BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041614
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 136 DVVVATDGTGNFTKIMDVVLAAEDYNMKRFVIYIKRGVYKDS 177
+ VVA DGTG++ + + V AA D + R+VIY+KRG YK++
Sbjct: 4 NAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKEN 45
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 136 DVVVATDGTGNFTKIMDVVLAAEDYNMKRFVIYIKRGVYKD 176
+VVVA DG+G++ + + V AA + + R+VI IK GVY++
Sbjct: 8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRE 48
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 130 VNGVQGDVVVATDGTGNFTKIMDVVLAAEDYNMKRFVIYIKRGVYKD 176
VN Q + VV+T G+ ++ L + + F+I++K GVY +
Sbjct: 26 VNAAQYNAVVSTTPQGDEFSSINAALKSAPKDDTPFIIFLKNGVYTE 72
>pdb|3MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1N2C|B Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|D Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1L5H|B Chain B, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1M1N|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|F Chain F, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|H Chain H, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1Y|B Chain B, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|D Chain D, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|J Chain J, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|L Chain L, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|B Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|D Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|J Chain J, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|L Chain L, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|B Chain B, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|D Chain D, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|B Chain B, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|D Chain D, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|J Chain J, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|L Chain L, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|B Chain B, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|D Chain D, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|3K1A|B Chain B, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
pdb|3K1A|D Chain D, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
Length = 522
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 126 KFLLVNGVQGDVVVATDGTGNFTKIMDVVLAAEDYNMKRFVIYIKRGVY 174
KFLL G + ++ +G + K +D +LAA Y K +YI + ++
Sbjct: 380 KFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYG-KNATVYIGKDLW 427
>pdb|1G20|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1FP4|B Chain B, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|1FP4|D Chain D, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|3U7Q|B Chain B, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
pdb|3U7Q|D Chain D, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
Length = 523
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 126 KFLLVNGVQGDVVVATDGTGNFTKIMDVVLAAEDYNMKRFVIYIKRGVY 174
KFLL G + ++ +G + K +D +LAA Y K +YI + ++
Sbjct: 381 KFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYG-KNATVYIGKDLW 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,000,434
Number of Sequences: 62578
Number of extensions: 168656
Number of successful extensions: 303
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 5
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)