Query 041616
Match_columns 202
No_of_seqs 156 out of 780
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00656 Amb_all Amb_all dom 100.0 3E-40 6.5E-45 274.8 15.1 142 37-179 31-189 (190)
2 PF00544 Pec_lyase_C: Pectate 100.0 2E-41 4.4E-46 283.7 8.1 139 37-176 36-200 (200)
3 COG3866 PelB Pectate lyase [Ca 100.0 1.8E-40 3.8E-45 289.9 13.8 125 60-185 144-284 (345)
4 PLN03003 Probable polygalactur 97.6 0.00075 1.6E-08 63.5 11.1 84 57-144 185-269 (456)
5 PLN02218 polygalacturonase ADP 97.5 0.0016 3.5E-08 60.8 11.8 83 58-144 240-323 (431)
6 PLN02188 polygalacturonase/gly 97.5 0.0019 4.2E-08 59.8 12.1 82 58-143 203-285 (404)
7 PLN02793 Probable polygalactur 97.3 0.0025 5.3E-08 59.8 11.5 98 57-158 224-330 (443)
8 PLN02155 polygalacturonase 97.2 0.0024 5.2E-08 59.1 9.9 82 58-143 193-275 (394)
9 PF00295 Glyco_hydro_28: Glyco 97.0 0.0026 5.7E-08 57.0 8.0 84 57-144 139-223 (326)
10 TIGR03805 beta_helix_1 paralle 96.8 0.039 8.5E-07 49.4 13.3 105 58-164 105-248 (314)
11 PF13229 Beta_helix: Right han 96.5 0.032 7E-07 42.6 9.5 116 54-180 17-138 (158)
12 PF13229 Beta_helix: Right han 96.0 0.024 5.3E-07 43.3 6.4 114 61-185 1-118 (158)
13 TIGR03805 beta_helix_1 paralle 95.7 0.18 3.9E-06 45.1 11.7 82 41-132 58-148 (314)
14 PF14592 Chondroitinas_B: Chon 95.7 0.03 6.4E-07 52.4 6.8 72 69-143 131-218 (425)
15 PLN03010 polygalacturonase 95.3 0.29 6.2E-06 45.7 11.7 83 58-144 205-288 (409)
16 PF05048 NosD: Periplasmic cop 95.1 0.39 8.4E-06 40.4 11.1 86 61-157 80-167 (236)
17 PF05048 NosD: Periplasmic cop 92.4 2.5 5.4E-05 35.4 11.1 105 60-176 57-165 (236)
18 COG5434 PGU1 Endopygalactoruna 90.3 2.8 6E-05 40.6 10.2 101 38-144 237-376 (542)
19 PF14592 Chondroitinas_B: Chon 88.3 1.1 2.3E-05 42.2 5.7 36 124-160 246-285 (425)
20 PF08480 Disaggr_assoc: Disagg 87.0 2.4 5.2E-05 35.7 6.5 70 93-164 2-82 (198)
21 PF12708 Pectate_lyase_3: Pect 85.8 2.8 6.1E-05 33.9 6.4 90 60-159 112-221 (225)
22 PLN02793 Probable polygalactur 85.6 4.5 9.7E-05 38.2 8.3 77 56-136 245-330 (443)
23 smart00656 Amb_all Amb_all dom 83.8 11 0.00023 31.3 9.1 98 60-160 31-146 (190)
24 COG3866 PelB Pectate lyase [Ca 82.8 5.6 0.00012 36.1 7.3 145 2-160 49-231 (345)
25 PLN02155 polygalacturonase 81.3 11 0.00024 35.0 9.0 110 38-157 144-268 (394)
26 PLN02188 polygalacturonase/gly 77.9 19 0.00042 33.5 9.5 75 56-136 223-310 (404)
27 TIGR03808 RR_plus_rpt_1 twin-a 75.6 29 0.00064 33.0 10.0 22 63-84 183-204 (455)
28 PF00544 Pec_lyase_C: Pectate 75.4 32 0.0007 28.6 9.4 96 61-159 37-159 (200)
29 PLN03003 Probable polygalactur 74.7 23 0.0005 33.7 9.1 74 56-132 206-288 (456)
30 PF00295 Glyco_hydro_28: Glyco 73.3 10 0.00022 33.9 6.2 55 56-112 160-223 (326)
31 PLN03010 polygalacturonase 72.0 26 0.00057 32.8 8.7 57 56-114 176-237 (409)
32 TIGR03808 RR_plus_rpt_1 twin-a 71.6 23 0.00049 33.7 8.2 105 57-164 236-373 (455)
33 PLN02218 polygalacturonase ADP 71.5 21 0.00045 33.6 8.0 86 38-132 191-283 (431)
34 PF12708 Pectate_lyase_3: Pect 68.2 16 0.00034 29.5 5.8 52 74-137 169-221 (225)
35 TIGR03804 para_beta_helix para 62.4 22 0.00048 21.9 4.4 40 62-103 1-40 (44)
36 PF08480 Disaggr_assoc: Disagg 62.2 98 0.0021 26.2 11.2 137 55-194 11-180 (198)
37 COG5434 PGU1 Endopygalactoruna 57.8 42 0.00092 32.7 7.4 78 57-136 306-398 (542)
38 PF01696 Adeno_E1B_55K: Adenov 50.7 1.9E+02 0.0041 27.1 10.1 108 37-159 113-221 (386)
39 PLN02480 Probable pectinestera 46.9 2.3E+02 0.005 25.9 13.7 144 26-178 60-217 (343)
40 smart00710 PbH1 Parallel beta- 33.6 56 0.0012 16.6 2.5 14 70-83 3-16 (26)
41 PF07602 DUF1565: Protein of u 31.6 3.5E+02 0.0076 23.6 9.3 111 59-176 113-239 (246)
42 PF06355 Aegerolysin: Aegeroly 29.2 2.8E+02 0.0061 21.7 7.0 44 57-100 41-88 (131)
43 PRK03174 sspH acid-soluble spo 21.2 48 0.001 22.8 0.9 18 61-78 14-32 (59)
44 PRK01625 sspH acid-soluble spo 20.1 52 0.0011 22.6 0.9 18 61-78 14-32 (59)
No 1
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=3e-40 Score=274.76 Aligned_cols=142 Identities=42% Similarity=0.601 Sum_probs=126.6
Q ss_pred CCceEEEEeeCeEEEeeec------CCCCCCeEEeecCCeEEEecceeccC---------CcceEEeeeCCccEEEecce
Q 041616 37 PQKVWTTYRKHMNITLHKL------RKIDRDAIRLVIALKVWIDHNTLYKC---------QNGLIDVTRGSTDVTISNNW 101 (202)
Q Consensus 37 ~~p~~IvF~~~g~I~l~~I------~~~~~Dai~i~~~~nVwIDHctfs~~---------~Dg~id~~~~s~~VTiS~n~ 101 (202)
++++.|.-..+.+||...| ..+++|+|+++++++||||||+|+|+ .|+++|++.++++||||||+
T Consensus 31 g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 31 GGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECce
Confidence 6667766666777775555 23688999999999999999999998 89999999999999999999
Q ss_pred eecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCCCcccCCeEEEECceEECccceEEcccc--cccccCcceEec
Q 041616 102 FRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKAN--LKYTEEQKCQVA 179 (202)
Q Consensus 102 f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~~yaig~~~--~~y~~~~~f~~~ 179 (202)
|.+|+|++|+|++|+...+..++|||||||| +++.+|+||+|+|++|+|||||++|..||++.+. .+++|+|+|...
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~-~~~~~R~P~~r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYF-GNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEE-cCcccCCCcccCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999887655688999999999 8999999999999999999999999999988655 779999999754
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=2e-41 Score=283.74 Aligned_cols=139 Identities=37% Similarity=0.586 Sum_probs=115.1
Q ss_pred CCceEEE-EeeCeEEEeeecCC---------------CCCCeEEeecCCeEEEecceeccC--------CcceEEeeeCC
Q 041616 37 PQKVWTT-YRKHMNITLHKLRK---------------IDRDAIRLVIALKVWIDHNTLYKC--------QNGLIDVTRGS 92 (202)
Q Consensus 37 ~~p~~Iv-F~~~g~I~l~~I~~---------------~~~Dai~i~~~~nVwIDHctfs~~--------~Dg~id~~~~s 92 (202)
+.++.|. -..+.+||...|.. .++|+|+|++++|||||||+|+|+ .||++|++.++
T Consensus 36 ~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s 115 (200)
T PF00544_consen 36 GGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGS 115 (200)
T ss_dssp SSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESST
T ss_pred CceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCC
Confidence 5455555 45666666554433 578999999999999999999999 99999999999
Q ss_pred ccEEEecceeecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCCCcccCCeEEEECceEECccceEEcccc--ccc
Q 041616 93 TDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKAN--LKY 170 (202)
Q Consensus 93 ~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~~yaig~~~--~~y 170 (202)
++||||||+|++|+|++|+|++|....+.++++||||||| +++.+|+||+|+|.+|+|||||+++..||+++++ .++
T Consensus 116 ~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f-~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~ 194 (200)
T PF00544_consen 116 DNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF-ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVL 194 (200)
T ss_dssp EEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE-EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEE
T ss_pred ceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE-CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEE
Confidence 9999999999999999999999887767679999999999 9999999999999999999999999999998655 779
Q ss_pred ccCcce
Q 041616 171 TEEQKC 176 (202)
Q Consensus 171 ~~~~~f 176 (202)
+|+|+|
T Consensus 195 ~E~N~F 200 (200)
T PF00544_consen 195 VENNYF 200 (200)
T ss_dssp EES-EE
T ss_pred EECcCC
Confidence 999998
No 3
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=289.93 Aligned_cols=125 Identities=35% Similarity=0.514 Sum_probs=110.4
Q ss_pred CCeEEe-ecCCeEEEecceecc--------CCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCc-cCCCceeEEEEc
Q 041616 60 RDAIRL-VIALKVWIDHNTLYK--------CQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGY-IRDKNMKMTIAY 129 (202)
Q Consensus 60 ~Dai~i-~~~~nVwIDHctfs~--------~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~-~~d~~~~vT~hh 129 (202)
.|+|+| .+++|||||||+|+. ..||++|+++++++||||||+|++|+|++|+|.+|+. .+|++.+|||||
T Consensus 144 ~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hh 223 (345)
T COG3866 144 YDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHH 223 (345)
T ss_pred CCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEec
Confidence 499999 678999999999998 5899999999999999999999999999999999984 467889999999
Q ss_pred eEecCCCCCCCCcccCCeEEEECceEECcc--ceEEc--ccccccccCcceEe--cCCcchh
Q 041616 130 NHFGRNCNQRMPRVRHGFAHVINNLYRKWT--QYTIG--KANLKYTEEQKCQV--ANAKSMR 185 (202)
Q Consensus 130 N~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~--~yaig--~~~~~y~~~~~f~~--~~~s~v~ 185 (202)
||| .|+.||+||+|+|.+|+|||||+... .||++ .++.+|+|+|+|.. +|..+..
T Consensus 224 NyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~d 284 (345)
T COG3866 224 NYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLD 284 (345)
T ss_pred ccc-ccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCCCCceeee
Confidence 999 99999999999999999999999655 34444 45799999999987 4444433
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.57 E-value=0.00075 Score=63.46 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=63.2
Q ss_pred CCCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCcc-CCCceeEEEEceEecCC
Q 041616 57 KIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI-RDKNMKMTIAYNHFGRN 135 (202)
Q Consensus 57 ~~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~-~d~~~~vT~hhN~f~~~ 135 (202)
....|||.+.+++||+|.+|.++.+ |..+.++.++++|+|+++.+.. ..+.-||+--... .+.-.+|++.++.| .+
T Consensus 185 spNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~-~~ 261 (456)
T PLN03003 185 SPNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNF-RG 261 (456)
T ss_pred CCCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEE-EC
Confidence 4567999999999999999998755 7788889999999999999864 2356677643222 23347899999999 55
Q ss_pred CCCCCCccc
Q 041616 136 CNQRMPRVR 144 (202)
Q Consensus 136 ~~~R~Pr~r 144 (202)
+ .+.=|++
T Consensus 262 T-~nGvRIK 269 (456)
T PLN03003 262 T-MNGARIK 269 (456)
T ss_pred C-CcEEEEE
Confidence 5 4445664
No 5
>PLN02218 polygalacturonase ADPG
Probab=97.46 E-value=0.0016 Score=60.81 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=62.9
Q ss_pred CCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCcc-CCCceeEEEEceEecCCC
Q 041616 58 IDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI-RDKNMKMTIAYNHFGRNC 136 (202)
Q Consensus 58 ~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~-~d~~~~vT~hhN~f~~~~ 136 (202)
...|||.+.+++||.|.+|.++.+ |..+.++.++++|+|++|.+.. ..+.-||+--.+. .+.-.+|++.++.| .++
T Consensus 240 pNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~t 316 (431)
T PLN02218 240 PNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SGT 316 (431)
T ss_pred CCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ecC
Confidence 467999999999999999999866 7789999999999999999953 3346688632211 22346899999999 554
Q ss_pred CCCCCccc
Q 041616 137 NQRMPRVR 144 (202)
Q Consensus 137 ~~R~Pr~r 144 (202)
.+.=|++
T Consensus 317 -~nGvRIK 323 (431)
T PLN02218 317 -DNGVRIK 323 (431)
T ss_pred -CcceEEe
Confidence 4555554
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.46 E-value=0.0019 Score=59.82 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCC-ccCCCceeEEEEceEecCCC
Q 041616 58 IDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDG-YIRDKNMKMTIAYNHFGRNC 136 (202)
Q Consensus 58 ~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~-~~~d~~~~vT~hhN~f~~~~ 136 (202)
...|+|.+..++||+|.+|.+..+.| .+.++.++++|+|+++.+.. ..++-||+--. .....-.+|++.++.| .++
T Consensus 203 pNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~-~~t 279 (404)
T PLN02188 203 PNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTF-TGT 279 (404)
T ss_pred CCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEE-ECC
Confidence 46799999999999999999987755 88888899999999998853 33566776221 1112346899999999 554
Q ss_pred CCCCCcc
Q 041616 137 NQRMPRV 143 (202)
Q Consensus 137 ~~R~Pr~ 143 (202)
.+.=|+
T Consensus 280 -~~Giri 285 (404)
T PLN02188 280 -TNGIRI 285 (404)
T ss_pred -CcEEEE
Confidence 344444
No 7
>PLN02793 Probable polygalacturonase
Probab=97.34 E-value=0.0025 Score=59.81 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=68.5
Q ss_pred CCCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCc-cCCCceeEEEEceEecCC
Q 041616 57 KIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGY-IRDKNMKMTIAYNHFGRN 135 (202)
Q Consensus 57 ~~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~-~~d~~~~vT~hhN~f~~~ 135 (202)
....|||.+.+++||+|.+|.+.. .|..+.++.++++|+|++|.+..- .+.-||+--.. ....-.+|++.++.| .+
T Consensus 224 spNTDGIdi~~s~nV~I~n~~I~~-gDDcIaik~~s~nI~I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~-~~ 300 (443)
T PLN02793 224 SPNTDGIHISASRGVVIKDSIVRT-GDDCISIVGNSSRIKIRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFL-SN 300 (443)
T ss_pred CCCCCcEeeeccceEEEEeCEEeC-CCCeEEecCCcCCEEEEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEE-eC
Confidence 356799999999999999999974 577888888899999999998642 24667763211 112346799999999 55
Q ss_pred CCCCCCccc-----CC---eEEEECceEECc
Q 041616 136 CNQRMPRVR-----HG---FAHVINNLYRKW 158 (202)
Q Consensus 136 ~~~R~Pr~r-----~G---~~hv~NN~~~n~ 158 (202)
+ .+.=|++ .| .+.+-|-...+.
T Consensus 301 t-~~GirIKt~~g~~G~v~nItf~ni~m~nv 330 (443)
T PLN02793 301 T-DNGVRIKTWQGGSGNASKITFQNIFMENV 330 (443)
T ss_pred C-CceEEEEEeCCCCEEEEEEEEEeEEEecC
Confidence 5 3455553 12 345555555553
No 8
>PLN02155 polygalacturonase
Probab=97.23 E-value=0.0024 Score=59.06 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=61.6
Q ss_pred CCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCc-cCCCceeEEEEceEecCCC
Q 041616 58 IDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGY-IRDKNMKMTIAYNHFGRNC 136 (202)
Q Consensus 58 ~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~-~~d~~~~vT~hhN~f~~~~ 136 (202)
...|||.+..++||+|..|.+..+.| .+.++.++++|+|++|.+.. ..++-||+--.+ ....-.+|++.++.| .++
T Consensus 193 ~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~-~~t 269 (394)
T PLN02155 193 PNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVF-TGS 269 (394)
T ss_pred CCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEE-eCC
Confidence 45699999999999999999987755 77888889999999998874 235668874211 122346899999999 554
Q ss_pred CCCCCcc
Q 041616 137 NQRMPRV 143 (202)
Q Consensus 137 ~~R~Pr~ 143 (202)
.|.=|+
T Consensus 270 -~~GirI 275 (394)
T PLN02155 270 -QNGVRI 275 (394)
T ss_pred -CcEEEE
Confidence 344445
No 9
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.04 E-value=0.0026 Score=56.96 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCcc-CCCceeEEEEceEecCC
Q 041616 57 KIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI-RDKNMKMTIAYNHFGRN 135 (202)
Q Consensus 57 ~~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~-~d~~~~vT~hhN~f~~~ 135 (202)
....|+|.+.+++||.|++|.+..+ |..+.++.++.+|+|++|.|.. ..++-+|+--... +..-.+|+|.++.| .+
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i-~~ 215 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI-IN 215 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE-ES
T ss_pred CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe-ec
Confidence 3557999999999999999999765 8888888877899999999974 2345666532211 11125899999999 55
Q ss_pred CCCCCCccc
Q 041616 136 CNQRMPRVR 144 (202)
Q Consensus 136 ~~~R~Pr~r 144 (202)
+ .|.-|++
T Consensus 216 t-~~gi~iK 223 (326)
T PF00295_consen 216 T-DNGIRIK 223 (326)
T ss_dssp E-SEEEEEE
T ss_pred c-ceEEEEE
Confidence 4 4665553
No 10
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.77 E-value=0.039 Score=49.37 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=66.2
Q ss_pred CCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCC---------------------
Q 041616 58 IDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDG--------------------- 116 (202)
Q Consensus 58 ~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~--------------------- 116 (202)
...++|.+..++++-|.+|.++...|--+-+. .+++++|++|.+.+-..+..+-.+..
T Consensus 105 ~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~-~s~~~~v~nN~~~~n~~GI~i~~S~~~~v~~N~~~~N~~Gi~v~~~p 183 (314)
T TIGR03805 105 NGAYGIYPVESTNVLVEDSYVRGASDAGIYVG-QSQNIVVRNNVAEENVAGIEIENSQNADVYNNIATNNTGGILVFDLP 183 (314)
T ss_pred CCcceEEEeccCCEEEECCEEECCCcccEEEC-CCCCeEEECCEEccCcceEEEEecCCcEEECCEEeccceeEEEeecC
Confidence 45678888888889999999888777555553 46788888887764333322222211
Q ss_pred -ccCCCceeEEEEceEecCCCCCCC-----------Cccc------CCeEEEECceEECccceEEc
Q 041616 117 -YIRDKNMKMTIAYNHFGRNCNQRM-----------PRVR------HGFAHVINNLYRKWTQYTIG 164 (202)
Q Consensus 117 -~~~d~~~~vT~hhN~f~~~~~~R~-----------Pr~r------~G~~hv~NN~~~n~~~yaig 164 (202)
...-...++.+++|.| .++...+ |.-+ .-.+.++||.|++....++.
T Consensus 184 ~~~~~~s~~~~v~~N~i-~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~ 248 (314)
T TIGR03805 184 GLPQPGGSNVRVFDNII-FDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVL 248 (314)
T ss_pred CCCcCCccceEEECCEE-ECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEE
Confidence 0001235899999999 6664432 1111 02579999999987655543
No 11
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.50 E-value=0.032 Score=42.57 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=61.6
Q ss_pred ecCCCCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCccCCCceeEEEEceEec
Q 041616 54 KLRKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFG 133 (202)
Q Consensus 54 ~I~~~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~ 133 (202)
.|....+++|.+.+...+.|+.|+|.+ ....+.+. +..++++++|.|.+...+..+-. ...+++.+|.|
T Consensus 17 ~i~~~~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~-~~~~~~i~~~~~~~~~~~i~~~~--------~~~~~i~~~~i- 85 (158)
T PF13229_consen 17 TISNNGGDGIHVSGSSNITIENCTISN-GGYGIYVS-GGSNVTISNNTISDNGSGIYVSG--------SSNITIENNRI- 85 (158)
T ss_dssp EEESSSSECEEE-SSCESEEES-EEES-STTSEEEE-CCES-EEES-EEES-SEEEECCS---------CS-EEES-EE-
T ss_pred EEEeCCCeEEEEEcCCCeEEECeEEEC-CCcEEEEe-cCCCeEEECeEEEEccceEEEEe--------cCCceecCcEE-
Confidence 345667888888888888888888888 44445543 34788888888887764433332 13567777777
Q ss_pred CCCCCCCCccc--CCeEEEECceEECccceE---Eccc-ccccccCcceEecC
Q 041616 134 RNCNQRMPRVR--HGFAHVINNLYRKWTQYT---IGKA-NLKYTEEQKCQVAN 180 (202)
Q Consensus 134 ~~~~~R~Pr~r--~G~~hv~NN~~~n~~~ya---ig~~-~~~y~~~~~f~~~~ 180 (202)
.++..-.=.+. ...+.+.||.+.+...++ .+.. .....+.+.|....
T Consensus 86 ~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 86 ENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG 138 (158)
T ss_dssp ECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred EcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence 55543332232 235677777777655332 2222 24444555555444
No 12
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=95.99 E-value=0.024 Score=43.25 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=71.3
Q ss_pred CeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCC
Q 041616 61 DAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRM 140 (202)
Q Consensus 61 Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~ 140 (202)
|||.+.+..++-|+.|+|.......+.+. +...++|.+|.|.+...++.+... ..+++-.|.| .+.. +.
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~~-~~~~~~i~n~~i~~~~~gi~~~~~--------~~~~i~~~~~-~~~~-~~ 69 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHVS-GSSNITIENCTISNGGYGIYVSGG--------SNVTISNNTI-SDNG-SG 69 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE--SSCESEEES-EEESSTTSEEEECC--------ES-EEES-EE-ES-S-EE
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEEE-cCCCeEEECeEEECCCcEEEEecC--------CCeEEECeEE-EEcc-ce
Confidence 68999999999999999999877777774 455699999999984444444322 4689999999 5555 44
Q ss_pred CcccC-CeEEEECceEECccceEEcc---cccccccCcceEecCCcchh
Q 041616 141 PRVRH-GFAHVINNLYRKWTQYTIGK---ANLKYTEEQKCQVANAKSMR 185 (202)
Q Consensus 141 Pr~r~-G~~hv~NN~~~n~~~yaig~---~~~~y~~~~~f~~~~~s~v~ 185 (202)
+.+.. ..+.+.+|.+++...+++-. ....-.+++.|...+...+.
T Consensus 70 i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~ 118 (158)
T PF13229_consen 70 IYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIY 118 (158)
T ss_dssp EECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCE
T ss_pred EEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEE
Confidence 54543 47899999999987766532 33344466666655544433
No 13
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=95.72 E-value=0.18 Score=45.15 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=58.4
Q ss_pred EEEEeeCeEEEeeecCCCCCCeEEeecCCeEEEecceeccCC--------cceEEeeeCCccEEEecceeec-CCeeeee
Q 041616 41 WTTYRKHMNITLHKLRKIDRDAIRLVIALKVWIDHNTLYKCQ--------NGLIDVTRGSTDVTISNNWFRN-QDKIKLL 111 (202)
Q Consensus 41 ~IvF~~~g~I~l~~I~~~~~Dai~i~~~~nVwIDHctfs~~~--------Dg~id~~~~s~~VTiS~n~f~~-h~k~~li 111 (202)
.++-..+.+|+...|..+.+++|.+.+++++-|.+|.+.|.. +| +.. ..+.+++|.+|.++. .+.+..+
T Consensus 58 i~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 58 LLVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred EEEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEECCCcccEEE
Confidence 344556666665556677789999999999999999998653 33 333 358999999999986 3446666
Q ss_pred CCCCCccCCCceeEEEEceEe
Q 041616 112 GHDDGYIRDKNMKMTIAYNHF 132 (202)
Q Consensus 112 G~~d~~~~d~~~~vT~hhN~f 132 (202)
+.+. ++++.+|.+
T Consensus 136 ~~s~--------~~~v~nN~~ 148 (314)
T TIGR03805 136 GQSQ--------NIVVRNNVA 148 (314)
T ss_pred CCCC--------CeEEECCEE
Confidence 6553 356666666
No 14
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=95.71 E-value=0.03 Score=52.36 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=31.2
Q ss_pred CeEEEecceeccC--CcceEEee-------eCCccEEEecceeec-------CCeeeeeCCCCCccCCCceeEEEEceEe
Q 041616 69 LKVWIDHNTLYKC--QNGLIDVT-------RGSTDVTISNNWFRN-------QDKIKLLGHDDGYIRDKNMKMTIAYNHF 132 (202)
Q Consensus 69 ~nVwIDHctfs~~--~Dg~id~~-------~~s~~VTiS~n~f~~-------h~k~~liG~~d~~~~d~~~~vT~hhN~f 132 (202)
+|-=||||.|..- ..-.+-+. ..+.+.+|.+|+|.+ ...++-||.+.... ...+.++-+|||
T Consensus 131 ~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~--~~s~t~Ve~NlF 208 (425)
T PF14592_consen 131 KHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSM--SDSNTTVENNLF 208 (425)
T ss_dssp -S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE
T ss_pred cCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccc--cccceeeecchh
Confidence 3334699999862 22233332 234588999999984 45567777764322 235789999999
Q ss_pred cCCCCCCCCcc
Q 041616 133 GRNCNQRMPRV 143 (202)
Q Consensus 133 ~~~~~~R~Pr~ 143 (202)
.+|++-.=-+
T Consensus 209 -e~cdGE~EII 218 (425)
T PF14592_consen 209 -ERCDGEVEII 218 (425)
T ss_dssp -EEE-SSSEEE
T ss_pred -hhcCCceeEE
Confidence 8888764333
No 15
>PLN03010 polygalacturonase
Probab=95.27 E-value=0.29 Score=45.66 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=58.5
Q ss_pred CCCCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCc-cCCCceeEEEEceEecCCC
Q 041616 58 IDRDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGY-IRDKNMKMTIAYNHFGRNC 136 (202)
Q Consensus 58 ~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~-~~d~~~~vT~hhN~f~~~~ 136 (202)
...|||.+..+++|+|..|.+..+ |..+.++.++++++|.++.... ..+.-||+--.. ..+.-.+|++.++.| .++
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i-~~t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTF-NQT 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEE-eCC
Confidence 567999999999999999988766 7888888888888887666642 224556763221 112346899999999 554
Q ss_pred CCCCCccc
Q 041616 137 NQRMPRVR 144 (202)
Q Consensus 137 ~~R~Pr~r 144 (202)
.+.=|++
T Consensus 282 -~~GirIK 288 (409)
T PLN03010 282 -TNGARIK 288 (409)
T ss_pred -CcceEEE
Confidence 3444553
No 16
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=95.08 E-value=0.39 Score=40.35 Aligned_cols=86 Identities=24% Similarity=0.169 Sum_probs=57.9
Q ss_pred CeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCC
Q 041616 61 DAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRM 140 (202)
Q Consensus 61 Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~ 140 (202)
++|.+..+.+..|..++|+....|. -+. ++...||+.|.|.+...++.+-.+ .+.++.+|.| .++..-.
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI-~l~-~s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i-~~n~~~G 148 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGI-YLY-GSSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTI-SNNTDYG 148 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceE-EEe-eCCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEE-eCCCccc
Confidence 7777877776688888888777744 433 466688888888876666666543 2468889999 5664433
Q ss_pred Cc-cc-CCeEEEECceEEC
Q 041616 141 PR-VR-HGFAHVINNLYRK 157 (202)
Q Consensus 141 Pr-~r-~G~~hv~NN~~~n 157 (202)
-. +. .....+++|.|.|
T Consensus 149 i~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 149 IYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred eEEeccCCCCEEECCCccC
Confidence 33 22 2357888888844
No 17
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=92.38 E-value=2.5 Score=35.42 Aligned_cols=105 Identities=22% Similarity=0.110 Sum_probs=61.8
Q ss_pred CCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCC
Q 041616 60 RDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQR 139 (202)
Q Consensus 60 ~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R 139 (202)
..+|.+..++++-|.-|+|+....|..- .. +.+.+|+.|.|.+...+.++-.+. ..++..|.| . ....
T Consensus 57 ~~GI~~~~s~~~~i~~n~i~~n~~Gi~l-~~-s~~~~I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i-~-~~~~ 124 (236)
T PF05048_consen 57 RYGIHLMGSSNNTIENNTISNNGYGIYL-MG-SSNNTISNNTISNNGYGIYLYGSS--------NNTISNNTI-S-NNGY 124 (236)
T ss_pred CeEEEEEccCCCEEEeEEEEccCCCEEE-Ec-CCCcEEECCEecCCCceEEEeeCC--------ceEEECcEE-e-CCCE
Confidence 5566666666666777777766655433 22 333477777777655555544332 367888888 4 3333
Q ss_pred CCcccC-CeEEEECceEECccceEEc---ccccccccCcce
Q 041616 140 MPRVRH-GFAHVINNLYRKWTQYTIG---KANLKYTEEQKC 176 (202)
Q Consensus 140 ~Pr~r~-G~~hv~NN~~~n~~~yaig---~~~~~y~~~~~f 176 (202)
.-.+.. ....+.+|.+.+...|++- .+.......|.|
T Consensus 125 GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 125 GIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred EEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 333433 4677888888877666655 333444455555
No 18
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=90.27 E-value=2.8 Score=40.62 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=68.8
Q ss_pred CceEEEEeeCeEEEeeec----------------------------CCCCCCeEEeecCCeEEEecceeccCCcceEEee
Q 041616 38 QKVWTTYRKHMNITLHKL----------------------------RKIDRDAIRLVIALKVWIDHNTLYKCQNGLIDVT 89 (202)
Q Consensus 38 ~p~~IvF~~~g~I~l~~I----------------------------~~~~~Dai~i~~~~nVwIDHctfs~~~Dg~id~~ 89 (202)
.|+.+.|...-.+.+.++ .....|+|.+++++||-|+-|.|+.+.| .+-++
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~ik 315 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIK 315 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEecCCc-eEEee
Confidence 688999988887776642 1225789999999999999999998433 33332
Q ss_pred -----------eCCccEEEecceeecCCeeeeeCCCCCccCCCceeEEEEceEecCCCCCCCCccc
Q 041616 90 -----------RGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVR 144 (202)
Q Consensus 90 -----------~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r 144 (202)
..+.+|+|++|+|..-.-+..+|+.-.. +-+.|++=.|.| .+ ..|.=|++
T Consensus 316 sg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~g---gv~ni~ved~~~-~~-~d~GLRik 376 (542)
T COG5434 316 SGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGG---GVQNITVEDCVM-DN-TDRGLRIK 376 (542)
T ss_pred cccCCcccccccccccEEEecceecccccceEeeeecCC---ceeEEEEEeeee-cc-Ccceeeee
Confidence 3356899999999854344444432211 236788888888 44 56666663
No 19
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=88.26 E-value=1.1 Score=42.19 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=16.3
Q ss_pred eEEEEceEecCCCCCC--CCccc-CCeEE-EECceEECccc
Q 041616 124 KMTIAYNHFGRNCNQR--MPRVR-HGFAH-VINNLYRKWTQ 160 (202)
Q Consensus 124 ~vT~hhN~f~~~~~~R--~Pr~r-~G~~h-v~NN~~~n~~~ 160 (202)
+-|+..|+| -....+ .+-+| .|.-| ++||||++...
T Consensus 246 ~n~V~gN~F-iGng~~~~tGGIRIi~~~H~I~nNY~~gl~g 285 (425)
T PF14592_consen 246 RNTVEGNVF-IGNGVKEGTGGIRIIGEGHTIYNNYFEGLTG 285 (425)
T ss_dssp S-EEES-EE-EE-SSSS-B--EEE-SBS-EEES-EEEESSB
T ss_pred CceEeccEE-ecCCCcCCCCceEEecCCcEEEcceeecccc
Confidence 457777777 444432 35555 34433 56888887543
No 20
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.02 E-value=2.4 Score=35.73 Aligned_cols=70 Identities=27% Similarity=0.357 Sum_probs=45.8
Q ss_pred ccEEEecceeecCC--eeeeeCCCCCccCCCceeEEEEceEecCCCCCCCCccc--CC-------eEEEECceEECccce
Q 041616 93 TDVTISNNWFRNQD--KIKLLGHDDGYIRDKNMKMTIAYNHFGRNCNQRMPRVR--HG-------FAHVINNLYRKWTQY 161 (202)
Q Consensus 93 ~~VTiS~n~f~~h~--k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r--~G-------~~hv~NN~~~n~~~y 161 (202)
++|-|=+|.+.+-. ---|+|....+..+....|-+|||.| .. .+.+|.+. .| ..-+.||+|+..-..
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~f-Y~-tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIF-YD-TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEe-ec-CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 45777788887642 23467775555556667899999999 44 45566664 33 246789999875444
Q ss_pred EEc
Q 041616 162 TIG 164 (202)
Q Consensus 162 aig 164 (202)
||.
T Consensus 80 ai~ 82 (198)
T PF08480_consen 80 AIA 82 (198)
T ss_pred eEE
Confidence 443
No 21
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=85.76 E-value=2.8 Score=33.95 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=48.7
Q ss_pred CCeEEeecCCeEEEecceeccCCcceEEeee-------CC---ccEEE---------ecceeecCCeeeeeCCCCCccCC
Q 041616 60 RDAIRLVIALKVWIDHNTLYKCQNGLIDVTR-------GS---TDVTI---------SNNWFRNQDKIKLLGHDDGYIRD 120 (202)
Q Consensus 60 ~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~-------~s---~~VTi---------S~n~f~~h~k~~liG~~d~~~~d 120 (202)
.++|.+..++++||++|++.......+.+.. ++ .++.+ +++.+.....+...+
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------- 183 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFNGGDNGIILG-------- 183 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEEESSSCSEECE--------
T ss_pred ceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccccCCCceeEee--------
Confidence 4678888899999999999976444444321 00 02222 222222222221111
Q ss_pred CceeEEEEceEecCCCCCCCCcccC-CeEEEECceEECcc
Q 041616 121 KNMKMTIAYNHFGRNCNQRMPRVRH-GFAHVINNLYRKWT 159 (202)
Q Consensus 121 ~~~~vT~hhN~f~~~~~~R~Pr~r~-G~~hv~NN~~~n~~ 159 (202)
...+++++|.| .+...+.=.+.. ..+.+-||.+.++.
T Consensus 184 -~~~~~i~n~~~-~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 184 -NNNITISNNTF-EGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp -EEEEEEECEEE-ESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred -cceEEEEeEEE-CCccceeEEEECCeEEEEEeEEEECCc
Confidence 24788888888 443333333332 35777888887754
No 22
>PLN02793 Probable polygalacturonase
Probab=85.58 E-value=4.5 Score=38.16 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=51.2
Q ss_pred CCCCCCeEEee-cCCeEEEecceeccCCcceEEee--------eCCccEEEecceeecCCeeeeeCCCCCccCCCceeEE
Q 041616 56 RKIDRDAIRLV-IALKVWIDHNTLYKCQNGLIDVT--------RGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMT 126 (202)
Q Consensus 56 ~~~~~Dai~i~-~~~nVwIDHctfs~~~Dg~id~~--------~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT 126 (202)
-..++|+|.|. +++||.|..|++..+. | +.+. .+..+|||.+|.|.+...+.-|-.-+... -.-.+||
T Consensus 245 I~~gDDcIaik~~s~nI~I~n~~c~~Gh-G-isIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~-G~v~nIt 321 (443)
T PLN02793 245 VRTGDDCISIVGNSSRIKIRNIACGPGH-G-ISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGS-GNASKIT 321 (443)
T ss_pred EeCCCCeEEecCCcCCEEEEEeEEeCCc-c-EEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCC-EEEEEEE
Confidence 46789999996 6899999999987653 3 3332 23468999999999876665553322110 0125677
Q ss_pred EEceEecCCC
Q 041616 127 IAYNHFGRNC 136 (202)
Q Consensus 127 ~hhN~f~~~~ 136 (202)
|-+-.+ .+.
T Consensus 322 f~ni~m-~nv 330 (443)
T PLN02793 322 FQNIFM-ENV 330 (443)
T ss_pred EEeEEE-ecC
Confidence 777666 443
No 23
>smart00656 Amb_all Amb_all domain.
Probab=83.83 E-value=11 Score=31.29 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCeEEeecCCeEEEecceeccCCc------ceEEeeeCCccEEEecceeecCC-eeeeeCCCCCcc--CCCceeEEEEce
Q 041616 60 RDAIRLVIALKVWIDHNTLYKCQN------GLIDVTRGSTDVTISNNWFRNQD-KIKLLGHDDGYI--RDKNMKMTIAYN 130 (202)
Q Consensus 60 ~Dai~i~~~~nVwIDHctfs~~~D------g~id~~~~s~~VTiS~n~f~~h~-k~~liG~~d~~~--~d~~~~vT~hhN 130 (202)
+-+|.+.+++||+|-+.+|....+ ..+.+ .++++|=|-.|.|+... .+.--...|... ......+|+-.|
T Consensus 31 g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~-~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~ 109 (190)
T smart00656 31 GGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISI-DGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNN 109 (190)
T ss_pred eeEEEEEecceEEEeCCEEECCccCCCCCCCEEEE-eCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECc
Confidence 346777778999999999997533 35555 45788888888887530 000000011111 112367999999
Q ss_pred EecCCCCCCCCcccCC---------eEEEECceEECccc
Q 041616 131 HFGRNCNQRMPRVRHG---------FAHVINNLYRKWTQ 160 (202)
Q Consensus 131 ~f~~~~~~R~Pr~r~G---------~~hv~NN~~~n~~~ 160 (202)
+| .+ ....=.+..+ .+=+.+|||.+...
T Consensus 110 ~f-~~-h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~ 146 (190)
T smart00656 110 YF-HN-HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQ 146 (190)
T ss_pred eE-ec-CCEEEEEccCCCccccccceEEEECcEEcCccc
Confidence 99 42 2222222221 47788999988544
No 24
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=82.79 E-value=5.6 Score=36.11 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=96.9
Q ss_pred CCCCCCcEEEEEEcCCCCCCCCCCCCchhhhhhhCCCceEEEEeeCeEEEee---e------------c------CCCCC
Q 041616 2 TNNVGKDVVRYKVTDPGDDTINPKPGTLRYEAILIPQKVWTTYRKHMNITLH---K------------L------RKIDR 60 (202)
Q Consensus 2 tGGrgG~v~~y~VT~l~D~~~~p~~GsLR~av~~~~~p~~IvF~~~g~I~l~---~------------I------~~~~~ 60 (202)
|||.||++ +.|++-+| |.-.+.. .+|.+++--+.|+|... . | ...-+
T Consensus 49 tGG~~g~~--v~v~ta~~---------l~~~~sa-~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g 116 (345)
T COG3866 49 TGGSGGDI--VTVRTAND---------LETYLSA-SGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVG 116 (345)
T ss_pred ccCCCCcE--EEEeeHHH---------HHHHhhc-cCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEe
Confidence 79999999 99998777 3445555 66776666666766544 1 1 12225
Q ss_pred CeEEeecCCeEEEecceeccCC-----cceEEeeeCCccEEEecceeecCCeeeeeCCCCCcc--CCCceeEEEEceEec
Q 041616 61 DAIRLVIALKVWIDHNTLYKCQ-----NGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI--RDKNMKMTIAYNHFG 133 (202)
Q Consensus 61 Dai~i~~~~nVwIDHctfs~~~-----Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~--~d~~~~vT~hhN~f~ 133 (202)
-+|.|+.+.||+|--.+|.... +..|.+..++.+|=|-+|-|..|....---+.|+.. ......||+-.|+|
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f- 195 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF- 195 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee-
Confidence 5788899999999999999765 456777778899999999998765431111222221 22357899999999
Q ss_pred CCCCCCCCccc--------CC--eEEEECceEECccc
Q 041616 134 RNCNQRMPRVR--------HG--FAHVINNLYRKWTQ 160 (202)
Q Consensus 134 ~~~~~R~Pr~r--------~G--~~hv~NN~~~n~~~ 160 (202)
++... .-.+. .| .+-+-+|+|.|...
T Consensus 196 hdh~K-ssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q 231 (345)
T COG3866 196 HDHDK-SSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ 231 (345)
T ss_pred ecCCe-eeeeccCCcccccCCceeEEEeccccccccc
Confidence 44332 22222 23 35667999998644
No 25
>PLN02155 polygalacturonase
Probab=81.34 E-value=11 Score=34.96 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=75.1
Q ss_pred CceEEEEeeCeEEEeeec--CCCCCCeEEeecCCeEEEecceeccC-----CcceEEeeeCCccEEEecceeecCCeeee
Q 041616 38 QKVWTTYRKHMNITLHKL--RKIDRDAIRLVIALKVWIDHNTLYKC-----QNGLIDVTRGSTDVTISNNWFRNQDKIKL 110 (202)
Q Consensus 38 ~p~~IvF~~~g~I~l~~I--~~~~~Dai~i~~~~nVwIDHctfs~~-----~Dg~id~~~~s~~VTiS~n~f~~h~k~~l 110 (202)
.|+.|.|...-.+.+++| ...+.=.|.+.+++||.|++.++... .| -+|+ ..+++|+|++|.|...+-+..
T Consensus 144 ~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtD-Gidi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 144 GVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTD-GFHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred cccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCC-cccc-ccceeEEEEeeEEecCCceEE
Confidence 356677766666666655 56677778888999999999999653 34 3565 358899999999998877877
Q ss_pred eCCCCCccCCCceeEEEEceEecCC-------CCCCCCc-ccCCeEEEECceEEC
Q 041616 111 LGHDDGYIRDKNMKMTIAYNHFGRN-------CNQRMPR-VRHGFAHVINNLYRK 157 (202)
Q Consensus 111 iG~~d~~~~d~~~~vT~hhN~f~~~-------~~~R~Pr-~r~G~~hv~NN~~~n 157 (202)
+++.. .+|++.++.+ .. ...+.|. -..-.+.+.|+.+.+
T Consensus 222 ik~gs-------~nI~I~n~~c-~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 222 IGPGT-------RNFLITKLAC-GPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred cCCCC-------ceEEEEEEEE-ECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 77542 3677777766 22 1222221 112257888888876
No 26
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=77.85 E-value=19 Score=33.51 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=50.0
Q ss_pred CCCCCCeEEee-cCCeEEEecceeccCCcceEEe--------eeCCccEEEecceeecCCeeeeeC----CCCCccCCCc
Q 041616 56 RKIDRDAIRLV-IALKVWIDHNTLYKCQNGLIDV--------TRGSTDVTISNNWFRNQDKIKLLG----HDDGYIRDKN 122 (202)
Q Consensus 56 ~~~~~Dai~i~-~~~nVwIDHctfs~~~Dg~id~--------~~~s~~VTiS~n~f~~h~k~~liG----~~d~~~~d~~ 122 (202)
-..++|+|.|. +++||-|.+|+...+. | +.+ ..+..+|+|++|.|.+...+.-|- ..+.. .-
T Consensus 223 I~~GDDcIaiksg~~nI~I~n~~c~~gh-G-isiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G---~v 297 (404)
T PLN02188 223 IGTGDDCISIGQGNSQVTITRIRCGPGH-G-ISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKS---AA 297 (404)
T ss_pred EeCCCcEEEEccCCccEEEEEEEEcCCC-c-EEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCce---EE
Confidence 35678999996 6789999999987653 2 332 234579999999999887665552 11110 12
Q ss_pred eeEEEEceEecCCC
Q 041616 123 MKMTIAYNHFGRNC 136 (202)
Q Consensus 123 ~~vT~hhN~f~~~~ 136 (202)
.+|+|-+-.+ .+.
T Consensus 298 ~nI~f~ni~m-~~v 310 (404)
T PLN02188 298 TNMTFENIVM-NNV 310 (404)
T ss_pred EEEEEEeEEe-cCc
Confidence 4677777777 443
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=75.64 E-value=29 Score=33.00 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=12.2
Q ss_pred EEeecCCeEEEecceeccCCcc
Q 041616 63 IRLVIALKVWIDHNTLYKCQNG 84 (202)
Q Consensus 63 i~i~~~~nVwIDHctfs~~~Dg 84 (202)
|.+..++++.|.+++++...|+
T Consensus 183 I~lw~S~g~~V~~N~I~g~RD~ 204 (455)
T TIGR03808 183 IVSFDALGLIVARNTIIGANDN 204 (455)
T ss_pred EEEeccCCCEEECCEEEccCCC
Confidence 3344444666666666666553
No 28
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=75.35 E-value=32 Score=28.62 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=51.6
Q ss_pred CeEEee-cCCeEEEecceeccC---------------CcceEEeeeCCccEEEecceeecCCeeeeeCCCCCcc--CCCc
Q 041616 61 DAIRLV-IALKVWIDHNTLYKC---------------QNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDDGYI--RDKN 122 (202)
Q Consensus 61 Dai~i~-~~~nVwIDHctfs~~---------------~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d~~~--~d~~ 122 (202)
-++.+. +++||+|-+..|... ....+.+. ++++|=|=.|.|+......--...|+.. ..+.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s 115 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGS 115 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-STEEEEEES-EEEETTS-GGGSSSSSSEEEESST
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-ecccEEEeccEEeccccccccccCCceEEEEeCC
Confidence 466676 899999999999982 22234443 5567777777776541110000122211 1234
Q ss_pred eeEEEEceEecCCCCCCCCcc---------cCCeEEEECceEECcc
Q 041616 123 MKMTIAYNHFGRNCNQRMPRV---------RHGFAHVINNLYRKWT 159 (202)
Q Consensus 123 ~~vT~hhN~f~~~~~~R~Pr~---------r~G~~hv~NN~~~n~~ 159 (202)
..||+-+|+| ++.. ....+ +...+=+..|+|.+..
T Consensus 116 ~~vTiS~n~f-~~~~-k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~ 159 (200)
T PF00544_consen 116 DNVTISNNIF-DNHN-KTMLIGSSDSNSTDRGLRVTFHHNYFANTN 159 (200)
T ss_dssp EEEEEES-EE-EEEE-ETCEESSCTTCGGGTTEEEEEES-EEEEEE
T ss_pred ceEEEEchhc-cccc-cccccCCCCCccccCCceEEEEeEEECchh
Confidence 6899999999 4432 12212 1236778899998754
No 29
>PLN03003 Probable polygalacturonase At3g15720
Probab=74.68 E-value=23 Score=33.68 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=47.7
Q ss_pred CCCCCCeEEee-cCCeEEEecceeccCCcceEEee--------eCCccEEEecceeecCCeeeeeCCCCCccCCCceeEE
Q 041616 56 RKIDRDAIRLV-IALKVWIDHNTLYKCQNGLIDVT--------RGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMT 126 (202)
Q Consensus 56 ~~~~~Dai~i~-~~~nVwIDHctfs~~~Dg~id~~--------~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT 126 (202)
-..++|+|.|. +++||+|..|++..+. | +.+. ....+|+|++|.|.+...+.-|-.-++.. ..-.+||
T Consensus 206 I~tGDDCIaiksgs~NI~I~n~~c~~GH-G-ISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~-G~v~nIt 282 (456)
T PLN03003 206 IATGDDCIAINSGTSNIHISGIDCGPGH-G-ISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGS-GYARMIT 282 (456)
T ss_pred EecCCCeEEeCCCCccEEEEeeEEECCC-C-eEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCC-eEEEEEE
Confidence 35679999998 4679999999997653 2 3331 22579999999999876665553222210 0124566
Q ss_pred EEceEe
Q 041616 127 IAYNHF 132 (202)
Q Consensus 127 ~hhN~f 132 (202)
|-+-..
T Consensus 283 f~nI~m 288 (456)
T PLN03003 283 FNGITL 288 (456)
T ss_pred EEeEEe
Confidence 665555
No 30
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=73.28 E-value=10 Score=33.87 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=40.3
Q ss_pred CCCCCCeEEeecC-CeEEEecceeccCCcceEEee---eC-----CccEEEecceeecCCeeeeeC
Q 041616 56 RKIDRDAIRLVIA-LKVWIDHNTLYKCQNGLIDVT---RG-----STDVTISNNWFRNQDKIKLLG 112 (202)
Q Consensus 56 ~~~~~Dai~i~~~-~nVwIDHctfs~~~Dg~id~~---~~-----s~~VTiS~n~f~~h~k~~liG 112 (202)
-..++|+|.+... .||.|..|.+..+. | +.+. .+ -.+|++++|.|.+...++-|-
T Consensus 160 i~~gDD~Iaiks~~~ni~v~n~~~~~gh-G-isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iK 223 (326)
T PF00295_consen 160 IDNGDDCIAIKSGSGNILVENCTCSGGH-G-ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIK 223 (326)
T ss_dssp EESSSESEEESSEECEEEEESEEEESSS-E-EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEE
T ss_pred cccccCcccccccccceEEEeEEEeccc-c-ceeeeccCCccccEEEeEEEEEEEeeccceEEEEE
Confidence 4567999999864 49999999997642 2 4431 11 258999999999887776553
No 31
>PLN03010 polygalacturonase
Probab=71.99 E-value=26 Score=32.75 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=40.5
Q ss_pred CCCCCCeEEeecCCeEEEecceeccC-----CcceEEeeeCCccEEEecceeecCCeeeeeCCC
Q 041616 56 RKIDRDAIRLVIALKVWIDHNTLYKC-----QNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHD 114 (202)
Q Consensus 56 ~~~~~Dai~i~~~~nVwIDHctfs~~-----~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~ 114 (202)
...+.=.|.+.++++|.|++.++... .|| +|+ ..+++|+|++|.+...+-+.-+.+.
T Consensus 176 ~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksg 237 (409)
T PLN03010 176 IDSPKNHISIKTCNYVAISKINILAPETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSG 237 (409)
T ss_pred EcCCceEEEEeccccEEEEEEEEeCCCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCC
Confidence 44455556667778888888877642 343 565 3578999999999988888777654
No 32
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=71.61 E-value=23 Score=33.72 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=72.0
Q ss_pred CCCCCeEEeecCCeEEEecceeccCC-cceEEeeeCCccEEEecceeecCCeeee---eCCC---------CC----cc-
Q 041616 57 KIDRDAIRLVIALKVWIDHNTLYKCQ-NGLIDVTRGSTDVTISNNWFRNQDKIKL---LGHD---------DG----YI- 118 (202)
Q Consensus 57 ~~~~Dai~i~~~~nVwIDHctfs~~~-Dg~id~~~~s~~VTiS~n~f~~h~k~~l---iG~~---------d~----~~- 118 (202)
..-+++|.+..+.+++|..+.++++. |+..-- -++++.|..|.|++-.++.| .... +. ..
T Consensus 236 ~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~n--sss~~~i~~N~~~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av 313 (455)
T TIGR03808 236 GQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGN--SASNIQITGNSVSDVREVALYSEFAFEGAVIANNTVDGAAVGVSV 313 (455)
T ss_pred CCccccEEEEccCCeEEECCEEeccccceEEEE--cccCcEEECcEeeeeeeeEEEEEEeCCCcEEeccEEecCcceEEE
Confidence 44578999999999999999999998 888764 37899999999986555111 1111 00 00
Q ss_pred ---CCCceeEEEEceEecCCCCCCCCc-----ccCC-------eEEEECceEECccceEEc
Q 041616 119 ---RDKNMKMTIAYNHFGRNCNQRMPR-----VRHG-------FAHVINNLYRKWTQYTIG 164 (202)
Q Consensus 119 ---~d~~~~vT~hhN~f~~~~~~R~Pr-----~r~G-------~~hv~NN~~~n~~~yaig 164 (202)
.+++.-.....|+. .+...+-|- -.+| ..-+-.|+++|-..|+|-
T Consensus 314 ~nf~~ggr~~~~~gn~i-rn~~~~~p~~~~~~~~~g~gi~~ead~~~~~n~~e~ap~~g~~ 373 (455)
T TIGR03808 314 CNFNEGGRLAVVQGNII-RNLIPKRPIGTAPDDDAGIGIYVEADTAVTGNVVENAPSFGIV 373 (455)
T ss_pred EeecCCceEEEEeccee-eccccCCCCCCCCCCCCceeEEEEecceeccceecCCcceeEE
Confidence 12344457788888 777777764 2344 235679999998777654
No 33
>PLN02218 polygalacturonase ADPG
Probab=71.46 E-value=21 Score=33.63 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=64.0
Q ss_pred CceEEEEeeCeEEEeeec--CCCCCCeEEeecCCeEEEecceeccC-----CcceEEeeeCCccEEEecceeecCCeeee
Q 041616 38 QKVWTTYRKHMNITLHKL--RKIDRDAIRLVIALKVWIDHNTLYKC-----QNGLIDVTRGSTDVTISNNWFRNQDKIKL 110 (202)
Q Consensus 38 ~p~~IvF~~~g~I~l~~I--~~~~~Dai~i~~~~nVwIDHctfs~~-----~Dg~id~~~~s~~VTiS~n~f~~h~k~~l 110 (202)
.|+.|.|...-.+.+++| ...+.=.|.+..++||.|++.++... .|| +|+ ..+++|+|++|.|...+-+.-
T Consensus 191 rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 191 APTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred CCEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence 477777766666555555 56667778888999999999998752 343 566 357899999999998777777
Q ss_pred eCCCCCccCCCceeEEEEceEe
Q 041616 111 LGHDDGYIRDKNMKMTIAYNHF 132 (202)
Q Consensus 111 iG~~d~~~~d~~~~vT~hhN~f 132 (202)
|.+. ..+|++.++.+
T Consensus 269 Iksg-------s~nI~I~n~~c 283 (431)
T PLN02218 269 IESG-------SQNVQINDITC 283 (431)
T ss_pred ecCC-------CceEEEEeEEE
Confidence 7654 24688888888
No 34
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=68.18 E-value=16 Score=29.49 Aligned_cols=52 Identities=27% Similarity=0.398 Sum_probs=34.0
Q ss_pred ecceeccCCcceEEeeeCCccEEEecceeec-CCeeeeeCCCCCccCCCceeEEEEceEecCCCC
Q 041616 74 DHNTLYKCQNGLIDVTRGSTDVTISNNWFRN-QDKIKLLGHDDGYIRDKNMKMTIAYNHFGRNCN 137 (202)
Q Consensus 74 DHctfs~~~Dg~id~~~~s~~VTiS~n~f~~-h~k~~liG~~d~~~~d~~~~vT~hhN~f~~~~~ 137 (202)
..|.+..+.++ + ..+.+++++++|.|.. ...+..+-.. ..+++.+|.| .+|.
T Consensus 169 ~~~~~~~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 169 NNCIFNGGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGG--------SNIIISNNTI-ENCD 221 (225)
T ss_dssp ECEEEESSSCS-E--ECEEEEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEE-ESSS
T ss_pred CCccccCCCce-e--EeecceEEEEeEEECCccceeEEEECC--------eEEEEEeEEE-ECCc
Confidence 44555556666 3 2334799999999987 5555544322 2488888898 6764
No 35
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=62.41 E-value=22 Score=21.88 Aligned_cols=40 Identities=30% Similarity=0.247 Sum_probs=21.9
Q ss_pred eEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceee
Q 041616 62 AIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFR 103 (202)
Q Consensus 62 ai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~ 103 (202)
||.+..+++..|..++++...|| +.+.. +.+-+|..|.|.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~G-I~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYG-IYLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCE-EEEEe-CCCCEeECCEEE
Confidence 35555565555666666666663 33322 445555555554
No 36
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=62.19 E-value=98 Score=26.24 Aligned_cols=137 Identities=20% Similarity=0.150 Sum_probs=75.6
Q ss_pred cCCCCCCeEEeec---------CCeEEEecceeccC-CcceEEee-----eCCccEEEecceeecCCeeeeeC-CCCC-c
Q 041616 55 LRKIDRDAIRLVI---------ALKVWIDHNTLYKC-QNGLIDVT-----RGSTDVTISNNWFRNQDKIKLLG-HDDG-Y 117 (202)
Q Consensus 55 I~~~~~Dai~i~~---------~~nVwIDHctfs~~-~Dg~id~~-----~~s~~VTiS~n~f~~h~k~~liG-~~d~-~ 117 (202)
|...-+=+|.|.+ +++|+|.|..|..+ ....++.. .+-.+..|-+|.|+.-..+.+.- ..+. .
T Consensus 11 I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~ 90 (198)
T PF08480_consen 11 IYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDL 90 (198)
T ss_pred eecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEeccccc
Confidence 3444455565543 57999999999975 33334332 34457799999999654443332 1111 1
Q ss_pred c-CCCceeEEEEceEecCCCCCCC-Cccc--CC---------eEEEECceEECc-c-ce-EEcccccccccCcceEecCC
Q 041616 118 I-RDKNMKMTIAYNHFGRNCNQRM-PRVR--HG---------FAHVINNLYRKW-T-QY-TIGKANLKYTEEQKCQVANA 181 (202)
Q Consensus 118 ~-~d~~~~vT~hhN~f~~~~~~R~-Pr~r--~G---------~~hv~NN~~~n~-~-~y-aig~~~~~y~~~~~f~~~~~ 181 (202)
. ...+...++..|.+ .++.+|. |... +| .+-+-||-+|+. . .| ...+...+|+ ..-| +...
T Consensus 91 sp~gsgyttivRNNII-~NT~~r~~~~~GtGYgv~N~L~~tHsFvLenNclYnN~aGny~n~~s~tDi~~-dPlf-~d~~ 167 (198)
T PF08480_consen 91 SPKGSGYTTIVRNNII-VNTRKRKSSPAGTGYGVINYLPETHSFVLENNCLYNNAAGNYKNVTSTTDIYA-DPLF-ADQK 167 (198)
T ss_pred CCCCCceEEEEEcceE-eeeeecccCCCCceeEEEecCCCcceEEEEccceeccCcCccccCCCcccccc-Cchh-hccc
Confidence 1 22467789999999 8999774 2222 22 244557777764 2 23 2233333333 3332 3334
Q ss_pred cchhhhcccCCcC
Q 041616 182 KSMRSLTSELRVS 194 (202)
Q Consensus 182 s~v~~lt~~~G~l 194 (202)
..-.-|.+.+|.-
T Consensus 168 ~hDyHLks~~grW 180 (198)
T PF08480_consen 168 NHDYHLKSNAGRW 180 (198)
T ss_pred CCceeeeccCCcC
Confidence 4445556655543
No 37
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=57.79 E-value=42 Score=32.65 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=54.9
Q ss_pred CCCCCeEEeec------------CCeEEEecceeccCCcceEEee---eCCccEEEecceeecCCeeeeeCCCCCccCCC
Q 041616 57 KIDRDAIRLVI------------ALKVWIDHNTLYKCQNGLIDVT---RGSTDVTISNNWFRNQDKIKLLGHDDGYIRDK 121 (202)
Q Consensus 57 ~~~~Dai~i~~------------~~nVwIDHctfs~~~Dg~id~~---~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~ 121 (202)
..+.|+|.+.. +++|||-||.|+.+.-+++.-. .+-.+||+-+|.|.+-..+.=|...+... -+
T Consensus 306 dtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~ 384 (542)
T COG5434 306 DTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GG 384 (542)
T ss_pred ecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-ee
Confidence 34788888753 4789999999998888777632 45679999999999866665555443321 22
Q ss_pred ceeEEEEceEecCCC
Q 041616 122 NMKMTIAYNHFGRNC 136 (202)
Q Consensus 122 ~~~vT~hhN~f~~~~ 136 (202)
..+|+|+-|.. .+.
T Consensus 385 v~nI~~~~~~~-~nv 398 (542)
T COG5434 385 VRNIVFEDNKM-RNV 398 (542)
T ss_pred EEEEEEecccc-cCc
Confidence 35677777776 454
No 38
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=50.65 E-value=1.9e+02 Score=27.09 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=72.9
Q ss_pred CCceEEEEeeCeEEEeeecCCCC-CCeEEeecCCeEEEecceeccCCcceEEeeeCCccEEEecceeecCCeeeeeCCCC
Q 041616 37 PQKVWTTYRKHMNITLHKLRKID-RDAIRLVIALKVWIDHNTLYKCQNGLIDVTRGSTDVTISNNWFRNQDKIKLLGHDD 115 (202)
Q Consensus 37 ~~p~~IvF~~~g~I~l~~I~~~~-~Dai~i~~~~nVwIDHctfs~~~Dg~id~~~~s~~VTiS~n~f~~h~k~~liG~~d 115 (202)
-.|. |++--+.+.........+ --++-+...+++.|.-|.|....--.++... ...|.-|.|..-+|+..- .+
T Consensus 113 ~~P~-V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~~-~~- 186 (386)
T PF01696_consen 113 MGPG-VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIVS-RG- 186 (386)
T ss_pred CCCe-EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEeec-CC-
Confidence 4554 444444444422223222 5678888899999999999998877788753 578999999888887632 22
Q ss_pred CccCCCceeEEEEceEecCCCCCCCCcccCCeEEEECceEECcc
Q 041616 116 GYIRDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWT 159 (202)
Q Consensus 116 ~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~ 159 (202)
+..+++.++.| +.|.==- +..|..++.+|.+.+..
T Consensus 187 ------~~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 187 ------KSKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECG 221 (386)
T ss_pred ------cceEEeeheee-eheEEEE--EecCCeEEecceecccc
Confidence 35678899999 5553221 23678888888888754
No 39
>PLN02480 Probable pectinesterase
Probab=46.86 E-value=2.3e+02 Score=25.93 Aligned_cols=144 Identities=8% Similarity=-0.075 Sum_probs=75.7
Q ss_pred CCchhhhhhhC---CCceEEEEeeCeEEEee-ecCCCCCCeEEeecC--CeEEEecceeccC--CcceEEeeeCCccEEE
Q 041616 26 PGTLRYEAILI---PQKVWTTYRKHMNITLH-KLRKIDRDAIRLVIA--LKVWIDHNTLYKC--QNGLIDVTRGSTDVTI 97 (202)
Q Consensus 26 ~GsLR~av~~~---~~p~~IvF~~~g~I~l~-~I~~~~~Dai~i~~~--~nVwIDHctfs~~--~Dg~id~~~~s~~VTi 97 (202)
-.||.+||.++ ...++++|-..|+-+=+ .|. ...-.|+|.+. ....|++-.-... .-..+.+ .++++++
T Consensus 60 f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~E~V~I~-~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV--~a~~f~a 136 (343)
T PLN02480 60 FTSVQSAIDAVPVGNSEWIIVHLRKGVYREKVHIP-ENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV--EAPHFVA 136 (343)
T ss_pred cccHHHHHhhCccCCCceEEEEEcCcEEEEEEEEC-CCCceEEEEecCCCCeEEEccccccCCCCceEEEE--ECCCEEE
Confidence 34999999885 23466777777775511 121 12233666542 3555554321111 1223333 3566777
Q ss_pred ecceeecCCeeeeeCCC---CCcc---CCCceeEEEEceEecCCCCCCCCcccCCeEEEECceEECccceEEcccccccc
Q 041616 98 SNNWFRNQDKIKLLGHD---DGYI---RDKNMKMTIAYNHFGRNCNQRMPRVRHGFAHVINNLYRKWTQYTIGKANLKYT 171 (202)
Q Consensus 98 S~n~f~~h~k~~liG~~---d~~~---~d~~~~vT~hhN~f~~~~~~R~Pr~r~G~~hv~NN~~~n~~~yaig~~~~~y~ 171 (202)
.+-.|.|... .|.+ .... .-...++.|.+|.| ... |-.-....|.-.+.|+|++..-.+=+|...+ +.
T Consensus 137 ~nLTf~Nta~---~g~~~~~~~QAVAl~v~gDra~f~~c~f-~G~-QDTLy~~~gR~yf~~C~IeG~VDFIFG~g~a-~f 210 (343)
T PLN02480 137 FGISIRNDAP---TGMAFTSENQSVAAFVGADKVAFYHCAF-YST-HNTLFDYKGRHYYHSCYIQGSIDFIFGRGRS-IF 210 (343)
T ss_pred EeeEEEecCC---CCCCCCCCCceEEEEecCCcEEEEeeEE-ecc-cceeEeCCCCEEEEeCEEEeeeeEEccceeE-EE
Confidence 7777776521 0111 0000 01245789999988 433 3233234577788899998877777775443 33
Q ss_pred cCcceEe
Q 041616 172 EEQKCQV 178 (202)
Q Consensus 172 ~~~~f~~ 178 (202)
|+..+.+
T Consensus 211 e~C~i~s 217 (343)
T PLN02480 211 HNCEIFV 217 (343)
T ss_pred EccEEEE
Confidence 3333333
No 40
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=33.57 E-value=56 Score=16.61 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=7.0
Q ss_pred eEEEecceeccCCc
Q 041616 70 KVWIDHNTLYKCQN 83 (202)
Q Consensus 70 nVwIDHctfs~~~D 83 (202)
+++|.+|+|+....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 45555555554444
No 41
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=31.56 E-value=3.5e+02 Score=23.58 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCCeEEeecCCeEEEecceeccC-CcceEEe----eeCCccEEEecceeecCCeeeeeCCCCCccCCCceeEEEEceEec
Q 041616 59 DRDAIRLVIALKVWIDHNTLYKC-QNGLIDV----TRGSTDVTISNNWFRNQDKIKLLGHDDGYIRDKNMKMTIAYNHFG 133 (202)
Q Consensus 59 ~~Dai~i~~~~nVwIDHctfs~~-~Dg~id~----~~~s~~VTiS~n~f~~h~k~~liG~~d~~~~d~~~~vT~hhN~f~ 133 (202)
.+-||.|+++ +.-|..|+|+.+ .+|.... ......++|+.|.+.....+..+-..... ..-.+-+|++
T Consensus 113 ~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~-----~~n~I~NN~I- 185 (246)
T PF07602_consen 113 RGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAAP-----VENKIENNII- 185 (246)
T ss_pred cceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccCC-----ccceeeccEE-
Confidence 4556777766 666778888875 4443221 12335667777766643333322211110 0113344555
Q ss_pred CCCCC------CCCcccCC-eEEEECceEECccceEEccc----ccccccCcce
Q 041616 134 RNCNQ------RMPRVRHG-FAHVINNLYRKWTQYTIGKA----NLKYTEEQKC 176 (202)
Q Consensus 134 ~~~~~------R~Pr~r~G-~~hv~NN~~~n~~~yaig~~----~~~y~~~~~f 176 (202)
.++.. ..|-+..+ +..+-||.|.+.+.|.+-.. ..+|+-.|..
T Consensus 186 ~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l~a~gN~l 239 (246)
T PF07602_consen 186 ENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTLYAVGNQL 239 (246)
T ss_pred EeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeEEEeCCcc
Confidence 33221 12444432 33466777877777766541 2445555543
No 42
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=29.25 E-value=2.8e+02 Score=21.74 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=30.9
Q ss_pred CCCCCeEEeecCCeEEEecceecc---CCcceEEeeeCCccE-EEecc
Q 041616 57 KIDRDAIRLVIALKVWIDHNTLYK---CQNGLIDVTRGSTDV-TISNN 100 (202)
Q Consensus 57 ~~~~Dai~i~~~~nVwIDHctfs~---~~Dg~id~~~~s~~V-TiS~n 100 (202)
..+-|.+.|......+|-=|.=++ +..|.+|+..+..-| ||.|.
T Consensus 41 ~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyWd 88 (131)
T PF06355_consen 41 PDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYWD 88 (131)
T ss_pred ccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEEe
Confidence 344467777766677887777654 588999998776666 77653
No 43
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=21.15 E-value=48 Score=22.79 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=12.3
Q ss_pred CeEEee-cCCeEEEeccee
Q 041616 61 DAIRLV-IALKVWIDHNTL 78 (202)
Q Consensus 61 Dai~i~-~~~nVwIDHctf 78 (202)
+.|.+. ...-|||+|+.-
T Consensus 14 ~~i~VtY~G~pV~Ie~vde 32 (59)
T PRK03174 14 DMANVTYNGVPIYIQHVDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 344443 467899999983
No 44
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=20.07 E-value=52 Score=22.60 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=12.2
Q ss_pred CeEEee-cCCeEEEeccee
Q 041616 61 DAIRLV-IALKVWIDHNTL 78 (202)
Q Consensus 61 Dai~i~-~~~nVwIDHctf 78 (202)
+.|.+. ...-|||+|+.=
T Consensus 14 ~~i~V~Y~G~pV~Iq~vde 32 (59)
T PRK01625 14 SRIDVTYEGVPVWIESCDE 32 (59)
T ss_pred cceEEEECCEEEEEEEEcC
Confidence 334443 467899999983
Done!