC--CCCCC
Q 041612 175 E---SESGR--------ANSLFT-HGHKGCKVLLTARSQD--VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAG--DYIED 238 (276)
Q Consensus 175 ~---~~~~~--------~~~l~~-~~~~gs~IivTTR~~~--va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~ 238 (276)
. ++.+. ...+.. ....+..||+++.+.. ...........+.+++++.++..+++...+. ....+
T Consensus 151 vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~ 230 (516)
T 1sxj_A 151 VIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230 (516)
T ss_dssp EEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 0 00000 011111 1123345666654432 1112223344689999999999998887764 22222
Q ss_pred hhHHHHHHHHHHHcCC-CcHHHHHHHH
Q 041612 239 SEFQSIARDVAKECAG-LPVSIVTIAR 264 (276)
Q Consensus 239 ~~~~~~~~~i~~~c~G-~PLai~~i~~ 264 (276)
++ ....|++.++| ++-++..+..
T Consensus 231 ~~---~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 231 PN---VIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp TT---HHHHHHHHTTTCHHHHHHHHTH
T ss_pred HH---HHHHHHHHcCCcHHHHHHHHHH
Confidence 22 36678889988 5555655543
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.00096 Score=56.85 Aligned_cols=153 Identities=14% Similarity=0.185 Sum_probs=80.8
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-eEEEEEecCcCCHHHHHHHHHHHh--CCCc---ccc-
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-QVVFVEVSQNQDIRKIQEEIGDKL--GLKF---HEE- 175 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~~l--~~~~---~~~- 175 (276)
.|...+..+..+.+.++|++|+||||+|+.+.+...... +. ...-++.+.......+...+.... .... ...
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~vi 114 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLI 114 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEE
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEE
Confidence 444445555554589999999999999999998865331 11 223333333333433332221111 1111 000
Q ss_pred --cch-----h---hhhhccccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhhC--CCCCChhHH
Q 041612 176 --SES-----G---RANSLFTHGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDSEFQ 242 (276)
Q Consensus 176 --~~~-----~---~~~~l~~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~ 242 (276)
++. . .+.+........+++|++|.... +..........+.+.+++.++..+.+...+. ....+ .
T Consensus 115 iiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~ 191 (340)
T 1sxj_C 115 ILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---P 191 (340)
T ss_dssp EETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---H
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---H
Confidence 110 0 11112224445667777765432 2111112233678999999999888877663 11122 2
Q ss_pred HHHHHHHHHcCCCcHHH
Q 041612 243 SIARDVAKECAGLPVSI 259 (276)
Q Consensus 243 ~~~~~i~~~c~G~PLai 259 (276)
+....++..++|-+--+
T Consensus 192 ~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 192 NAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 34667888888877644
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.51 E-value=0.0024 Score=54.83 Aligned_cols=148 Identities=9% Similarity=0.055 Sum_probs=76.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC-----HHHHHHHHHHHhCCCccc---ccch-----
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD-----IRKIQEEIGDKLGLKFHE---ESES----- 178 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-----~~~l~~~i~~~l~~~~~~---~~~~----- 178 (276)
..+-+.|+|++|+|||+||+.+.+.... ..+.++.+.-.+ .....+.+.......... .++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc
Confidence 4568999999999999999999887632 233444433221 233333333322110000 0000
Q ss_pred -----------hhhhhccc-------cCCCCcEEEEEeccccccc-c-CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCC
Q 041612 179 -----------GRANSLFT-------HGHKGCKVLLTARSQDVLS-G-KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIED 238 (276)
Q Consensus 179 -----------~~~~~l~~-------~~~~gs~IivTTR~~~va~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 238 (276)
.....+.. ....+..||.||....... . .......+.+...+.++..+++...+......
T Consensus 191 ~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~ 270 (357)
T 3d8b_A 191 QRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC 270 (357)
T ss_dssp C------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC
T ss_pred cCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC
Confidence 00111111 1123445555664432211 1 11223467888899999999888776421111
Q ss_pred hhHHHHHHHHHHHcCC-CcHHHHHHHHH
Q 041612 239 SEFQSIARDVAKECAG-LPVSIVTIARA 265 (276)
Q Consensus 239 ~~~~~~~~~i~~~c~G-~PLai~~i~~~ 265 (276)
-..+....|++.+.| .|-.+..+...
T Consensus 271 -l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 271 -LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp -CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 012346778888888 45556655443
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.50 E-value=0.00073 Score=58.07 Aligned_cols=47 Identities=4% Similarity=-0.043 Sum_probs=32.6
Q ss_pred ceeCCCCCHHHHHHHHHHhhCC--CCCChhHHHHHHHHHHHcC-CCcHHHHHH
Q 041612 213 NFSIGVLNEEEAWSLFKKMAGD--YIEDSEFQSIARDVAKECA-GLPVSIVTI 262 (276)
Q Consensus 213 ~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~-G~PLai~~i 262 (276)
.+.+++++.++...++...+.. ...+ .+....|++.+. |.|-.+..+
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~~~~~~~---~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEEEDVEMS---EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHHHSCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCCCHHHHHHH
Confidence 4789999999999999877642 2222 345677888887 766654433
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.49 E-value=0.002 Score=54.68 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=76.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCC----ccc--ccchhhhhhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK----FHE--ESESGRANSLF 185 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~----~~~--~~~~~~~~~l~ 185 (276)
..+.+.|+|++|+|||+||+.+.+..... | +.++.+.......+ ..++...... .++ .-.......+.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~~-~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll 127 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSAN--I---KTTAAPMIEKSGDL-AAILTNLSEGDILFIDEIHRLSPAIEEVLY 127 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCC--E---EEEEGGGCCSHHHH-HHHHHTCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCC--e---EEecchhccchhHH-HHHHHhccCCCEEEEechhhcCHHHHHHHH
Confidence 45578999999999999999998775432 2 22332222222222 2222222111 000 00111111111
Q ss_pred c---c------------------CCCCcEEEEEeccccccc-c-CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHH
Q 041612 186 T---H------------------GHKGCKVLLTARSQDVLS-G-KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQ 242 (276)
Q Consensus 186 ~---~------------------~~~gs~IivTTR~~~va~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 242 (276)
. . ..++..+|.+|....... . .......+.+++++.++...++...+..... .-..
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~ 206 (338)
T 3pfi_A 128 PAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEE 206 (338)
T ss_dssp HHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECH
T ss_pred HHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCH
Confidence 1 0 111345666665433211 1 1122357999999999999999877642111 1123
Q ss_pred HHHHHHHHHcCCCcHHHHHHHH
Q 041612 243 SIARDVAKECAGLPVSIVTIAR 264 (276)
Q Consensus 243 ~~~~~i~~~c~G~PLai~~i~~ 264 (276)
+....++..+.|.|-.+..+..
T Consensus 207 ~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 207 KAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHH
Confidence 4567788889999855544433
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.48 E-value=0.00059 Score=57.78 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=74.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc-----CCHHHHHHHHHHHhCCCc------cccc-----
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN-----QDIRKIQEEIGDKLGLKF------HEES----- 176 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~l~~~i~~~l~~~~------~~~~----- 176 (276)
.+-+.++|++|+|||+||+.+++..... .+.++.+.- ......+..+........ ++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 125 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhcc
Confidence 4579999999999999999999876432 233332211 122333334433221100 0000
Q ss_pred --------chhhhhhccc------cCCCCcEEEEEecccccccc--CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChh
Q 041612 177 --------ESGRANSLFT------HGHKGCKVLLTARSQDVLSG--KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSE 240 (276)
Q Consensus 177 --------~~~~~~~l~~------~~~~gs~IivTTR~~~va~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 240 (276)
.......+.. ....+..||.||........ .......+.++..+.++-.++|...+......-.
T Consensus 126 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~ 205 (322)
T 3eie_A 126 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT 205 (322)
T ss_dssp ------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC
Confidence 0000111111 13344555556654432211 0122346778889999999999988763221111
Q ss_pred HHHHHHHHHHHcCCC-cHHHHHHH
Q 041612 241 FQSIARDVAKECAGL-PVSIVTIA 263 (276)
Q Consensus 241 ~~~~~~~i~~~c~G~-PLai~~i~ 263 (276)
......|++.+.|+ +-.+..+.
T Consensus 206 -~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 206 -KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp -HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHH
Confidence 22456788888874 43444333
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.45 E-value=0.0025 Score=53.01 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=74.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-----CHHHHHHHHHHHhCCCc------cccc-----
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-----DIRKIQEEIGDKLGLKF------HEES----- 176 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~l~~~i~~~l~~~~------~~~~----- 176 (276)
.+.+.|+|++|+|||++|+.+.+..... .+.++.+... ......+.+........ ++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 4678999999999999999999876422 2333333211 23333444333221100 0000
Q ss_pred --------chhhhhhccc----c----CCCCcEEEEEecccccccc-C-CCCCCceeCCCCCHHHHHHHHHHhhCCCCCC
Q 041612 177 --------ESGRANSLFT----H----GHKGCKVLLTARSQDVLSG-K-MDSRPNFSIGVLNEEEAWSLFKKMAGDYIED 238 (276)
Q Consensus 177 --------~~~~~~~l~~----~----~~~gs~IivTTR~~~va~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 238 (276)
.......+.. . ...+..||.||........ . ......+.+...+.++...++...+......
T Consensus 129 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~ 208 (297)
T 3b9p_A 129 RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP 208 (297)
T ss_dssp C-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC
T ss_pred cccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC
Confidence 0000011111 1 1134456666665432111 0 1123457777888888888887776421111
Q ss_pred hhHHHHHHHHHHHcCCCcH-HHHHHHH
Q 041612 239 SEFQSIARDVAKECAGLPV-SIVTIAR 264 (276)
Q Consensus 239 ~~~~~~~~~i~~~c~G~PL-ai~~i~~ 264 (276)
- ..+....+++.+.|.+- ++..+..
T Consensus 209 ~-~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 209 L-DTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp S-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred C-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 0 12346678889999886 5544443
No 43
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.44 E-value=0.00064 Score=56.91 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=64.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC--eEEEEEecCcC-----CHHHHHHHHHHHhCCCc---cccc-----
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD--QVVFVEVSQNQ-----DIRKIQEEIGDKLGLKF---HEES----- 176 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~-----~~~~l~~~i~~~l~~~~---~~~~----- 176 (276)
....+.|+|++|+|||+||+.+.+......... ..+.++.+.-. ....-...++....... ++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 145 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRP 145 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccC
Confidence 345799999999999999999888775543222 23333322211 12222233333332110 0000
Q ss_pred ------chhhhhhcc---ccCCCCcEEEEEecccccc------ccC-CCCCCceeCCCCCHHHHHHHHHHhhC
Q 041612 177 ------ESGRANSLF---THGHKGCKVLLTARSQDVL------SGK-MDSRPNFSIGVLNEEEAWSLFKKMAG 233 (276)
Q Consensus 177 ------~~~~~~~l~---~~~~~gs~IivTTR~~~va------~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 233 (276)
.......+. .....+..||.||...... ... ......+.+++++.++...++...+.
T Consensus 146 ~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 146 DNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp C---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 111112222 2444566777877543210 000 11225788999999999999988764
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.43 E-value=0.0014 Score=53.94 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=24.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....+.+.|+|++|+|||+||+.+.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44567899999999999999999998753
No 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.32 E-value=0.0011 Score=56.98 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=72.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc-----CCHHHHHHHHHHHh---CCC---cccccc----
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN-----QDIRKIQEEIGDKL---GLK---FHEESE---- 177 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~l~~~i~~~l---~~~---~~~~~~---- 177 (276)
.+-+.|+|++|+|||+||+.+.+..... .+.++.+.- ......++.++... ... .++...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 158 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 158 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccc
Confidence 3568899999999999999999887432 222322211 01223333333322 110 000000
Q ss_pred ---------hhhhhhccc------cCCCCcEEEEEecccccccc--CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChh
Q 041612 178 ---------SGRANSLFT------HGHKGCKVLLTARSQDVLSG--KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSE 240 (276)
Q Consensus 178 ---------~~~~~~l~~------~~~~gs~IivTTR~~~va~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 240 (276)
......+.. ....+..||.||........ .......+.+...+.++-.++|..++......-.
T Consensus 159 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~ 238 (355)
T 2qp9_X 159 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT 238 (355)
T ss_dssp -----CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC
T ss_pred CCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC
Confidence 000111111 12334555556654422111 1123356788899999999999888763221111
Q ss_pred HHHHHHHHHHHcCCC-cHHHHHH
Q 041612 241 FQSIARDVAKECAGL-PVSIVTI 262 (276)
Q Consensus 241 ~~~~~~~i~~~c~G~-PLai~~i 262 (276)
......|++.+.|+ |-.|..+
T Consensus 239 -~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 239 -KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp -HHHHHHHHHHTTTCCHHHHHHH
T ss_pred -HHHHHHHHHHcCCCCHHHHHHH
Confidence 22356788899885 4334433
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.30 E-value=0.0028 Score=52.98 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+.+.|+|++|+|||+||+.+.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456799999999999999999998764
No 47
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.30 E-value=0.0061 Score=52.87 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=73.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC-----CHHHHHHHHHHHhCC---C--c-cccc-----
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ-----DIRKIQEEIGDKLGL---K--F-HEES----- 176 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-----~~~~l~~~i~~~l~~---~--~-~~~~----- 176 (276)
.+-+.|+|++|+|||+||+.+.+..... .+.++.+.-. .....+..++..... . . ++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~-----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~ 222 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNAT-----FFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCE 222 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCE-----EEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCc-----EEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhccc
Confidence 4689999999999999999998775322 2333322211 112223333322211 0 0 0000
Q ss_pred --------chhhhhhccc-------cCCCCcEEEEEeccccccc-cC-CCCCCceeCCCCCHHHHHHHHHHhhCCCCCCh
Q 041612 177 --------ESGRANSLFT-------HGHKGCKVLLTARSQDVLS-GK-MDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDS 239 (276)
Q Consensus 177 --------~~~~~~~l~~-------~~~~gs~IivTTR~~~va~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 239 (276)
.......+.. .......||.||....-.. .. ......+.+...+.++...++...+......
T Consensus 223 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~- 301 (389)
T 3vfd_A 223 RREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP- 301 (389)
T ss_dssp ------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-
T ss_pred CCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-
Confidence 0000011111 1123345555664432211 11 1223467888999999999998887522111
Q ss_pred hHHHHHHHHHHHcCCCcH-HHHHHHH
Q 041612 240 EFQSIARDVAKECAGLPV-SIVTIAR 264 (276)
Q Consensus 240 ~~~~~~~~i~~~c~G~PL-ai~~i~~ 264 (276)
-..+....+++.+.|..- ++..+..
T Consensus 302 l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 302 LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 112346788899988655 5555544
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.28 E-value=0.00034 Score=59.19 Aligned_cols=136 Identities=12% Similarity=0.141 Sum_probs=70.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHH--------HHHhCCC----ccccc--ch
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEI--------GDKLGLK----FHEES--ES 178 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i--------~~~l~~~----~~~~~--~~ 178 (276)
...+.|+|++|+||||||+.+.+..... -...++++.... ...+...+ ....... .++.. ..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 4679999999999999999999887543 123445543321 11111111 1111100 00100 00
Q ss_pred --hhhhhccc----cCCCCcEEEEEecccccc-----cc---CCCCCCceeCCCCCHHHHHHHHHHhhC--CCCCChhHH
Q 041612 179 --GRANSLFT----HGHKGCKVLLTARSQDVL-----SG---KMDSRPNFSIGVLNEEEAWSLFKKMAG--DYIEDSEFQ 242 (276)
Q Consensus 179 --~~~~~l~~----~~~~gs~IivTTR~~~va-----~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~ 242 (276)
.....+.. ....+..||+||.+..-. .. .......+.+++ +.++...++...+. ....+ .
T Consensus 113 ~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~ 188 (324)
T 1l8q_A 113 KERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---K 188 (324)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---H
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---H
Confidence 01111111 233466788888654221 00 011224588999 99999999988764 22222 2
Q ss_pred HHHHHHHHHcCCCcH
Q 041612 243 SIARDVAKECAGLPV 257 (276)
Q Consensus 243 ~~~~~i~~~c~G~PL 257 (276)
+....|+..+ |.+-
T Consensus 189 ~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 189 EVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHHHC-SSHH
T ss_pred HHHHHHHHhC-CCHH
Confidence 3455667777 5543
No 49
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.25 E-value=0.0032 Score=55.74 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=39.0
Q ss_pred CCCcEEEEEecccccccc--CCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCc
Q 041612 189 HKGCKVLLTARSQDVLSG--KMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLP 256 (276)
Q Consensus 189 ~~gs~IivTTR~~~va~~--~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~P 256 (276)
..+..||.||........ .......+.+...+.++-..+|..++....... .......|++.+.|+.
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYS 337 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCC
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCC
Confidence 345566666654432211 112334677888888888899988875322110 1233567888898853
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.00029 Score=54.13 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.2
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+...+.....+.+.|+|++|+|||+||+.+++....
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5666666666678899999999999999999988643
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.24 E-value=0.011 Score=52.57 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++-+.|+|++|+|||+||+.+.+...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999998764
No 52
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.0077 Score=48.91 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+-+.|+|++|+||||||+.+.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999998764
No 53
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.17 E-value=0.0023 Score=60.50 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=73.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC----cC-CHHHHHHHHHHHhCCCccc-----------
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ----NQ-DIRKIQEEIGDKLGLKFHE----------- 174 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----~~-~~~~l~~~i~~~l~~~~~~----------- 174 (276)
..++-|.++|++|+|||+||+.+.+..... .+.++.+. .. ..+..++.+++......+.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~ 310 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence 346789999999999999999999876532 24444322 11 2344455555443221100
Q ss_pred ----cc----chhhhhhccc-----cCCCCcEEEEEecccccccc-CC---CCCCceeCCCCCHHHHHHHHHHhhCCC--
Q 041612 175 ----ES----ESGRANSLFT-----HGHKGCKVLLTARSQDVLSG-KM---DSRPNFSIGVLNEEEAWSLFKKMAGDY-- 235 (276)
Q Consensus 175 ----~~----~~~~~~~l~~-----~~~~gs~IivTTR~~~va~~-~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~-- 235 (276)
.. .......+.. ....+--||.||...+.... .. ...+.+.+...+.++-.++|+.+....
T Consensus 311 ~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~ 390 (806)
T 3cf2_A 311 PKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL 390 (806)
T ss_dssp CTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE
T ss_pred cccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 00 0001111111 12223334445544332222 12 233468888888888888998776522
Q ss_pred CCChhHHHHHHHHHHHcCCCcH
Q 041612 236 IEDSEFQSIARDVAKECAGLPV 257 (276)
Q Consensus 236 ~~~~~~~~~~~~i~~~c~G~PL 257 (276)
..+.+ ...++.++.|+--
T Consensus 391 ~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 391 ADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp CTTCC----HHHHHHHCCSCCH
T ss_pred CcccC----HHHHHHhcCCCCH
Confidence 12223 3457788887753
No 54
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.11 E-value=0.00038 Score=53.34 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=29.8
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+...+.....+.+.|+|++|+|||+||+.+.+....
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5555666666677899999999999999999988643
No 55
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.0035 Score=52.60 Aligned_cols=126 Identities=20% Similarity=0.160 Sum_probs=73.2
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcc-c-CCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCCcc----cc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVK-S-DKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLKFH----EE 175 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~-~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~----~~ 175 (276)
.|...+..+..+...++|++|+|||++|+.+.+... . ..+.+. .+++.++ ......+ +.+.+.+..... ..
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p~~~~~kv 85 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSPELYTRKY 85 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCCSSSSSEE
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhccccCCceE
Confidence 344445555577899999999999999999987531 1 123343 4455443 3444443 345554432211 00
Q ss_pred ---c-----chhhhhhcc---ccCCCCcEEEEEecccc-ccccCCCCCCceeCCCCCHHHHHHHHHHhh
Q 041612 176 ---S-----ESGRANSLF---THGHKGCKVLLTARSQD-VLSGKMDSRPNFSIGVLNEEEAWSLFKKMA 232 (276)
Q Consensus 176 ---~-----~~~~~~~l~---~~~~~gs~IivTTR~~~-va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 232 (276)
+ .....+.+. +..++.+.+|++|.+.. +... .... .+++.++++++..+.+.+..
T Consensus 86 viIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~t-I~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 86 VIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPT-IKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHH-HHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred EEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHH-HHce-eEeCCCCCHHHHHHHHHHHh
Confidence 1 111122222 25556778888775543 3322 1222 89999999999999887775
No 56
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.00033 Score=53.88 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+.|+|++|+|||||++.+++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999875
No 57
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.02 E-value=0.00053 Score=53.70 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
+.+.|+|++|+|||+||+.+++....+ ...++|++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEh
Confidence 689999999999999999999988654 334556654
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.95 E-value=0.014 Score=52.31 Aligned_cols=151 Identities=14% Similarity=0.188 Sum_probs=75.7
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc----CC-HHHHHHHHHHHhCCCc-----
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN----QD-IRKIQEEIGDKLGLKF----- 172 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~----~~-~~~l~~~i~~~l~~~~----- 172 (276)
++...+.....+-+.|+|++|+|||++|+.+.+.... ..+.++.+.- .. ....+..++.......
T Consensus 228 ~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLf 302 (489)
T 3hu3_A 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIF 302 (489)
T ss_dssp HHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEE
Confidence 3334444445567999999999999999999887632 2233332211 11 1222222222211100
Q ss_pred -ccc-----------c--chhhhhhccc-----cCCCCcEEEEEecccc-ccccCC---CCCCceeCCCCCHHHHHHHHH
Q 041612 173 -HEE-----------S--ESGRANSLFT-----HGHKGCKVLLTARSQD-VLSGKM---DSRPNFSIGVLNEEEAWSLFK 229 (276)
Q Consensus 173 -~~~-----------~--~~~~~~~l~~-----~~~~gs~IivTTR~~~-va~~~~---~~~~~~~l~~L~~~ea~~Lf~ 229 (276)
++. . .......+.. .......||.||.... +-.... .....+.+...+.++-.++|.
T Consensus 303 LDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~ 382 (489)
T 3hu3_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382 (489)
T ss_dssp EESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred ecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHH
Confidence 000 0 0011111211 2233445555665442 211111 223368899999999999999
Q ss_pred HhhCCCC--CChhHHHHHHHHHHHcCCC-cHHHHHH
Q 041612 230 KMAGDYI--EDSEFQSIARDVAKECAGL-PVSIVTI 262 (276)
Q Consensus 230 ~~~~~~~--~~~~~~~~~~~i~~~c~G~-PLai~~i 262 (276)
.++.... .+.. ...++..+.|+ +-.+..+
T Consensus 383 ~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 383 IHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 8875222 2222 34577777775 4444444
No 59
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.92 E-value=0.00054 Score=51.97 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEI 133 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v 133 (276)
++|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 60
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00057 Score=51.85 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.|.|++|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987754
No 61
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.89 E-value=0.019 Score=48.54 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=38.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC-cCCHHHHHHHHHHHhCCC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ-NQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~ 171 (276)
....+++|+|++|+||||+++.+........ ..+.+....- .....+-+......++.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCce
Confidence 3467999999999999999999998876642 2344443321 123344445556666643
No 62
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.89 E-value=0.00064 Score=51.98 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.|.|++|+||||+++.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988764
No 63
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.78 E-value=0.00084 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 64
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.76 E-value=0.015 Score=51.08 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+|.++|.+|+||||++..+......+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999998877654
No 65
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.76 E-value=0.00082 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+|+|+|++|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987754
No 66
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.75 E-value=0.00096 Score=52.21 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|.|+|++|+||||+++.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987763
No 67
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.75 E-value=0.00081 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.++|.|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 68
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.74 E-value=0.00099 Score=52.18 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....+++|+|++|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345689999999999999999998765
No 69
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.72 E-value=0.001 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999987653
No 70
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.71 E-value=0.001 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.|.|+|++|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987764
No 71
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.71 E-value=0.00099 Score=51.54 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 72
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.71 E-value=0.00099 Score=51.47 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
++|.|.|++|+||||+++.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987764
No 73
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.69 E-value=0.0015 Score=51.57 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
+...+++|+|++|+|||||++.+......
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34569999999999999999999887764
No 74
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.68 E-value=0.0011 Score=51.83 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....+|+|+|++|+|||||++.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4457999999999999999999988775
No 75
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.018 Score=50.68 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+.+|.++|.+|+||||++..+......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 37899999999999999999998877654
No 76
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.63 E-value=0.0013 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++|+|++|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
No 77
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.62 E-value=0.0013 Score=50.82 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+|.|.|++|+||||+++.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999887653
No 78
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.62 E-value=0.0014 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998766
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.0016 Score=54.41 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++.+.++|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4668889999999999999999998843
No 80
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.59 E-value=0.0013 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.|+|.|++|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988764
No 81
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.58 E-value=0.0013 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999997764
No 82
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.57 E-value=0.036 Score=48.74 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+++|.++|.+|+||||++..+......+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999998877654
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.57 E-value=0.011 Score=50.60 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+++|+|+.|+||||+++.+.......
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 35699999999999999999999887654
No 84
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.56 E-value=0.0018 Score=50.62 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....+|+|.|++|+||||+++.+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
No 85
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.55 E-value=0.0014 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+++|+|++|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 86
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.55 E-value=0.0014 Score=50.19 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.|.|.|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987653
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.54 E-value=0.0015 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.++|.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998876
No 88
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.53 E-value=0.011 Score=49.66 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=75.4
Q ss_pred HHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHH---HHHhCCC-c-----
Q 041612 103 NILSALEDPD-VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEI---GDKLGLK-F----- 172 (276)
Q Consensus 103 ~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i---~~~l~~~-~----- 172 (276)
.+..++.... .+.+.+.|++|+|||++|+.+.+.... ..+.++.+. .....+...+ ....... .
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~~~~~vli 110 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSD-CKIDFVRGPLTNFASAASFDGRQKVIV 110 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTT-CCHHHHHTHHHHHHHBCCCSSCEEEEE
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccc-cCHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 5555555544 456777888999999999999887732 234444433 2333332222 2211100 0
Q ss_pred -cccc--c-hhhhhhcc---ccCCCCcEEEEEecccccc-ccCCCCCCceeCCCCCHHHHHHHH-------HHhhC--CC
Q 041612 173 -HEES--E-SGRANSLF---THGHKGCKVLLTARSQDVL-SGKMDSRPNFSIGVLNEEEAWSLF-------KKMAG--DY 235 (276)
Q Consensus 173 -~~~~--~-~~~~~~l~---~~~~~gs~IivTTR~~~va-~~~~~~~~~~~l~~L~~~ea~~Lf-------~~~~~--~~ 235 (276)
++.. . ......+. .....+.++|+||....-. .........+.+++++.++-.+++ ...+. ..
T Consensus 111 iDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~ 190 (324)
T 3u61_B 111 IDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI 190 (324)
T ss_dssp EESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0100 1 11111111 1334567888887654321 111111236889999988854332 22222 11
Q ss_pred CCChhHHHHHHHHHHHcCCCcHHHH
Q 041612 236 IEDSEFQSIARDVAKECAGLPVSIV 260 (276)
Q Consensus 236 ~~~~~~~~~~~~i~~~c~G~PLai~ 260 (276)
..++ .+....+++.++|-+-.+.
T Consensus 191 ~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 191 AIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred CCCc--HHHHHHHHHhCCCCHHHHH
Confidence 1111 2456778888888765433
No 89
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.52 E-value=0.0018 Score=51.13 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+++|+|++|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999988764
No 90
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.52 E-value=0.0014 Score=50.02 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987754
No 91
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0016 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988765
No 92
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.50 E-value=0.0017 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+++|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 93
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.49 E-value=0.0018 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|.|.|++|+||||+++.+.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 94
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.49 E-value=0.0022 Score=49.42 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
....|.|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
No 95
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.47 E-value=0.0017 Score=53.03 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.|.|++|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987653
No 96
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987753
No 97
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.45 E-value=0.0016 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999987654
No 98
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.45 E-value=0.0022 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+++|+|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998766
No 99
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.44 E-value=0.0019 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+|+|+|++|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987754
No 100
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.44 E-value=0.0018 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 101
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.44 E-value=0.0014 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~ 134 (276)
-.+++|+|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999643
No 102
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.44 E-value=0.0019 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
.+|+|.|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 103
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.43 E-value=0.002 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|+|+|++|+|||||++.+.....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999996553
No 104
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0081 Score=48.08 Aligned_cols=57 Identities=12% Similarity=0.248 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCeEEEEEecCcCCHHHHHHHHHHHhCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDK----LFDQVVFVEVSQNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 170 (276)
-.++.|+|++|+|||||++.+........ .-..++|++.....+...+. .++..++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~ 84 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGL 84 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCC
Confidence 45899999999999999999988532210 12578888776654544432 33444443
No 105
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.43 E-value=0.0018 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
|.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987754
No 106
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.42 E-value=0.0024 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|.|.|++|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987663
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.42 E-value=0.002 Score=50.65 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+++|.|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988754
No 108
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.42 E-value=0.0022 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
+...+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999875
No 109
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.41 E-value=0.0022 Score=50.36 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+|.|.|++|+||||+++.+.......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999877543
No 110
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0017 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.++|+|++|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 111
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.41 E-value=0.0015 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 112
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.39 E-value=0.0038 Score=46.10 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-|.|+|.+|+|||++|+.+++....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 35789999999999999999887543
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.39 E-value=0.0016 Score=48.65 Aligned_cols=48 Identities=13% Similarity=0.301 Sum_probs=32.5
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
.++..|..-.-..+.|+|.+|+|||||++.+++.....+ + ..++++..
T Consensus 26 ~~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~ 73 (149)
T 2kjq_A 26 ELVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAA 73 (149)
T ss_dssp HHHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETT
T ss_pred HHHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHH
Confidence 333444332456899999999999999999998876431 1 24555543
No 114
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.39 E-value=0.0021 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|.+.|++|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 115
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.39 E-value=0.0022 Score=48.55 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|+|.|++|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999988754
No 116
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.38 E-value=0.0022 Score=52.44 Aligned_cols=26 Identities=19% Similarity=0.565 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988743
No 117
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.38 E-value=0.002 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.38 E-value=0.0046 Score=48.75 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=33.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQ 161 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 161 (276)
-.++.|+|.+|+|||||+..+.. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH
Confidence 45899999999999999999988 21 2467888776655555443
No 119
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.38 E-value=0.0026 Score=49.00 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+|.+.|++|+||||+++.+.......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45689999999999999999999887643
No 120
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.37 E-value=0.0023 Score=50.90 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.++|.|.|++|+||+|.|+.+...+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999998764
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.36 E-value=0.0077 Score=47.74 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=31.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC---C-CCCeEEEEEecCcCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD---K-LFDQVVFVEVSQNQD 156 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~ 156 (276)
-.+++|+|++|+|||||++.+....... . .-...+|++......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 3589999999999999999998754331 0 124577776544333
No 122
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.36 E-value=0.0077 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.|+|++|+|||||++.+.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998764
No 123
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.36 E-value=0.0023 Score=49.38 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++|+|.|++|+||||+++.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 124
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.36 E-value=0.0034 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....+|.|.|++|+||||+++.+....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998765
No 125
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.36 E-value=0.0023 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|+|.|++|+||||+++.+.....
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 126
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.36 E-value=0.0023 Score=48.27 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988654
No 127
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.33 E-value=0.043 Score=51.86 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=69.7
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCeEEE-EEec-------CcCCHHHHHHHHHHHhCC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKL----FDQVVF-VEVS-------QNQDIRKIQEEIGDKLGL 170 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~-------~~~~~~~l~~~i~~~l~~ 170 (276)
.++..|......-+.++|.+|+|||++|+.+.+....... +...+| ++.+ .....+..++.+++.+..
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh
Confidence 6666666666677899999999999999999987643211 133333 2211 112345556666665543
Q ss_pred Ccccc---c--------------chhhhhhccc-cCCCCcEEEEEeccccccc------cCCCCCCceeCCCCCHHHHHH
Q 041612 171 KFHEE---S--------------ESGRANSLFT-HGHKGCKVLLTARSQDVLS------GKMDSRPNFSIGVLNEEEAWS 226 (276)
Q Consensus 171 ~~~~~---~--------------~~~~~~~l~~-~~~~gs~IivTTR~~~va~------~~~~~~~~~~l~~L~~~ea~~ 226 (276)
..... + .......+.. .......+|.+|....... ........+.++.++.++..+
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~ 356 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQ 356 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHH
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHH
Confidence 21100 0 1111111222 1223455666655432110 011112258899999999988
Q ss_pred HHHHhh
Q 041612 227 LFKKMA 232 (276)
Q Consensus 227 Lf~~~~ 232 (276)
++....
T Consensus 357 il~~l~ 362 (758)
T 1r6b_X 357 IINGLK 362 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 128
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.32 E-value=0.016 Score=55.65 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=29.6
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++..|.....+.+.++|.+|+|||+||+.+.+....
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5566665555667899999999999999999988743
No 129
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0027 Score=49.70 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 130
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.30 E-value=0.0029 Score=48.23 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..+++.|.|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999887644
No 131
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.29 E-value=0.0026 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|.|++|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 132
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.28 E-value=0.0029 Score=50.23 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.....|.|+|.+|+|||||+..+.....
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999987754
No 133
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.28 E-value=0.0075 Score=51.63 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=33.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 157 (276)
-.++.|+|++|+|||||+..+....... =..++|++....++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccch
Confidence 4699999999999999999998876543 234677776655554
No 134
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.28 E-value=0.003 Score=49.68 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+|+|.|++|+||||+++.+.......
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999876543
No 135
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.27 E-value=0.0029 Score=50.18 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...|.|.|++|+||||+++.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987653
No 136
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.27 E-value=0.0028 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+|+|+|++|+||||+++.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998754
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.27 E-value=0.0023 Score=54.46 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=34.5
Q ss_pred ceeCCCCCHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHcCCCcHHHHHH
Q 041612 213 NFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSIARDVAKECAGLPVSIVTI 262 (276)
Q Consensus 213 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~i 262 (276)
...+++.+.++-.+++.+.+...... -..+.+..|+.+++|.|-.+.-+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHH
Confidence 57899999999999998876311111 11345788999999999755443
No 138
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.26 E-value=0.0027 Score=50.44 Aligned_cols=27 Identities=30% Similarity=0.208 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....|.|.|++|+||||+++.+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999988764
No 139
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.26 E-value=0.0029 Score=49.65 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..+|+|.|++|+||||+++.+......
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887654
No 140
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.25 E-value=0.0028 Score=50.06 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.25 E-value=0.0098 Score=49.03 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.++|++|+|||||++.+.....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999999998764
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.24 E-value=0.0028 Score=49.83 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.+++|+|++|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998776
No 143
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.23 E-value=0.0015 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|+|.|++|+||||+++.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999987764
No 144
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.23 E-value=0.0033 Score=52.36 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
....+|+|.|.+|+|||||++.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999998877654
No 145
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.22 E-value=0.0026 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 146
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.21 E-value=0.0031 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 147
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.18 E-value=0.0028 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.+++|+|++|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998765
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.17 E-value=0.011 Score=48.71 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 041612 116 LGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 116 i~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.|+|++|+|||||++.+.....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998774
No 149
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.16 E-value=0.0033 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.|+|.|+.|+||||+++.+......
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987744
No 150
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.16 E-value=0.0036 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|.|++|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 151
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.14 E-value=0.0036 Score=48.98 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
....+++|.|.+|+||||+++.+......
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999887644
No 152
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.13 E-value=0.0037 Score=52.64 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
....+++|.|.+|+|||||++.+......
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34569999999999999999999887754
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.12 E-value=0.0038 Score=50.51 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+.+|.|.|++|+||||+|+.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 154
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.12 E-value=0.0039 Score=50.69 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+.+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999987654
No 155
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.11 E-value=0.0039 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999988754
No 156
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.10 E-value=0.0035 Score=52.84 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
++.++|+|.|-||+||||.+-.+.-.....
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 568999999999999999998887776654
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.10 E-value=0.012 Score=48.97 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=35.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-eEEEEEecCcCCHHHHHHHHHHH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD-QVVFVEVSQNQDIRKIQEEIGDK 167 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~~ 167 (276)
.-.+++|.|.+|+|||||++.+....... .. .+.|++... +...+...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 34589999999999999999999887654 23 466665432 444554444433
No 158
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.09 E-value=0.0064 Score=50.94 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+++|+|++|+|||||++.+.......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999887754
No 159
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.09 E-value=0.0039 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+++|+|+.|.|||||.+.+....
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999999998876
No 160
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.09 E-value=0.0039 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|++|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988765
No 161
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.08 E-value=0.0031 Score=48.21 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+++|+|.+|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999998877654
No 162
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0033 Score=49.72 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..++|+|+|.+|+|||||+..+.....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999988754
No 163
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.06 E-value=0.0039 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+|+|.|+.|+||||+++.+....
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998554
No 164
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.06 E-value=0.014 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...+++++|.+|+||||++..+......
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999888764
No 165
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.04 E-value=0.0041 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.|.|+||+||+|.|+.+...+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3688999999999999999998764
No 166
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.03 E-value=0.12 Score=45.16 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...++.++|.+|+||||++..+......+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999888654
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.03 E-value=0.016 Score=48.81 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=37.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDK 167 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 167 (276)
-.++.|.|.+|+|||||+..+..+...++ ..++|++.- .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 45899999999999999999987765543 567777764 4566666555543
No 168
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.99 E-value=0.0033 Score=51.14 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999987754
No 169
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.97 E-value=0.0041 Score=49.31 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...|.|.|++|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987763
No 170
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.96 E-value=0.0045 Score=48.77 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....+|.|.|++|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999988765
No 171
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.96 E-value=0.0052 Score=51.85 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+.+|+|.|.+|+|||||++.+.....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466999999999999999999887765
No 172
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.96 E-value=0.0039 Score=48.44 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+++|+|+.|+|||||.+.+.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988764
No 173
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.95 E-value=0.0054 Score=49.41 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 458999999999999999999877654
No 174
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.93 E-value=0.0048 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998766
No 175
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.92 E-value=0.013 Score=49.24 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....+|+|.|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456999999999999999999988764
No 176
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.90 E-value=0.057 Score=44.98 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEV 151 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 151 (276)
..+++++|.+|+||||++..+......++ ..+.+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEec
Confidence 56999999999999999999988876542 23445544
No 177
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.90 E-value=0.0053 Score=47.80 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999988763
No 178
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.90 E-value=0.0051 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 179
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.89 E-value=0.024 Score=49.30 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=38.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC----CCCCeEEEEEecCcCCHHHHHHHHHHHhCCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD----KLFDQVVFVEVSQNQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 171 (276)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+ ..+++.++..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~ 239 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLD 239 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCC
Confidence 4699999999999999999876443221 01346888887666555544 3355666543
No 180
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.89 E-value=0.0063 Score=48.27 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=31.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE 163 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 163 (276)
-.+++|+|.+|+|||||++.+....... -..+.|++... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 3589999999999999999998766533 13456665433 34444333
No 181
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.89 E-value=0.0058 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 182
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.89 E-value=0.0046 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
-.+++|+|++|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999999884
No 183
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.88 E-value=0.0081 Score=48.52 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||.+.+..-...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999999999999877653
No 184
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.88 E-value=0.006 Score=48.89 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....|.|.|++|+||||+|+.+.....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988764
No 185
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.87 E-value=0.0054 Score=46.89 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999887643
No 186
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0057 Score=51.23 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+++|+|+.|+||||+++.+.......
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35699999999999999999999887654
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.85 E-value=0.0097 Score=49.93 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc-cCCCCCeEEEEEe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK-SDKLFDQVVFVEV 151 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 151 (276)
...+.|+|++|+|||+||..+++... .++ ..+.+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEH
Confidence 46889999999999999999999876 442 23445543
No 188
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.85 E-value=0.006 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~ 134 (276)
.+.+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999988
No 189
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.83 E-value=0.017 Score=48.45 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=38.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHHhCCCcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDKLGLKFH 173 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~ 173 (276)
++.|+|.+|+|||||+.++......+..=..++|++.....+.. -+++++.+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPE 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHH
Confidence 78999999999999999987776532112467888877776654 2567776543
No 190
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.82 E-value=0.007 Score=47.51 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+..++.. +..+.+.++|++|+|||++|..+.+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444443 2234799999999999999999888764
No 191
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.81 E-value=0.0061 Score=48.99 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+|+|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 192
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.79 E-value=0.011 Score=50.56 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=33.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 157 (276)
.-.++.|+|.+|+|||||+..+....... =..++|++.....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCH
Confidence 35689999999999999999998776543 245778877655543
No 193
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.78 E-value=0.006 Score=53.74 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+++|.|+|.+|+||||++..+.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999887764
No 194
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.78 E-value=0.0036 Score=50.11 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=16.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-Hhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIA-RKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 137 (276)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 554
No 195
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.78 E-value=0.011 Score=45.24 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++++|+|..|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887654
No 196
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0053 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..|+|+|++|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987654
No 197
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.77 E-value=0.0063 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987654
No 198
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.75 E-value=0.012 Score=49.27 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...++.|+|.+|+||||++..+.......
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 45799999999999999999999887654
No 199
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.01 Score=47.61 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEE 163 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 163 (276)
-.++.|.|.+|+|||||+..+....... =..++|++... +...+.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH
Confidence 3589999999999999998887665433 24577776543 34444433
No 200
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.74 E-value=0.024 Score=48.23 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=41.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCeEEEEEecCcCCHHHHHHHHHHHhCCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDK----LFDQVVFVEVSQNQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 171 (276)
.-.++.|+|.+|+|||+|+..+........ .-..++|++....++...+. .++..++.+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~ 183 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVD 183 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 346899999999999999999988743211 12468899888776766654 344555543
No 201
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.73 E-value=0.0072 Score=49.50 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999876653
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.73 E-value=0.053 Score=48.60 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+++|+|+|.+|+||||++..+......+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999998776543
No 203
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.72 E-value=0.0099 Score=50.71 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=24.6
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 109 EDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 109 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..+....|.|+|++|+||||+++.+.....
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344566799999999999999998887654
No 204
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.72 E-value=0.1 Score=43.28 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
...+++++|.+|+||||++..+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45699999999999999999999887654
No 205
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.69 E-value=0.0066 Score=53.26 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999988755
No 206
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.69 E-value=0.0053 Score=48.45 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.+++|+|+.|+|||||.+.+...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999876
No 207
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.67 E-value=0.006 Score=48.72 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999876653
No 208
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.67 E-value=0.0079 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 358999999999999999999876643
No 209
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.65 E-value=0.013 Score=50.12 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=34.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 157 (276)
.-+++.|.|.+|+||||||..+....... -..++|++.....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 105 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccH
Confidence 35689999999999999999988776544 236788887666553
No 210
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.65 E-value=0.0083 Score=48.42 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999877653
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.65 E-value=0.0064 Score=49.68 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+-+.|+|++|+|||+||+.+++....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344789999999999999999987643
No 212
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.64 E-value=0.02 Score=48.96 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CeEEEEEecCcCCHHHHHHHHHHHhC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLF----DQVVFVEVSQNQDIRKIQEEIGDKLG 169 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~l~~~i~~~l~ 169 (276)
.-.++.|+|.+|+|||||+..+.......... ..++|++....+....+ ..+.+..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 45699999999999999999998876321001 24478876555433333 23444433
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.64 E-value=0.0079 Score=53.59 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.9
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++..+......-+.++|++|+|||++|+.+.+...
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 556666555556778999999999999999998864
No 214
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.63 E-value=0.0084 Score=48.94 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999877653
No 215
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.63 E-value=0.0085 Score=48.60 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999877654
No 216
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.63 E-value=0.0084 Score=49.14 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-.+++|+|+.|+|||||.+.+..-...
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 3458999999999999999999877653
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.63 E-value=0.028 Score=47.44 Aligned_cols=58 Identities=24% Similarity=0.422 Sum_probs=41.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCeEEEEEecCcCCHHHHHHHHHHHhCCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDK----LFDQVVFVEVSQNQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 171 (276)
-.++.|+|.+|+|||+|+..+........ .-..++|++....++...+. .++..++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~ 168 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLD 168 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCC
Confidence 46899999999999999999987643221 02468898888776666654 344555543
No 218
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.61 E-value=0.0075 Score=51.20 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+|+|.|+.|+||||||..+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999988754
No 219
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.61 E-value=0.0087 Score=49.11 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 358999999999999999999876654
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.59 E-value=0.013 Score=48.79 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
..+.++|++|+|||++|+.+.+..... -...+.++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecc
Confidence 479999999999999999999887543 1233444444
No 221
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.58 E-value=0.014 Score=46.80 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
....|.|.|++|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999988865
No 222
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.57 E-value=0.0077 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 223
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.57 E-value=0.0091 Score=49.16 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999877653
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.56 E-value=0.0024 Score=47.08 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.-|.|+|.+|+|||++|+.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3478999999999999999876543
No 225
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.55 E-value=0.0077 Score=48.97 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
-.+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999985
No 226
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.54 E-value=0.0095 Score=48.62 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999877643
No 227
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.54 E-value=0.0073 Score=48.68 Aligned_cols=27 Identities=19% Similarity=0.355 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999877654
No 228
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.54 E-value=0.0083 Score=46.34 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...++|+|.+|+|||||.+.+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999987654
No 229
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.51 E-value=0.0085 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++|.|+|+.|+||||||..+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4899999999999999999987753
No 230
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.51 E-value=0.0069 Score=48.55 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 358999999999999999999887654
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.51 E-value=0.0089 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.+++.|+|++|+|||+||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999876
No 232
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.50 E-value=0.0091 Score=44.21 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.|.++|.+|+|||||...+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998764
No 233
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.50 E-value=0.0061 Score=48.32 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||.+.+..-...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999877653
No 234
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.50 E-value=0.028 Score=47.31 Aligned_cols=59 Identities=14% Similarity=0.296 Sum_probs=40.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc-----------C-CCC--CeEEEEEecCcCCHHHHHHHHHHHhCCC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS-----------D-KLF--DQVVFVEVSQNQDIRKIQEEIGDKLGLK 171 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----------~-~~f--~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 171 (276)
.-.++.|+|.+|+|||+||..+...... . +.. ..++|++....++...+.+ ++..++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 3468999999999999999998876321 1 101 4688888887777766653 34555543
No 235
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.49 E-value=0.013 Score=47.73 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-+.|+|.+|+|||++|+.+.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 46789999999999999999987643
No 236
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.47 E-value=0.0082 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
-.+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999985
No 237
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.47 E-value=0.011 Score=48.38 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 346899999999999999999877654
No 238
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.47 E-value=0.01 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999877653
No 239
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.46 E-value=0.008 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..-+.++|++|+|||++|+.+.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998773
No 240
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.44 E-value=0.016 Score=49.70 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....+|+|+|.+|+|||||+..+.....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999999887654
No 241
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.43 E-value=0.0093 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++|+|..|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999988654
No 242
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.43 E-value=0.011 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999876543
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.43 E-value=0.031 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.++|++|+|||++|+.+.+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999998863
No 244
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.41 E-value=0.015 Score=51.81 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ 155 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 155 (276)
...+++|+|.+|+|||||++.+....... ...+++.....+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~ 332 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTF 332 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCccc
Confidence 35699999999999999999999887654 334444433333
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.40 E-value=0.018 Score=48.62 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
....+++|+|.+|+||||++..+.......
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346799999999999999999998877654
No 246
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.40 E-value=0.0078 Score=48.67 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|+.|+|||||.+.+..-..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987654
No 247
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.39 E-value=0.029 Score=44.36 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDK 141 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 141 (276)
..|.+.|+.|+||||+++.+.......+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999887653
No 248
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.39 E-value=0.011 Score=47.57 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.|.|.|..|+||||+++.+.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998863
No 249
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.39 E-value=0.0098 Score=49.79 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.-.+++|+|++|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344689999999999999999988654
No 250
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.39 E-value=0.01 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...++|+|.+|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 251
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.35 E-value=0.011 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.++|.|.|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998765
No 252
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.34 E-value=0.032 Score=44.08 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCe
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQ 145 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 145 (276)
...|.+.|+.|+||||+++.+.......+ +..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERG-IEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTT-CCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCc
Confidence 35899999999999999999998887552 444
No 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.34 E-value=0.0062 Score=50.68 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999887543
No 254
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.33 E-value=0.029 Score=45.14 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=26.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFD 144 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 144 (276)
...|.|.|++|+||||+++.+........ +.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~-~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG-ID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT-CC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC-CC
Confidence 46899999999999999999999887652 54
No 255
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.31 E-value=0.01 Score=44.57 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.30 E-value=0.011 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.++|.|+|+.|+|||||+..+.....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999998764
No 257
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.29 E-value=0.0098 Score=48.63 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.+++|+|+.|+|||||.+.+..-..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999987653
No 258
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.27 E-value=0.0088 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+++|+|+.|+|||||.+.+..-..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999987654
No 259
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.26 E-value=0.0092 Score=48.60 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999877653
No 260
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.25 E-value=0.011 Score=48.79 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-.++.|+|.+|+|||||+..+.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999887554
No 261
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.24 E-value=0.016 Score=49.68 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 358999999999999999999887654
No 262
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.23 E-value=0.013 Score=49.10 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..++|.|+|+.|+||||||..+.....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999987753
No 263
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.23 E-value=0.011 Score=50.78 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+.+.++|++|+|||++|+.+.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998873
No 264
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.20 E-value=0.015 Score=47.10 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..++.+.|.||+||||++..+.....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56888899999999999999987765
No 265
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.20 E-value=0.014 Score=44.80 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.++...|+++|.+|+|||||...+.+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998654
No 266
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.18 E-value=0.015 Score=46.62 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999988754
No 267
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.15 E-value=0.011 Score=49.42 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-.+++|+|+.|+|||||++.+..-...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 3458999999999999999999876654
No 268
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.13 E-value=0.025 Score=48.64 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=33.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 157 (276)
-.++.|+|.+|+||||||..+....... -..++|++.....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDP 116 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhH
Confidence 4589999999999999999988776543 246788887665543
No 269
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.13 E-value=0.016 Score=50.07 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.....++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 270
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.10 E-value=0.019 Score=43.71 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
+....|+++|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998765
No 271
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.09 E-value=0.0092 Score=45.66 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 041612 115 MLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 272
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.07 E-value=0.014 Score=44.58 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
...|+++|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 273
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.05 E-value=0.013 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+.++|++|+|||++|+.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998773
No 274
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.05 E-value=0.015 Score=51.56 Aligned_cols=48 Identities=8% Similarity=-0.080 Sum_probs=32.7
Q ss_pred ceeCCCCCHHHHHHHHHHhhC--CCCCChhHHHHHHHHHHHc-CCCcHHHHHHH
Q 041612 213 NFSIGVLNEEEAWSLFKKMAG--DYIEDSEFQSIARDVAKEC-AGLPVSIVTIA 263 (276)
Q Consensus 213 ~~~l~~L~~~ea~~Lf~~~~~--~~~~~~~~~~~~~~i~~~c-~G~PLai~~i~ 263 (276)
.+++.+++.++..+++...+. ....++ +....|+..+ .|.|..+..+.
T Consensus 360 ~~~~~~~~~~e~~~iL~~~~~~~~~~~~~---~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 360 IIRTMLYTPQEMKQIIKIRAQTEGINISE---EALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHHHSCHHHHHHTH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHccCCCHHHHHHHH
Confidence 478999999999999987763 222222 3456777777 78887655543
No 275
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.017 Score=44.26 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+++|.+|+|||||...+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998764
No 276
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.04 E-value=0.03 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-+.|+|++|+|||+||+.+.+...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 277
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.04 E-value=0.015 Score=44.07 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 104 ILSALED-PDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 104 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
+.+.+.. .....|+++|.+|+|||||...+.+.
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3333444 55678999999999999999988743
No 278
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.03 E-value=0.051 Score=46.11 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=37.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGDK 167 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 167 (276)
-.++.|.|.+|+||||||..+....... =..+.|++. ..+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 3589999999999999999998887653 245667665 45566666666543
No 279
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.03 E-value=0.024 Score=42.69 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+....|+++|.+|+|||||...+.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345689999999999999999998654
No 280
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.02 E-value=0.024 Score=46.31 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=27.7
Q ss_pred HHHHhhcCC-C-ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 103 NILSALEDP-D-VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 103 ~l~~~L~~~-~-~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
-+..+|... . ...+.++|++|+|||.+|..+.+.
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 566677654 2 457999999999999999999885
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.00 E-value=0.016 Score=42.92 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 282
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.99 E-value=0.037 Score=47.19 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=27.4
Q ss_pred HHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 105 LSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 105 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+.....+++.+.|.||+||||+|..+.....
T Consensus 10 ~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 10 ESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3445556678999999999999999999887766
No 283
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.98 E-value=0.021 Score=49.00 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-.+++|+|+.|+|||||.+.+..-...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCC
Confidence 3458999999999999999999877654
No 284
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.97 E-value=0.021 Score=49.31 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|++|+|||||.+.+..-...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCC
Confidence 358999999999999999999887654
No 285
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.97 E-value=0.034 Score=46.32 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
....++|+|+|-||+||||+|..+.......+ ..+.-++..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D 78 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCD 78 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEES
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 34678999999999999999999888776542 234555544
No 286
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.97 E-value=0.021 Score=48.91 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 358999999999999999999877653
No 287
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.95 E-value=0.019 Score=45.11 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.....|.++|.+|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998765
No 288
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.95 E-value=0.012 Score=48.15 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998765
No 289
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.95 E-value=0.022 Score=48.76 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999877653
No 290
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.93 E-value=0.014 Score=45.53 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-+.|.|.|++|+||||||..+.....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 46789999999999999999987653
No 291
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.93 E-value=0.046 Score=42.59 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.|+|-|..|+||||.++.+.+....+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999988765
No 292
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.92 E-value=0.022 Score=48.87 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 458999999999999999999877653
No 293
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.022 Score=43.51 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.4
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 109 EDPDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 109 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.......|+++|.+|+|||||...+.+.
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3445568999999999999999999854
No 294
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.90 E-value=0.011 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999998775
No 295
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.90 E-value=0.042 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+|+|.+|+|||||...+.+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988764
No 296
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.89 E-value=0.023 Score=49.00 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCC
Confidence 358999999999999999999877653
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.88 E-value=0.018 Score=42.83 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|.++|.+|+|||||...+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998764
No 298
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.88 E-value=0.016 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...++|+|.+|+|||||++.+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999887654
No 299
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.88 E-value=0.04 Score=46.72 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=32.3
Q ss_pred hhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc
Q 041612 107 ALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN 154 (276)
Q Consensus 107 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 154 (276)
.+.....+++.+.|.||+||||+|..+.......+ ..+.-++....
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~ 55 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPA 55 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSS
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCC
Confidence 34445577888899999999999999888776542 23445554433
No 300
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.84 E-value=0.019 Score=43.74 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+.+|+|..|+|||||...++.-.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999987654
No 301
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.84 E-value=0.037 Score=46.98 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
....+++|+|.+|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34569999999999999999999876543
No 302
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.83 E-value=0.041 Score=43.82 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=25.8
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 109 EDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 109 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.......|.+.|+.|+||||+++.+......
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3345678999999999999999999988765
No 303
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.81 E-value=0.024 Score=48.78 Aligned_cols=27 Identities=30% Similarity=0.291 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 458999999999999999999876643
No 304
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.81 E-value=0.02 Score=48.91 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 358999999999999999999877654
No 305
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.79 E-value=0.0098 Score=48.55 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.....|+|.|..|+||||+++.+....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999988765
No 306
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.79 E-value=0.017 Score=43.68 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 307
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.79 E-value=0.014 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.-+.++|++|+|||+||+.+.+...
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3688999999999999999988664
No 308
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.78 E-value=0.018 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|+++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998764
No 309
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.77 E-value=0.021 Score=44.02 Aligned_cols=26 Identities=23% Similarity=0.009 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.++.|+|+.|+||||++..+..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999777766543
No 310
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.76 E-value=0.013 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.-+.++|++|+|||+||+.+.+...
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3688999999999999999998774
No 311
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.76 E-value=0.043 Score=43.94 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCH
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDI 157 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 157 (276)
.|+|.|.||+||||+|..+.......+ ..+.-++.....+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l 42 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcCh
Confidence 467799999999999999998887653 34555555543443
No 312
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.76 E-value=0.017 Score=52.38 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....+.++|++|+||||||+.+.....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999998874
No 313
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.75 E-value=0.021 Score=43.96 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=25.5
Q ss_pred HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 104 ILSALEDPDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 104 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
+.+.+.......|+|+|.+|+|||||...+...
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 344444555668999999999999999998653
No 314
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.74 E-value=0.02 Score=43.81 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998764
No 315
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.74 E-value=0.021 Score=45.69 Aligned_cols=26 Identities=31% Similarity=0.240 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-..++|.|++|+||||+|+.+.....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988764
No 316
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.73 E-value=0.02 Score=54.11 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=28.9
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.++..+......-+.++|++|+|||++|+.+.+..
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 56666655556678999999999999999999886
No 317
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.72 E-value=0.021 Score=43.63 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+++|.+|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 45689999999999999999998775
No 318
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.71 E-value=0.017 Score=47.99 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 458999999999999999999877653
No 319
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.68 E-value=0.019 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+++|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 320
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.67 E-value=0.021 Score=42.31 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|+++|.+|+|||||...+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997654
No 321
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.67 E-value=0.02 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999987754
No 322
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.67 E-value=0.023 Score=46.28 Aligned_cols=37 Identities=24% Similarity=0.526 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
++|+|.|-||+||||+|..+......++ ..+.-++..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCC
Confidence 5788899999999999999988876542 234445443
No 323
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.67 E-value=0.019 Score=43.00 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.66 E-value=0.02 Score=42.44 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.|+++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999988664
No 325
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.66 E-value=0.023 Score=42.75 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+++|.+|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34579999999999999999998764
No 326
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.65 E-value=0.02 Score=42.59 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988765
No 327
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.64 E-value=0.018 Score=49.19 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999876643
No 328
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.64 E-value=0.023 Score=45.23 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-.|.+.|.||+||||+|..+......+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 357888999999999999988887655
No 329
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.63 E-value=0.012 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
-+.|+|.+|+|||+||+.+.+...
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 489999999999999999998764
No 330
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.63 E-value=0.022 Score=42.47 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|+++|.+|+|||||...+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3478999999999999999998764
No 331
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.62 E-value=0.028 Score=43.51 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
....|+++|.+|+|||||...+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998753
No 332
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.62 E-value=0.02 Score=42.60 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.|.++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998765
No 333
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.61 E-value=0.02 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998764
No 334
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.60 E-value=0.023 Score=51.29 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|.++|++|.||||+|+.+.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987664
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.59 E-value=0.023 Score=42.84 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+++|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 35578999999999999999988764
No 336
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.59 E-value=0.019 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..++++|.|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36789999999999999999998764
No 337
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.58 E-value=0.024 Score=46.84 Aligned_cols=28 Identities=29% Similarity=0.562 Sum_probs=24.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.++|+|.|.||+||||+|..+......+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 4688899999999999999988887654
No 338
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.57 E-value=0.12 Score=44.26 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
++.++|+|+|.+|+|||||.+.+.+...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4577899999999999999999887643
No 339
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.56 E-value=0.024 Score=42.24 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|+++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999988654
No 340
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.55 E-value=0.022 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
-.|+++|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 341
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.021 Score=42.61 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.|.++|.+|+|||||...+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 342
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.53 E-value=0.74 Score=39.15 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.+...++++|.+|+|||||...+....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999987654
No 343
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.53 E-value=0.022 Score=42.85 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998654
No 344
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.51 E-value=0.024 Score=42.70 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|+++|.+|+|||||...+.+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 3468999999999999999987654
No 345
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.51 E-value=0.022 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999998887664
No 346
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.51 E-value=0.022 Score=49.39 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
++|.|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998765
No 347
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.49 E-value=0.026 Score=48.20 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-.+++|+|..|+|||||.+.+.+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4458999999999999999999998754
No 348
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.48 E-value=0.029 Score=41.87 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.++|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999997654
No 349
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.45 E-value=0.021 Score=43.53 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.....|.++|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998665
No 350
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.44 E-value=0.027 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+..+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999987543
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.43 E-value=0.024 Score=42.13 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|+++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 352
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.42 E-value=0.024 Score=43.47 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|.++|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4578999999999999999988764
No 353
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.42 E-value=0.026 Score=43.43 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998743
No 354
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.41 E-value=0.023 Score=50.04 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+-+.++|++|+|||++|+.+......
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 456899999999999999999988754
No 355
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.39 E-value=0.029 Score=48.06 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 345999999999999999999877654
No 356
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.37 E-value=0.023 Score=42.22 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
-.|+++|.+|+|||||...+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 36899999999999999988643
No 357
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.36 E-value=0.026 Score=43.17 Aligned_cols=25 Identities=36% Similarity=0.230 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.++|.+|+|||||.+.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999998776543
No 358
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.35 E-value=0.025 Score=42.97 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.|+++|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998765
No 359
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.34 E-value=0.026 Score=42.42 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.++|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998765
No 360
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.33 E-value=0.028 Score=42.56 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998764
No 361
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.043 Score=43.87 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=31.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEI 164 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 164 (276)
-.++.|.|.+|+|||++|.++..+...+. -..++|++.. .+...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 45899999999999999998765532210 2345565553 3455555443
No 362
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.31 E-value=0.025 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.30 E-value=0.026 Score=42.87 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...|.++|.+|+|||||...+.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45789999999999999999987643
No 364
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.30 E-value=0.021 Score=43.15 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.|.++|.+|+|||+|...+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999988754
No 365
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.28 E-value=0.026 Score=43.23 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999988754
No 366
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.28 E-value=0.032 Score=42.99 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+++|.+|+|||||...+.+..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998764
No 367
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.27 E-value=0.029 Score=43.27 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
...|+|+|.+|+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999998753
No 368
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.27 E-value=0.027 Score=42.94 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 369
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.26 E-value=0.023 Score=43.00 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998654
No 370
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.26 E-value=0.027 Score=42.33 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|+++|.+|+|||||...+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998654
No 371
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.25 E-value=0.027 Score=42.63 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
-.|+++|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999988654
No 372
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.25 E-value=0.036 Score=42.53 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..-.|+|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998774
No 373
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.24 E-value=0.018 Score=44.89 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=23.6
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 108 LEDPDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 108 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.......|+|+|.+|+|||||.+.+....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444455689999999999999999887554
No 374
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.24 E-value=0.029 Score=49.91 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
....+|.++|++|+||||+++.+......
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34568999999999999999999877653
No 375
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.22 E-value=0.032 Score=43.60 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..+|+|.|+.|+||||+++.+......
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 358999999999999999999887754
No 376
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.22 E-value=0.025 Score=48.50 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..++|+|+.|+|||||.+.+......
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 48999999999999999999987754
No 377
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.22 E-value=0.058 Score=45.84 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+..+++|+|.+|+|||||+..+.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999876654
No 378
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.21 E-value=0.023 Score=45.36 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-..|.|.|+.|+||||+++.+.......
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999999887643
No 379
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.21 E-value=0.025 Score=43.05 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|+++|.+|+|||||...+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC
Confidence 358999999999999999988764
No 380
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.20 E-value=0.028 Score=44.57 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.....|+++|.+|+|||||...+.+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999987763
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.18 E-value=0.066 Score=46.86 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=25.0
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 110 DPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 110 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...-.+++|+|+.|+|||||.+.+......
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 344568999999999999999999887654
No 382
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.18 E-value=0.029 Score=42.48 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.++|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 383
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.18 E-value=0.028 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..|.|+|.+|+|||++|+.+.+...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEECCCCchHHHHHHHHHHhCc
Confidence 4578999999999999999998654
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.17 E-value=0.041 Score=47.38 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..-.+++|+|+.|+|||||.+.+.....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999887654
No 385
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.15 E-value=0.03 Score=42.31 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|+++|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988654
No 386
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.15 E-value=0.029 Score=42.31 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.++|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3478999999999999999988764
No 387
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.15 E-value=0.072 Score=41.73 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+.|+|-|..|+||||+++.+.....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3688999999999999999998885
No 388
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.031 Score=42.81 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4578999999999999999998765
No 389
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.13 E-value=0.029 Score=44.90 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....|+|+|.+|+|||||...+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 456899999999999999999987654
No 390
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.12 E-value=0.033 Score=43.51 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|.++|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999998765
No 391
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.03 Score=42.15 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...|+++|.+|+|||||...+.+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 45789999999999999999887653
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.11 E-value=0.023 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 041612 115 MLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.|+|+|.+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999998754
No 393
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.11 E-value=0.03 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999988664
No 394
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.09 E-value=0.028 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999998763
No 395
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.06 E-value=0.031 Score=45.76 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998764
No 396
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.04 E-value=0.14 Score=40.71 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~ 134 (276)
+.+.+.|..|+||||+.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 478999999999998665543
No 397
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.03 E-value=0.035 Score=42.24 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
+-+.|.|.+|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46889999999999999998875
No 398
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.02 E-value=0.034 Score=43.02 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34579999999999999999998765
No 399
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.031 Score=42.93 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998765
No 400
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.028 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+++|+|+.|+|||||++.+..-..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CEEEEECCCCCCHHHHHHHHhCccc
Confidence 5799999999999999999987653
No 401
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.02 E-value=0.031 Score=43.62 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 402
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.032 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999988654
No 403
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.98 E-value=0.028 Score=53.51 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.....+.|+|++|+||||||+.+.+...
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999988754
No 404
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.98 E-value=0.025 Score=51.34 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|++|+|||||++.+......
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 358999999999999999999988764
No 405
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.96 E-value=0.034 Score=42.51 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998765
No 406
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.95 E-value=0.034 Score=42.52 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...|+|+|.+|+|||||...+.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35789999999999999999987543
No 407
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.95 E-value=0.036 Score=42.88 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
....|+|+|.+|+|||||...+.+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 355799999999999999999987653
No 408
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.94 E-value=0.039 Score=43.69 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...|.+.|+.|+||||+++.+......
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 358999999999999999999998764
No 409
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.93 E-value=0.034 Score=42.66 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.-.|.++|.+|+|||||...+.+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45789999999999999999987653
No 410
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.93 E-value=0.051 Score=41.56 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...|.|+|.+|+|||||...+.+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 45799999999999999999987653
No 411
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.91 E-value=0.031 Score=42.04 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+|+|.+|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999987653
No 412
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.89 E-value=0.039 Score=42.59 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+....|+|+|.+|+|||||...+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 445689999999999999999998654
No 413
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.88 E-value=0.03 Score=43.32 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIA 134 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~ 134 (276)
....|+|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35589999999999999999985
No 414
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.88 E-value=0.032 Score=43.14 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988764
No 415
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.88 E-value=0.036 Score=42.49 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3478999999999999999988754
No 416
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.86 E-value=0.04 Score=48.58 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
..-.+++|+|..|+|||||.+.+.+....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34458999999999999999999988754
No 417
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.85 E-value=0.036 Score=42.72 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|.++|.+|+|||+|.+.+.+..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 35579999999999999999877643
No 418
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.83 E-value=0.037 Score=42.29 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|.++|.+|+|||||...+.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34579999999999999999988654
No 419
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.82 E-value=0.028 Score=47.61 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..++|+|..|+|||||.+.+.......
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 489999999999999999998877543
No 420
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.81 E-value=0.03 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 041612 115 MLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.++|+|.+|+|||||.+.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999999875
No 421
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.79 E-value=0.041 Score=42.02 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..|+++|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999999998764
No 422
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.78 E-value=0.041 Score=45.94 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+|...+.. .+++++|++|+|||||.+.+. ...
T Consensus 158 ~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 158 ELVDYLEG---FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 55555543 489999999999999999998 554
No 423
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.76 E-value=0.047 Score=48.35 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=34.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEI 164 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 164 (276)
-.++.|.|.+|+|||||+..+........ =..++|++... +...+...+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence 45899999999999999999988876431 12577776543 445555554
No 424
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.73 E-value=0.026 Score=44.37 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.....|+|+|.+|+|||||...+.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998775
No 425
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.72 E-value=0.077 Score=41.05 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=27.7
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCc
Q 041612 114 NMLGIY-GMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQN 154 (276)
Q Consensus 114 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 154 (276)
++|+|+ +.||+||||+|..+......++ ..+..++....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCC
Confidence 578887 6799999999999888776542 23555555433
No 426
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.053 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34578999999999999999998754
No 427
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.71 E-value=0.034 Score=43.03 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999987553
No 428
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.70 E-value=0.042 Score=48.00 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+++|+|.+|+|||||.+.+....
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999999843
No 429
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.70 E-value=0.035 Score=42.82 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.++|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999987654
No 430
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.70 E-value=0.039 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+++|+|++|+|||||.+.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4899999999999999999987654
No 431
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.70 E-value=0.038 Score=42.83 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 432
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.64 E-value=0.042 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+.|+++|.+|+|||||...+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 578999999999999999998763
No 433
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.62 E-value=0.077 Score=45.64 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=30.5
Q ss_pred CCccEEEEEc-CCCCcHHHHHHHHHHhcccCCCCCeEEEEEecC
Q 041612 111 PDVNMLGIYG-MGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQ 153 (276)
Q Consensus 111 ~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 153 (276)
...++|+|+| .||+||||+|..+......++ ..+..++...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD~D~ 182 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMG--KKVFYLNIEQ 182 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEECCT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCC--CCEEEEECCC
Confidence 4578999985 899999999999887765541 2466666553
No 434
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.59 E-value=0.047 Score=42.42 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
..-.|+++|.+|+|||||...+.+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC
Confidence 345789999999999999999886543
No 435
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.59 E-value=0.044 Score=42.06 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46689999999999999999987654
No 436
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.58 E-value=0.042 Score=43.28 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIAR 135 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~ 135 (276)
...|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999874
No 437
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.57 E-value=0.058 Score=49.23 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|.|.|++|+||||+|+.+.....
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999988765
No 438
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.56 E-value=0.039 Score=41.86 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.++|.+|+|||||...+.+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998653
No 439
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.043 Score=42.06 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998764
No 440
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.042 Score=42.72 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 441
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.50 E-value=0.044 Score=42.50 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|+|.+|+|||||...+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4579999999999999999987654
No 442
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.49 E-value=0.039 Score=43.28 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3479999999999999999987643
No 443
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.48 E-value=0.043 Score=49.70 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||++.++.....
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999987654
No 444
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.48 E-value=0.044 Score=42.67 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..-.|.|+|.+|+|||||...+.+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988654
No 445
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.47 E-value=0.051 Score=42.23 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999988654
No 446
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.45 E-value=0.13 Score=40.16 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=29.6
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHH
Q 041612 115 MLGIY-GMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIR 158 (276)
Q Consensus 115 vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (276)
+|+++ +.||+||||++..+......++ .+.-++.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHH
Confidence 56665 6799999999999998887652 56666665544433
No 447
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.44 E-value=0.046 Score=43.22 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.|.|+|-+|+|||+|...+.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 58899999999999999987654
No 448
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.44 E-value=0.05 Score=50.05 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|.+.|++|+||||+|+.+.....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999988763
No 449
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.42 E-value=0.046 Score=42.28 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3478999999999999999998754
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.41 E-value=0.045 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+++|+|+.|+|||||.+.+.....
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999987654
No 451
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.40 E-value=0.042 Score=45.99 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
+....|+|+|.+|+|||||...+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 346789999999999999999998764
No 452
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.39 E-value=0.061 Score=39.82 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
..+.+|+|+.|.|||||...++.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999887543
No 453
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.39 E-value=0.049 Score=44.11 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999997654
No 454
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.38 E-value=0.083 Score=48.57 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
..+.|+|++|+||||||+.+.......
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 578999999999999999999877543
No 455
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.36 E-value=0.097 Score=45.21 Aligned_cols=50 Identities=18% Similarity=0.113 Sum_probs=31.9
Q ss_pred HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcccC-CCCCeEEEEEecCc
Q 041612 104 ILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVKSD-KLFDQVVFVEVSQN 154 (276)
Q Consensus 104 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 154 (276)
.++.+.. ..-..++|+|.+|+|||||++.+.+....+ ..+.+ +++-+++.
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER 215 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDER 215 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSC
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCC
Confidence 3344433 234589999999999999999988776432 11333 34555544
No 456
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.35 E-value=0.058 Score=42.91 Aligned_cols=28 Identities=18% Similarity=-0.114 Sum_probs=23.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
-.++.++|..|+||||++..+.++...+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 4688999999999999999988887654
No 457
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.33 E-value=0.079 Score=46.75 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=34.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIG 165 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 165 (276)
-.++.|.|.+|+|||++|..+..+...++ ..+.|++.-. +..++...++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHH
Confidence 45899999999999999999988876542 3567766543 3444444443
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.039 Score=49.95 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.-.+++|+|+.|+|||||.+.+......
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3468999999999999999999876543
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.33 E-value=0.049 Score=42.71 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
.-.|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3478999999999999999988764
No 460
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.32 E-value=0.024 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 041612 115 MLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.|+|+|.+|+|||||...+.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999988765
No 461
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.31 E-value=0.15 Score=44.98 Aligned_cols=51 Identities=16% Similarity=0.027 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHH
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGD 166 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 166 (276)
-.++.|.|.+|+|||+|+..+........ =..++|++.. .+...+...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 45899999999999999999988775431 1356776653 455666666554
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.30 E-value=0.055 Score=48.17 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||.+.+..-...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999999999999877654
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.29 E-value=0.041 Score=49.87 Aligned_cols=26 Identities=35% Similarity=0.682 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||++.++.-...
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 47999999999999999999987654
No 464
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.29 E-value=0.066 Score=42.60 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
...+|+|.|+.|+||||+|+.+.....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 346999999999999999999987654
No 465
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.27 E-value=0.028 Score=42.63 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=10.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEECCCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999887553
No 466
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.25 E-value=0.37 Score=40.62 Aligned_cols=156 Identities=7% Similarity=0.009 Sum_probs=87.6
Q ss_pred HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHHH--HhCCC------cccc
Q 041612 104 ILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIGD--KLGLK------FHEE 175 (276)
Q Consensus 104 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~--~l~~~------~~~~ 175 (276)
+.+.+...-.++..++|..|.||++.+..+....... .|+....+.+....+...+...+.. .++.. ..+.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 4444443446789999999999999999988776432 1433222234455677777655422 12211 0011
Q ss_pred -cchh---hhhhccccCCCCcEEEEEeccc-------cccccCCCCCCceeCCCCCHHHHHHHHHHhhCCCCCChhHHHH
Q 041612 176 -SESG---RANSLFTHGHKGCKVLLTARSQ-------DVLSGKMDSRPNFSIGVLNEEEAWSLFKKMAGDYIEDSEFQSI 244 (276)
Q Consensus 176 -~~~~---~~~~l~~~~~~gs~IivTTR~~-------~va~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 244 (276)
.... .+....+..++++.+|++|-.. .+..........++..+++.++....+.+.+..... .--.+.
T Consensus 88 kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~-~i~~~a 166 (343)
T 1jr3_D 88 GPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL-ELDDAA 166 (343)
T ss_dssp CCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTC-EECHHH
T ss_pred CCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHH
Confidence 1111 1223333556678888776431 222222333457888899998888877776641111 011234
Q ss_pred HHHHHHHcCCCcHHHHH
Q 041612 245 ARDVAKECAGLPVSIVT 261 (276)
Q Consensus 245 ~~~i~~~c~G~PLai~~ 261 (276)
...++..++|-+..+..
T Consensus 167 ~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 167 NQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHhchHHHHHHH
Confidence 66788888887776654
No 467
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.24 E-value=0.035 Score=42.68 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|+|.+|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987554
No 468
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.24 E-value=0.05 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999875
No 469
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.23 E-value=0.13 Score=43.30 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.++...|.||+||||+|..+.......
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 455566899999999999988776554
No 470
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.22 E-value=0.05 Score=45.39 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+|+|.+|+|||||...+....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998764
No 471
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.17 E-value=0.046 Score=45.57 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=26.7
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
++...+.. .+++++|++|+|||||.+.+......
T Consensus 162 ~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 162 ELKEYLKG---KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred HHHHHhcC---CeEEEECCCCCcHHHHHHHhcccccc
Confidence 55555543 48999999999999999999876654
No 472
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.14 E-value=0.039 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 115 MLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 115 vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.|+|+|.+|+|||||.+.++....
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 469999999999999999987643
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.052 Score=49.88 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|+|||||.+.+..-...
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 358999999999999999999876654
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.11 E-value=0.053 Score=49.84 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||.+.+......
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 48999999999999999999987654
No 475
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.06 E-value=0.048 Score=42.62 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|+|.+|+|||||...+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988653
No 476
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.01 E-value=0.037 Score=42.33 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988765
No 477
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.00 E-value=0.066 Score=40.77 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHh
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARK 136 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 136 (276)
.....|+++|.+|+|||||...+...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 44567999999999999999988543
No 478
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.00 E-value=0.052 Score=48.73 Aligned_cols=28 Identities=4% Similarity=-0.091 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
...+|.+.|++|+||||+|+.+......
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999999864
No 479
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.97 E-value=0.059 Score=43.49 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999988654
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.06 Score=49.46 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||++.+..-...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 46899999999999999999987654
No 481
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.86 E-value=0.21 Score=42.64 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
+...++...|.||+||||+|..+.....
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3345666679999999999998887776
No 482
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.86 E-value=0.03 Score=46.92 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+++|+|++|+|||||.+.+.....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 5899999999999999999876543
No 483
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.86 E-value=0.083 Score=48.32 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
-.+++|+|+.|.|||||++.+..-...
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999877654
No 484
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.85 E-value=0.09 Score=41.02 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...+|+|+|++|+||+|.|..+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45699999999999999999887654
No 485
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.83 E-value=0.087 Score=43.46 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 112 DVNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 112 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999998764
No 486
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.83 E-value=0.053 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+++|+|+.|+|||||.+.+..-...
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p 395 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDI 395 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCC
Confidence 48999999999999999999877654
No 487
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.77 E-value=0.065 Score=42.22 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|.|+|.+|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988764
No 488
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.76 E-value=0.17 Score=42.71 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
+..+++.+.|.||+||||+|..+.......
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~ 46 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKV 46 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHC
Confidence 345566678999999999999988777654
No 489
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.57 E-value=0.28 Score=43.44 Aligned_cols=64 Identities=22% Similarity=0.354 Sum_probs=46.2
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCC-HHHHHHHHHHH
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQD-IRKIQEEIGDK 167 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i~~~ 167 (276)
+.++.|.. ..-..++|.|.+|+|||+|+..+.++.... +-+.++++-+++... ..++.+++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 66666665 234579999999999999999998876432 346778888877653 46666666554
No 490
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.53 E-value=0.16 Score=41.25 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=30.1
Q ss_pred CCccEEEEE-cCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC
Q 041612 111 PDVNMLGIY-GMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ 155 (276)
Q Consensus 111 ~~~~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 155 (276)
...++|+|+ +-||+||||+|..+..... ++ ..+.-++.....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~ 67 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KN--NKVLLIDMDTQA 67 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEECCCCC
Confidence 456788886 5789999999999988887 53 345556655443
No 491
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.53 E-value=0.059 Score=49.52 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcc
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVK 138 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~ 138 (276)
.+++|+|+.|+|||||.+.+.....
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 5899999999999999999987654
No 492
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.52 E-value=0.076 Score=43.18 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...|+++|.+|+|||||...+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 3568999999999999999998754
No 493
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.49 E-value=0.11 Score=46.12 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=27.7
Q ss_pred HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHhcccC
Q 041612 103 NILSALEDPDVNMLGIYGMGGIGKTMLAEEIARKVKSD 140 (276)
Q Consensus 103 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 140 (276)
.+...+...+ +.+.|.|.+|+|||+++..+.......
T Consensus 36 ~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 36 IVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 3333444433 389999999999999999998887655
No 494
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.44 E-value=0.19 Score=46.00 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEec
Q 041612 111 PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVS 152 (276)
Q Consensus 111 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 152 (276)
...+++.+.|.||+||||+|..+.......+ ..+..++..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G--~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQG--KRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCC--CcEEEEECC
Confidence 4567888899999999999999888776542 234455444
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.42 E-value=0.069 Score=48.18 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEI 133 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v 133 (276)
.+++|+|.+|+|||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
No 496
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.40 E-value=0.088 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKV 137 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~ 137 (276)
...++|+|.+|+|||||.+.+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999998764
No 497
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.32 E-value=0.14 Score=47.53 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIG 165 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 165 (276)
.+..|.|+||+|||+.+..+....-.+ ...+.++...+.....+...+.
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 367899999999997555444443322 2356777766666666666654
No 498
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.28 E-value=0.14 Score=45.36 Aligned_cols=52 Identities=23% Similarity=0.463 Sum_probs=35.1
Q ss_pred HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcC
Q 041612 103 NILSALED-PDVNMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQ 155 (276)
Q Consensus 103 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 155 (276)
+.++.|.. -.-..++|+|.+|+|||||+..+..+...+. -+..+++.+++..
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGert 192 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERT 192 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCc
Confidence 44555543 1234689999999999999999988766431 2445666666554
No 499
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.28 E-value=0.14 Score=47.18 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhcccCCCCCeEEEEEecCcCCHHHHHHHHH
Q 041612 114 NMLGIYGMGGIGKTMLAEEIARKVKSDKLFDQVVFVEVSQNQDIRKIQEEIG 165 (276)
Q Consensus 114 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 165 (276)
+...|.|++|+|||+++..+....... -...+.++.........+...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHH
Confidence 478899999999999887777665432 23466677666655566655553
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.25 E-value=0.049 Score=51.89 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHhccc
Q 041612 113 VNMLGIYGMGGIGKTMLAEEIARKVKS 139 (276)
Q Consensus 113 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 139 (276)
.+.+.++|++|+|||+||+.+.+....
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 456889999999999999999988754
Done!