Query 041618
Match_columns 129
No_of_seqs 100 out of 117
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 15:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3w_A H10H24; four-helix bund 55.6 13 0.00045 21.9 3.2 22 88-109 3-24 (32)
2 3n5w_A Nitric oxide synthase; 46.7 8.7 0.0003 33.6 2.0 23 87-109 54-76 (422)
3 2ort_A Nitric oxide synthase, 46.4 8.3 0.00028 33.4 1.8 23 87-109 16-38 (389)
4 1d0c_A Bovine endothelial nitr 44.7 9.7 0.00033 33.5 2.0 23 87-109 83-105 (444)
5 2ejx_A ST0812; arcaea, unknown 44.2 19 0.00066 27.0 3.4 22 91-112 115-136 (139)
6 3e7m_A Nitric oxide synthase, 44.1 6.1 0.00021 34.7 0.7 23 87-109 64-86 (433)
7 2flq_A Nitric oxide synthase; 36.6 15 0.00052 31.7 1.9 21 88-108 13-33 (375)
8 1m7v_A Nitric oxide synthase; 36.2 25 0.00087 30.1 3.2 20 89-108 5-24 (363)
9 2gom_A Fibrinogen-binding prot 29.5 38 0.0013 22.4 2.6 17 103-119 42-58 (61)
10 4hyz_A Uncharacterized protein 28.3 33 0.0011 23.5 2.2 27 78-104 3-29 (114)
11 1of5_A MRNA export factor MEX6 25.3 38 0.0013 26.4 2.3 31 84-114 3-33 (221)
12 1jkg_B TAP; NTF2-like domain, 21.9 60 0.0021 25.1 2.9 29 84-112 7-36 (250)
13 2noj_B EFB homologous protein; 21.0 66 0.0022 22.2 2.6 17 103-119 61-77 (80)
14 1q40_B MEX67, mRNA export fact 20.9 43 0.0015 26.0 1.8 30 85-114 7-36 (219)
No 1
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=55.56 E-value=13 Score=21.86 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHH
Q 041618 88 EDDIDKRAEMFIANFHRQLQIE 109 (129)
Q Consensus 88 dd~ID~rAE~FI~kF~~QmrLQ 109 (129)
..+|=+--|+|.++|.+-++|.
T Consensus 3 ggeiwklheeflkkfeellklh 24 (32)
T 1m3w_A 3 GGEIWKLHEEFLKKFEELLKLH 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999998885
No 2
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=46.71 E-value=8.7 Score=33.59 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.0
Q ss_pred CchhHhHHHHHHHHHHHHHHHHH
Q 041618 87 SEDDIDKRAEMFIANFHRQLQIE 109 (129)
Q Consensus 87 ~dd~ID~rAE~FI~kF~~QmrLQ 109 (129)
.-|++-..|++||..||.+++..
T Consensus 54 ~~e~ll~eA~~Fi~q~y~e~~~~ 76 (422)
T 3n5w_A 54 TKDQLFPLAKEFLDQYYSSIKRF 76 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHHHHHhcccc
Confidence 45789999999999999998754
No 3
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme, dimerization, inhibitor, NOS, oxidoreductase; HET: HEM 342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A* 2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A* 1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A* 1dwx_A* 1n2n_A* 1qw4_A* ...
Probab=46.41 E-value=8.3 Score=33.40 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.9
Q ss_pred CchhHhHHHHHHHHHHHHHHHHH
Q 041618 87 SEDDIDKRAEMFIANFHRQLQIE 109 (129)
Q Consensus 87 ~dd~ID~rAE~FI~kF~~QmrLQ 109 (129)
..+++-..|++||..||.+++.+
T Consensus 16 ~~~~l~~eA~~Fi~~~y~e~~~~ 38 (389)
T 2ort_A 16 PLEELLPHAIEFINQYYGSFKEA 38 (389)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHhcCcc
Confidence 45789999999999999998764
No 4
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=44.72 E-value=9.7 Score=33.51 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=19.6
Q ss_pred CchhHhHHHHHHHHHHHHHHHHH
Q 041618 87 SEDDIDKRAEMFIANFHRQLQIE 109 (129)
Q Consensus 87 ~dd~ID~rAE~FI~kF~~QmrLQ 109 (129)
..+++-..|++||..||.+++.+
T Consensus 83 ~~~~l~~eA~~Fi~~~y~e~~~~ 105 (444)
T 1d0c_A 83 PAEQLLSQARDFINQYYSSIKRS 105 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHHHHHhcccc
Confidence 45789999999999999998554
No 5
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=44.17 E-value=19 Score=27.02 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 041618 91 IDKRAEMFIANFHRQLQIERQI 112 (129)
Q Consensus 91 ID~rAE~FI~kF~~QmrLQRq~ 112 (129)
|+++-+.|.++|.+.+||+|-.
T Consensus 115 i~k~i~~f~k~ldE~IRlERIK 136 (139)
T 2ejx_A 115 VSSNLDRLAENIDEIIRLERIK 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHhhhh
Confidence 8899999999999999999853
No 6
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=44.11 E-value=6.1 Score=34.65 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.3
Q ss_pred CchhHhHHHHHHHHHHHHHHHHH
Q 041618 87 SEDDIDKRAEMFIANFHRQLQIE 109 (129)
Q Consensus 87 ~dd~ID~rAE~FI~kF~~QmrLQ 109 (129)
..+++-..|++||..||..++..
T Consensus 64 ~~e~l~~eA~~Fi~q~y~e~~~~ 86 (433)
T 3e7m_A 64 PLEELLPHAIEFINQYYGSFKEA 86 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CHHHHHHHHHHHHHHHHHhcCCC
Confidence 45789999999999999877643
No 7
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus}
Probab=36.63 E-value=15 Score=31.65 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.5
Q ss_pred chhHhHHHHHHHHHHHHHHHH
Q 041618 88 EDDIDKRAEMFIANFHRQLQI 108 (129)
Q Consensus 88 dd~ID~rAE~FI~kF~~QmrL 108 (129)
-|++-..|++||..||.+++.
T Consensus 13 ~e~l~~eA~~Fi~~~y~e~~~ 33 (375)
T 2flq_A 13 DEQLMTKAEQFIIASYRELGK 33 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 378899999999999999855
No 8
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=36.19 E-value=25 Score=30.13 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=17.7
Q ss_pred hhHhHHHHHHHHHHHHHHHH
Q 041618 89 DDIDKRAEMFIANFHRQLQI 108 (129)
Q Consensus 89 d~ID~rAE~FI~kF~~QmrL 108 (129)
+++-..|++||..||.+++.
T Consensus 5 ~~l~~eA~~Fi~~~y~e~~~ 24 (363)
T 1m7v_A 5 EILWNEAKAFIAECYQELGK 24 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 56889999999999999855
No 9
>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesio complex; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1 PDB: 2gox_B 3d5s_C 3d5r_C
Probab=29.53 E-value=38 Score=22.43 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041618 103 HRQLQIERQISLELRYC 119 (129)
Q Consensus 103 ~~QmrLQRq~Sl~lRY~ 119 (129)
|+.|+|||+.-+.|.|.
T Consensus 42 ~~K~~LQ~~ID~VLK~~ 58 (61)
T 2gom_A 42 VKKMVLQERIDNVLKQG 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 68899999999888874
No 10
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=28.30 E-value=33 Score=23.52 Aligned_cols=27 Identities=15% Similarity=-0.029 Sum_probs=20.6
Q ss_pred ceeeecCCCCchhHhHHHHHHHHHHHH
Q 041618 78 SLHRTISYPSEDDIDKRAEMFIANFHR 104 (129)
Q Consensus 78 ~l~R~~s~~~dd~ID~rAE~FI~kF~~ 104 (129)
-+.+.+..-+++.|-++|++||..|.+
T Consensus 3 ~~~~l~~~fde~~v~~~A~~~I~~l~~ 29 (114)
T 4hyz_A 3 ILKELPEGFDKETVRKQAMEDIEIAQS 29 (114)
T ss_dssp EESSCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred hhhcCChhhhHHHHHHHHHHHHHHHHh
Confidence 345555555778899999999999974
No 11
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=25.32 E-value=38 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHHHHHH
Q 041618 84 SYPSEDDIDKRAEMFIANFHRQLQIERQISL 114 (129)
Q Consensus 84 s~~~dd~ID~rAE~FI~kF~~QmrLQRq~Sl 114 (129)
++-.++++..-|++||.+||.-.==.|+.-+
T Consensus 3 ~ff~d~~~~~~~~~Fv~~Yy~~fDsdR~~L~ 33 (221)
T 1of5_A 3 FFFENDALGQSSTDFATNFLNLWDNNREQLL 33 (221)
T ss_dssp TCCCCCTTCHHHHHHHHHHHHHHHHCGGGGG
T ss_pred CccCCHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3447899999999999999987665555433
No 12
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=21.93 E-value=60 Score=25.11 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=22.2
Q ss_pred CCCCchhHhHHHHHHHHHHHHHHHHH-HHH
Q 041618 84 SYPSEDDIDKRAEMFIANFHRQLQIE-RQI 112 (129)
Q Consensus 84 s~~~dd~ID~rAE~FI~kF~~QmrLQ-Rq~ 112 (129)
+|-+++++..-|++|+..||.-.==. |+.
T Consensus 7 ~f~~~~~~~~~~~~Fv~~Yy~~fD~~~R~~ 36 (250)
T 1jkg_B 7 SYFGTENLKSLVLHFLQQYYAIYDSGDRQG 36 (250)
T ss_dssp CBCSSHHHHHHHHHHHHHHHHHHTSSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHHHHHCcCcHHH
Confidence 34478999999999999999765443 554
No 13
>2noj_B EFB homologous protein; protein-protein complex, immune system; 2.70A {Staphylococcus aureus subsp} SCOP: a.7.17.1
Probab=21.01 E-value=66 Score=22.21 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041618 103 HRQLQIERQISLELRYC 119 (129)
Q Consensus 103 ~~QmrLQRq~Sl~lRY~ 119 (129)
|+.|+|||++-+.|.|.
T Consensus 61 ~~K~~LQ~~ID~VLK~~ 77 (80)
T 2noj_B 61 YEKKKLQRQIDLVLKYN 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 67899999999888874
No 14
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=20.88 E-value=43 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=19.1
Q ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHH
Q 041618 85 YPSEDDIDKRAEMFIANFHRQLQIERQISL 114 (129)
Q Consensus 85 ~~~dd~ID~rAE~FI~kF~~QmrLQRq~Sl 114 (129)
+-.++++..-|++||.+||.-.==.|+.-+
T Consensus 7 ff~~~~~~~~~~~Fl~~Yy~~fDsdR~~L~ 36 (219)
T 1q40_B 7 FFQDEDSRNLATNFIANYLKLWDANRSELM 36 (219)
T ss_dssp ------CHHHHHHHHHHHHHHHHSCGGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 347889999999999999987665555433
Done!