BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041613
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 219/336 (65%), Gaps = 14/336 (4%)
Query: 26 EIKRTLERICNKN-----TEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSS 80
+I+R L+R + T+ SL+ AL FR+LRQ+G++ +E FS F D+ G+F +
Sbjct: 86 DIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVS-QEAFSGFKDQNGNFLENL 144
Query: 81 HGDDCKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNH 140
+D K + +EGE+ I +A F ++LKE + + + L VNH
Sbjct: 145 K-EDTKAILSLYEASFLALEGEN-ILDEARVFAISHLKELSEEKIGKE-----LAEQVNH 197
Query: 141 ALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKK 200
ALELPLH RT+RLEA W I+ Y+ + N +LL+LA LD+N++Q+V+Q D++ SRWW++
Sbjct: 198 ALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRR 257
Query: 201 TGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDEL 260
GL +L+FARDR++E+F+W VGV FEP + CR + + +T IDD+YDVYGTLDEL
Sbjct: 258 VGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDEL 317
Query: 261 ELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADI 320
ELFTDAVERWD I LP+YMKLCF AL+N+INE+A+D L+D+G ++ YL KAWAD+
Sbjct: 318 ELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN-ILPYLTKAWADL 376
Query: 321 CKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
C +L EAK N PT +Y NAW S S P+ L
Sbjct: 377 CNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQL 412
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 297 bits (760), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 208/322 (64%), Gaps = 10/322 (3%)
Query: 36 NKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMXXXXXXX 95
N+ E+ LY+ AL+FR+LRQY + +E F CF + KG+ S DD +G+
Sbjct: 118 NEIDERDLYSTALRFRLLRQYDFSVS-QEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEAS 176
Query: 96 XXXVEGESSIFRDAISFTTAYL-KEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLE 154
+GE ++ R A F T +L K D N L + + ALELP HWR +
Sbjct: 177 FLSAQGEETL-RLARDFATKFLQKRVLVDKDIN------LLSSIERALELPTHWRVQMPN 229
Query: 155 ARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRI 214
AR FID Y+ P+ NP +L+LAKLDFN+VQA Q+++K ASRWW TGL L F RDRI
Sbjct: 230 ARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRI 289
Query: 215 MENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTT 274
+E ++WT GV+ GY R M T +NAL+TTIDDV+D+YGTL+EL+LFT A++RWD +
Sbjct: 290 VECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIES 349
Query: 275 IEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNG 334
++QLP YM++C+ AL N +NEMA+D LRD+G YL+K W + ++YL+EAK Y G
Sbjct: 350 MKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDST-PYLRKVWVGLIESYLIEAKWYYKG 408
Query: 335 YIPTLQEYMENAWISISAPVIL 356
+ P+L+EYM+N+WISI IL
Sbjct: 409 HKPSLEEYMKNSWISIGGIPIL 430
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 215/341 (63%), Gaps = 15/341 (4%)
Query: 25 DEIKRTL-----ERICNKNTE---KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSF 76
DEIK L E C N E LY AL FR+LRQ+G++ ++ F+CF +EKG
Sbjct: 75 DEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS-QDVFNCFKNEKGID 133
Query: 77 KSSSHGDDCKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCT 136
+S D KGM +GE ++ A F T L++ + N N L
Sbjct: 134 FKASLAQDTKGMLQLYEASFLLRKGEDTL-ELAREFATKCLQKKLDEGGNEIDEN--LLL 190
Query: 137 LVNHALELPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASR 196
+ H+L+LPLHWR + +EARWFID Y P+ NP++ +LAKL+FNI+QA HQ+++K SR
Sbjct: 191 WIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSR 250
Query: 197 WWKKTGLGERLNFARDRIMENFFWTVGVIFEPN-FGYCRRMSTMVNALITTIDDVYDVYG 255
WW + E+L F RDR++E+FFW VG +FEP+ GY R+M+ + L T IDD+YDVYG
Sbjct: 251 WWSRLCFPEKLPFVRDRLVESFFWAVG-MFEPHQHGYQRKMAATIIVLATVIDDIYDVYG 309
Query: 256 TLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKK 315
TLDELELFTD +RWDT +I +LP YM+LC+ +HN I++ A+D L++ G + YL+K
Sbjct: 310 TLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRK 368
Query: 316 AWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
+ D+ + Y EAK Y++GY P+L EY+ A IS+++P I+
Sbjct: 369 SVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII 409
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 209/317 (65%), Gaps = 8/317 (2%)
Query: 40 EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDCKGMXXXXXXXXXXV 99
E+ LY+ +L FR+LR++G+ +E F F +E+G FK S DD +G+
Sbjct: 95 ERDLYSTSLAFRLLREHGFQV-AQEVFDSFKNEEGEFKESL-SDDTRGLLQLYEASFLLT 152
Query: 100 EGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFI 159
EGE+++ A F T +L+E N + L T + ++L++PLHWR +R A +I
Sbjct: 153 EGETTL-ESAREFATKFLEEKV----NEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWI 207
Query: 160 DVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFF 219
+ Y+ P+ NP++L+LA LD NIVQA QE++K + RWW+ TG E+L FARDR++E +F
Sbjct: 208 EWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYF 267
Query: 220 WTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLP 279
W G+I R M VNALIT IDD+YDVYGTL+ELE FTD + RWD +I+QLP
Sbjct: 268 WNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLP 327
Query: 280 NYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTL 339
+YM+LCF AL+N +++ ++D ++++GV VI YL+++W D+ Y+VEA+ + G+ P+L
Sbjct: 328 DYMQLCFLALNNFVDDTSYDVMKEKGVN-VIPYLRQSWVDLADKYMVEARWFYGGHKPSL 386
Query: 340 QEYMENAWISISAPVIL 356
+EY+EN+W SIS P +L
Sbjct: 387 EEYLENSWQSISGPCML 403
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 184/323 (56%), Gaps = 12/323 (3%)
Query: 26 EIKRTLERIC--NKNTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGD 83
EI+ LE I N + E LYT +++FR+LR++GY+ + F+ F DE+G+FKSS D
Sbjct: 92 EIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSC-DVFNKFKDEQGNFKSSVTSD 150
Query: 84 DCKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALE 143
+G+ V GE I +AISFTT +L A D+ L V+HAL+
Sbjct: 151 -VRGLLELYQASYLRVHGED-ILDEAISFTTHHLSLAVASLDHP------LSEEVSHALK 202
Query: 144 LPLHWRTRRLEARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
+ R+EAR ++ VYQ + N LL+ AK+DFN++Q +H++++ RWWK
Sbjct: 203 QSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDF 262
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
+L +ARDR++E +FW GV FEP + R+M T V A+ + +DD YD Y T +EL +
Sbjct: 263 QRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPY 322
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
T+A+ERWD I+++P YMK + AL + EM + + G + Y K A + ++
Sbjct: 323 TNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMV-QLVAEHGRQYRVEYAKNAMIRLAQS 381
Query: 324 YLVEAKSYNNGYIPTLQEYMENA 346
YLVEAK Y P+ +E+ NA
Sbjct: 382 YLVEAKWTLQNYKPSFEEFKANA 404
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 179/322 (55%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 88 EIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 145
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 146 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 198
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 199 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 258
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +FWT+GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 259 VTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 318
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + +I +
Sbjct: 319 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEIVRN 377
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 378 YNVESTWFIEGYTPPVSEYLSN 399
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 86 EIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 143
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 144 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 196
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 256
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +FW +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 257 VTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 316
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 317 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 375
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 376 YNVESTWFIEGYTPPVSEYLSN 397
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 86 EIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 143
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 144 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 196
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 256
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +FW +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 257 VTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 316
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 317 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 375
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 376 YNVESTWFIEGYTPPVSEYLSN 397
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 73 EIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 130
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 131 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 183
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 184 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 243
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +FW +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 244 VTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 303
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 304 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 362
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 363 YNVESTWFIEGYTPPVSEYLSN 384
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 88 EIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 145
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 146 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 198
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 199 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 258
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +FW +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 259 VTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 318
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 319 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 377
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 378 YNVESTWFIEGYTPPVSEYLSN 399
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 86 EIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 143
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 144 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 196
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 256
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +FW +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 257 VTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 316
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 317 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 375
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 376 YNVESTWFIEGYTPPVSEYLSN 397
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 86 EIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 143
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 144 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 196
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 256
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +FW +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 257 VTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 316
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 317 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 375
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 376 YNVESTWFIEGYTPPVSEYLSN 397
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 86 EIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 143
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 144 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 196
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 256
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +F +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 257 VTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 316
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 317 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 375
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 376 YNVESTWFIEGYTPPVSEYLSN 397
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 12/322 (3%)
Query: 26 EIKRTLERICNKNTE-KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDD 84
EI L++I N+N+ L T AL+FR+LRQ+G++ E FS F DE G FK S D
Sbjct: 86 EIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFKESL-ASD 143
Query: 85 CKGMXXXXXXXXXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALEL 144
G+ + I DA++F+T +L+ A H L V HALE
Sbjct: 144 VLGLLNLYEASHVRTHADD-ILEDALAFSTIHLESAAP------HLKSPLREQVTHALEQ 196
Query: 145 PLHWRTRRLEARWFID-VYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGL 203
LH R+E R+FI +Y + N +LL AKLDFN++Q +H++++ SRWWK
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDF 256
Query: 204 GERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELF 263
L +ARDR++E +F +GV FEP + R M ++I+ +DD +D YGT+ ELE +
Sbjct: 257 VTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAY 316
Query: 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKT 323
TDA++RWD I++LP+YMK+ + A+ + + + L G ++ + + ++ +
Sbjct: 317 TDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKE-LSSAGRSHIVCHAIERMKEVVRN 375
Query: 324 YLVEAKSYNNGYIPTLQEYMEN 345
Y VE+ + GY P + EY+ N
Sbjct: 376 YNVESTWFIEGYTPPVSEYLSN 397
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 180/337 (53%), Gaps = 24/337 (7%)
Query: 38 NTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSS--HGDDCKGMXXXXXXX 95
N L T AL FR+LR + Y+ F F D G F S+ D M
Sbjct: 343 NPIADLETTALGFRLLRLHRYNVS-PAIFDNFKDANGKFICSTGQFNKDVASMLNLYRAS 401
Query: 96 XXXVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHN--EYLCTLVNHALELPLHWRTRRL 153
GE+ I +A SF T YL+E K + + N + L + +AL+ H R+
Sbjct: 402 QLAFPGEN-ILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRV 460
Query: 154 EARWFIDVYQSGPN--------------TNPILLDLAKLDFNIVQAVHQEDIKYASRWWK 199
EA+ + VY+ P+ N L+L KLDFNI+Q++HQE++K + W++
Sbjct: 461 EAKRYCQVYR--PDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFR 518
Query: 200 KTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDE 259
+GL FAR+R +E +F +EP + CR + T V L T +DD+YD YGTLDE
Sbjct: 519 DSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDE 577
Query: 260 LELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWAD 319
L+LFT+AV RWD + E LP+YMKLC+ ++ ++E+A++A ++QG +V S+ +K W D
Sbjct: 578 LKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELV-SFFRKGWED 636
Query: 320 ICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
Y EA+ Y+PTL EY++N SI ++L
Sbjct: 637 YLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILL 673
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 172/339 (50%), Gaps = 44/339 (12%)
Query: 46 VALKFRILRQYGYDTPVKETFSCFMDEKGSF----KSSSHGDDCKGMXXXXXXXXXXVEG 101
A+ RILR +GY+ + F DE G F + G M G
Sbjct: 323 TAMGLRILRLHGYNVS-SDVLKTFRDENGEFFCFLGQTQRG--VTDMLNVNRCSHVSFPG 379
Query: 102 ESSIFRDAISFTTAYLK----------EWAAKHDNNKHHNEYLCTLVNHALELPLHWRTR 151
E+ I +A T YL+ +WA K + V +AL+ P H
Sbjct: 380 ET-IMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGE--------VEYALKYPWHKSMP 430
Query: 152 RLEARWFIDVYQSGPN--------------TNPILLDLAKLDFNIVQAVHQEDIKYASRW 197
RLEAR +I+ Y GP+ +N L+LAKLDFN VQ++HQ +++ RW
Sbjct: 431 RLEARSYIENY--GPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRW 488
Query: 198 WKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTL 257
WK +G + LNF R+R+ E +F IFEP F CR + T + +DD+YD +G+L
Sbjct: 489 WKSSGFTD-LNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSL 547
Query: 258 DELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAW 317
D+L+LFT++V+RWD + ++Q+P MK+CF +N+ N++A + QG V+ Y++ W
Sbjct: 548 DDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRD-VLGYIQNVW 606
Query: 318 ADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVIL 356
+ Y EA+ Y+P+ EY+ENA +SI+ ++
Sbjct: 607 KVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVV 645
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 168/323 (52%), Gaps = 23/323 (7%)
Query: 43 LYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGD--DCKGMXXXXXXXXXXVE 100
L T AL R LR +GY+ + + F DE G F SS+ + + +
Sbjct: 296 LNTTALGLRTLRMHGYNVS-SDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFP 354
Query: 101 GESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFID 160
E ++ DA F YL+E A + N L + + +E P H RLEAR +ID
Sbjct: 355 DERAM-DDARKFAEPYLREALATKIST---NTKLFKEIEYVVEYPWHMSIPRLEARSYID 410
Query: 161 VYQSG-----------PN-TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLN 208
Y P+ +N L+LAKLDFNIVQ++HQE++K +RWWK++G+ + +N
Sbjct: 411 SYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-IN 469
Query: 209 FARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVE 268
F R R+ E +F + FEP + R T + L DD+ D++ TLDEL+ FT+ V+
Sbjct: 470 FTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVK 527
Query: 269 RWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEA 328
RWDT+ + ++P M+ CF + E+ D ++ QG M +++++K W Y+ E
Sbjct: 528 RWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDM-LAHIRKPWELYFNCYVQER 586
Query: 329 KSYNNGYIPTLQEYMENAWISIS 351
+ GYIPT +EY++ IS+
Sbjct: 587 EWLEAGYIPTFEEYLKTYAISVG 609
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 27/222 (12%)
Query: 46 VALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHGDDC-KGMXXXXXXXXXXVEGESS 104
A+ FR+LRQ+GY + F F E F + GM E
Sbjct: 298 TAMAFRLLRQHGYQVSA-DVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREE- 355
Query: 105 IFRDAISFTTAYLKEWAAKHDNNKHHNEY-----LCTLVNHALELPLHWRTRRLEARWFI 159
I ++A F+ YL E K + + +++ L + ALE+P + R+E R++I
Sbjct: 356 ILKNAKEFSYNYLLE---KREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYI 412
Query: 160 DVYQSGPN--------------TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGE 205
D Y G N N L+LAK D+N QA HQ + +W+++ L E
Sbjct: 413 DQY-GGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSE 471
Query: 206 RLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTI 247
R ++E ++ IFE + R + + L+ I
Sbjct: 472 -WGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAI 512
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 263 FTDAVERW---DTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVIS 311
FTD V R+ + + Q N M H+ N++NE AF+ L +++
Sbjct: 379 FTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILT 430
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 263 FTDAVERW---DTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVIS 311
FTD V R+ + + Q N M H+ N++NE AF+ L +++
Sbjct: 379 FTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILT 430
>pdb|2LSG|A Chain A, Solution Structure Of The Mouse Rev1 C-Terminal Domain
Length = 104
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 236 MSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINE 295
+ T++ ITTI D + L + TD +E D ++ + YMK S+
Sbjct: 21 VKTLLKEWITTISDPME-EDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWN 79
Query: 296 MAFDALRD 303
MAFD + D
Sbjct: 80 MAFDFILD 87
>pdb|2LSK|A Chain A, C-Terminal Domain Of Human Rev1 In Complex With
Dna-Polymerase H (Eta)
pdb|2LSY|A Chain A, Structure Of The C-Terminal Domain From Human Rev1
Length = 95
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 236 MSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINE 295
+ T++ ITTI D + L ++ TD +E D ++ + YMK S+
Sbjct: 12 VKTLLREWITTISDPME-EDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWN 70
Query: 296 MAFDALRD 303
MAFD + D
Sbjct: 71 MAFDFILD 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,680,188
Number of Sequences: 62578
Number of extensions: 429444
Number of successful extensions: 942
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 28
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)