Query 041613
Match_columns 356
No_of_seqs 144 out of 719
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 3E-115 7E-120 903.0 29.7 344 5-355 53-403 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 1E-113 2E-118 917.0 28.8 342 6-354 271-636 (784)
3 PLN02592 ent-copalyl diphospha 100.0 5E-101 1E-105 817.7 28.0 322 6-332 311-675 (800)
4 PF01397 Terpene_synth: Terpen 100.0 8E-46 1.7E-50 336.3 9.8 132 5-142 46-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 9.3E-33 2E-37 258.7 13.4 184 172-355 1-184 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 1.1E-28 2.5E-33 232.6 15.7 169 186-355 1-169 (284)
7 cd00687 Terpene_cyclase_nonpla 99.6 3.2E-15 7E-20 143.7 10.6 157 193-355 18-176 (303)
8 cd00385 Isoprenoid_Biosyn_C1 I 98.9 1.1E-09 2.3E-14 98.0 5.8 121 220-352 2-122 (243)
9 TIGR03486 cas_csx13_C CRISPR-a 56.3 32 0.00069 30.9 5.8 84 257-343 32-125 (152)
10 PF06757 Ins_allergen_rp: Inse 46.5 2.2E+02 0.0048 25.6 10.3 144 156-314 21-176 (179)
11 smart00027 EH Eps15 homology d 40.6 1.6E+02 0.0034 23.3 7.3 85 255-346 4-93 (96)
12 COG4904 Uncharacterized protei 34.4 2.8E+02 0.0061 25.1 8.2 90 233-341 56-148 (174)
13 PF14165 YtzH: YtzH-like prote 30.1 1.6E+02 0.0034 24.2 5.5 49 241-291 8-57 (87)
14 PF08843 DUF1814: Nucleotidyl 29.0 1E+02 0.0022 27.6 4.9 95 228-345 129-233 (233)
15 PF07739 TipAS: TipAS antibiot 27.8 1E+02 0.0023 24.9 4.4 94 253-347 9-114 (118)
16 KOG3951 Uncharacterized conser 26.9 1.2E+02 0.0026 29.8 5.0 44 71-118 264-307 (321)
17 PRK09177 xanthine-guanine phos 26.7 13 0.00029 32.9 -1.3 22 244-265 87-108 (156)
18 PF14164 YqzH: YqzH-like prote 25.7 50 0.0011 25.5 1.8 20 48-68 9-28 (64)
19 COG2976 Uncharacterized protei 24.9 51 0.0011 31.0 2.1 36 188-232 8-43 (207)
20 KOG1914 mRNA cleavage and poly 24.3 6.4E+02 0.014 27.6 10.1 157 182-348 225-409 (656)
21 COG0864 NikR Predicted transcr 22.8 1.1E+02 0.0025 26.8 3.8 37 290-334 16-52 (136)
22 COG2096 cob(I)alamin adenosylt 22.8 2.5E+02 0.0054 26.0 6.2 83 248-337 29-113 (184)
23 cd00867 Trans_IPPS Trans-Isopr 21.9 2.2E+02 0.0048 25.9 5.8 39 309-348 86-124 (236)
24 KOG4025 Putative apoptosis rel 21.7 3.2E+02 0.0069 25.2 6.5 78 226-324 91-169 (207)
25 PF11848 DUF3368: Domain of un 20.9 44 0.00096 23.8 0.7 25 45-70 20-44 (48)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=3.3e-115 Score=903.00 Aligned_cols=344 Identities=49% Similarity=0.793 Sum_probs=333.5
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHHhcCCCCCcccccccccCCCcccc
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFK 77 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~ 77 (356)
...||..||.|+ |||+|||++||+++|++||+++. ..||++|||+|||||||||+||| |||++|||++|+|+
T Consensus 53 ~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~-dvf~~F~~~~g~f~ 131 (542)
T cd00684 53 LFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS-DVFKKFKDEDGKFK 131 (542)
T ss_pred HHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCH-HHHhhhcCCCCCcC
Confidence 346899999998 99999999999999999999864 36999999999999999999999 99999999999999
Q ss_pred cCCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHHHHH
Q 041613 78 SSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARW 157 (356)
Q Consensus 78 ~~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~ 157 (356)
++ +.+||+||||||||||+++||| .|||||++||++||++.++++ +.++++|+++|++||++|||+++||||||+
T Consensus 132 ~~-~~~d~~g~l~Ly~As~l~~~gE-~iLdeA~~ft~~~L~~~~~~~---~~~~~~l~~~V~~aL~~P~~~~~~rlear~ 206 (542)
T cd00684 132 ES-LTQDVKGMLSLYEASHLSFPGE-DILDEALSFTTKHLEEKLESN---WIIDPDLSGEIEYALEIPLHASLPRLEARW 206 (542)
T ss_pred ch-hhhhhHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHHHHHhhcc---CCCCchHHHHHHHHccCchhcCCchHHHHH
Confidence 99 9999999999999999999999 999999999999999998764 346889999999999999999999999999
Q ss_pred hHHHhcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhH
Q 041613 158 FIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMS 237 (356)
Q Consensus 158 yI~~Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~ 237 (356)
||++|++++++|++||||||+|||+||++||+||++++|||+++||.++|||+|+|++|||||++|++|||++|.+|+++
T Consensus 207 yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~ 286 (542)
T cd00684 207 YIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIAL 286 (542)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHH
Q 041613 238 TMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAW 317 (356)
Q Consensus 238 aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w 317 (356)
||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|+++++.+.+|++ ++++++++|
T Consensus 287 aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~-~~~~~~~~~ 365 (542)
T cd00684 287 AKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSY-VVPYLKEAW 365 (542)
T ss_pred HHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 318 ADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 318 ~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
+++++||++||+|+++||+||++|||+|+.+|+|++++
T Consensus 366 ~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~ 403 (542)
T cd00684 366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPL 403 (542)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHH
Confidence 99999999999999999999999999999999998874
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=9.6e-114 Score=917.00 Aligned_cols=342 Identities=30% Similarity=0.458 Sum_probs=324.6
Q ss_pred ccccccccccc-cccccccHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHHhcCCCCCcccccccccCCCccccc
Q 041613 6 PCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKS 78 (356)
Q Consensus 6 ~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~~ 78 (356)
..++..||.|+ |||+|||++||+++|+++|++|. ..|+++|||+|||||||||+||| |||++|+|++ |++
T Consensus 271 fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~-dvf~~F~~~~--F~~ 347 (784)
T PLN02279 271 YARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSS-DPLKQFAEDH--FSD 347 (784)
T ss_pred HHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCCh-hHHhhcCCCc--ccc
Confidence 35677899988 99999999999999999999764 26999999999999999999999 9999999764 988
Q ss_pred CCC---CCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCchHHHHHHHhccCcccCCchhHH
Q 041613 79 SSH---GDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHD-NNKHHNEYLCTLVNHALELPLHWRTRRLE 154 (356)
Q Consensus 79 ~~~---~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~-~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 154 (356)
+ + .+||+||||||||||++|||| .|||||++||++||++.++++. .++.++++|++||+|||++|||+++||||
T Consensus 348 ~-l~~~~~dv~gmL~LY~AS~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlE 425 (784)
T PLN02279 348 S-LGGYLKDTGAVLELFRASQISYPDE-SLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLA 425 (784)
T ss_pred h-hcccchhhHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHH
Confidence 7 5 699999999999999999999 9999999999999999887643 23456788999999999999999999999
Q ss_pred HHHhHHHhcCCCC------------CChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhh
Q 041613 155 ARWFIDVYQSGPN------------TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTV 222 (356)
Q Consensus 155 ar~yI~~Y~~~~~------------~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~ 222 (356)
||+||++|++++. +|++||||||+|||+||++||+||++|+|||+++|| .+|||||||+||||||++
T Consensus 426 aR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aa 504 (784)
T PLN02279 426 NRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAA 504 (784)
T ss_pred HHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHH
Confidence 9999999999885 899999999999999999999999999999999999 699999999999999999
Q ss_pred ccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCch-hhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 041613 223 GVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTT-TIEQLPNYMKLCFHALHNSINEMAFDAL 301 (356)
Q Consensus 223 ~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~-~~~~Lpeymk~~f~al~~~~~ei~~~~~ 301 (356)
|++||||||.+|++|||+++|+|++||+||+|||+|||++||+||||||++ .+++||+|||+||.+|++++||++.++.
T Consensus 505 a~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~ 584 (784)
T PLN02279 505 ATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAF 584 (784)
T ss_pred HhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 5799999999999999999999999999
Q ss_pred HccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhccccc
Q 041613 302 RDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPV 354 (356)
Q Consensus 302 ~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~ 354 (356)
+.||++ +++|++++|++++++|++||||+++||+||++|||+||.+|+|+++
T Consensus 585 ~~qGr~-v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~ 636 (784)
T PLN02279 585 TWQGRN-VTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGP 636 (784)
T ss_pred HHcCch-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHH
Confidence 999999 9999999999999999999999999999999999999999999775
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=4.8e-101 Score=817.67 Aligned_cols=322 Identities=24% Similarity=0.353 Sum_probs=300.8
Q ss_pred ccccccccccc-cccccccHHHHHHHHHHHHhcCC-----------CCchhHHHHHHHHHHhcCCCCCcccccccccCCC
Q 041613 6 PCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT-----------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEK 73 (356)
Q Consensus 6 ~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~-----------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~ 73 (356)
..||..||.|+ |||+|||++||+++|+++|++|. ..|+++|||+|||||||||+||| |||++|++ +
T Consensus 311 fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~-DvF~~F~~-~ 388 (800)
T PLN02592 311 FEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSA-DVFKHFEK-G 388 (800)
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCCh-HHHHhhcC-C
Confidence 35789999988 99999999999999999999532 16999999999999999999999 99999997 8
Q ss_pred cccccCC--CCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcC-CCC-CCCCchHHHHHHHhccCcccCC
Q 041613 74 GSFKSSS--HGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKH-DNN-KHHNEYLCTLVNHALELPLHWR 149 (356)
Q Consensus 74 G~F~~~~--~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~-~~~-~~~~~~L~~eV~~aL~~P~~~~ 149 (356)
|+|++.. ..+|++|||+||||||+++||| .|||+|+.||++||++.+..+ ..+ ++++++|+++|+|||++|||++
T Consensus 389 g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~ 467 (800)
T PLN02592 389 GEFFCFAGQSTQAVTGMFNLYRASQVLFPGE-KILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYAS 467 (800)
T ss_pred CCccccccccccchHHHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcC
Confidence 9998551 3799999999999999999999 999999999999999987532 223 3467889999999999999999
Q ss_pred chhHHHHHhHHHhcCCCCC-------------ChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhh
Q 041613 150 TRRLEARWFIDVYQSGPNT-------------NPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIME 216 (356)
Q Consensus 150 l~Rlear~yI~~Y~~~~~~-------------n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve 216 (356)
+||||||+||++|++++++ |++||||||+|||+||++||+||++++|||+++|| .+|||||||+||
T Consensus 468 l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ve 546 (800)
T PLN02592 468 LPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELLL 546 (800)
T ss_pred cchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHHH
Confidence 9999999999999987764 99999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhh--------hcCchhhhcCch------hH
Q 041613 217 NFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVE--------RWDTTTIEQLPN------YM 282 (356)
Q Consensus 217 ~yfwa~~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ave--------RWD~~~~~~Lpe------ym 282 (356)
||||++|++||||||.+|++|||+++|+|++||+||+|||+|||++||++|+ |||.+++++||+ ||
T Consensus 547 ~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~m 626 (800)
T PLN02592 547 AYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTG 626 (800)
T ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999997 999999999998 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHcc
Q 041613 283 KLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYN 332 (356)
Q Consensus 283 k~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~ 332 (356)
|+||.|||+|+|||+.++.+.||++ +++||+++|.++|++++.|+.|..
T Consensus 627 ki~f~aLy~tineia~~a~~~qGr~-v~~~L~~~W~~l~~~w~~~g~~s~ 675 (800)
T PLN02592 627 EELVGLLLGTLNQLSLDALEAHGRD-ISHLLRHAWEMWLLKWLLEGDGRQ 675 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHHhcCceec
Confidence 9999999999999999999999999 999999999999998888887764
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=8e-46 Score=336.28 Aligned_cols=132 Identities=40% Similarity=0.569 Sum_probs=114.9
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhcCC-C----CchhHHHHHHHHHHhcCCCCCcccccccccCCCccccc
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT-E----KSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKS 78 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~-~----~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~~ 78 (356)
.+.||..||+++ |||+|||++||+++|++||+.+. . .||++|||+|||||||||+||| |||++|+|++|+|+.
T Consensus 46 ~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~-DvF~~F~d~~g~F~~ 124 (183)
T PF01397_consen 46 PLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQHGYYVSS-DVFNKFKDEKGNFKE 124 (183)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHHTT----G-GGGGGGBETTSSBSG
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHHcCCcccH-HHHhCcccCCCccch
Confidence 467999999999 99999999999999999999866 1 4999999999999999999999 999999999999999
Q ss_pred CCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhc
Q 041613 79 SSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHAL 142 (356)
Q Consensus 79 ~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL 142 (356)
+ +.+||+|||+||||||+++||| +|||||+.||++||++.++++. ..+++|+++|+|||
T Consensus 125 ~-l~~Dv~glLsLYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~---~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 125 S-LSNDVKGLLSLYEASHLRFHGE-DILDEARAFTTKHLKSLLSNLS---IPDPHLAKEVKHAL 183 (183)
T ss_dssp G-GGGHHHHHHHHHHHHTT--TT--HHHHHHHHHHHHHHHHHHTTTC---TTSCHHHHHHHHHH
T ss_pred h-hhHhHHHHHHHHHHHHccCCCh-HHHHHHHHHHHHHHHHHhccCC---CCcHHHHHHHHHhC
Confidence 8 9999999999999999999999 9999999999999999987631 12346999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=9.3e-33 Score=258.69 Aligned_cols=184 Identities=32% Similarity=0.436 Sum_probs=173.4
Q ss_pred HHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHHHHHHHHHhhhhhh
Q 041613 172 LLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVY 251 (356)
Q Consensus 172 lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~aK~~~l~tviDD~y 251 (356)
+|+|||+|||+||++||+|++++++||+++|+..+.+.+|+|++.++|+.+++++.|..+..|+++||..+++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999888888999999999999999999998888999999999999999999
Q ss_pred cccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHc
Q 041613 252 DVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSY 331 (356)
Q Consensus 252 D~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~ 331 (356)
|..|+.++++.|+++++|||+.....+|++++.++.++.++++++...+.+.+++..+.+++++.|.+++++++.|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988889999999999999999999999999986543378999999999999999999999
Q ss_pred cCCCCCChHHHHhhhhhhcccccc
Q 041613 332 NNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 332 ~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
.+|++||++||++....|+|++++
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~ 184 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPC 184 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHH
T ss_pred ccCCCCCHHHHHHhccccccccHH
Confidence 999999999999999999998764
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.96 E-value=1.1e-28 Score=232.63 Aligned_cols=169 Identities=50% Similarity=0.934 Sum_probs=162.7
Q ss_pred hhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHH
Q 041613 186 VHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTD 265 (356)
Q Consensus 186 ~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ 265 (356)
.||+|++++++||+++||....+++|.+..++|+|+++++|+|+.+..|+++||.+++++++||.||.+|+.+|+..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999977667999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhh
Q 041613 266 AVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMEN 345 (356)
Q Consensus 266 aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n 345 (356)
+++||+....+.+|++++.++.+++++.++++..+.+.+|.. ....+++.|..+++++..||+|..+|++||++||+++
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~ 159 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSE-SLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLEN 159 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Confidence 999999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred hhhhcccccc
Q 041613 346 AWISISAPVI 355 (356)
Q Consensus 346 ~~iS~~~~~~ 355 (356)
...|+|.++.
T Consensus 160 R~~~~g~~~~ 169 (284)
T cd00868 160 RRVSIGYPPL 169 (284)
T ss_pred ceehhhHHHH
Confidence 9999987653
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.60 E-value=3.2e-15 Score=143.65 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=133.1
Q ss_pred HHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHH-HHHHHHHhhhhhhccc-CCHHHHHHHHHHhhhc
Q 041613 193 YASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMST-MVNALITTIDDVYDVY-GTLDELELFTDAVERW 270 (356)
Q Consensus 193 ~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~a-K~~~l~tviDD~yD~y-gTleEl~~ft~aveRW 270 (356)
+...|.++.|+ -.=+.+|+|.++++|+.++.++.|+.+..|+.++ +..+++.++||.||.. +|.+++..+++.+.++
T Consensus 18 ~~~~w~~~~~l-~~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEML-IPSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCC-CCcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhc
Confidence 36679888866 2345899999999999999999999999999665 9999999999999998 5999999999888887
Q ss_pred CchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhc
Q 041613 271 DTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISI 350 (356)
Q Consensus 271 D~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~ 350 (356)
.......-|.....+..++.++...+...+. .. ....+++.|.+++.+++.|++|+.+|++||++||+++...|+
T Consensus 97 ~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~----~~-~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~ 171 (303)
T cd00687 97 LRGDGLDSPDDATPLEFGLADLWRRTLARMS----AE-WFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNI 171 (303)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhccCCC----HH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcc
Confidence 6543211157888888899988888776543 33 468889999999999999999999999999999999999999
Q ss_pred ccccc
Q 041613 351 SAPVI 355 (356)
Q Consensus 351 ~~~~~ 355 (356)
|.+++
T Consensus 172 g~~~~ 176 (303)
T cd00687 172 GADPC 176 (303)
T ss_pred ccccc
Confidence 98764
No 8
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=98.94 E-value=1.1e-09 Score=98.00 Aligned_cols=121 Identities=26% Similarity=0.316 Sum_probs=103.3
Q ss_pred HhhccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHH
Q 041613 220 WTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFD 299 (356)
Q Consensus 220 wa~~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~ 299 (356)
++++++++|+.+..|.+++++.+++.++||++|..++..+.......+ .....|.++...+..+.+.+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 577889999999999999999999999999999999888877666554 33557888888899999988888764
Q ss_pred HHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhccc
Q 041613 300 ALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISA 352 (356)
Q Consensus 300 ~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~ 352 (356)
.. .. ....+++.|.+++.++..|+.|..+ ++||++||++....++|.
T Consensus 76 ~~----~~-~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~~ 122 (243)
T cd00385 76 GS----PE-ALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTAG 122 (243)
T ss_pred CC----HH-HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHH
Confidence 33 34 6889999999999999999999977 899999999998887643
No 9
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=56.31 E-value=32 Score=30.89 Aligned_cols=84 Identities=25% Similarity=0.329 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHcc--Ccch-hHHHHHHHHHHHHHHHHHH------
Q 041613 257 LDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQ--GVGM-VISYLKKAWADICKTYLVE------ 327 (356)
Q Consensus 257 leEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~--g~~~-~~~~l~~~w~~l~~a~l~E------ 327 (356)
-+.|...++.++.||..+ ++ =-++.|=.|+-.++..|.....+.+ +... +-.--.+.-..+.+++-.|
T Consensus 32 r~gL~~M~~~~~~~~~e~-eq--~fiqa~HeAlr~~~~qI~~~tk~~g~~~~~~~~e~e~erir~~l~r~kt~~~fr~~i 108 (152)
T TIGR03486 32 RDELNKMIENSEIWDSEA-EQ--WFVQSFHEALRRIYAKIASHTKRRGSETLGDRWKRENERIYSSLARAKTSEQFRTFI 108 (152)
T ss_pred HHhHHHHHHHHHhcccHH-HH--HHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 345777888888897432 11 1234455555555555555555432 1110 1111111222233332222
Q ss_pred Hh-HccCCCCCChHHHH
Q 041613 328 AK-SYNNGYIPTLQEYM 343 (356)
Q Consensus 328 Ak-W~~~~~~Pt~eEYl 343 (356)
++ |...|..||++|+-
T Consensus 109 ~df~srAg~~~~Lqe~~ 125 (152)
T TIGR03486 109 ADLWARAGRIPSLQEHW 125 (152)
T ss_pred HHHHHHccCCcchHHHH
Confidence 22 78899999998874
No 10
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=46.48 E-value=2.2e+02 Score=25.56 Aligned_cols=144 Identities=17% Similarity=0.287 Sum_probs=83.1
Q ss_pred HHhHHHh-cCCCCCChHHHHHHhhchHHH--HHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccc-cCCC-c
Q 041613 156 RWFIDVY-QSGPNTNPILLDLAKLDFNIV--QAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVI-FEPN-F 230 (356)
Q Consensus 156 r~yI~~Y-~~~~~~n~~lLeLAKlDFn~~--Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~-fEP~-~ 230 (356)
+.-+..| ..|+.--..+--+..-+|.-+ |..-+.|.+.+..|.++.|+ ...+.=+++... .++. +.|. .
T Consensus 21 ~~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~~l~~yL~~~gl--dv~~~i~~i~~~----l~~~~~~p~~~ 94 (179)
T PF06757_consen 21 QDIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVKALLDYLESAGL--DVYYYINQINDL----LGLPPLNPTPS 94 (179)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHHHHHHHHHHCCC--CHHHHHHHHHHH----HcCCcCCCCcc
Confidence 3333334 444444444445555566644 56668999999999999998 334444444443 2332 2221 1
Q ss_pred cchhhhHHHHHHHHHhhhhhhcccCCHHHHHH-HHHHhhhcCc---hhhhcC-chhHHHHHHHHHH--HHHHHHHHHHHc
Q 041613 231 GYCRRMSTMVNALITTIDDVYDVYGTLDELEL-FTDAVERWDT---TTIEQL-PNYMKLCFHALHN--SINEMAFDALRD 303 (356)
Q Consensus 231 s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~-ft~aveRWD~---~~~~~L-peymk~~f~al~~--~~~ei~~~~~~~ 303 (356)
..+. +...+.+.++|+.+..- .+++.. |.+-++. +. ..++.+ ++..+-++.++++ .+..+..++.+
T Consensus 95 ~~~~----~~~g~~g~~~di~~~lP-~~~l~aL~~~K~~~-s~~F~~f~~~l~S~ef~~~~~~~~~~~~~~~~~~~L~~- 167 (179)
T PF06757_consen 95 LSCS----RGGGLNGFVDDILALLP-RDKLRALYEEKLAT-SPEFAEFVEALRSPEFQQLYNALWASPEFQRLLNELRE- 167 (179)
T ss_pred cccc----cCCCHHHHHHHHHHHCC-HHHHHHHHHHHHHC-CHHHHHHHHHHcCHHHHHHHHHHHcCHHHHHHHHHHHH-
Confidence 1111 66678899999988775 455543 4444443 32 234444 4566777777776 47777776654
Q ss_pred cCcchhHHHHH
Q 041613 304 QGVGMVISYLK 314 (356)
Q Consensus 304 ~g~~~~~~~l~ 314 (356)
.|.+ ++++.
T Consensus 168 ~Gvd--v~~l~ 176 (179)
T PF06757_consen 168 NGVD--VDYLL 176 (179)
T ss_pred cCCC--HHHHH
Confidence 6777 44443
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=40.56 E-value=1.6e+02 Score=23.34 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHhhhcCchhhhcCc-hhHHHHHHHHH---HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhH
Q 041613 255 GTLDELELFTDAVERWDTTTIEQLP-NYMKLCFHALH---NSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKS 330 (356)
Q Consensus 255 gTleEl~~ft~aveRWD~~~~~~Lp-eymk~~f~al~---~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW 330 (356)
=|.+|+..+.++++..|.+.-..++ +.++.++..+- ..++++-..+...+... +. ..+.+..+..-++|
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~--I~-----~~eF~~~~~~~~~~ 76 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGE--LD-----KDEFALAMHLIYRK 76 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC--cC-----HHHHHHHHHHHHHH
Confidence 3566777777777777765444443 34555554431 11222222222222222 22 45667777778899
Q ss_pred ccCCCCC-ChHHHHhhh
Q 041613 331 YNNGYIP-TLQEYMENA 346 (356)
Q Consensus 331 ~~~~~~P-t~eEYl~n~ 346 (356)
..+.-+| .+.-||.+.
T Consensus 77 ~~g~~~~~~~~~~~~~~ 93 (96)
T smart00027 77 LNGYPIPASLPPSLIPP 93 (96)
T ss_pred HcCCCCCccCCHhhcCC
Confidence 8877787 777777654
No 12
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.44 E-value=2.8e+02 Score=25.09 Aligned_cols=90 Identities=26% Similarity=0.431 Sum_probs=51.7
Q ss_pred hhhhHHHHHHH--HHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCc-hhHHHHHHHHHHHHHHHHHHHHHccCcchh
Q 041613 233 CRRMSTMVNAL--ITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLP-NYMKLCFHALHNSINEMAFDALRDQGVGMV 309 (356)
Q Consensus 233 ~R~~~aK~~~l--~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lp-eymk~~f~al~~~~~ei~~~~~~~~g~~~~ 309 (356)
||.-++|...+ -.++-|+|..|| .++- .|| +++-+-.-.+-....+-+..+.+..... +
T Consensus 56 ~~kDl~k~~~~v~~k~~~~FYEnyG----------------f~A~-elp~Dhlav~lAFms~l~r~~~~~~~~~~~EE-~ 117 (174)
T COG4904 56 CRKDLTKAAKLVWRKTVEAFYENYG----------------FSAG-ELPPDHLAVQLAFMSSLLREAAMALARDDREE-V 117 (174)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHcC----------------CCcC-CCChhHHHHHHHHHHHHHHHHHHHHhhhhHHH-H
Confidence 66666776544 468899999999 2333 354 7765544444455554444333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHccCCCCCChHH
Q 041613 310 ISYLKKAWADICKTYLVEAKSYNNGYIPTLQE 341 (356)
Q Consensus 310 ~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eE 341 (356)
+.+ +++-.+.+++-|.=.-=.+.+..|.+.+
T Consensus 118 ~k~-~~~q~RF~~aHL~Pt~k~~~~~~pll~~ 148 (174)
T COG4904 118 VKY-LKLQSRFASAHLIPTAKGTNGFTPLLTE 148 (174)
T ss_pred HHH-HHHHHHHHHHhhhhhhhcccccChHHHH
Confidence 333 3456667777776544346777776543
No 13
>PF14165 YtzH: YtzH-like protein
Probab=30.10 E-value=1.6e+02 Score=24.17 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=31.4
Q ss_pred HHHHHhhhhh-hcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHH
Q 041613 241 NALITTIDDV-YDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHN 291 (356)
Q Consensus 241 ~~l~tviDD~-yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~ 291 (356)
..|--|+++- -|.+||..|++-+...|+. .-+-..++..+|.+..-+|+
T Consensus 8 ~LLkDIL~~hq~DccgTvsEcEQieRLvks--Lm~n~~i~~~ik~~L~~Iy~ 57 (87)
T PF14165_consen 8 TLLKDILSNHQLDCCGTVSECEQIERLVKS--LMANPNIDADIKQTLEEIYS 57 (87)
T ss_pred HHHHHHHHhhhhhccCcHHHHHHHHHHHHH--HHcCCCcCHHHHHHHHHHHH
Confidence 3333344443 5789999999998888876 33444567777665554443
No 14
>PF08843 DUF1814: Nucleotidyl transferase of unknown function (DUF1814); InterPro: IPR014942 This large group of proteins are largely uncharacterised. Some are annotated as abortive infective proteins but support for this annotation could not be found.
Probab=28.97 E-value=1e+02 Score=27.56 Aligned_cols=95 Identities=15% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCccchhhhHHHHHHHHH---------hhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHH
Q 041613 228 PNFGYCRRMSTMVNALIT---------TIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAF 298 (356)
Q Consensus 228 P~~s~~R~~~aK~~~l~t---------viDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~ 298 (356)
|-++...++..|+.++.. -.-|+||.+- +.+. +...+.....+..++...+..-..
T Consensus 129 ~v~s~~~~~a~Kl~a~~~r~~~~~~~~r~RDl~Dl~~-------L~~~--------~~~~~~~~~~l~~~~~~~~~~~~~ 193 (233)
T PF08843_consen 129 PVYSLEEILAEKLHALLDRSEGDPPRRRARDLYDLYY-------LAQP--------ISRDELDLEELREAFLAKFDRRGR 193 (233)
T ss_pred eeCCHHHHHHHHHHHHHhcccccccccCCCCHHHHHH-------HHhh--------ccccccCHHHHHHHHHHHHHhccc
Confidence 778899999999999887 2378888752 1111 122222333344444333333211
Q ss_pred HHHHccCcchhHHHH-HHHHHHHHHHHHHHHhHccCCCCCChHHHHhh
Q 041613 299 DALRDQGVGMVISYL-KKAWADICKTYLVEAKSYNNGYIPTLQEYMEN 345 (356)
Q Consensus 299 ~~~~~~g~~~~~~~l-~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n 345 (356)
..... .... ++.|.....++..-..+ .+..|+++++++|
T Consensus 194 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~~~ 233 (233)
T PF08843_consen 194 ELLPR------LLFLQREFWQRDYEAMRDALLY--AGDLPDFDDALAR 233 (233)
T ss_pred ccccc------cccccHHHHHHHHHHhHhhhhc--cCCCcCHHHHhcC
Confidence 11111 1111 57777777777755443 6789999999875
No 15
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=27.81 E-value=1e+02 Score=24.91 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=37.3
Q ss_pred ccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHH-------HHHHHHHccCcch--hHHHHHHHHHHHHHH
Q 041613 253 VYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINE-------MAFDALRDQGVGM--VISYLKKAWADICKT 323 (356)
Q Consensus 253 ~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~e-------i~~~~~~~~g~~~--~~~~l~~~w~~l~~a 323 (356)
.||+ +......+-...|.......+-..+.-++..|-..+++ -+.++.++....+ ..+.-.+....|.+.
T Consensus 9 ~yg~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (118)
T PF07739_consen 9 RYGD-EAYAESEERLASLSKEEWQELQKEWDELFAELAALMEEGVDPDSPEVQELAERWMELINQFTGGDPELLRGLAQM 87 (118)
T ss_dssp H------------------------TTHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHHHSS---HHHHHHHHHH
T ss_pred HHCh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4565 44433333334444455555555566666655554443 0111111110000 111222455666677
Q ss_pred HHHHHhHcc--C-CCCCChHHHHhhhh
Q 041613 324 YLVEAKSYN--N-GYIPTLQEYMENAW 347 (356)
Q Consensus 324 ~l~EAkW~~--~-~~~Pt~eEYl~n~~ 347 (356)
|..+..|.. . ++.|-+-+||.-|.
T Consensus 88 y~~~~~~~~~~~~~~~~~~~~fi~~Ai 114 (118)
T PF07739_consen 88 YVEDPRFAAMYDKKFGPGLAEFIEKAI 114 (118)
T ss_dssp TTSTHHHHHHHG-GGSTTHHHHHHHHH
T ss_pred HHcCHHHHhhccccCCHHHHHHHHHHH
Confidence 777778876 4 88899999998774
No 16
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.93 E-value=1.2e+02 Score=29.76 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=33.3
Q ss_pred CCCcccccCCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHH
Q 041613 71 DEKGSFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLK 118 (356)
Q Consensus 71 d~~G~F~~~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~ 118 (356)
+.+|-|-.. ..-|+||-..|-.+-- |.-++=|=.|..||++||.
T Consensus 264 hp~GAFv~~-s~iDmkgcvrllk~q~---p~~~e~LLnaLRfTTKHlN 307 (321)
T KOG3951|consen 264 HPNGAFVSN-SSIDMKGCVRLLKLQP---PEQSECLLNALRFTTKHLN 307 (321)
T ss_pred ccccccccc-CcCcHHHHHHHHHcCC---chhhHHHHHHHHHHHhhcC
Confidence 467888666 6789999998887653 4444557789999999983
No 17
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=26.66 E-value=13 Score=32.91 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHhhhhhhcccCCHHHHHHHHH
Q 041613 244 ITTIDDVYDVYGTLDELELFTD 265 (356)
Q Consensus 244 ~tviDD~yD~ygTleEl~~ft~ 265 (356)
+.++||+.|.++|+.++..+..
T Consensus 87 VLIVDDIiDTG~Tl~~v~~~l~ 108 (156)
T PRK09177 87 FLVVDDLVDTGGTARAVREMYP 108 (156)
T ss_pred EEEEeeeeCCHHHHHHHHHHHh
Confidence 4689999999999999987654
No 18
>PF14164 YqzH: YqzH-like protein
Probab=25.66 E-value=50 Score=25.47 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCCCccccccc
Q 041613 48 LKFRILRQYGYDTPVKETFSC 68 (356)
Q Consensus 48 L~FRLLR~hGy~VSs~DvF~~ 68 (356)
|.=+-|||.||++++ +.+..
T Consensus 9 mi~~~l~QYg~d~~~-~pls~ 28 (64)
T PF14164_consen 9 MIINCLRQYGYDVEC-MPLSD 28 (64)
T ss_pred HHHHHHHHhCCcccC-CCCCH
Confidence 344679999999999 77665
No 19
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.93 E-value=51 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.522 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccc
Q 041613 188 QEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGY 232 (356)
Q Consensus 188 q~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~ 232 (356)
|+|+..|.+||++.|-. ++-....++|.+|.=+|-.
T Consensus 8 ~qql~~ik~wwkeNGk~---------li~gviLg~~~lfGW~ywq 43 (207)
T COG2976 8 QQQLEAIKDWWKENGKA---------LIVGVILGLGGLFGWRYWQ 43 (207)
T ss_pred HHHHHHHHHHHHHCCch---------hHHHHHHHHHHHHHHHHHH
Confidence 78999999999999952 3444555666666554433
No 20
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=24.31 E-value=6.4e+02 Score=27.58 Aligned_cols=157 Identities=16% Similarity=0.299 Sum_probs=95.4
Q ss_pred HHHHhhHhHHHHHHHH--HHH----cCCCcCCc--ccccchhhHHHHhh-ccccCCCccchhhhHHHHHHHHHhhhhhhc
Q 041613 182 IVQAVHQEDIKYASRW--WKK----TGLGERLN--FARDRIMENFFWTV-GVIFEPNFGYCRRMSTMVNALITTIDDVYD 252 (356)
Q Consensus 182 ~~Q~~hq~EL~~lsrW--w~e----~~l~~~l~--faRdr~ve~yfwa~-~~~fEP~~s~~R~~~aK~~~l~tviDD~yD 252 (356)
+=|.--..|.+++++| |-+ .+| ..+. ---.|++.+|=-++ .+.|-|+ +|=-.+..+.-+-|+++
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL-~t~~~~~~~~Rv~yayeQ~ll~l~~~pe------iWy~~s~yl~~~s~l~~ 297 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPL-RTLDGTMLTRRVMYAYEQCLLYLGYHPE------IWYDYSMYLIEISDLLT 297 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCc-ccccccHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHhhHHHH
Confidence 4455556789999999 544 333 2222 22347777774433 3345554 77778888888899999
Q ss_pred ccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHH------------HHHHHHHHHHHccCcch------hHHHHH
Q 041613 253 VYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHN------------SINEMAFDALRDQGVGM------VISYLK 314 (356)
Q Consensus 253 ~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~------------~~~ei~~~~~~~~g~~~------~~~~l~ 314 (356)
.+|..++-..||+-...-=+.+++.+...-+.+|-++-+ -+.++.+++.+....+. .+++++
T Consensus 298 ~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir 377 (656)
T KOG1914|consen 298 EKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR 377 (656)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH
Confidence 999999999998765543334666666656666665532 23344444544443210 123333
Q ss_pred H-HHHHHHHHHHHHHhHccCCCCCChHHHHhhhhh
Q 041613 315 K-AWADICKTYLVEAKSYNNGYIPTLQEYMENAWI 348 (356)
Q Consensus 315 ~-~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~i 348 (356)
+ .=.+.+|+-+.+|+ ..+..| -+-|+.+|.+
T Consensus 378 R~eGlkaaR~iF~kaR--~~~r~~-hhVfVa~A~m 409 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAR--EDKRTR-HHVFVAAALM 409 (656)
T ss_pred HhhhHHHHHHHHHHHh--hccCCc-chhhHHHHHH
Confidence 2 23456777777776 567777 5777776654
No 21
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=22.84 E-value=1.1e+02 Score=26.83 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCC
Q 041613 290 HNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNG 334 (356)
Q Consensus 290 ~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~ 334 (356)
++.++++.. +.+..+ .- +...+.++.|++|.+|.+..
T Consensus 16 l~elD~~i~---~rg~~s-RS----E~IrdAir~yl~e~~~~~~~ 52 (136)
T COG0864 16 LEELDELIE---ERGYSS-RS----ELIRDALREYLEEYRWLEDI 52 (136)
T ss_pred HHHHHHHHH---HcCCCc-HH----HHHHHHHHHHHHHhhhhccc
Confidence 555555544 334333 33 55677799999999998765
No 22
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=22.80 E-value=2.5e+02 Score=26.03 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=42.2
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHcc--CcchhHHHHHHHHHHHHHHHH
Q 041613 248 DDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQ--GVGMVISYLKKAWADICKTYL 325 (356)
Q Consensus 248 DD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~--g~~~~~~~l~~~w~~l~~a~l 325 (356)
|..-..|||+||+..|+-...- ..-|+.++-+...+.+-+=.++.++.... +.. +..--.+-....+.+|.
T Consensus 29 ~~rVeayGtlDElNs~IG~A~~------~~~~~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~-i~~e~v~~LE~~id~y~ 101 (184)
T COG2096 29 SPRVEAYGTLDELNSFIGLARA------LLKDEDIRAILRRIQNDLFDLGADLATPEEKPLR-ITEEDVKRLEKRIDAYN 101 (184)
T ss_pred CceeeeeccHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHHHhhhhhcCCCccccc-cCHHHHHHHHHHHHHHH
Confidence 3445789999999988765432 11114455444444444444444433322 223 33333444555666666
Q ss_pred HHHhHccCCCCC
Q 041613 326 VEAKSYNNGYIP 337 (356)
Q Consensus 326 ~EAkW~~~~~~P 337 (356)
.|..=.++--+|
T Consensus 102 ~~l~~l~~FiLP 113 (184)
T COG2096 102 AELPPLKSFVLP 113 (184)
T ss_pred hcCCCcceeecc
Confidence 655433333333
No 23
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=21.90 E-value=2.2e+02 Score=25.88 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhh
Q 041613 309 VISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWI 348 (356)
Q Consensus 309 ~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~i 348 (356)
+.....+...+++.+...+..|..+ ..||.++|++...-
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~ 124 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRY 124 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHh
Confidence 4566778899999999999999754 57999999988765
No 24
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=21.75 E-value=3.2e+02 Score=25.22 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=49.5
Q ss_pred cCCCccc-hhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHcc
Q 041613 226 FEPNFGY-CRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQ 304 (356)
Q Consensus 226 fEP~~s~-~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~ 304 (356)
+||.|-. .|.+.|=-.+|.-|=|.+=|.+.=++-.+...-||+ .|++++|++...+. -+
T Consensus 91 ~E~~fqeLn~ka~aLk~iLSriPdEinDR~~FLeTIK~IASaIK-------------------kLLd~vN~v~~~~p-~t 150 (207)
T KOG4025|consen 91 YEQDFQELNKKAIALKRILSRIPDEINDRHAFLETIKLIASAIK-------------------KLLDAVNAVYRIVP-LT 150 (207)
T ss_pred CCccHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhcc-cc
Confidence 6777654 345555445566677888777765555555444443 46888888877666 45
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 041613 305 GVGMVISYLKKAWADICKTY 324 (356)
Q Consensus 305 g~~~~~~~l~~~w~~l~~a~ 324 (356)
++. .+.+=|+.+....+.|
T Consensus 151 ~~~-AvE~rKkEFVkYSK~F 169 (207)
T KOG4025|consen 151 AQP-AVEKRKKEFVKYSKRF 169 (207)
T ss_pred ccH-HHHHHHHHHHHHHHHH
Confidence 555 5677777776666554
No 25
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.94 E-value=44 Score=23.76 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCCCccccccccc
Q 041613 45 TVALKFRILRQYGYDTPVKETFSCFM 70 (356)
Q Consensus 45 ~~AL~FRLLR~hGy~VSs~DvF~~Fk 70 (356)
.+.=.+--|+++|+++|+ ++++.+.
T Consensus 20 ~~~~~l~~l~~~g~~is~-~l~~~~L 44 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISP-KLIEEIL 44 (48)
T ss_pred hHHHHHHHHHHcCcccCH-HHHHHHH
Confidence 333445566999999999 8887764
Done!