BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041618
         (129 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P04114|APOB_HUMAN Apolipoprotein B-100 OS=Homo sapiens GN=APOB PE=1 SV=2
          Length = 4563

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 48  PGLRACTDDNYADESSTDSASAGP 71
           PGL  CT   Y++ SSTDSAS  P
Sbjct: 971 PGLNYCTSGAYSNASSTDSASYYP 994


>sp|Q87C05|ERA_XYLFT GTPase Era OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
           GN=era PE=3 SV=1
          Length = 298

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 87  SEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMS 128
           SED+I  R++ F+A+   + Q+ RQ+  EL Y      EY +
Sbjct: 182 SEDEITDRSQRFLASELVREQVMRQLGKELPYATTVEIEYFT 223


>sp|B2I605|ERA_XYLF2 GTPase Era OS=Xylella fastidiosa (strain M23) GN=era PE=3 SV=1
          Length = 298

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 87  SEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMS 128
           SED+I  R++ F+A+   + Q+ RQ+  EL Y      EY +
Sbjct: 182 SEDEITDRSQRFLASELVREQVMRQLGKELPYATTVEIEYFT 223


>sp|B0U3D9|ERA_XYLFM GTPase Era OS=Xylella fastidiosa (strain M12) GN=era PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 87  SEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMS 128
           SED+I  R++ F+A+   + Q+ RQ+  EL Y      EY +
Sbjct: 182 SEDEITDRSQRFLASELVREQVMRQLGEELPYATTVEIEYFT 223


>sp|Q9PB97|ERA_XYLFA GTPase Era OS=Xylella fastidiosa (strain 9a5c) GN=era PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 87  SEDDIDKRAEMFIANFHRQLQIERQISLELRYCRANSFEYMS 128
           SED+I  R++ F+A+   + Q+ RQ+  EL Y      EY +
Sbjct: 182 SEDEITDRSQRFLASELVREQVMRQLGEELPYATTVEIEYFT 223


>sp|A8F323|SYA_RICM5 Alanine--tRNA ligase OS=Rickettsia massiliae (strain Mtu5) GN=alaS
           PE=3 SV=2
          Length = 878

 Score = 28.9 bits (63), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 34  GASGSKRRLSFNDRPGLRACTDDNYADESSTDSASAGPRSH----GGESLHRTISYPSED 89
            AS  K+   F D   ++  T+DN+   S  D+   GP S      GE ++  +    ++
Sbjct: 138 AASYWKKIAGFGDDRIIKIKTNDNFW--SMGDTGPCGPCSEIFYDHGEQIYGGLPGTKDE 195

Query: 90  DIDKRAEMFIANFHRQLQIERQISLEL 116
           D D+  E++   F +  QI++  S+EL
Sbjct: 196 DGDRFIEIWNMVFMQYEQIDKDTSIEL 222


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.130    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,308,011
Number of Sequences: 539616
Number of extensions: 1511643
Number of successful extensions: 3734
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3726
Number of HSP's gapped (non-prelim): 13
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)