Query 041613
Match_columns 356
No_of_seqs 144 out of 719
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 15:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n0f_A Isoprene synthase; terp 100.0 2E-125 5E-130 978.2 27.7 342 5-355 64-411 (555)
2 3m00_A Aristolochene synthase; 100.0 4E-125 1E-129 973.7 29.2 341 5-355 66-409 (550)
3 3g4d_A (+)-delta-cadinene synt 100.0 9E-125 3E-129 971.7 28.7 341 5-355 70-413 (554)
4 2ong_A 4S-limonene synthase; m 100.0 1E-119 4E-124 934.6 30.3 343 5-355 50-402 (543)
5 2j5c_A 1,8-cineole synthase; t 100.0 5E-119 2E-123 934.1 26.1 342 5-355 83-429 (569)
6 1n1b_A (+)-bornyl diphosphate 100.0 1E-118 5E-123 927.4 27.6 345 5-355 54-408 (549)
7 3s9v_A Abietadiene synthase, c 100.0 9E-117 3E-121 943.2 34.1 346 6-355 271-644 (785)
8 3sdr_A Alpha-bisabolene syntha 100.0 1E-116 4E-121 945.2 30.1 345 6-354 299-671 (817)
9 3p5p_A Taxadiene synthase; cla 100.0 4E-116 1E-120 935.7 33.1 341 6-355 247-613 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 5E-102 2E-106 821.8 28.4 318 5-329 245-605 (727)
11 1ps1_A Pentalenene synthase; a 100.0 4.1E-33 1.4E-37 269.3 7.9 162 185-355 16-182 (337)
12 1di1_A Aristolochene synthase; 100.0 3.2E-32 1.1E-36 258.4 9.8 156 186-355 13-170 (300)
13 3bny_A Aristolochene synthase; 100.0 1.9E-31 6.6E-36 255.9 9.8 157 185-355 26-184 (320)
14 3kb9_A EPI-isozizaene synthase 99.9 9.2E-27 3.2E-31 230.7 6.7 156 193-355 65-224 (382)
15 3v1v_A 2-MIB synthase, 2-methy 99.2 8.3E-11 2.8E-15 118.6 12.2 153 193-353 134-299 (433)
16 1yyq_A Trichodiene synthase; t 92.9 0.21 7.1E-06 49.2 7.5 122 212-351 64-186 (374)
17 4dhi_B Ubiquitin thioesterase 44.0 89 0.003 29.4 8.7 93 256-351 104-210 (284)
18 3fx7_A Putative uncharacterize 26.8 2.3E+02 0.008 22.3 8.3 68 253-326 4-88 (94)
19 2zfy_A Ubiquitin thioesterase 22.1 2.6E+02 0.009 25.0 7.8 90 256-349 70-173 (234)
20 3t72_q RNA polymerase sigma fa 21.3 1.7E+02 0.006 22.6 5.6 47 273-321 15-68 (99)
21 1tff_A Ubiquitin thiolesterase 20.6 3E+02 0.01 24.7 7.8 90 256-350 67-171 (234)
22 2ki0_A DS119; beta-alpha-beta, 20.0 75 0.0026 20.2 2.5 17 253-269 10-26 (36)
No 1
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.6e-125 Score=978.17 Aligned_cols=342 Identities=48% Similarity=0.860 Sum_probs=331.1
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHHHhcCCCCCcccccccccCCCccccc
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNK-----NTEKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKS 78 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~-----~~~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~~ 78 (356)
...||..||.|+ |||+|||++||+++|++||+. +...||++|||+|||||||||+||| |||++|+|++|+|++
T Consensus 64 ~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~hGy~VS~-dvF~~F~d~~G~F~~ 142 (555)
T 3n0f_A 64 FLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ-EAFSGFKDQNGNFLE 142 (555)
T ss_dssp HHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSCBCG
T ss_pred HHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHhcCCCcCh-HHHhcccccCccchh
Confidence 357899999999 999999999999999999984 3457999999999999999999999 999999999999999
Q ss_pred CCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHHHHHh
Q 041613 79 SSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWF 158 (356)
Q Consensus 79 ~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~y 158 (356)
+ +.+||+||||||||||+++||| +|||+|++||++||++.+..+ ++++|+++|+|||++|||+++||||||+|
T Consensus 143 ~-l~~dv~glL~LYeAs~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~-----~~~~l~~~V~~aL~~P~~~~l~Rlear~y 215 (555)
T 3n0f_A 143 N-LKEDTKAILSLYEASFLALEGE-NILDEARVFAISHLKELSEEK-----IGKELAEQVNHALELPLHRRTQRLEAVWS 215 (555)
T ss_dssp G-GGGCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHTCCHHH-----HCHHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred h-hhhhhHHHHHHHHHHhcccCCc-HHHHHHHHHHHHHHHHHHhcc-----CCchHHHHHHHHhcCCcccCchHHHHHHH
Confidence 9 9999999999999999999999 999999999999999876531 67889999999999999999999999999
Q ss_pred HHHhcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHH
Q 041613 159 IDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMST 238 (356)
Q Consensus 159 I~~Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~a 238 (356)
|++|++++++|++||||||||||+||++||+||++|+||||++||+++|||||||+||||||++|++||||||.+|++||
T Consensus 216 I~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~a 295 (555)
T 3n0f_A 216 IEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVA 295 (555)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHH
T ss_pred HHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHH
Q 041613 239 MVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWA 318 (356)
Q Consensus 239 K~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~ 318 (356)
|+++|+|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|++++||+++++.++||++ +++|++++|+
T Consensus 296 K~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~-~~~~l~~~w~ 374 (555)
T 3n0f_A 296 KMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN-ILPYLTKAWA 374 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 319 DICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 319 ~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
++|+||++||||+++||+||+||||+||++|+|++++
T Consensus 375 ~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l 411 (555)
T 3n0f_A 375 DLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQ 411 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHH
Confidence 9999999999999999999999999999999998865
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=4.1e-125 Score=973.71 Aligned_cols=341 Identities=36% Similarity=0.638 Sum_probs=331.6
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHhcCCCCCcccccccccCCCcccccCCCC
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT-EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSHG 82 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~-~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~~~~~~ 82 (356)
...||..||.|+ |||+|||++||+++|++||+++. +.||++|||+|||||||||+||| |||++|||++|+|+++ +.
T Consensus 66 ~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~dl~~~al~FRLLR~hGy~VS~-dvf~~F~~~~G~F~~~-l~ 143 (550)
T 3m00_A 66 LADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISP-EIFSKFQDENGKFKES-LA 143 (550)
T ss_dssp HHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSCBCGG-GG
T ss_pred HHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCCCCh-HHhhhccccCCCcccc-ch
Confidence 357899999999 99999999999999999999876 57999999999999999999999 9999999999999999 99
Q ss_pred CchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHHHHHhHH-H
Q 041613 83 DDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFID-V 161 (356)
Q Consensus 83 ~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~-~ 161 (356)
+||+||||||||||+++||| .|||+|++||++||++.+++ .+++|+++|+|||++|||+++||||||+||+ +
T Consensus 144 ~d~~glL~LYeAs~l~~~gE-~iLdeA~~fs~~~L~~~~~~------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~ 216 (550)
T 3m00_A 144 SDVLGLLNLYEASHVRTHAD-DILEDALAFSTIHLESAAPH------LKSPLREQVTHALEQCLHKGVPRVETRFFISSI 216 (550)
T ss_dssp GCHHHHHHHHHHHTTCCTTC-GGGTTHHHHHHHHHHHHGGG------CCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHT
T ss_pred hchHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHhc------cCccHHHHHHHHhCCCccCCchHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999998865 5778999999999999999999999999999 9
Q ss_pred hcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHHHHH
Q 041613 162 YQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVN 241 (356)
Q Consensus 162 Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~aK~~ 241 (356)
|++++++|++||||||+|||+||++||+||++++||||++||+++|||||||+||||||++|++||||||.+|+++||++
T Consensus 217 Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~ 296 (550)
T 3m00_A 217 YDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTI 296 (550)
T ss_dssp GGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHH
Q 041613 242 ALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADIC 321 (356)
Q Consensus 242 ~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~ 321 (356)
+|+|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+++++|+++++.++||++ +++|++++|+++|
T Consensus 297 ~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~-~~~ylk~~w~~l~ 375 (550)
T 3m00_A 297 SMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH-IVCHAIERMKEIV 375 (550)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc-cHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888888 9999999999999
Q ss_pred HHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 322 KTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 322 ~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
+||++||||+++||+||+||||+||++|+|++++
T Consensus 376 ~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l 409 (550)
T 3m00_A 376 RNYNVESTWFIEGYTPPVSEYLSNALATTTYYLL 409 (550)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHhccccchHHHH
Confidence 9999999999999999999999999999998764
No 3
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=9.5e-125 Score=971.70 Aligned_cols=341 Identities=38% Similarity=0.650 Sum_probs=330.2
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHHhcCCCCCcccccccccCCCcccccCCC
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKN-T-EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKGSFKSSSH 81 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~-~-~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G~F~~~~~ 81 (356)
...||..||.|+ |||+|||++||+++|++||++. . +.||++|||+|||||||||+||| |||++|+|++|+|+++ +
T Consensus 70 ~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~-dvf~~F~~~~g~F~~~-l 147 (554)
T 3g4d_A 70 STQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSC-DVFNKFKDEQGNFKSS-V 147 (554)
T ss_dssp HHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSSBCHH-H
T ss_pred HHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCCh-hHHhhhcccCCCcccc-c
Confidence 357899999999 9999999999999999999852 2 36999999999999999999999 9999999999999998 8
Q ss_pred CCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHHHHHhHHH
Q 041613 82 GDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFIDV 161 (356)
Q Consensus 82 ~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~ 161 (356)
.+||+||||||||||+++||| .|||+|++||++||++.+++ ++++|+++|+|||++|||+++||||||+||++
T Consensus 148 ~~d~~glL~LYeAs~l~~~gE-~iLdeA~~fs~~~L~~~~~~------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~ 220 (554)
T 3g4d_A 148 TSDVRGLLELYQASYLRVHGE-DILDEAISFTTHHLSLAVAS------LDHPLSEEVSHALKQSIRRGLPRVEARHYLSV 220 (554)
T ss_dssp HHCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHSTT------CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHhc------cCchHHHHHHHHhCCCccCCchHHHHHHHHHH
Confidence 999999999999999999999 99999999999999998765 67889999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHHHHH
Q 041613 162 YQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTMVN 241 (356)
Q Consensus 162 Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~aK~~ 241 (356)
|++++++|++||||||+|||+||++||+||++++||||++||+++|||||||+||||||++|++||||||.+|+++||++
T Consensus 221 Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~ 300 (554)
T 3g4d_A 221 YQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVI 300 (554)
T ss_dssp HHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHH
T ss_pred hCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHH
Q 041613 242 ALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADIC 321 (356)
Q Consensus 242 ~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~ 321 (356)
+|+|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|++++|||++++.++||.+ +++|++++|+++|
T Consensus 301 ~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~-~~~ylk~~w~~l~ 379 (554)
T 3g4d_A 301 AMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQY-RVEYAKNAMIRLA 379 (554)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888888 9999999999999
Q ss_pred HHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 322 KTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 322 ~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
+||++||||+++||+||+||||+||++|+|++++
T Consensus 380 ~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l 413 (554)
T 3g4d_A 380 QSYLVEAKWTLQNYKPSFEEFKANALPTCGYAML 413 (554)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhccceeehHHHH
Confidence 9999999999999999999999999999998875
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.2e-119 Score=934.61 Aligned_cols=343 Identities=44% Similarity=0.821 Sum_probs=332.0
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhcCC---------CCchhHHHHHHHHHHhcCCCCCcccccccccCCCc
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT---------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKG 74 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~---------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G 74 (356)
...||..||.|+ |||+|||++||+++|++||+++. ..||++|||+|||||||||+||| |||++|||++|
T Consensus 50 ~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~-dvf~~Fk~~~g 128 (543)
T 2ong_A 50 QIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ-EVFDSFKNEEG 128 (543)
T ss_dssp HHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTS
T ss_pred HHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccH-HHHhcccCCCC
Confidence 457899999998 99999999999999999998654 25999999999999999999999 99999999999
Q ss_pred ccccCCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHH
Q 041613 75 SFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLE 154 (356)
Q Consensus 75 ~F~~~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 154 (356)
+|+++ +.+||+||||||||||+++||| +|||||++||++||++.+.++ .++++|+++|+|||++|||+++||||
T Consensus 129 ~F~~~-l~~d~~glL~Ly~As~l~~~gE-~iL~eA~~Ft~~~L~~~~~~~----~~~~~l~~~V~~aL~~P~~~~l~rle 202 (543)
T 2ong_A 129 EFKES-LSDDTRGLLQLYEASFLLTEGE-TTLESAREFATKFLEEKVNEG----GVDGDLLTRIAYSLDIPLHWRIKRPN 202 (543)
T ss_dssp SBCTT-GGGCHHHHHHHHHHHTTCCSSC-HHHHHHHHHHHHHHHHHHHSS----CSSSHHHHHHHHHHHSCTTTSCSTTT
T ss_pred Cccch-hhhccHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHHHHhcc----CCCCcHHHHHHHHHhhhHhccchHHH
Confidence 99998 8999999999999999999999 999999999999999998753 13788999999999999999999999
Q ss_pred HHHhHHHhcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchh
Q 041613 155 ARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCR 234 (356)
Q Consensus 155 ar~yI~~Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R 234 (356)
||+||++|++++++|++||||||||||+||++||+||++++|||+++||++++||||||+||||||++|++|||+||.+|
T Consensus 203 ar~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~R 282 (543)
T 2ong_A 203 APVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASAR 282 (543)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHH
T ss_pred HHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHH
Q 041613 235 RMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLK 314 (356)
Q Consensus 235 ~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~ 314 (356)
+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|+++++.+.||++ +++|++
T Consensus 283 l~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~-~~~~l~ 361 (543)
T 2ong_A 283 IMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVN-VIPYLR 361 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 315 KAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 315 ~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
++|++++++|++||||+++||+||+||||+||.+|+|++++
T Consensus 362 ~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l 402 (543)
T 2ong_A 362 QSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCM 402 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHH
Confidence 99999999999999999999999999999999999998865
No 5
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=4.7e-119 Score=934.07 Aligned_cols=342 Identities=47% Similarity=0.840 Sum_probs=327.7
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHH-hcCC--CCchhHHHHHHHHHHhcCCCCCcccccccccCCCc-ccccC
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERIC-NKNT--EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKG-SFKSS 79 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy-~~~~--~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G-~F~~~ 79 (356)
...||..||.|+ |||+|||++||+++|++|| ++++ ..||++|||+|||||||||+||| |||++|||++| +|+++
T Consensus 83 ~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~Dl~~~al~FRlLR~hGy~Vs~-dvF~~Fkd~~G~~F~~~ 161 (569)
T 2j5c_A 83 SIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQ-EVFDCFKNAKGTDFKPS 161 (569)
T ss_dssp HHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCSCTTCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCSSSSSBCGG
T ss_pred HHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCcccCChhhhhHHhHHHHhcCCCcCH-HHHhcccCCCCCccccc
Confidence 457899999999 9999999999999999999 7653 47999999999999999999999 99999999999 99998
Q ss_pred CCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHHHHHhH
Q 041613 80 SHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLEARWFI 159 (356)
Q Consensus 80 ~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI 159 (356)
+.+||+||||||||||+++||| +|||||++||++||++.+.+ .++++|+++|+|||++|||+++||||||+||
T Consensus 162 -l~~dv~glL~LY~As~l~~~gE-~iLdeA~~Ft~~~L~~~~~~-----~~~~~l~~~V~~aL~~P~~~~l~rlear~yI 234 (569)
T 2j5c_A 162 -LVDDTRGLLQLYEASFLSAQGE-ETLRLARDFATKFLQKRVLV-----DKDINLLSSIERALELPTHWRVQMPNARSFI 234 (569)
T ss_dssp -GGGCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHTTSSCC---------CHHHHHHHHHHHHSCGGGCCSHHHHHHHH
T ss_pred -hhhccHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHHhcCccccCcHHHHHHHHH
Confidence 8999999999999999999999 99999999999999988755 1378999999999999999999999999999
Q ss_pred HHhcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhhhHHH
Q 041613 160 DVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRRMSTM 239 (356)
Q Consensus 160 ~~Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~~~aK 239 (356)
++|++++++|++||||||||||+||++||+||++|+|||+++||++++||||||+||||||++|++|||+||.+|+++||
T Consensus 235 ~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK 314 (569)
T 2j5c_A 235 DAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTK 314 (569)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHH
T ss_pred HHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Q 041613 240 VNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWAD 319 (356)
Q Consensus 240 ~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~ 319 (356)
++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+++++|+++++.+.||++ +++|++++|++
T Consensus 315 ~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~-~~~~l~~~w~~ 393 (569)
T 2j5c_A 315 INALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFD-STPYLRKVWVG 393 (569)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 320 ICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 320 l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
++++|++||||+++||+||+||||+||.+|+|++++
T Consensus 394 l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l 429 (569)
T 2j5c_A 394 LIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPI 429 (569)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHH
Confidence 999999999999999999999999999999998875
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.4e-118 Score=927.44 Aligned_cols=345 Identities=46% Similarity=0.842 Sum_probs=329.9
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhcCC--------CCchhHHHHHHHHHHhcCCCCCcccccccccCCCc-
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT--------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEKG- 74 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~--------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~G- 74 (356)
...||..||.|+ |||+|||++||+++|++||+++. ..||++|||+|||||||||+||| |||++|||++|
T Consensus 54 ~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~-dvf~~Fk~~~g~ 132 (549)
T 1n1b_A 54 PVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ-DVFNCFKNEKGI 132 (549)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSS
T ss_pred HHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCH-HHHhhccCCCCC
Confidence 457899999998 99999999999999999998641 26999999999999999999999 99999999999
Q ss_pred ccccCCCCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCchhHH
Q 041613 75 SFKSSSHGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTRRLE 154 (356)
Q Consensus 75 ~F~~~~~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 154 (356)
+|+++ +.+||+||||||||||+++||| +|||||++||++||++.+.++. +.++++|+++|+|||++|||+++||||
T Consensus 133 ~F~~~-l~~d~~glL~LY~As~l~~~gE-~iL~eA~~Ft~~~L~~~~~~~~--~~~~~~l~~~V~~aL~~P~~~~l~rle 208 (549)
T 1n1b_A 133 DFKAS-LAQDTKGMLQLYEASFLLRKGE-DTLELAREFATKCLQKKLDEGG--NEIDENLLLWIRHSLDLPLHWRIQSVE 208 (549)
T ss_dssp SBCGG-GGGCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHTC--------CHHHHHHHHHHHHSCGGGCCTTTS
T ss_pred ccchh-hhhccHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHhccc--ccCCCcHHHHHHHHhcCchhcCchHHH
Confidence 99998 8999999999999999999999 9999999999999999976420 113788999999999999999999999
Q ss_pred HHHhHHHhcCCCCCChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchh
Q 041613 155 ARWFIDVYQSGPNTNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCR 234 (356)
Q Consensus 155 ar~yI~~Y~~~~~~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R 234 (356)
||+||++|++++++|++||||||||||+||++||+||++++|||+++||.++|||||||+||||||++|++|||+||.+|
T Consensus 209 ar~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~R 288 (549)
T 1n1b_A 209 ARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQR 288 (549)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHH
Q 041613 235 RMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLK 314 (356)
Q Consensus 235 ~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~ 314 (356)
+++||++++++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|+++++.+.||++ +++|++
T Consensus 289 l~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~-~~~~l~ 367 (549)
T 1n1b_A 289 KMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFF-CLQYLR 367 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 315 KAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 315 ~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
++|++++++|++||||+++||+||+||||+||.+|+|++++
T Consensus 368 ~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l 408 (549)
T 1n1b_A 368 KSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAI 408 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHH
Confidence 99999999999999999999999999999999999998765
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=8.7e-117 Score=943.23 Aligned_cols=346 Identities=33% Similarity=0.579 Sum_probs=328.4
Q ss_pred ccccccccccc-cccccccHHHHHHHHHHHHhcCC-----------CCchhHHHHHHHHHHhcCCCCCcccccccccCCC
Q 041613 6 PCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT-----------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEK 73 (356)
Q Consensus 6 ~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~-----------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~ 73 (356)
..||..||.|+ |||+|||++||+++|++||+++. ..||++|||+|||||||||+||| |||++|+|++
T Consensus 271 ~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~-dvf~~F~d~~ 349 (785)
T 3s9v_A 271 FERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSS-DVLKTFRDEN 349 (785)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTT
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHhcC
Confidence 46889999998 99999999999999999998643 15999999999999999999999 9999999999
Q ss_pred cccccCC--CCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCC-CCC-CCCchHHHHHHHhccCcccCC
Q 041613 74 GSFKSSS--HGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHD-NNK-HHNEYLCTLVNHALELPLHWR 149 (356)
Q Consensus 74 G~F~~~~--~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~-~~~-~~~~~L~~eV~~aL~~P~~~~ 149 (356)
|+|+++. ..+|++||||||||||+++||| +|||||++||++||++.+.++. .|+ .++++|++||+|||++|||++
T Consensus 350 g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~ 428 (785)
T 3s9v_A 350 GEFFCFLGQTQRGVTDMLNVNRCSHVSFPGE-TIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKS 428 (785)
T ss_dssp SCBCSSTTCCCCCHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGC
T ss_pred CCeeeccccccccccccHHHHhHhhcCCCCc-HHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccC
Confidence 9998752 4799999999999999999999 9999999999999999876532 333 467889999999999999999
Q ss_pred chhHHHHHhHHHhcCCCC------------CChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhH
Q 041613 150 TRRLEARWFIDVYQSGPN------------TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMEN 217 (356)
Q Consensus 150 l~Rlear~yI~~Y~~~~~------------~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~ 217 (356)
+||||||+||++|++++. +|++||||||||||+||++||+||++|+||||++|+ .+|||||||+|||
T Consensus 429 l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~ 507 (785)
T 3s9v_A 429 MPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEI 507 (785)
T ss_dssp CHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHHH
T ss_pred chHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHHH
Confidence 999999999999998875 499999999999999999999999999999999999 6999999999999
Q ss_pred HHHhhccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHH
Q 041613 218 FFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMA 297 (356)
Q Consensus 218 yfwa~~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~ 297 (356)
|||++|++||||||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|++++|||+
T Consensus 508 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~ 587 (785)
T 3s9v_A 508 YFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIA 587 (785)
T ss_dssp HHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 298 FDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 298 ~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
+++.+.||++ +++|++++|++++++|++||||+++||+||+||||+||++|+|++++
T Consensus 588 ~~~~~~~g~~-~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l 644 (785)
T 3s9v_A 588 KEGRERQGRD-VLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTV 644 (785)
T ss_dssp HHHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHH
Confidence 9999999999 99999999999999999999999999999999999999999998764
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.3e-116 Score=945.15 Aligned_cols=345 Identities=37% Similarity=0.631 Sum_probs=324.3
Q ss_pred ccccccccccc-cccccccHHHHHHHHHHHHhcCC-----------CCchhHHHHHHHHHHhcCCCCCcccccccccCCC
Q 041613 6 PCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT-----------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEK 73 (356)
Q Consensus 6 ~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~-----------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~ 73 (356)
..||..||.|+ |||+|||++||+++|++||+++. ..||++|||+|||||||||+||| |||++|+|++
T Consensus 299 ~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~-dvf~~F~d~~ 377 (817)
T 3sdr_A 299 LERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSP-AIFDNFKDAN 377 (817)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCC-
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccH-hHHHHHhhcC
Confidence 46899999998 99999999999999999998643 15999999999999999999999 9999999999
Q ss_pred cccccCC--CCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCC-CC-CCCCchHHHHHHHhccCcccCC
Q 041613 74 GSFKSSS--HGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHD-NN-KHHNEYLCTLVNHALELPLHWR 149 (356)
Q Consensus 74 G~F~~~~--~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~-~~-~~~~~~L~~eV~~aL~~P~~~~ 149 (356)
|+|+++. +.+|++||||||||||+++||| +|||||++||++||++.+.++. .+ +.++++|++||+|||++|||++
T Consensus 378 g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~ 456 (817)
T 3sdr_A 378 GKFICSTGQFNKDVASMLNLYRASQLAFPGE-NILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHAS 456 (817)
T ss_dssp -CBCCCSSCHHHHHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTC
T ss_pred CCceechhhhchhhHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhcc
Confidence 9999861 3589999999999999999999 9999999999999999876431 12 1245789999999999999999
Q ss_pred chhHHHHHhHHHhcCCCC------------CChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhH
Q 041613 150 TRRLEARWFIDVYQSGPN------------TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMEN 217 (356)
Q Consensus 150 l~Rlear~yI~~Y~~~~~------------~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~ 217 (356)
+||||||+||++|++++. +|++||||||||||+||++||+||++|+||||++|+ .+|||||||+|||
T Consensus 457 l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~ 535 (817)
T 3sdr_A 457 VPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEF 535 (817)
T ss_dssp CHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHHH
T ss_pred ChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHHH
Confidence 999999999999998875 599999999999999999999999999999999999 6999999999999
Q ss_pred HHHhhccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHH
Q 041613 218 FFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMA 297 (356)
Q Consensus 218 yfwa~~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~ 297 (356)
|||++|++||||||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|++++||++
T Consensus 536 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~ 615 (817)
T 3sdr_A 536 YFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVA 615 (817)
T ss_dssp HHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhccccc
Q 041613 298 FDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPV 354 (356)
Q Consensus 298 ~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~ 354 (356)
+++.++||++ +++|++++|++++++|++||||+++||+||+||||+||++|+|+++
T Consensus 616 ~~~~~~~g~~-~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ 671 (817)
T 3sdr_A 616 WEAEKEQGRE-LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRI 671 (817)
T ss_dssp HHHHHHHSSC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccH
Confidence 9999999999 9999999999999999999999999999999999999999999876
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=4.3e-116 Score=935.67 Aligned_cols=341 Identities=34% Similarity=0.573 Sum_probs=324.6
Q ss_pred ccccccccccc-cccccccHHHHHHHHHHHHhcCC-----------CCchhHHHHHHHHHHhcCCCCCcccccccccCCC
Q 041613 6 PCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT-----------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDEK 73 (356)
Q Consensus 6 ~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~-----------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~~ 73 (356)
..||..||.|+ |||+|||++||+++|++||+++. ..||++|||+|||||||||+||| |||++|+|++
T Consensus 247 ~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~-dvf~~F~d~~ 325 (764)
T 3p5p_A 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSS-DVLNNFKDEN 325 (764)
T ss_dssp HHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTT
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccH-hHHHhhhcCC
Confidence 46889999988 99999999999999999998643 15999999999999999999999 9999999999
Q ss_pred cccccCC--CCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHhccCcccCCch
Q 041613 74 GSFKSSS--HGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHDNNKHHNEYLCTLVNHALELPLHWRTR 151 (356)
Q Consensus 74 G~F~~~~--~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~ 151 (356)
|+|+++. +.+|++||||||||||+++||| +|||||++||++||++.+.++ +.++++|++||+|||++|||+++|
T Consensus 326 g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE-~iLdeA~~Fs~~~L~~~~~~~---~~~~~~L~~eV~~aL~~P~~~~l~ 401 (764)
T 3p5p_A 326 GRFFSSAGQTHVELRSVVNLFRASDLAFPDE-RAMDDARKFAEPYLREALATK---ISTNTKLFKEIEYVVEYPWHMSIP 401 (764)
T ss_dssp SCBCSCTTCSCCCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHHHT---SCSSSHHHHHHHHHHHSCGGGCCH
T ss_pred CCccccccccccccHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHhcc---CCCCccHHHHHHHHhcCchhccch
Confidence 9998642 6899999999999999999999 999999999999999987642 236789999999999999999999
Q ss_pred hHHHHHhHHHhcCCCC------------CChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchhhHHH
Q 041613 152 RLEARWFIDVYQSGPN------------TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIMENFF 219 (356)
Q Consensus 152 Rlear~yI~~Y~~~~~------------~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~ve~yf 219 (356)
|||||+||++|++++. +|++||||||||||+||++||+||++|+||||++|+ .+|||||||+|||||
T Consensus 402 Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yf 480 (764)
T 3p5p_A 402 RLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYF 480 (764)
T ss_dssp HHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHH
Confidence 9999999999998865 499999999999999999999999999999999999 699999999999999
Q ss_pred HhhccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHH
Q 041613 220 WTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFD 299 (356)
Q Consensus 220 wa~~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~ 299 (356)
|++| ||||||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++++++||+|||+||.+|++++|||+++
T Consensus 481 w~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 481 SSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp HTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhcccccc
Q 041613 300 ALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISISAPVI 355 (356)
Q Consensus 300 ~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~~~~~ 355 (356)
+.+.||++ +++|++++|++++++|++||||+++||+||+||||+||++|+|++++
T Consensus 559 ~~~~~g~~-~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l 613 (764)
T 3p5p_A 559 VVKVQGRD-MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPC 613 (764)
T ss_dssp HHHHHSSC-CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCcc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHH
Confidence 99999999 99999999999999999999999999999999999999999998753
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=4.8e-102 Score=821.80 Aligned_cols=318 Identities=25% Similarity=0.368 Sum_probs=291.7
Q ss_pred cccccccccccc-cccccccHHHHHHHHHHHHhcCC-----------CCchhHHHHHHHHHHhcCCCCCcccccccccCC
Q 041613 5 APCQLDNSSSLP-LYLQLIMLDEIKRTLERICNKNT-----------EKSLYTVALKFRILRQYGYDTPVKETFSCFMDE 72 (356)
Q Consensus 5 ~~~~~~~~~~~~-LGI~~hFe~EI~~~L~~iy~~~~-----------~~DL~~~AL~FRLLR~hGy~VSs~DvF~~Fkd~ 72 (356)
...||..||.|+ |||+|||++||+++|++||++|. ..||++|||+|||||||||+||| |||++|+ +
T Consensus 245 ~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~-DvF~~Fk-~ 322 (727)
T 3pya_A 245 LFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSA-DVFKNFE-K 322 (727)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCG-GGGGGGE-E
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCH-HHHHhcc-C
Confidence 356889999998 99999999999999999998642 15999999999999999999999 9999999 7
Q ss_pred CcccccCC--CCCchhHHHhHhhhcccCCcCcHHHHHHHHHHHHHHHHHHhhcCC-CC-CCCCchHHHHHHHhccCcccC
Q 041613 73 KGSFKSSS--HGDDCKGMLALYEAAYLLVEGESSIFRDAISFTTAYLKEWAAKHD-NN-KHHNEYLCTLVNHALELPLHW 148 (356)
Q Consensus 73 ~G~F~~~~--~~~dv~glLsLYeAS~l~~~gE~~iLdeA~~Ft~~~L~~~~~~~~-~~-~~~~~~L~~eV~~aL~~P~~~ 148 (356)
+|+|++.. ..+|++|||+||||||+++||| +|||||++||++||++.+.++. .+ +.++++|+++|+|||++|||+
T Consensus 323 ~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE-~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~ 401 (727)
T 3pya_A 323 EGEFFCFVGQSNQAVTGMFNLYRASQLAFPRE-EILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYA 401 (727)
T ss_dssp TTEECSSTTCCCCCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGG
T ss_pred CCcccccccccccccHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhc
Confidence 89998431 5689999999999999999999 9999999999999999876543 23 345788999999999999999
Q ss_pred CchhHHHHHhHHHhcCCCC-------------CChHHHHHHhhchHHHHHhhHhHHHHHHHHHHHcCCCcCCcccccchh
Q 041613 149 RTRRLEARWFIDVYQSGPN-------------TNPILLDLAKLDFNIVQAVHQEDIKYASRWWKKTGLGERLNFARDRIM 215 (356)
Q Consensus 149 ~l~Rlear~yI~~Y~~~~~-------------~n~~lLeLAKlDFn~~Q~~hq~EL~~lsrWw~e~~l~~~l~faRdr~v 215 (356)
++||||||+||++|+++++ +|++||||||+|||+||++||+||++|+||||++|| .+|||||||+|
T Consensus 402 ~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~v 480 (727)
T 3pya_A 402 SLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELL 480 (727)
T ss_dssp CCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTCCHHHHH
T ss_pred CChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCchhhHHH
Confidence 9999999999999997654 699999999999999999999999999999999999 67999999999
Q ss_pred hHHHHhhccccCCCccchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCch---------hhhc---Cchh--
Q 041613 216 ENFFWTVGVIFEPNFGYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTT---------TIEQ---LPNY-- 281 (356)
Q Consensus 216 e~yfwa~~~~fEP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~---------~~~~---Lpey-- 281 (356)
|||||++|++||||||.+|++|||+++|+|++||+||+|| |||++||+||+|||.+ +++. +|+|
T Consensus 481 e~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~ 558 (727)
T 3pya_A 481 ECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQ 558 (727)
T ss_dssp HHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHH
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHH
Confidence 9999999999999999999999999999999999999999 9999999999999974 4443 3887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHh
Q 041613 282 MKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAK 329 (356)
Q Consensus 282 mk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAk 329 (356)
||+||.+|+||+||++.++.++||++ +++|++++|.+++++|++||+
T Consensus 559 mk~~f~aL~~t~nei~~~~~k~qg~~-v~~~l~~~W~~~l~s~~~Ea~ 605 (727)
T 3pya_A 559 ASRLAGVLIGTLNQMSFDLFMSHGRD-VNNLLYLSWGDWMEKWKLYGD 605 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999 999999999999999999998
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=99.97 E-value=4.1e-33 Score=269.33 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=141.4
Q ss_pred HhhHhHHHH-HHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhh-hHHHHHHHHHhhhhhhccc--CCHHHH
Q 041613 185 AVHQEDIKY-ASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRR-MSTMVNALITTIDDVYDVY--GTLDEL 260 (356)
Q Consensus 185 ~~hq~EL~~-lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~-~~aK~~~l~tviDD~yD~y--gTleEl 260 (356)
+.|.+|+++ +++||+++|+.+ .||+|+|+++||||.+|++++|+++.+|+ ++||.+++++++||+||.| ||++|+
T Consensus 16 ~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~ 94 (337)
T 1ps1_A 16 SPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDT 94 (337)
T ss_dssp CTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHH
Confidence 445666654 456999999965 69999999999999999999999999999 9999999999999999999 699999
Q ss_pred HHHHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCC-Ch
Q 041613 261 ELFTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIP-TL 339 (356)
Q Consensus 261 ~~ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~P-t~ 339 (356)
+.||++++||+.+ .+|+||+.+|.+++++.++++.. .+.. ..+++++.|++++++++.||+|+++|++| |+
T Consensus 95 ~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~ 166 (337)
T 1ps1_A 95 KQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEG----MTPA-WCARSARHWRNYFDGYVDEAESRFWNAPCDSA 166 (337)
T ss_dssp HHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTT----SCHH-HHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhcc----CCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 9999999999864 58999999999999999998876 3555 68999999999999999999999999999 99
Q ss_pred HHHHhhhhhhcccccc
Q 041613 340 QEYMENAWISISAPVI 355 (356)
Q Consensus 340 eEYl~n~~iS~~~~~~ 355 (356)
+|||+|+.+|+|++++
T Consensus 167 eEYl~~r~~s~g~~~~ 182 (337)
T 1ps1_A 167 AQYLAMRRHTIGVQPT 182 (337)
T ss_dssp HHHHHHHHHHTCHHHH
T ss_pred HHHHHHcccccchhhH
Confidence 9999999999998764
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=99.97 E-value=3.2e-32 Score=258.43 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=141.4
Q ss_pred hhHhHHHHHH-HHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhh-hHHHHHHHHHhhhhhhcccCCHHHHHHH
Q 041613 186 VHQEDIKYAS-RWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRR-MSTMVNALITTIDDVYDVYGTLDELELF 263 (356)
Q Consensus 186 ~hq~EL~~ls-rWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~-~~aK~~~l~tviDD~yD~ygTleEl~~f 263 (356)
-|.+|+++.+ +||+++|+. ++||+|+|++++|||.++++++|+++.+|+ ++||.+++++++||+||. ||++|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 3567776654 566999996 679999999999999999999999999999 999999999999999999 899999999
Q ss_pred HHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHH
Q 041613 264 TDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYM 343 (356)
Q Consensus 264 t~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl 343 (356)
|+++.||+.+ +.+|+|||.+|.++++++++++..+ + .+.++.|+.++++|+ ||+|+.+|++||++|||
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~-~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl 158 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHD-A--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYL 158 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhC-h--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHH
Confidence 9999999875 5799999999999999999999876 2 356788999999998 89999999999999999
Q ss_pred hhhhhhcccccc
Q 041613 344 ENAWISISAPVI 355 (356)
Q Consensus 344 ~n~~iS~~~~~~ 355 (356)
+++.+|+|++++
T Consensus 159 ~~r~~s~g~~~~ 170 (300)
T 1di1_A 159 EYREKDVGKALL 170 (300)
T ss_dssp HHHHTCHHHHHH
T ss_pred HHHhhhccHHHH
Confidence 999999998764
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=99.97 E-value=1.9e-31 Score=255.87 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=140.3
Q ss_pred HhhHhHHHHHH-HHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhh-hHHHHHHHHHhhhhhhcccCCHHHHHH
Q 041613 185 AVHQEDIKYAS-RWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRR-MSTMVNALITTIDDVYDVYGTLDELEL 262 (356)
Q Consensus 185 ~~hq~EL~~ls-rWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~-~~aK~~~l~tviDD~yD~ygTleEl~~ 262 (356)
..|.+|+++.+ +||+++|+..+ ||+|+|+++||||.++++++|+++.+|+ ++||.+++++++||+||. ||++|++.
T Consensus 26 ~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~ 103 (320)
T 3bny_A 26 HPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSA 103 (320)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHH
Confidence 44567776555 56699999766 9999999999999999999999999999 899999999999999999 99999999
Q ss_pred HHHHhhhcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHH
Q 041613 263 FTDAVERWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEY 342 (356)
Q Consensus 263 ft~aveRWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEY 342 (356)
||++++||+.+ +.+|+|||.+|.++++++++++..+ + .+.++.|+.++ ++++|++|..+|++||++||
T Consensus 104 ~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~--------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeY 171 (320)
T 3bny_A 104 YNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R--------EMADEILEPVF-LFMRAQTDRTRARPMGLGGY 171 (320)
T ss_dssp HHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H--------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHH
T ss_pred HHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H--------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHH
Confidence 99999999964 5789999999999999999999875 2 25577788888 59999999999999999999
Q ss_pred Hhhhhhhcccccc
Q 041613 343 MENAWISISAPVI 355 (356)
Q Consensus 343 l~n~~iS~~~~~~ 355 (356)
|+++.+|+|++++
T Consensus 172 l~~r~~s~g~~~~ 184 (320)
T 3bny_A 172 LEYRERDVGKELL 184 (320)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHHhhhcccHHHH
Confidence 9999999998764
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=99.93 E-value=9.2e-27 Score=230.68 Aligned_cols=156 Identities=9% Similarity=0.011 Sum_probs=139.4
Q ss_pred HHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCccchhh-hHHHHHHHHHhhhhhhcc--cC-CHHHHHHHHHHhh
Q 041613 193 YASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNFGYCRR-MSTMVNALITTIDDVYDV--YG-TLDELELFTDAVE 268 (356)
Q Consensus 193 ~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~s~~R~-~~aK~~~l~tviDD~yD~--yg-TleEl~~ft~ave 268 (356)
++.+||+++|+. .-+++|+|+++|+||.++++++|+++..|+ ++||.+++++++||+||. +| +++|++.|++++.
T Consensus 65 ~~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~ 143 (382)
T 3kb9_A 65 TTRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLH 143 (382)
T ss_dssp HHHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 367899999994 348999999999999999999999999999 999999999999999997 67 9999999999999
Q ss_pred hcCchhhhcCchhHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhh
Q 041613 269 RWDTTTIEQLPNYMKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWI 348 (356)
Q Consensus 269 RWD~~~~~~Lpeymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~i 348 (356)
++ .+....+|++++.++.++.++.++++..+.+ . ...+++++|++++++|++||+|+++|++||++|||+|+.+
T Consensus 144 ~~-l~~~~~~p~~~~p~~~al~dl~~~~~~~~~~----~-~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~ 217 (382)
T 3kb9_A 144 TA-LDSPGDHLHHEDTLVAGFADSVRRLYAFLPA----T-WNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRL 217 (382)
T ss_dssp HH-HHSCGGGTTCSSHHHHHHHHHHHHHTTSSCH----H-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HH-hcCCCCCCCCCChHHHHHHHHHHHHHccCCH----H-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhh
Confidence 86 2222336899999999999999999876443 3 4789999999999999999999999999999999999999
Q ss_pred hcccccc
Q 041613 349 SISAPVI 355 (356)
Q Consensus 349 S~~~~~~ 355 (356)
|+|++++
T Consensus 218 s~g~~~~ 224 (382)
T 3kb9_A 218 TFAHWIW 224 (382)
T ss_dssp HTTHHHH
T ss_pred hcCHHHH
Confidence 9998764
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.19 E-value=8.3e-11 Score=118.64 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=100.9
Q ss_pred HHHHHHHHcCCCcCCcccccchhhHHHHhhccccCCCc-cchhh-hHHHHHHHHHhhhhhh-cccC-CHHH-HHHHHH--
Q 041613 193 YASRWWKKTGLGERLNFARDRIMENFFWTVGVIFEPNF-GYCRR-MSTMVNALITTIDDVY-DVYG-TLDE-LELFTD-- 265 (356)
Q Consensus 193 ~lsrWw~e~~l~~~l~faRdr~ve~yfwa~~~~fEP~~-s~~R~-~~aK~~~l~tviDD~y-D~yg-TleE-l~~ft~-- 265 (356)
++..|-.+.++... +-.|++...+=|--++.+.=|.= +..|+ ..+|......++||.| |..| |.+. -..+..
T Consensus 134 ~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~ 212 (433)
T 3v1v_A 134 RIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAH 212 (433)
T ss_dssp HHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHH
Confidence 56679988765322 33467777766666655566666 56676 6789999999999995 9866 3332 122222
Q ss_pred -HhhhcCchhhhcCchh-----HHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCCh
Q 041613 266 -AVERWDTTTIEQLPNY-----MKLCFHALHNSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTL 339 (356)
Q Consensus 266 -aveRWD~~~~~~Lpey-----mk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~ 339 (356)
++.+-.. ..+.-|.. -..+-.+++++++++...+.+.+ ..+++++|++++++|++||+|+++||+||+
T Consensus 213 ~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~~q-----~~r~~~~~~~~~~a~l~EA~W~~~g~vPsl 286 (433)
T 3v1v_A 213 TAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATPSQ-----SDRYRHDMARLHLGYLAEGAWAQTGHVPEV 286 (433)
T ss_dssp TTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 2222110 00100100 11346888999999988765544 677899999999999999999999999999
Q ss_pred HHHHhhhhhhcccc
Q 041613 340 QEYMENAWISISAP 353 (356)
Q Consensus 340 eEYl~n~~iS~~~~ 353 (356)
+|||+++.+| |+.
T Consensus 287 eEYl~~R~~s-g~~ 299 (433)
T 3v1v_A 287 WEYLAMRQFN-NFR 299 (433)
T ss_dssp HHHHHHHHHS-SST
T ss_pred HHHHHHHHHH-hHH
Confidence 9999999999 544
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=92.86 E-value=0.21 Score=49.18 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=78.5
Q ss_pred cchhhHHHHhhccccCCCc-cchhhhHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcCchhhhcCchhHHHHHHHHH
Q 041613 212 DRIMENFFWTVGVIFEPNF-GYCRRMSTMVNALITTIDDVYDVYGTLDELELFTDAVERWDTTTIEQLPNYMKLCFHALH 290 (356)
Q Consensus 212 dr~ve~yfwa~~~~fEP~~-s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~aveRWD~~~~~~Lpeymk~~f~al~ 290 (356)
++.+.+=.|.++..| |.- .......++...++.++||.+|.-+ +++..|.+.+-+ +..+ +. .+..+
T Consensus 64 ~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~l~~~~~~ll~----G~~~-~~---Pl~~a-- 130 (374)
T 1yyq_A 64 QASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA----GREQ-AH---PWWAL-- 130 (374)
T ss_dssp HHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HHHTTHHHHHHH----TCCC-SS---HHHHH--
T ss_pred HHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HHHHHHHHHHhc----CCCC-CC---hHHHH--
Confidence 344444444333333 333 3456778999999999999998644 777878877654 1111 11 23333
Q ss_pred HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHHHHHhHccCCCCCChHHHHhhhhhhcc
Q 041613 291 NSINEMAFDALRDQGVGMVISYLKKAWADICKTYLVEAKSYNNGYIPTLQEYMENAWISIS 351 (356)
Q Consensus 291 ~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~~a~l~EAkW~~~~~~Pt~eEYl~n~~iS~~ 351 (356)
+.++=.++.+.-|.. ....+.+.|.+.+.+...|+. +.+..|+.++|..--..++|
T Consensus 131 --l~dl~~rl~~~~~p~-~~~rf~~s~~~~~~a~~~Ea~--n~~~~p~~~~Y~~~rR~~sG 186 (374)
T 1yyq_A 131 --VNEHFPNVLRHFGPF-CSLNLIRSTLDFFEGCWIEQY--NFGGFPGSHDYPQFLRRMNG 186 (374)
T ss_dssp --HHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHTT--CCCCCTTCTTHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHhhcc
Confidence 444444444444544 567788899999999999986 47778999999775444444
No 17
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=43.99 E-value=89 Score=29.44 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHhhhcCchhh-hcCchh-HHHHHHHHHHHHHHHHHHH---------HHccCcchhHHHHHHHHHHHHHHH
Q 041613 256 TLDELELFTDAVERWDTTTI-EQLPNY-MKLCFHALHNSINEMAFDA---------LRDQGVGMVISYLKKAWADICKTY 324 (356)
Q Consensus 256 TleEl~~ft~aveRWD~~~~-~~Lpey-mk~~f~al~~~~~ei~~~~---------~~~~g~~~~~~~l~~~w~~l~~a~ 324 (356)
+-+|+..|.+++++|-...+ -+.|++ ...++..+.+.++.++... ..+++ +.+++......+..+|
T Consensus 104 ~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~ell~~i~~~~~~~~~L~~~Fnd~~---~S~~iv~~LRllts~y 180 (284)
T 4dhi_B 104 DRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDG---SANYILMFFRLITSAF 180 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHSHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCcc---cchHHHHHHHHHHHHH
Confidence 45899999999998865433 234554 4667777777766664321 11111 2334444444567777
Q ss_pred HHHHhHccCCCC---CChHHHHhhhhhhcc
Q 041613 325 LVEAKSYNNGYI---PTLQEYMENAWISIS 351 (356)
Q Consensus 325 l~EAkW~~~~~~---Pt~eEYl~n~~iS~~ 351 (356)
|+.-...-..++ +++++|-+.-+.+.+
T Consensus 181 i~~~~d~f~pFi~~~~~v~~yC~~eVe~~~ 210 (284)
T 4dhi_B 181 LKQNSEEYAPFIDEGMTVAQYCEQEIEPMW 210 (284)
T ss_dssp HHHTHHHHGGGSCTTCCHHHHHHHHTSSTT
T ss_pred HHHCHHHHHhhcCCCCCHHHHHHHhceehh
Confidence 776554444555 379999886554444
No 18
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.81 E-value=2.3e+02 Score=22.29 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=41.6
Q ss_pred ccCCHHHHHHHHHHhhhcCc----------hhhhcCc---h----hHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHH
Q 041613 253 VYGTLDELELFTDAVERWDT----------TTIEQLP---N----YMKLCFHALHNSINEMAFDALRDQGVGMVISYLKK 315 (356)
Q Consensus 253 ~ygTleEl~~ft~aveRWD~----------~~~~~Lp---e----ymk~~f~al~~~~~ei~~~~~~~~g~~~~~~~l~~ 315 (356)
+.|.+||++.|..-+++-.. +.-+.|. + ..--.|..+.++++.+.+.+.. -++||++
T Consensus 4 a~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e------~vp~L~~ 77 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQE------QIAWLKE 77 (94)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHH------HhHHHHH
Confidence 35778888888777665321 1122222 1 1234566666777777665444 5899999
Q ss_pred HHHHHHHHHHH
Q 041613 316 AWADICKTYLV 326 (356)
Q Consensus 316 ~w~~l~~a~l~ 326 (356)
..+-+-..||.
T Consensus 78 ~i~vle~~~~~ 88 (94)
T 3fx7_A 78 RIRVLEEDYLE 88 (94)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhHHHHHH
Confidence 88888777763
No 19
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=22.12 E-value=2.6e+02 Score=24.99 Aligned_cols=90 Identities=14% Similarity=0.330 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHhhhcCchhh-hcCchh-HHHHHHHHHHHHHHHHHH--------HHHccC-cchhHHHHHHHHHHHHHHH
Q 041613 256 TLDELELFTDAVERWDTTTI-EQLPNY-MKLCFHALHNSINEMAFD--------ALRDQG-VGMVISYLKKAWADICKTY 324 (356)
Q Consensus 256 TleEl~~ft~aveRWD~~~~-~~Lpey-mk~~f~al~~~~~ei~~~--------~~~~~g-~~~~~~~l~~~w~~l~~a~ 324 (356)
+.+|+..|.++++++....+ -..|+. ...++.+....++.++.. +...++ .+.++.++|. ++.+|
T Consensus 70 ~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~~~~~~~L~~~fndq~~s~~~v~~lR~----lta~y 145 (234)
T 2zfy_A 70 DSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRL----LTSGY 145 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHH----HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhccchHHHHHHHH----HHHHH
Confidence 45799999999987754332 123554 344556655555555421 111111 1113444444 45556
Q ss_pred HHHHhHccCCCCC---ChHHHHhhhhhh
Q 041613 325 LVEAKSYNNGYIP---TLQEYMENAWIS 349 (356)
Q Consensus 325 l~EAkW~~~~~~P---t~eEYl~n~~iS 349 (356)
|++-+-.-...++ ++++|.+..+..
T Consensus 146 i~~~~d~f~pFi~~~~~~e~yc~~~ve~ 173 (234)
T 2zfy_A 146 LQRESKFFEHFIEGGRTVKEFCQQEVEP 173 (234)
T ss_dssp HHHTHHHHGGGCCSSCCHHHHHHHHTSS
T ss_pred HHHCHHHHhcccCCCCCHHHHHHHHhhh
Confidence 6654433333443 899998754433
No 20
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.31 E-value=1.7e+02 Score=22.63 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=33.2
Q ss_pred hhhhcCchhHHHHHHHHH-------HHHHHHHHHHHHccCcchhHHHHHHHHHHHH
Q 041613 273 TTIEQLPNYMKLCFHALH-------NSINEMAFDALRDQGVGMVISYLKKAWADIC 321 (356)
Q Consensus 273 ~~~~~Lpeymk~~f~al~-------~~~~ei~~~~~~~~g~~~~~~~l~~~w~~l~ 321 (356)
.+++.||+.-+.++..-+ -++.||+..+....+. |-..+.++.+.+=
T Consensus 15 ~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~t--Vr~~~~rAlkkLR 68 (99)
T 3t72_q 15 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRER--IRQIEAKALRKLR 68 (99)
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHH--HHHHHHHHHHHHH
Confidence 367789999888887777 3899999987654433 5566666665553
No 21
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=20.59 E-value=3e+02 Score=24.71 Aligned_cols=90 Identities=10% Similarity=0.258 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHhhhcCchhh-hcCchh-HHHHHHHHHHHHHHHHHHH--------HHccC-cchhHHHHHHHHHHHHHHH
Q 041613 256 TLDELELFTDAVERWDTTTI-EQLPNY-MKLCFHALHNSINEMAFDA--------LRDQG-VGMVISYLKKAWADICKTY 324 (356)
Q Consensus 256 TleEl~~ft~aveRWD~~~~-~~Lpey-mk~~f~al~~~~~ei~~~~--------~~~~g-~~~~~~~l~~~w~~l~~a~ 324 (356)
+.+|++.|.+.+++|....+ -..|+. .+.++.++.+.++.++... ..+++ .+.++.++|. +..+|
T Consensus 67 ~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edF~~~f~~ll~~i~~~~~~~~L~~~fnd~~~s~~iv~~lR~----lta~~ 142 (234)
T 1tff_A 67 KSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRL----LTSAF 142 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHH----HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcccchhhHHHHHHH----HHHHH
Confidence 45899999999998854322 133554 4556666666666654311 11111 1113444444 45555
Q ss_pred HHH----HhHccCCCCCChHHHHhhhhhhc
Q 041613 325 LVE----AKSYNNGYIPTLQEYMENAWISI 350 (356)
Q Consensus 325 l~E----AkW~~~~~~Pt~eEYl~n~~iS~ 350 (356)
|++ -+-+-++-+ |+++|.+..+.++
T Consensus 143 i~~~~d~f~pFi~~~~-~~~~yC~~~ve~~ 171 (234)
T 1tff_A 143 IRNRADFFRHFIDEEM-DIKDFCTHEVEPM 171 (234)
T ss_dssp HHHTHHHHGGGSCTTS-CHHHHHHHHTSST
T ss_pred HHHCHHHHhhhhcCCC-CHHHHHHHHhhhh
Confidence 555 233333222 7999988554433
No 22
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=20.03 E-value=75 Score=20.22 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.5
Q ss_pred ccCCHHHHHHHHHHhhh
Q 041613 253 VYGTLDELELFTDAVER 269 (356)
Q Consensus 253 ~ygTleEl~~ft~aveR 269 (356)
+.||+|||+.+-+--++
T Consensus 10 vggtpeelkklkeeakk 26 (36)
T 2ki0_A 10 VGGTPEELKKLKEEAKK 26 (36)
T ss_dssp BCCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 68999999998775543
Done!