BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041616
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 132 bits (333), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 49 NITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKI 108
+I + + D DAI + WIDHN+L C +GLIDVT GST +TISNN F N K+
Sbjct: 139 SIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKV 198
Query: 109 KLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTI-GKAN 167
LLGHDD Y DK+MK+T+A+N FG N QRMPR R+G HV NN Y W Y I G +N
Sbjct: 199 MLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSN 258
Query: 168 LKYTEEQKCQVANAKSMRSLTSELRVSKCSRRSRC 202
E A ++S + ++ R+ C S C
Sbjct: 259 PTILSEGNSFTAPSESYKKEVTK-RIG-CESPSAC 291
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 56 RKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGH-- 113
+K D D I + + +WIDH T +G +D+ + S +T+S N F + DK+ L+G
Sbjct: 112 KKYDFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSD 171
Query: 114 -DDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLY 155
+D + K+T +N+F +N QRMPR+R G AHV NN Y
Sbjct: 172 KEDPEQAGQAYKVTYHHNYF-KNLIQRMPRIRFGMAHVFNNFY 213
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 19/116 (16%)
Query: 59 DRDAIRLVIALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNW 101
+ D+I + + +WIDHNT ++ +G +D+ S +TIS N
Sbjct: 188 EYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNV 247
Query: 102 FRNQDKIKLLGHDDGYIRDK-NMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYR 156
F N DK+ L+G D + D ++++T+ +N++ +N QR+PRVR G H+ NN Y
Sbjct: 248 FTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPRVRFGQVHIYNNYYE 302
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 49 NITLHKLRKIDRDAIRLVIALK-VWIDHNTLYK---------CQNGLIDVTRGSTDVTIS 98
N+++H +R+ + AI + K VWIDHN Y +GL+D+ R + +T+S
Sbjct: 109 NVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVS 168
Query: 99 NNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYR 156
N F N K L+GH D + K+T +N+F N N R+P +R+ H+ NN ++
Sbjct: 169 WNKFENHWKTMLVGHTDNASLAPD-KITYHHNYF-NNLNSRVPLIRYADVHMFNNYFK 224
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 29/147 (19%)
Query: 68 ALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNWFRNQDKIKL 110
A VWIDH T+ Y +G +D+ RGS VTISN+ DK L
Sbjct: 152 AHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTML 211
Query: 111 LGHDD-GYIRDKN-MKMTIAYNHFGRNCNQRMPRVRHGFAHVINN---------LYRKWT 159
+GH+D +DK + +T+ N F R +R PRVR+G H NN +YR
Sbjct: 212 IGHNDTNSAQDKGKLHVTLFNNVFNR-VTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQY 270
Query: 160 QYTIGKANLKYTEEQKCQVANAKSMRS 186
+ IG + +E +AN + ++
Sbjct: 271 SFGIGTSGSVLSEGNSFTIANLSASKA 297
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 29/147 (19%)
Query: 68 ALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNWFRNQDKIKL 110
A VWIDH T+ Y +G +D+ RGS VTISN+ DK L
Sbjct: 152 AHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTML 211
Query: 111 LGHDD--GYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINN---------LYRKWT 159
+GH D G + +T+ N F R +R PRVR+G H NN +YR
Sbjct: 212 IGHSDSNGSQDKGKLHVTLFNNVFNR-VTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQY 270
Query: 160 QYTIGKANLKYTEEQKCQVANAKSMRS 186
+ IG + +E +AN + ++
Sbjct: 271 SFGIGTSGSVLSEGNSFTIANLSASKA 297
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 70 KVWIDHNTLY----KCQ-------NGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI 118
K+W+DHNT++ KC +G ID+ +G VT+S N+ N K+ L G+ D
Sbjct: 128 KIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDT 187
Query: 119 RDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTI 163
++ + T +N F N R+P R G +H+ NN + T I
Sbjct: 188 KNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYFNNVTTSGI 231
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 70 KVWIDHNTLY----KCQ-------NGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI 118
K+W+DHNT++ KC +G ID+ +G VT+S N+ N K+ L G+ D
Sbjct: 128 KIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDT 187
Query: 119 RDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTI 163
++ + T +N F N R+P R G +H+ NN + T I
Sbjct: 188 KNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYFNNVTTSGI 231
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 70 KVWIDHNTLY----KCQ-------NGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI 118
K+W+DHNT++ KC +G ID+ +G VT+S N+ N K+ L G+ D
Sbjct: 128 KIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDT 187
Query: 119 RDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTI 163
++ + T +N F N R+P R G +H+ NN + T I
Sbjct: 188 KNSAARTTYHHNRF-ENVESRVPLQRRGLSHIYNNYFNNVTTSGI 231
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 61 DAIRLVIALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNWFR 103
D I + +WIDH T Y+ +G D + G+ +T+S N++
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 104 NQDKIKLLGHDDGYIRDKN-MKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWT--- 159
+ DK + G D D +K+T+ +N + +N QR PRVR G HV NN Y T
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSS 323
Query: 160 ------QYTIGKANLKYTEEQKCQVANAKSMRSLT 188
+ IGK++ Y + V + ++++
Sbjct: 324 SYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 358
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 61 DAIRLVIALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNWFR 103
D I + +WIDH T Y+ +G D + G+ +T+S N++
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 104 NQDKIKLLGHDDGYIRDKN-MKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWT--- 159
+ DK + G D D +K+T+ +N + +N Q+ PRVR G HV NN Y T
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPRVRFGQVHVYNNYYEGSTSSS 323
Query: 160 ------QYTIGKANLKYTEEQKCQVANAKSMRSLT 188
+ IGK++ Y + V + ++++
Sbjct: 324 SYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 358
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 61 DAIRLVIALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNWFR 103
D I + +WIDH T Y+ +G D + G+ +T+S N++
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 104 NQDKIKLLGHDDGYIRDKN-MKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWT--- 159
+ D + G D D +K+T+ +N + +N QR PRVR G HV NN Y T
Sbjct: 244 DHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSS 302
Query: 160 ------QYTIGKANLKYTEEQKCQVANAKSMRSLT 188
+ IGK++ Y + V + ++++
Sbjct: 303 SYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 337
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 29/163 (17%)
Query: 61 DAIRLVIALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNWFR 103
DA + + VW+DH T+ Y +G +D+ +GS VTIS + F
Sbjct: 134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFE 193
Query: 104 NQDKIKLLGHDD--GYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQY 161
DK L+GH D G +++T N F R +R PRVR G H NN+Y ++
Sbjct: 194 LHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDR-VTERAPRVRFGSIHAYNNVYLGDVKH 252
Query: 162 TI---------GKANLKYTEEQKCQVANAKSMRSLTSELRVSK 195
++ G + +E ++N KS+ E + K
Sbjct: 253 SVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKNPECSIVK 295
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 61 DAIRLVIALKVWIDHNTL-----------------YKCQNGLIDVTRGSTDVTISNNWFR 103
D I + +WIDH T Y+ +G D + G+ +T+S N++
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 104 NQDKIKLLGHDDGYIRDKN-MKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWT--- 159
+ DK + G D D +K+T+ +N + +N Q PRVR G HV NN Y T
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPRVRFGQVHVYNNYYEGSTSSS 302
Query: 160 ------QYTIGKANLKYTEEQKCQVANAKSMRSLT 188
+ IGK++ Y + V + ++++
Sbjct: 303 SYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 337
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 59 DRDAIRLVIALKVWIDHNTLYKCQN-------------GLIDVTRGSTDVTISNNWFRNQ 105
D D IR+ + VW+DHN L+ + +D+ S VT+S N+
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHG- 187
Query: 106 DKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLY 155
+K +G D D +T +N++ + N R+P R G H NNLY
Sbjct: 188 --VKKVGLDGSSSSDTGRNITYHHNYY-NDVNARLPLQRGGLVHAYNNLY 234
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 59 DRDAIRLVIALKVWIDHNTLYKCQN-------------GLIDVTRGSTDVTISNNWFRNQ 105
D D IR+ + VW+DHN L+ + +D+ S VT+S N+
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHG- 187
Query: 106 DKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLY 155
+K +G D D +T +N++ + N ++P R G H NNLY
Sbjct: 188 --VKKVGLDGSSSSDTGRNITYHHNYY-NDVNAKLPLQRGGLVHAYNNLY 234
>pdb|2RFT|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 344
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 6 GKDVVRYKVTDPGDDTINPKPGTLRYE-AILIPQKVW 41
G+ VV Y V PG K GT+ Y+ +L+PQKVW
Sbjct: 241 GRIVVDYMVQKPG------KTGTIAYQRGVLLPQKVW 271
>pdb|3BT6|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 342
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 6 GKDVVRYKVTDPGDDTINPKPGTLRYE-AILIPQKVW 41
G+ VV Y V PG K GT+ Y+ +L+PQKVW
Sbjct: 241 GRIVVDYMVQKPG------KTGTIAYQRGVLLPQKVW 271
>pdb|3BGD|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGD|B Chain B, Thiopurine S-Methyltransferase
pdb|3BGI|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGI|B Chain B, Thiopurine S-Methyltransferase
Length = 260
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 163 IGKANLKYTEEQKCQVANAKSMRSLTSELRVSKCS 197
+ NL YTEE ++A AK +S + + + CS
Sbjct: 115 FAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS 149
>pdb|2GB4|A Chain A, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
pdb|2GB4|B Chain B, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
Length = 252
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 163 IGKANLKYTEEQKCQVANAKSMRSLTSELRVSKCS 197
+ NL YTEE ++A AK +S + + + CS
Sbjct: 107 FAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS 141
>pdb|4FQJ|A Chain A, Influenza BFLORIDA42006 HEMAGGLUTININ FAB CR8071 COMPLEX
Length = 304
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 6 GKDVVRYKVTDPGDDTINPKPGTLRYE-AILIPQKVW 41
G+ VV Y + PG K GT+ Y+ +L+PQKVW
Sbjct: 213 GRIVVDYMMQKPG------KTGTIVYQRGVLLPQKVW 243
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 79 YKCQNGLIDVTRGSTDVTISNNW 101
Y+C+NG TRG+T S W
Sbjct: 274 YQCRNGFYPATRGNTAKCTSTGW 296
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 79 YKCQNGLIDVTRGSTDVTISNNW 101
Y+C+NG TRG+T S W
Sbjct: 274 YQCRNGFYPATRGNTAKCTSTGW 296
>pdb|1VL4|A Chain A, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
(Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
Resolution
pdb|1VL4|B Chain B, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
(Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
Resolution
Length = 447
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 79 YKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHD 114
Y +NG ++ G D+TIS N+ KI L+G+D
Sbjct: 392 YWVENG--EIAHGVEDITISGNFLDLLRKIVLVGND 425
>pdb|4FQK|A Chain A, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQK|C Chain C, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQM|A Chain A, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|C Chain C, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|E Chain E, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|G Chain G, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|I Chain I, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|K Chain K, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
Length = 347
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 6 GKDVVRYKVTDPGDDTINPKPGTLRYE-AILIPQKVW 41
G+ VV Y V G K GT+ Y+ IL+PQKVW
Sbjct: 244 GRIVVDYMVQKSG------KTGTITYQRGILLPQKVW 274
>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
Complement Factor H
Length = 312
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 79 YKCQNGLIDVTRGSTDVTISNNW 101
Y+C+NG TRG+T S W
Sbjct: 276 YQCRNGFYPATRGNTAKCTSTGW 298
>pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 60 RDAIRLVIALKVWIDHNT---LYKCQNGLI--DVTRGSTDVTISNNWFRNQDKIKLLGHD 114
RD + LK++ D N L NG I D R D+ I++NW+ N K K+LG D
Sbjct: 403 RDLKTYSVQLKLYDDKNASLGLVGTHNGQIGNDPNR---DILIASNWYFNHLKDKILGCD 459
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With N-Acetyl-
Galactosamine
Length = 469
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 60 RDAIRLVIALKVWIDHNT---LYKCQNGLI--DVTRGSTDVTISNNWFRNQDKIKLLGHD 114
RD + LK++ D N L NG I D R D+ I++NW+ N K K+LG D
Sbjct: 400 RDLKTYSVQLKLYDDKNASLGLVGTHNGQIGNDPNR---DILIASNWYFNHLKDKILGCD 456
>pdb|1DIW|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Galactose
Length = 441
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 60 RDAIRLVIALKVWIDHNT---LYKCQNGLI--DVTRGSTDVTISNNWFRNQDKIKLLGHD 114
RD + LK++ D N L NG I D R D+ I++NW+ N K K+LG D
Sbjct: 372 RDLKTYSVQLKLYDDKNASLGLVGTHNGQIGNDPNR---DILIASNWYFNHLKDKILGCD 428
>pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Complexed With Lactose
pdb|1YXW|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
pdb|1YYN|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
Length = 441
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 60 RDAIRLVIALKVWIDHNT---LYKCQNGLI--DVTRGSTDVTISNNWFRNQDKIKLLGHD 114
RD + LK++ D N L NG I D R D+ I++NW+ N K K+LG D
Sbjct: 372 RDLKTYSVQLKLYDDKNASLGLVGTHNGQIGNDPNR---DILIASNWYFNHLKDKILGCD 428
>pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Sialic
Acid
Length = 444
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 60 RDAIRLVIALKVWIDHNT---LYKCQNGLI--DVTRGSTDVTISNNWFRNQDKIKLLGHD 114
RD + LK++ D N L NG I D R D+ I++NW+ N K K+LG D
Sbjct: 375 RDLKTYSVQLKLYDDKNASLGLVGTHNGQIGNDPNR---DILIASNWYFNHLKDKILGCD 431
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,416,631
Number of Sequences: 62578
Number of extensions: 259907
Number of successful extensions: 552
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 36
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)