BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041618
MKSMLSRLRNAVRKVKVLLNLSLHRWRIASSMIGASGSKRRLSFNDRPGLRACTDDNYAD
ESSTDSASAGPRSHGGESLHRTISYPSEDDIDKRAEMFIANFHRQLQIERQISLELRYCR
ANSFEYMSP

High Scoring Gene Products

Symbol, full name Information P value
AT5G57510 protein from Arabidopsis thaliana 5.9e-25
AT5G13880 protein from Arabidopsis thaliana 0.00038

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041618
        (129 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2174537 - symbol:AT5G57510 "AT5G57510" species...   284  5.9e-25   1
TAIR|locus:2159128 - symbol:AT5G13880 "AT5G13880" species...    93  0.00038   1


>TAIR|locus:2174537 [details] [associations]
            symbol:AT5G57510 "AT5G57510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0071456 "cellular response to hypoxia"
            evidence=IEP] [GO:0010200 "response to chitin" evidence=RCA]
            EMBL:CP002688 GO:GO:0071456 EMBL:AB011482 InterPro:IPR008480
            Pfam:PF05553 EMBL:DQ447084 IPI:IPI00529248 RefSeq:NP_200559.1
            UniGene:At.65686 EnsemblPlants:AT5G57510.1 GeneID:835855
            KEGG:ath:AT5G57510 TAIR:At5g57510 InParanoid:Q9FKM0 OMA:EMFIANF
            PhylomeDB:Q9FKM0 ProtClustDB:CLSN2719505 ArrayExpress:Q9FKM0
            Genevestigator:Q9FKM0 Uniprot:Q9FKM0
        Length = 130

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 71/134 (52%), Positives = 91/134 (67%)

Query:     3 SMLSRLRNAVRKVKVLLNLSLHR-WRIASSMIGASGSKR--RLSFNDRPGLRACTDDNYA 59
             S+L+RLR AV KVK +L+  ++  W +   M+G+S S    RLSFNDRPGL A   +N  
Sbjct:     8 SLLNRLRQAVNKVKFVLSFKINSLWGLVP-MLGSSSSSSSLRLSFNDRPGLTAAFTENEP 66

Query:    60 DESSTDSASAGPRSHGGESLHRTISYP--SEDDIDKRAEMFIANFHRQLQIERQISLELR 117
             D  ST S      S G  +L+RT+SY   S++DID +AEMFIANF+RQL+IERQISLEL+
Sbjct:    67 D--STGS------SRG--ALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELK 116

Query:   118 YCRAN--SFEYMSP 129
             YC+ N  SF Y SP
Sbjct:   117 YCQGNNQSFNYRSP 130


>TAIR|locus:2159128 [details] [associations]
            symbol:AT5G13880 "AT5G13880" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 InterPro:IPR008480 Pfam:PF05553
            IPI:IPI00520307 RefSeq:NP_568291.1 UniGene:At.26592
            EnsemblPlants:AT5G13880.1 GeneID:831235 KEGG:ath:AT5G13880
            OMA:NAMSSTP Uniprot:F4K5D0
        Length = 188

 Score = 93 (37.8 bits), Expect = 0.00038, P = 0.00038
 Identities = 16/28 (57%), Positives = 24/28 (85%)

Query:    88 EDDIDKRAEMFIANFHRQLQIERQISLE 115
             ED+IDK A++FI  FHRQ+ +++Q+SLE
Sbjct:   151 EDEIDKVADLFITRFHRQMWLQKQLSLE 178


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129       129   0.00091  102 3  11 22  0.38    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.08u 0.12s 13.20t   Elapsed:  00:00:00
  Total cpu time:  13.08u 0.12s 13.20t   Elapsed:  00:00:00
  Start:  Fri May 10 22:07:09 2013   End:  Fri May 10 22:07:09 2013

Back to top