Query 041618
Match_columns 129
No_of_seqs 100 out of 117
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 15:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041618.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041618hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7va_ d.174.1.1 (A:) Nitric 58.2 3.3 0.00024 33.6 3.2 31 88-120 4-34 (363)
2 d1q2oa_ d.174.1.1 (A:) Nitric 52.4 2.9 0.00021 34.5 2.0 33 87-119 55-87 (416)
3 d3e7ma1 d.174.1.1 (A:77-497) N 43.1 3 0.00022 34.4 0.7 33 87-119 53-85 (421)
4 d1om4a_ d.174.1.1 (A:) Nitric 39.1 6.3 0.00046 32.4 2.0 23 86-108 51-73 (418)
5 d1ej5a_ a.68.1.1 (A:) Wiscott- 24.5 20 0.0015 24.1 2.3 19 87-105 36-55 (107)
6 d1cr5a2 d.31.1.1 (A:108-210) C 22.3 11 0.00081 24.8 0.6 18 89-106 27-44 (103)
7 d1jkga_ d.17.4.2 (A:) NTF2-rel 20.0 36 0.0026 22.2 2.8 30 90-121 11-40 (139)
8 d2nojb1 a.7.17.1 (B:52-109) Un 19.1 38 0.0028 20.7 2.6 17 103-119 39-55 (58)
9 d1ojha_ a.214.1.1 (A:) Phycobi 19.0 46 0.0033 20.0 2.9 17 93-109 24-40 (52)
10 d1qcsa2 d.31.1.1 (A:86-201) C- 17.2 17 0.0012 24.3 0.6 19 88-106 26-44 (116)
No 1
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=58.24 E-value=3.3 Score=33.58 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=23.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041618 88 EDDIDKRAEMFIANFHRQLQIERQISLELRYCR 120 (129)
Q Consensus 88 dd~ID~rAE~FI~kF~~QmrLQRq~Sl~lRY~~ 120 (129)
-|+|-..|++||..||.+++ +.+..+.|-.+
T Consensus 4 ~e~l~~eA~~Fi~~~y~e~~--~~~~~~~Rl~e 34 (363)
T d1m7va_ 4 MEILWNEAKAFIAECYQELG--KEEEVKDRLDS 34 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC--cchhHHHHHHH
Confidence 47788999999999999976 44556556544
No 2
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=52.37 E-value=2.9 Score=34.45 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=24.3
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041618 87 SEDDIDKRAEMFIANFHRQLQIERQISLELRYC 119 (129)
Q Consensus 87 ~dd~ID~rAE~FI~kF~~QmrLQRq~Sl~lRY~ 119 (129)
.-|+|-..|++||..||..++....+..+-|..
T Consensus 55 ~~e~ll~eA~~Fi~q~y~e~~~~~~~~~~~R~~ 87 (416)
T d1q2oa_ 55 PAEQLLSQARDFINQYYSSIKRSGSQAHEERLQ 87 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH
Confidence 469999999999999999987543333333443
No 3
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.06 E-value=3 Score=34.41 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=23.4
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041618 87 SEDDIDKRAEMFIANFHRQLQIERQISLELRYC 119 (129)
Q Consensus 87 ~dd~ID~rAE~FI~kF~~QmrLQRq~Sl~lRY~ 119 (129)
..|+|-..|++||..||..++....+...-|..
T Consensus 53 ~~e~ll~eA~~Fi~qyy~e~~~~~~~~~~~R~~ 85 (421)
T d3e7ma1 53 PLEELLPHAIEFINQYYGSFKEAKIEEHLARLE 85 (421)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 458999999999999998876543333333433
No 4
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.13 E-value=6.3 Score=32.42 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=19.6
Q ss_pred CCchhHhHHHHHHHHHHHHHHHH
Q 041618 86 PSEDDIDKRAEMFIANFHRQLQI 108 (129)
Q Consensus 86 ~~dd~ID~rAE~FI~kF~~QmrL 108 (129)
...|+|-..|++||..||..++.
T Consensus 51 ~~~e~ll~~A~~Fi~qyy~e~~~ 73 (418)
T d1om4a_ 51 RTKDQLFPLAKEFLDQYYSSIKR 73 (418)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHhhcc
Confidence 35789999999999999999863
No 5
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.52 E-value=20 Score=24.09 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.9
Q ss_pred CchhH-hHHHHHHHHHHHHH
Q 041618 87 SEDDI-DKRAEMFIANFHRQ 105 (129)
Q Consensus 87 ~dd~I-D~rAE~FI~kF~~Q 105 (129)
+++++ |..+-.||-+|+++
T Consensus 36 sk~~lkd~et~~~I~~Fiek 55 (107)
T d1ej5a_ 36 SEAQLTDAETSKLIYDFIED 55 (107)
T ss_dssp CHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHH
Confidence 46778 88999999999974
No 6
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=22.29 E-value=11 Score=24.77 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.6
Q ss_pred hhHhHHHHHHHHHHHHHH
Q 041618 89 DDIDKRAEMFIANFHRQL 106 (129)
Q Consensus 89 d~ID~rAE~FI~kF~~Qm 106 (129)
=|=|+-|.+||.+|..|.
T Consensus 27 ~D~Dela~~F~~~F~~Q~ 44 (103)
T d1cr5a2 27 FDQDELAKQFVRCYESQI 44 (103)
T ss_dssp CCHHHHHHHHHHHHTTCE
T ss_pred ccHHHHHHHHHHHhcCCC
Confidence 355788999999998763
No 7
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.96 E-value=36 Score=22.25 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=19.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041618 90 DIDKRAEMFIANFHRQLQIERQISLELRYCRA 121 (129)
Q Consensus 90 ~ID~rAE~FI~kF~~QmrLQRq~Sl~lRY~~~ 121 (129)
..-+.|++|++.||+-|- ++.+.|. ++...
T Consensus 11 ~a~~~a~~FV~~YY~~l~-~~r~~L~-~fY~~ 40 (139)
T d1jkga_ 11 QACRAAEEFVNVYYTTMD-KRRRLLS-RLYMG 40 (139)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCGGGGG-GGEEE
T ss_pred HHHHHHHHHHHHHHHHHH-hCHHHHH-HHhCC
Confidence 344589999999999876 4444553 44433
No 8
>d2nojb1 a.7.17.1 (B:52-109) Uncharacterized protein SAV1155 {Staphylococcus aureus [TaxId: 1280]}
Probab=19.13 E-value=38 Score=20.70 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041618 103 HRQLQIERQISLELRYC 119 (129)
Q Consensus 103 ~~QmrLQRq~Sl~lRY~ 119 (129)
++.|.||+++-..|.|.
T Consensus 39 ~~k~~lq~~id~vlk~~ 55 (58)
T d2nojb1 39 YEKKKLQRQIDLVLKYN 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67899999998888774
No 9
>d1ojha_ a.214.1.1 (A:) Phycobilisome degradation protein NblA {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=18.99 E-value=46 Score=19.99 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041618 93 KRAEMFIANFHRQLQIE 109 (129)
Q Consensus 93 ~rAE~FI~kF~~QmrLQ 109 (129)
+.|.+|.-+-|+||-++
T Consensus 24 EQAqdfLv~Lykqm~ir 40 (52)
T d1ojha_ 24 DQAKDFLVKLYEQMVVR 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57999999999999875
No 10
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=17.18 E-value=17 Score=24.31 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=15.2
Q ss_pred chhHhHHHHHHHHHHHHHH
Q 041618 88 EDDIDKRAEMFIANFHRQL 106 (129)
Q Consensus 88 dd~ID~rAE~FI~kF~~Qm 106 (129)
.=|=|+-|.+||.+|..|.
T Consensus 26 p~D~Dela~~F~~~F~~Qi 44 (116)
T d1qcsa2 26 PYDTDKMAAEFIQQFNNQA 44 (116)
T ss_dssp EEEHHHHHHHHHHHHTTCE
T ss_pred CcCHHHHHHHHHHHhCCCC
Confidence 3466889999999998763
Done!