Query 041620
Match_columns 172
No_of_seqs 194 out of 1497
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2814 AraJ Arabinose efflux 99.9 1.7E-23 3.7E-28 155.6 11.1 153 5-159 37-189 (394)
2 TIGR02332 HpaX 4-hydroxyphenyl 99.9 6E-23 1.3E-27 156.5 13.2 151 6-156 33-187 (412)
3 PRK03545 putative arabinose tr 99.9 5.2E-23 1.1E-27 155.6 11.7 150 5-156 33-182 (390)
4 TIGR00903 2A0129 major facilit 99.9 6.7E-23 1.5E-27 154.0 11.1 152 5-159 15-166 (368)
5 KOG1330 Sugar transporter/spin 99.9 8.5E-25 1.9E-29 163.1 0.5 151 6-158 58-209 (493)
6 PRK14995 methyl viologen resis 99.9 1E-22 2.2E-27 158.4 12.0 153 5-159 30-183 (495)
7 PF07690 MFS_1: Major Facilita 99.9 3.1E-22 6.7E-27 148.6 13.0 146 6-153 22-167 (352)
8 PRK10213 nepI ribonucleoside t 99.9 1.9E-22 4.1E-27 152.9 11.6 144 6-151 45-188 (394)
9 PRK09705 cynX putative cyanate 99.9 7.9E-22 1.7E-26 149.5 12.6 142 5-149 33-175 (393)
10 PRK15403 multidrug efflux syst 99.9 5.2E-22 1.1E-26 151.3 10.8 148 6-155 41-188 (413)
11 PRK10091 MFS transport protein 99.9 6.3E-22 1.4E-26 149.4 11.1 148 6-155 28-175 (382)
12 TIGR00893 2A0114 d-galactonate 99.9 2.2E-22 4.8E-27 151.0 8.5 149 6-156 19-167 (399)
13 TIGR00711 efflux_EmrB drug res 99.9 4.1E-22 9E-27 154.3 10.1 150 6-157 27-176 (485)
14 PRK10077 xylE D-xylose transpo 99.9 3.3E-21 7.2E-26 149.1 14.2 150 9-158 48-215 (479)
15 TIGR00891 2A0112 putative sial 99.9 7.9E-22 1.7E-26 149.1 10.5 146 6-152 37-183 (405)
16 PRK11663 regulatory protein Uh 99.9 1.5E-21 3.2E-26 149.7 11.8 145 6-152 48-192 (434)
17 TIGR00710 efflux_Bcr_CflA drug 99.9 7.8E-22 1.7E-26 148.3 9.6 149 6-156 30-178 (385)
18 PRK12307 putative sialic acid 99.9 1.9E-21 4.1E-26 148.5 11.5 138 7-146 44-181 (426)
19 TIGR01299 synapt_SV2 synaptic 99.9 1.1E-21 2.4E-26 157.5 10.3 152 7-158 193-355 (742)
20 TIGR00890 2A0111 Oxalate/Forma 99.9 1.3E-21 2.9E-26 146.2 10.1 148 6-156 28-175 (377)
21 PRK11551 putative 3-hydroxyphe 99.9 2E-21 4.4E-26 147.5 11.2 146 6-153 40-185 (406)
22 TIGR00900 2A0121 H+ Antiporter 99.9 2.5E-21 5.3E-26 144.3 11.1 146 9-156 27-177 (365)
23 PRK03699 putative transporter; 99.9 6E-21 1.3E-25 144.6 12.7 146 6-153 32-178 (394)
24 TIGR00898 2A0119 cation transp 99.9 4E-21 8.7E-26 149.7 11.9 147 6-157 114-263 (505)
25 TIGR00881 2A0104 phosphoglycer 99.9 1.4E-21 3E-26 146.3 8.9 148 6-155 20-168 (379)
26 PRK11102 bicyclomycin/multidru 99.9 2.7E-21 5.9E-26 145.3 10.3 148 6-155 16-163 (377)
27 COG2271 UhpC Sugar phosphate p 99.9 1.8E-21 3.9E-26 144.2 8.5 153 5-159 53-207 (448)
28 TIGR00894 2A0114euk Na(+)-depe 99.9 3.2E-21 7E-26 148.9 10.0 148 9-158 69-219 (465)
29 TIGR00887 2A0109 phosphate:H+ 99.9 1.5E-20 3.3E-25 146.6 13.6 148 11-158 51-225 (502)
30 PRK10473 multidrug efflux syst 99.9 6.2E-21 1.3E-25 144.3 11.0 148 6-155 28-175 (392)
31 PRK09556 uhpT sugar phosphate 99.9 4.3E-21 9.4E-26 148.4 10.2 151 6-156 54-210 (467)
32 TIGR00886 2A0108 nitrite extru 99.8 2.6E-20 5.6E-25 139.4 11.5 135 7-142 28-171 (366)
33 PRK10504 putative transporter; 99.8 1.8E-20 3.9E-25 144.9 10.9 148 7-156 36-183 (471)
34 PRK10406 alpha-ketoglutarate t 99.8 8.3E-20 1.8E-24 140.0 14.2 138 13-150 57-211 (432)
35 PRK15402 multidrug efflux syst 99.8 2.2E-20 4.8E-25 142.0 10.8 148 6-155 38-185 (406)
36 PRK12382 putative transporter; 99.8 6.5E-20 1.4E-24 138.7 13.2 139 7-147 42-188 (392)
37 TIGR00879 SP MFS transporter, 99.8 1E-19 2.2E-24 139.9 14.0 146 12-157 67-216 (481)
38 PRK05122 major facilitator sup 99.8 3.9E-20 8.5E-25 140.2 11.2 141 7-149 42-190 (399)
39 PRK11652 emrD multidrug resist 99.8 2.9E-20 6.4E-25 140.7 10.5 145 6-152 33-177 (394)
40 PRK03893 putative sialic acid 99.8 3.9E-20 8.5E-25 143.8 11.4 140 7-148 46-185 (496)
41 TIGR00885 fucP L-fucose:H+ sym 99.8 5.4E-20 1.2E-24 140.2 11.5 150 5-154 27-203 (410)
42 PRK11043 putative transporter; 99.8 3.8E-20 8.2E-25 140.4 10.4 149 6-156 31-179 (401)
43 PRK10642 proline/glycine betai 99.8 1.2E-19 2.5E-24 141.3 12.7 129 22-150 63-205 (490)
44 KOG2532 Permease of the major 99.8 6E-20 1.3E-24 141.0 10.7 149 8-158 65-216 (466)
45 TIGR00895 2A0115 benzoate tran 99.8 4.6E-20 1E-24 138.9 9.8 145 6-152 42-186 (398)
46 PRK10054 putative transporter; 99.8 7.7E-20 1.7E-24 138.7 10.6 144 7-154 34-178 (395)
47 PRK11646 multidrug resistance 99.8 1.2E-19 2.6E-24 137.9 11.6 143 7-153 37-180 (400)
48 PLN00028 nitrate transmembrane 99.8 1.4E-19 3.1E-24 140.3 12.1 151 6-157 61-218 (476)
49 KOG0254 Predicted transporter 99.8 2.6E-19 5.5E-24 140.0 13.1 141 16-158 89-230 (513)
50 PRK10133 L-fucose transporter; 99.8 3.3E-19 7E-24 137.0 12.7 121 6-126 51-174 (438)
51 PRK10207 dipeptide/tripeptide 99.8 3.8E-19 8.3E-24 138.1 13.2 137 8-146 42-182 (489)
52 PRK09952 shikimate transporter 99.8 6E-19 1.3E-23 135.5 13.9 126 24-149 72-211 (438)
53 TIGR00899 2A0120 sugar efflux 99.8 5.8E-19 1.3E-23 132.4 12.8 148 7-156 24-174 (375)
54 TIGR00924 yjdL_sub1_fam amino 99.8 9.6E-19 2.1E-23 135.6 14.3 139 11-151 43-185 (475)
55 cd06174 MFS The Major Facilita 99.8 5.4E-19 1.2E-23 130.8 11.6 144 8-153 26-169 (352)
56 KOG0255 Synaptic vesicle trans 99.8 5.9E-19 1.3E-23 138.2 12.3 140 9-153 111-250 (521)
57 PRK11273 glpT sn-glycerol-3-ph 99.8 4.1E-19 9E-24 136.9 11.1 145 7-155 55-205 (452)
58 PRK03633 putative MFS family t 99.8 8.8E-19 1.9E-23 132.3 12.3 121 6-126 31-151 (381)
59 TIGR00712 glpT glycerol-3-phos 99.8 8.1E-19 1.8E-23 134.8 12.2 145 11-157 56-205 (438)
60 TIGR00806 rfc RFC reduced fola 99.8 6.1E-19 1.3E-23 133.9 11.1 149 6-158 51-203 (511)
61 KOG3764 Vesicular amine transp 99.8 2.1E-19 4.7E-24 132.2 7.6 153 6-160 96-249 (464)
62 PRK15075 citrate-proton sympor 99.8 8.9E-19 1.9E-23 134.4 11.4 140 6-145 40-199 (434)
63 TIGR00892 2A0113 monocarboxyla 99.8 2.7E-19 5.9E-24 138.0 8.4 145 6-153 44-189 (455)
64 KOG0569 Permease of the major 99.8 2.1E-18 4.6E-23 131.9 13.1 141 18-158 62-205 (485)
65 PRK11195 lysophospholipid tran 99.8 1E-18 2.2E-23 132.5 11.3 134 8-148 30-164 (393)
66 TIGR00897 2A0118 polyol permea 99.8 2.3E-18 5E-23 130.9 13.3 132 9-142 41-177 (402)
67 TIGR00896 CynX cyanate transpo 99.8 2E-18 4.3E-23 129.1 12.2 140 6-148 25-165 (355)
68 PF00083 Sugar_tr: Sugar (and 99.8 2.1E-21 4.6E-26 149.2 -4.5 145 14-158 44-192 (451)
69 PRK09874 drug efflux system pr 99.8 2.1E-18 4.5E-23 130.9 11.4 145 9-156 42-191 (408)
70 PRK15034 nitrate/nitrite trans 99.8 6.1E-18 1.3E-22 129.5 12.9 148 9-157 63-231 (462)
71 KOG2615 Permease of the major 99.8 2.6E-18 5.7E-23 125.9 10.2 119 10-129 62-181 (451)
72 TIGR00805 oat sodium-independe 99.8 5.2E-19 1.1E-23 141.0 6.6 154 5-158 57-281 (633)
73 TIGR00880 2_A_01_02 Multidrug 99.8 2.8E-18 6E-23 111.4 8.2 132 23-156 5-136 (141)
74 TIGR00883 2A0106 metabolite-pr 99.8 2.3E-17 4.9E-22 124.1 13.9 139 13-151 27-184 (394)
75 PRK10489 enterobactin exporter 99.7 3.2E-18 6.8E-23 130.6 7.5 146 9-156 45-195 (417)
76 KOG2533 Permease of the major 99.7 1E-17 2.2E-22 129.3 10.1 154 7-160 72-229 (495)
77 PRK15462 dipeptide/tripeptide 99.7 6.9E-17 1.5E-21 124.9 13.9 142 8-151 37-182 (493)
78 PRK09584 tppB putative tripept 99.7 5.6E-17 1.2E-21 126.5 13.4 142 8-151 49-194 (500)
79 COG2223 NarK Nitrate/nitrite t 99.7 4.2E-17 9.1E-22 121.1 9.6 150 5-158 38-193 (417)
80 TIGR00889 2A0110 nucleoside tr 99.7 3.1E-16 6.8E-21 119.9 13.1 149 13-161 248-405 (418)
81 TIGR00901 2A0125 AmpG-related 99.7 3.5E-16 7.6E-21 117.0 13.0 147 7-155 14-175 (356)
82 PRK15011 sugar efflux transpor 99.7 3.1E-16 6.8E-21 118.9 12.6 146 7-155 42-191 (393)
83 PF06609 TRI12: Fungal trichot 99.7 2.4E-16 5.3E-21 123.4 11.3 143 9-155 72-214 (599)
84 PTZ00207 hypothetical protein; 99.7 2.1E-16 4.6E-21 124.2 10.7 144 6-155 52-202 (591)
85 PRK06814 acylglycerophosphoeth 99.7 5.8E-16 1.3E-20 131.0 13.6 135 16-152 52-189 (1140)
86 PRK11902 ampG muropeptide tran 99.7 1.3E-15 2.8E-20 115.9 12.6 141 9-153 27-177 (402)
87 cd06174 MFS The Major Facilita 99.7 1.1E-15 2.4E-20 113.1 11.7 143 10-154 205-348 (352)
88 PRK15011 sugar efflux transpor 99.7 2.2E-15 4.8E-20 114.3 12.8 145 8-155 244-388 (393)
89 PRK08633 2-acyl-glycerophospho 99.7 1.7E-15 3.6E-20 128.2 13.3 113 14-126 45-160 (1146)
90 TIGR00890 2A0111 Oxalate/Forma 99.7 1.2E-15 2.7E-20 114.0 11.2 140 9-150 233-374 (377)
91 PRK09528 lacY galactoside perm 99.7 1.6E-15 3.4E-20 116.0 11.6 143 12-156 258-401 (420)
92 PRK11551 putative 3-hydroxyphe 99.7 4.2E-15 9.2E-20 112.9 13.9 143 9-153 248-391 (406)
93 PRK11128 putative 3-phenylprop 99.6 3E-15 6.6E-20 113.1 12.5 138 8-151 31-172 (382)
94 PRK09556 uhpT sugar phosphate 99.6 1.9E-15 4.2E-20 117.0 11.6 148 8-155 286-446 (467)
95 PRK10642 proline/glycine betai 99.6 4.2E-15 9.2E-20 115.8 13.6 148 9-158 279-430 (490)
96 TIGR01299 synapt_SV2 synaptic 99.6 2.6E-15 5.6E-20 121.1 12.3 136 18-157 597-733 (742)
97 PRK05122 major facilitator sup 99.6 2.5E-15 5.4E-20 114.0 11.6 138 17-156 250-387 (399)
98 PRK09874 drug efflux system pr 99.6 4.2E-15 9E-20 112.9 12.6 137 18-156 260-396 (408)
99 PRK10489 enterobactin exporter 99.6 3.3E-15 7.2E-20 114.1 11.8 145 8-154 251-395 (417)
100 PRK11010 ampG muropeptide tran 99.6 7.9E-15 1.7E-19 114.3 12.7 144 9-156 40-193 (491)
101 TIGR00902 2A0127 phenyl propri 99.6 8.7E-15 1.9E-19 110.7 12.4 135 8-146 31-167 (382)
102 TIGR00882 2A0105 oligosacchari 99.6 9.9E-15 2.1E-19 110.8 12.4 144 8-156 30-181 (396)
103 COG0738 FucP Fucose permease [ 99.6 5.5E-15 1.2E-19 109.5 10.3 153 6-158 38-210 (422)
104 KOG0252 Inorganic phosphate tr 99.6 3E-15 6.5E-20 112.4 8.8 142 11-152 79-240 (538)
105 PRK03893 putative sialic acid 99.6 1.8E-14 3.9E-19 112.2 13.3 137 9-147 304-442 (496)
106 PRK12382 putative transporter; 99.6 7.2E-15 1.6E-19 111.3 10.1 136 18-155 251-386 (392)
107 TIGR00899 2A0120 sugar efflux 99.6 1.4E-14 2.9E-19 108.8 11.2 144 8-154 227-370 (375)
108 PRK03545 putative arabinose tr 99.6 2.8E-14 6.2E-19 108.1 12.6 147 8-158 233-380 (390)
109 PRK09528 lacY galactoside perm 99.6 3.2E-14 6.9E-19 108.8 11.3 145 8-158 38-191 (420)
110 TIGR00792 gph sugar (Glycoside 99.6 3.2E-14 7E-19 109.0 10.9 149 7-155 26-191 (437)
111 PRK03633 putative MFS family t 99.6 5.8E-14 1.3E-18 106.1 11.7 138 10-152 229-366 (381)
112 PF11700 ATG22: Vacuole efflux 99.6 1.3E-13 2.9E-18 106.7 13.3 148 8-157 309-467 (477)
113 PF05977 MFS_3: Transmembrane 99.5 6.9E-14 1.5E-18 109.3 11.2 146 8-155 246-391 (524)
114 KOG2504 Monocarboxylate transp 99.5 7.5E-15 1.6E-19 114.3 5.6 150 6-158 71-221 (509)
115 PRK03699 putative transporter; 99.5 8.7E-14 1.9E-18 105.6 11.0 144 8-154 233-376 (394)
116 TIGR00879 SP MFS transporter, 99.5 5.4E-14 1.2E-18 108.2 10.0 147 9-157 312-469 (481)
117 TIGR00902 2A0127 phenyl propri 99.5 2.5E-13 5.5E-18 102.7 12.2 139 9-151 233-372 (382)
118 TIGR00883 2A0106 metabolite-pr 99.5 1.6E-13 3.5E-18 103.2 10.2 136 9-146 248-389 (394)
119 TIGR00892 2A0113 monocarboxyla 99.5 8.5E-14 1.8E-18 107.6 8.9 142 9-152 269-415 (455)
120 TIGR00891 2A0112 putative sial 99.5 1.3E-13 2.8E-18 104.3 9.5 132 9-142 267-400 (405)
121 TIGR00893 2A0114 d-galactonate 99.5 4.3E-13 9.2E-18 100.7 12.2 143 8-153 243-394 (399)
122 PRK09952 shikimate transporter 99.5 7.7E-13 1.7E-17 101.8 13.8 146 9-155 279-430 (438)
123 COG3104 PTR2 Dipeptide/tripept 99.5 2.9E-13 6.3E-18 102.9 11.1 145 11-157 56-205 (498)
124 PRK10077 xylE D-xylose transpo 99.5 1.9E-13 4.1E-18 106.0 10.4 150 9-158 299-457 (479)
125 PRK15075 citrate-proton sympor 99.5 4.8E-13 1E-17 102.8 12.1 118 9-126 267-389 (434)
126 PF05977 MFS_3: Transmembrane 99.5 1.9E-13 4.1E-18 106.9 9.9 140 11-153 40-185 (524)
127 KOG0253 Synaptic vesicle trans 99.5 1.5E-13 3.3E-18 101.1 8.3 148 7-158 104-251 (528)
128 TIGR01301 GPH_sucrose GPH fami 99.5 5.3E-13 1.1E-17 103.1 11.6 152 8-159 31-219 (477)
129 PRK09705 cynX putative cyanate 99.5 4.5E-13 9.8E-18 101.7 10.9 146 10-159 234-382 (393)
130 PRK10504 putative transporter; 99.5 9.5E-13 2.1E-17 102.0 12.6 117 10-126 291-410 (471)
131 TIGR00897 2A0118 polyol permea 99.5 1.1E-12 2.4E-17 99.8 12.7 144 9-156 250-399 (402)
132 PRK11273 glpT sn-glycerol-3-ph 99.5 4E-13 8.7E-18 103.8 10.1 146 8-155 281-432 (452)
133 PRK11663 regulatory protein Uh 99.5 9.4E-13 2E-17 101.2 11.5 144 8-154 271-420 (434)
134 COG2807 CynX Cyanate permease 99.5 2.3E-12 5E-17 94.6 12.7 145 6-154 37-182 (395)
135 PRK15402 multidrug efflux syst 99.5 3.8E-12 8.1E-17 97.0 14.5 140 8-150 243-387 (406)
136 PRK11010 ampG muropeptide tran 99.5 2E-12 4.4E-17 100.9 13.1 147 9-157 251-402 (491)
137 PRK12307 putative sialic acid 99.4 1.8E-12 3.9E-17 99.2 12.1 128 10-139 260-389 (426)
138 COG2270 Permeases of the major 99.4 1.3E-12 2.8E-17 97.6 10.8 142 9-152 281-423 (438)
139 TIGR00889 2A0110 nucleoside tr 99.4 3.4E-12 7.4E-17 97.8 13.1 137 7-152 29-174 (418)
140 TIGR00882 2A0105 oligosacchari 99.4 3.3E-12 7.2E-17 97.0 12.7 141 12-154 250-391 (396)
141 TIGR00900 2A0121 H+ Antiporter 99.4 6.3E-13 1.4E-17 99.1 8.5 117 10-126 241-358 (365)
142 COG2814 AraJ Arabinose efflux 99.4 4.8E-12 1E-16 94.8 12.7 148 7-158 238-386 (394)
143 PRK11128 putative 3-phenylprop 99.4 4.7E-12 1E-16 95.8 12.5 136 10-149 234-370 (382)
144 PRK10406 alpha-ketoglutarate t 99.4 5.1E-12 1.1E-16 97.1 12.9 142 9-153 272-419 (432)
145 TIGR00792 gph sugar (Glycoside 99.4 4.1E-12 8.9E-17 97.4 10.7 113 14-126 255-375 (437)
146 PLN00028 nitrate transmembrane 99.4 1.3E-11 2.9E-16 96.0 13.0 146 9-158 281-433 (476)
147 TIGR00895 2A0115 benzoate tran 99.4 4E-12 8.6E-17 95.8 9.9 119 8-126 277-395 (398)
148 COG2271 UhpC Sugar phosphate p 99.4 7.3E-12 1.6E-16 93.7 10.4 152 8-161 280-437 (448)
149 PRK11902 ampG muropeptide tran 99.4 1.9E-11 4.1E-16 93.1 12.9 141 8-154 237-386 (402)
150 PF06813 Nodulin-like: Nodulin 99.4 1.8E-11 3.9E-16 87.0 11.6 120 5-126 26-152 (250)
151 TIGR02718 sider_RhtX_FptX side 99.4 1.3E-11 2.9E-16 93.5 11.7 141 9-151 236-384 (390)
152 PRK11195 lysophospholipid tran 99.4 1.9E-11 4.2E-16 92.9 12.3 118 8-126 233-351 (393)
153 TIGR00712 glpT glycerol-3-phos 99.4 8.2E-12 1.8E-16 96.1 10.4 150 8-159 279-434 (438)
154 TIGR00898 2A0119 cation transp 99.4 1.4E-11 3.1E-16 96.3 11.8 130 24-157 363-494 (505)
155 PRK11646 multidrug resistance 99.3 1.5E-11 3.3E-16 93.6 11.6 139 13-151 240-381 (400)
156 PRK08633 2-acyl-glycerophospho 99.3 1.8E-11 3.8E-16 104.0 12.3 136 9-146 261-398 (1146)
157 PRK10091 MFS transport protein 99.3 2.3E-11 5E-16 92.1 11.1 147 8-158 227-376 (382)
158 TIGR02718 sider_RhtX_FptX side 99.3 2E-11 4.3E-16 92.6 10.8 149 8-158 28-184 (390)
159 PRK09669 putative symporter Ya 99.3 1.8E-11 4E-16 94.3 10.4 148 8-155 37-201 (444)
160 TIGR00887 2A0109 phosphate:H+ 99.3 3E-11 6.5E-16 94.6 11.5 130 25-154 344-485 (502)
161 PRK10054 putative transporter; 99.3 2.5E-11 5.4E-16 92.4 10.8 138 10-150 238-376 (395)
162 TIGR00711 efflux_EmrB drug res 99.3 2.6E-11 5.6E-16 94.1 10.7 119 8-126 283-405 (485)
163 TIGR00788 fbt folate/biopterin 99.3 4.8E-11 1E-15 92.7 12.0 142 7-152 52-203 (468)
164 PRK14995 methyl viologen resis 99.3 3.6E-11 7.9E-16 94.0 10.6 119 8-126 287-408 (495)
165 PRK10213 nepI ribonucleoside t 99.3 1.1E-10 2.4E-15 88.8 12.8 140 8-150 244-383 (394)
166 TIGR00710 efflux_Bcr_CflA drug 99.3 1.9E-10 4.2E-15 86.6 13.9 131 8-142 234-370 (385)
167 TIGR02332 HpaX 4-hydroxyphenyl 99.3 4.4E-11 9.5E-16 91.5 9.9 133 11-145 274-408 (412)
168 PRK06814 acylglycerophosphoeth 99.2 1E-10 2.2E-15 99.5 11.8 137 8-146 253-410 (1140)
169 PRK10133 L-fucose transporter; 99.2 2E-10 4.4E-15 88.6 12.3 136 8-148 287-423 (438)
170 TIGR00901 2A0125 AmpG-related 99.2 4.3E-11 9.4E-16 89.6 8.3 105 11-115 239-355 (356)
171 TIGR01272 gluP glucose/galacto 99.2 1.8E-10 4E-15 85.0 11.4 132 9-145 171-302 (310)
172 TIGR00881 2A0104 phosphoglycer 99.2 2.2E-11 4.8E-16 91.1 6.6 131 8-140 244-379 (379)
173 PF05631 DUF791: Protein of un 99.2 1.9E-10 4.1E-15 84.8 10.9 85 9-94 62-146 (354)
174 TIGR00894 2A0114euk Na(+)-depe 99.2 2.8E-10 6.2E-15 88.2 12.4 148 8-156 289-448 (465)
175 PF07690 MFS_1: Major Facilita 99.2 8.2E-11 1.8E-15 87.4 8.8 115 8-122 234-352 (352)
176 PRK09848 glucuronide transport 99.2 2.6E-10 5.7E-15 88.1 11.5 119 8-126 256-383 (448)
177 PRK10473 multidrug efflux syst 99.2 9.4E-10 2E-14 83.4 14.1 116 8-125 231-347 (392)
178 COG2223 NarK Nitrate/nitrite t 99.2 1.4E-10 3.1E-15 86.7 9.1 152 7-161 245-404 (417)
179 KOG0253 Synaptic vesicle trans 99.2 1.1E-10 2.4E-15 86.3 8.4 132 24-159 389-520 (528)
180 PF01306 LacY_symp: LacY proto 99.2 1.8E-10 3.8E-15 87.3 9.6 146 13-160 256-402 (412)
181 KOG2325 Predicted transporter/ 99.2 2.7E-10 5.8E-15 87.5 10.4 148 10-158 65-229 (488)
182 TIGR00788 fbt folate/biopterin 99.2 4.3E-10 9.3E-15 87.4 11.5 119 8-126 280-408 (468)
183 TIGR00896 CynX cyanate transpo 99.2 2.3E-10 5.1E-15 85.6 9.8 116 10-126 226-343 (355)
184 PRK11102 bicyclomycin/multidru 99.1 2.3E-09 5.1E-14 80.7 14.1 117 9-126 223-344 (377)
185 KOG2504 Monocarboxylate transp 99.1 1.7E-10 3.6E-15 90.2 7.8 149 8-158 325-476 (509)
186 PF13347 MFS_2: MFS/sugar tran 99.1 1.6E-10 3.5E-15 88.7 7.7 153 8-160 29-200 (428)
187 PRK10429 melibiose:sodium symp 99.1 7.6E-10 1.6E-14 86.2 11.4 147 8-154 34-197 (473)
188 PRK11043 putative transporter; 99.1 3.8E-09 8.2E-14 80.4 14.9 117 9-126 231-352 (401)
189 KOG4686 Predicted sugar transp 99.1 7E-10 1.5E-14 79.7 9.7 143 7-151 291-436 (459)
190 TIGR00903 2A0129 major facilit 99.1 3E-09 6.5E-14 80.3 13.4 135 11-154 222-361 (368)
191 PF03825 Nuc_H_symport: Nucleo 99.1 5.8E-09 1.3E-13 79.5 13.8 113 9-123 30-143 (400)
192 PRK15034 nitrate/nitrite trans 99.1 2.2E-09 4.7E-14 82.9 11.0 138 23-162 293-458 (462)
193 KOG0569 Permease of the major 99.1 2.6E-09 5.6E-14 82.5 11.3 148 9-159 298-455 (485)
194 PF03825 Nuc_H_symport: Nucleo 99.1 3.9E-09 8.5E-14 80.4 11.9 141 13-153 240-390 (400)
195 COG0477 ProP Permeases of the 99.0 5.1E-09 1.1E-13 75.4 11.3 132 16-148 39-175 (338)
196 PRK09669 putative symporter Ya 99.0 5.4E-09 1.2E-13 80.7 11.4 111 16-126 264-383 (444)
197 PRK10429 melibiose:sodium symp 99.0 7.2E-09 1.6E-13 80.7 12.1 113 14-126 264-388 (473)
198 PF13347 MFS_2: MFS/sugar tran 99.0 5.6E-09 1.2E-13 80.3 11.1 111 16-126 260-379 (428)
199 TIGR00926 2A1704 Peptide:H+ sy 99.0 3.1E-08 6.8E-13 79.7 14.6 147 9-155 16-179 (654)
200 PRK11462 putative transporter; 99.0 1.7E-08 3.6E-13 78.5 12.5 146 8-153 37-199 (460)
201 PRK11652 emrD multidrug resist 99.0 3.4E-08 7.4E-13 75.0 14.0 117 9-126 236-355 (394)
202 TIGR00924 yjdL_sub1_fam amino 98.9 1.6E-08 3.4E-13 78.9 11.6 137 18-156 314-466 (475)
203 PRK09584 tppB putative tripept 98.9 2.3E-08 4.9E-13 78.5 11.8 134 18-151 318-472 (500)
204 KOG2563 Permease of the major 98.9 2.7E-08 5.8E-13 75.4 11.2 117 9-126 73-197 (480)
205 KOG3762 Predicted transporter 98.9 1.6E-09 3.5E-14 83.4 4.6 146 11-158 401-547 (618)
206 COG2807 CynX Cyanate permease 98.9 2.6E-08 5.7E-13 73.6 9.8 149 7-159 234-386 (395)
207 PRK10207 dipeptide/tripeptide 98.9 5E-08 1.1E-12 76.4 11.6 137 19-155 312-473 (489)
208 TIGR00886 2A0108 nitrite extru 98.8 9.4E-09 2E-13 77.0 6.5 109 8-117 253-365 (366)
209 KOG2816 Predicted transporter 98.8 3.5E-08 7.6E-13 76.3 9.1 129 24-159 70-200 (463)
210 TIGR00885 fucP L-fucose:H+ sym 98.8 8.5E-08 1.8E-12 73.5 10.9 131 12-145 265-399 (410)
211 PF03137 OATP: Organic Anion T 98.8 7.9E-10 1.7E-14 87.1 -0.3 153 6-158 28-250 (539)
212 PF05978 UNC-93: Ion channel r 98.8 7.8E-08 1.7E-12 63.8 8.9 114 12-126 33-146 (156)
213 PRK09848 glucuronide transport 98.8 1.7E-07 3.8E-12 72.5 12.0 119 8-126 36-172 (448)
214 PF03209 PUCC: PUCC protein; 98.8 5.5E-07 1.2E-11 67.8 14.0 147 7-153 235-393 (403)
215 COG2211 MelB Na+/melibiose sym 98.8 2.4E-07 5.2E-12 71.3 11.9 153 8-160 40-209 (467)
216 TIGR01272 gluP glucose/galacto 98.8 3.7E-08 8E-13 72.8 7.4 93 65-157 6-112 (310)
217 PF01306 LacY_symp: LacY proto 98.7 1.1E-07 2.4E-12 72.3 9.2 144 9-158 36-188 (412)
218 PRK11462 putative transporter; 98.7 3.9E-07 8.4E-12 70.9 12.3 111 16-126 263-382 (460)
219 PF11700 ATG22: Vacuole efflux 98.7 1.4E-06 3.1E-11 68.0 14.8 144 16-159 70-248 (477)
220 COG0738 FucP Fucose permease [ 98.7 2.8E-07 6.1E-12 69.1 9.9 137 10-151 266-402 (422)
221 PF03209 PUCC: PUCC protein; 98.7 7.9E-07 1.7E-11 67.0 12.2 117 9-126 8-146 (403)
222 TIGR01301 GPH_sucrose GPH fami 98.7 6.5E-07 1.4E-11 69.7 12.2 141 19-160 308-473 (477)
223 COG2211 MelB Na+/melibiose sym 98.7 1.5E-06 3.3E-11 67.0 13.7 116 11-126 267-391 (467)
224 KOG3764 Vesicular amine transp 98.6 6.5E-08 1.4E-12 72.4 5.4 138 16-155 306-451 (464)
225 PF03092 BT1: BT1 family; Int 98.6 4.4E-07 9.5E-12 70.1 9.3 150 7-159 16-176 (433)
226 KOG2532 Permease of the major 98.6 6.8E-07 1.5E-11 69.5 9.9 146 7-152 285-441 (466)
227 PRK15403 multidrug efflux syst 98.6 2.1E-06 4.4E-11 66.0 12.2 118 8-126 246-368 (413)
228 KOG0252 Inorganic phosphate tr 98.5 4.5E-08 9.7E-13 74.5 2.4 130 27-158 359-498 (538)
229 PF00083 Sugar_tr: Sugar (and 98.5 8.2E-10 1.8E-14 85.2 -7.3 131 24-156 294-434 (451)
230 PF06779 DUF1228: Protein of u 98.4 6.5E-07 1.4E-11 52.9 5.3 68 5-72 16-83 (85)
231 KOG3626 Organic anion transpor 98.4 4.4E-07 9.6E-12 73.0 5.5 154 6-159 122-344 (735)
232 KOG0254 Predicted transporter 98.3 5.6E-06 1.2E-10 65.3 10.1 103 19-121 332-447 (513)
233 KOG4686 Predicted sugar transp 98.3 4E-08 8.7E-13 70.8 -2.2 115 6-120 69-187 (459)
234 PF01770 Folate_carrier: Reduc 98.3 5.7E-05 1.2E-09 57.6 13.6 147 10-158 34-182 (412)
235 PF00854 PTR2: POT family; In 98.3 2.6E-06 5.7E-11 64.5 6.4 108 47-156 2-121 (372)
236 PF12832 MFS_1_like: MFS_1 lik 98.3 4.6E-06 1E-10 48.6 5.9 49 8-56 27-75 (77)
237 KOG2615 Permease of the major 98.2 1E-05 2.2E-10 60.6 7.5 119 8-126 289-409 (451)
238 KOG2533 Permease of the major 98.1 1.9E-05 4.2E-10 61.8 8.8 133 10-143 303-441 (495)
239 KOG0255 Synaptic vesicle trans 98.1 6.5E-05 1.4E-09 59.4 10.6 99 28-126 362-463 (521)
240 KOG2816 Predicted transporter 98.0 9.2E-05 2E-09 57.7 10.4 119 7-126 268-387 (463)
241 PF03092 BT1: BT1 family; Int 97.9 0.0001 2.2E-09 57.1 9.6 149 11-159 250-414 (433)
242 PRK15462 dipeptide/tripeptide 97.9 0.00029 6.2E-09 55.4 11.6 109 18-126 310-435 (493)
243 COG2270 Permeases of the major 97.9 0.00032 7E-09 53.4 11.2 142 15-156 57-218 (438)
244 TIGR00769 AAA ADP/ATP carrier 97.9 0.00081 1.8E-08 52.6 13.6 113 14-126 41-186 (472)
245 PF06609 TRI12: Fungal trichot 97.7 0.00019 4.1E-09 57.5 7.8 110 17-126 350-462 (599)
246 KOG1237 H+/oligopeptide sympor 97.7 0.00091 2E-08 53.6 11.0 143 9-153 66-240 (571)
247 KOG2563 Permease of the major 97.6 0.0004 8.8E-09 53.3 8.0 115 12-126 297-416 (480)
248 PF02487 CLN3: CLN3 protein; 97.5 0.0034 7.5E-08 48.0 12.1 133 12-151 55-188 (402)
249 PTZ00207 hypothetical protein; 97.5 0.00032 6.9E-09 56.3 6.6 133 21-155 396-549 (591)
250 KOG0637 Sucrose transporter an 97.4 7.9E-05 1.7E-09 57.2 1.5 118 9-126 60-200 (498)
251 KOG3098 Uncharacterized conser 97.3 0.0025 5.5E-08 49.6 8.8 103 22-125 56-158 (461)
252 PF06963 FPN1: Ferroportin1 (F 97.2 0.0084 1.8E-07 46.5 10.9 127 10-136 287-423 (432)
253 COG3104 PTR2 Dipeptide/tripept 97.1 0.005 1.1E-07 48.1 9.1 138 18-155 326-484 (498)
254 PF02487 CLN3: CLN3 protein; 97.0 0.0056 1.2E-07 46.9 8.3 112 11-126 276-392 (402)
255 KOG3098 Uncharacterized conser 96.9 0.014 3.1E-07 45.5 10.0 104 20-124 283-407 (461)
256 PRK03612 spermidine synthase; 96.5 0.15 3.3E-06 40.8 13.1 114 11-126 45-166 (521)
257 KOG3762 Predicted transporter 96.5 0.005 1.1E-07 48.6 4.5 59 8-66 38-97 (618)
258 KOG1330 Sugar transporter/spin 96.1 0.011 2.4E-07 45.9 4.4 114 13-126 280-407 (493)
259 KOG4332 Predicted sugar transp 96.0 0.0036 7.7E-08 45.5 1.5 89 9-98 65-154 (454)
260 KOG3574 Acetyl-CoA transporter 95.1 0.23 4.9E-06 38.2 8.3 94 32-125 79-189 (510)
261 KOG1479 Nucleoside transporter 94.4 0.44 9.5E-06 36.7 8.5 110 15-125 281-399 (406)
262 PF03219 TLC: TLC ATP/ADP tran 94.2 2.3 4.9E-05 33.9 13.0 113 14-126 56-201 (491)
263 TIGR00806 rfc RFC reduced fola 94.0 0.53 1.2E-05 37.3 8.4 96 19-114 301-398 (511)
264 TIGR00805 oat sodium-independe 93.8 0.1 2.2E-06 42.8 4.4 53 8-60 358-413 (633)
265 KOG3810 Micronutrient transpor 93.8 0.079 1.7E-06 40.0 3.3 148 11-159 36-184 (433)
266 KOG4332 Predicted sugar transp 93.4 2.2 4.7E-05 31.6 10.0 134 17-152 283-425 (454)
267 PF01770 Folate_carrier: Reduc 93.1 1.3 2.7E-05 34.5 9.0 96 18-113 287-384 (412)
268 TIGR00939 2a57 Equilibrative N 92.7 1.1 2.3E-05 35.2 8.3 60 67-126 370-429 (437)
269 KOG2325 Predicted transporter/ 91.9 0.092 2E-06 41.4 1.6 75 76-152 395-469 (488)
270 KOG3880 Predicted small molecu 91.7 0.59 1.3E-05 35.0 5.3 70 57-126 330-399 (409)
271 PF06963 FPN1: Ferroportin1 (F 91.2 6.2 0.00013 31.0 12.2 30 26-55 48-77 (432)
272 TIGR00939 2a57 Equilibrative N 90.2 7.7 0.00017 30.5 10.8 100 21-125 50-157 (437)
273 PF13000 Acatn: Acetyl-coenzym 90.0 5.6 0.00012 31.9 9.6 53 73-125 122-174 (544)
274 COG3202 ATP/ADP translocase [E 89.6 9.3 0.0002 30.5 13.2 114 13-126 58-205 (509)
275 KOG3097 Predicted membrane pro 89.3 2.4 5.1E-05 32.1 6.7 97 27-124 69-176 (390)
276 KOG3880 Predicted small molecu 88.7 3.2 6.9E-05 31.3 7.1 136 11-152 57-193 (409)
277 KOG0637 Sucrose transporter an 88.1 0.42 9.1E-06 37.4 2.4 67 18-84 334-400 (498)
278 PF13000 Acatn: Acetyl-coenzym 87.1 4.4 9.5E-05 32.5 7.3 53 72-124 408-460 (544)
279 COG5336 Uncharacterized protei 86.1 5.1 0.00011 24.8 5.7 31 21-51 47-78 (116)
280 PF01733 Nucleoside_tran: Nucl 85.9 0.22 4.8E-06 37.0 -0.2 104 22-125 188-304 (309)
281 PF11947 DUF3464: Protein of u 85.4 8.6 0.00019 25.6 7.3 80 38-120 56-145 (153)
282 KOG3810 Micronutrient transpor 85.4 5.6 0.00012 30.5 6.9 94 21-114 276-371 (433)
283 KOG1237 H+/oligopeptide sympor 83.6 3.2 7E-05 33.8 5.4 59 68-126 457-515 (571)
284 KOG3626 Organic anion transpor 83.5 3.7 8.1E-05 34.4 5.7 56 71-126 588-644 (735)
285 PF07672 MFS_Mycoplasma: Mycop 83.1 16 0.00034 26.7 8.7 98 22-120 147-254 (267)
286 COG1268 BioY Uncharacterized c 79.9 7.7 0.00017 26.6 5.4 23 23-45 89-111 (184)
287 PF07672 MFS_Mycoplasma: Mycop 79.0 2.7 5.9E-05 30.6 3.2 57 101-157 2-61 (267)
288 TIGR00880 2_A_01_02 Multidrug 79.0 10 0.00022 23.4 5.7 36 18-53 89-124 (141)
289 TIGR00769 AAA ADP/ATP carrier 77.5 35 0.00076 27.3 11.9 71 77-149 274-345 (472)
290 KOG1479 Nucleoside transporter 74.0 41 0.00088 26.4 11.2 35 68-103 116-150 (406)
291 PF02632 BioY: BioY family; I 68.6 23 0.00049 23.4 5.4 25 23-47 60-84 (148)
292 PF02694 UPF0060: Uncharacteri 68.0 16 0.00035 22.6 4.2 50 16-65 54-103 (107)
293 KOG3574 Acetyl-CoA transporter 63.8 17 0.00037 28.5 4.5 117 9-125 293-425 (510)
294 PRK02237 hypothetical protein; 63.0 30 0.00066 21.5 4.7 48 17-64 57-104 (109)
295 PF06912 DUF1275: Protein of u 61.9 51 0.0011 22.9 10.1 14 26-39 56-69 (209)
296 COG4769 Predicted membrane pro 60.9 12 0.00027 25.2 2.9 49 27-81 84-132 (181)
297 TIGR00926 2A1704 Peptide:H+ sy 60.6 42 0.0009 28.1 6.6 59 68-126 564-622 (654)
298 PF07760 DUF1616: Protein of u 60.2 67 0.0015 23.7 9.0 54 72-126 22-75 (287)
299 KOG3097 Predicted membrane pro 56.3 15 0.00032 28.1 3.0 73 13-85 307-383 (390)
300 COG2076 EmrE Membrane transpor 54.3 51 0.0011 20.5 6.2 50 35-84 19-69 (106)
301 TIGR00383 corA magnesium Mg(2+ 48.8 47 0.001 24.7 4.9 51 107-158 261-312 (318)
302 PRK03818 putative transporter; 48.3 1.5E+02 0.0033 24.3 9.3 84 16-100 435-520 (552)
303 PF13493 DUF4118: Domain of un 47.0 29 0.00063 20.9 3.0 21 26-46 85-105 (105)
304 PF03137 OATP: Organic Anion T 43.3 7.9 0.00017 31.4 0.0 120 7-126 332-509 (539)
305 PF06645 SPC12: Microsomal sig 43.2 65 0.0014 18.6 5.1 17 27-43 18-34 (76)
306 TIGR02230 ATPase_gene1 F0F1-AT 43.0 79 0.0017 19.4 5.8 30 27-56 53-83 (100)
307 PRK09546 zntB zinc transporter 42.8 53 0.0011 24.6 4.3 21 135-155 295-315 (324)
308 COG0598 CorA Mg2+ and Co2+ tra 42.7 32 0.00069 25.9 3.1 25 135-159 293-317 (322)
309 PF11299 DUF3100: Protein of u 42.0 12 0.00026 26.8 0.7 96 7-124 130-225 (241)
310 TIGR03802 Asp_Ala_antiprt aspa 41.9 2E+02 0.0043 23.7 8.8 83 17-101 451-534 (562)
311 PF04474 DUF554: Protein of un 40.4 1.4E+02 0.003 21.4 6.0 53 26-78 12-64 (226)
312 PF06826 Asp-Al_Ex: Predicted 38.8 1.2E+02 0.0027 20.5 9.0 83 15-99 55-138 (169)
313 TIGR00836 amt ammonium transpo 37.6 2E+02 0.0044 22.6 7.7 33 94-126 300-332 (403)
314 PF03219 TLC: TLC ATP/ADP tran 36.0 2.4E+02 0.0051 22.9 11.7 68 79-148 292-360 (491)
315 PF07456 Hpre_diP_synt_I: Hept 35.6 1.3E+02 0.0029 19.9 5.0 28 25-52 70-97 (148)
316 TIGR01625 YidE_YbjL_dupl AspT/ 35.3 1.4E+02 0.003 19.9 6.2 34 16-49 56-89 (154)
317 PF00854 PTR2: POT family; In 34.9 1.3E+02 0.0029 22.8 5.5 49 18-66 74-122 (372)
318 COG2119 Predicted membrane pro 34.3 1.6E+02 0.0035 20.4 5.2 34 26-59 144-177 (190)
319 PF13940 Ldr_toxin: Toxin Ldr, 34.2 59 0.0013 15.5 2.5 19 24-42 16-34 (35)
320 COG1811 Uncharacterized membra 33.4 1.8E+02 0.0039 20.8 6.2 53 26-78 13-65 (228)
321 PF02990 EMP70: Endomembrane p 32.6 1.3E+02 0.0028 24.4 5.3 28 99-126 291-318 (521)
322 TIGR00801 ncs2 uracil-xanthine 32.1 1.8E+02 0.0038 22.9 5.8 34 9-43 31-64 (415)
323 PRK11085 magnesium/nickel/coba 31.9 1.1E+02 0.0023 23.1 4.4 45 107-152 259-304 (316)
324 PRK10692 hypothetical protein; 31.8 1.2E+02 0.0025 18.1 3.7 17 45-61 3-19 (92)
325 PRK14230 camphor resistance pr 31.7 1.4E+02 0.003 18.9 5.7 47 53-99 37-83 (119)
326 PLN02332 membrane bound O-acyl 31.6 2.7E+02 0.0059 22.3 8.2 30 46-75 341-370 (465)
327 COG1742 Uncharacterized conser 31.4 93 0.002 19.3 3.3 39 22-60 61-99 (109)
328 PF09605 Trep_Strep: Hypotheti 30.5 1.8E+02 0.004 19.9 6.8 52 27-81 39-90 (186)
329 PRK04972 putative transporter; 30.0 3.2E+02 0.0069 22.6 9.4 95 16-112 445-540 (558)
330 PF11298 DUF3099: Protein of u 29.1 1.2E+02 0.0026 17.4 4.4 30 39-68 10-39 (73)
331 PLN02878 homogentisate phytylt 29.1 1.9E+02 0.004 21.6 5.1 20 42-61 195-214 (280)
332 PF08611 DUF1774: Fungal prote 28.5 1.5E+02 0.0032 18.2 5.5 43 103-153 27-69 (97)
333 PF11712 Vma12: Endoplasmic re 28.3 1.7E+02 0.0037 19.0 5.4 23 19-41 78-101 (142)
334 PRK11099 putative inner membra 27.7 3.1E+02 0.0066 21.6 9.7 35 71-105 286-320 (399)
335 PRK14199 camphor resistance pr 27.1 1.8E+02 0.0038 18.7 7.6 25 76-100 69-93 (128)
336 PF04281 Tom22: Mitochondrial 27.1 1.4E+02 0.0031 19.5 3.8 23 93-115 59-81 (137)
337 KOG1278 Endosomal membrane pro 26.1 1.9E+02 0.0041 23.9 4.9 15 71-85 367-381 (628)
338 PRK12887 ubiA tocopherol phyty 26.0 2.8E+02 0.006 20.8 5.7 22 95-116 273-294 (308)
339 PRK14214 camphor resistance pr 25.7 1.8E+02 0.0039 18.3 6.5 48 53-100 39-86 (118)
340 PF10183 ESSS: ESSS subunit of 25.2 75 0.0016 19.6 2.2 22 132-153 55-76 (105)
341 PF10762 DUF2583: Protein of u 25.2 1.6E+02 0.0034 17.5 3.5 17 45-61 3-19 (89)
342 PF11283 DUF3084: Protein of u 25.2 1.5E+02 0.0033 17.3 3.4 18 35-52 19-36 (79)
343 PRK14228 camphor resistance pr 25.2 1.9E+02 0.0041 18.4 7.5 47 53-99 41-87 (122)
344 PF05631 DUF791: Protein of un 24.4 3.4E+02 0.0073 21.0 12.6 115 11-125 153-298 (354)
345 PRK14232 camphor resistance pr 24.3 2E+02 0.0042 18.2 6.6 23 77-99 61-83 (120)
346 PF08080 zf-RNPHF: RNPHF zinc 24.2 26 0.00055 16.9 0.0 8 40-47 3-10 (36)
347 COG5336 Uncharacterized protei 23.0 2.1E+02 0.0044 18.0 5.9 37 100-136 37-75 (116)
348 PF05653 Mg_trans_NIPA: Magnes 22.6 91 0.002 23.3 2.6 48 104-152 240-287 (300)
349 PF07178 TraL: TraL protein; 22.3 1.9E+02 0.0041 17.3 4.3 31 3-33 7-38 (95)
350 PF09930 DUF2162: Predicted tr 22.1 3.1E+02 0.0066 19.7 5.5 47 10-59 125-171 (224)
351 PF12911 OppC_N: N-terminal TM 21.9 86 0.0019 16.4 1.8 22 39-60 8-29 (56)
352 PF15061 DUF4538: Domain of un 21.8 49 0.0011 18.0 0.8 20 135-154 4-23 (58)
353 PRK14205 camphor resistance pr 21.7 2.2E+02 0.0048 17.9 6.6 48 53-100 38-85 (118)
354 TIGR03173 pbuX xanthine permea 21.4 4E+02 0.0087 20.8 8.9 94 9-103 21-115 (406)
355 PF00737 PsbH: Photosystem II 21.1 1.5E+02 0.0032 15.7 2.5 26 37-62 16-41 (52)
356 PF12805 FUSC-like: FUSC-like 21.1 3.4E+02 0.0074 19.9 8.0 19 67-85 21-39 (284)
357 PRK14229 camphor resistance pr 21.0 2.2E+02 0.0048 17.6 6.3 23 77-99 57-79 (108)
358 TIGR01667 YCCS_YHJK integral m 21.0 5.4E+02 0.012 22.1 9.1 52 34-85 41-97 (701)
359 COG3238 Uncharacterized protei 20.8 1.4E+02 0.003 19.9 2.9 17 28-44 101-117 (150)
360 PF10785 NADH-u_ox-rdase: NADH 20.1 2.1E+02 0.0045 17.0 4.5 38 29-66 31-75 (86)
361 TIGR01666 YCCS hypothetical me 20.0 5.7E+02 0.012 22.0 9.3 53 33-85 40-97 (704)
No 1
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.7e-23 Score=155.61 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=144.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
+++.+++|.|..+.|+..+.+..+..+++++...++||+.||++++..+.+++++.+.+.+++|++++.++|++.|+..|
T Consensus 37 p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G 116 (394)
T COG2814 37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG 116 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
..++...+...+..|+++|++++++...+..++.++|.+++. .+.+.+|||..|++.+..+++..+......|
T Consensus 117 ~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt--~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 117 VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT--FLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999988 6677889999999998888887776665555
No 2
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.90 E-value=6e-23 Score=156.45 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=134.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.+++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++..++.....+++|++.+++.|++.|++.+.
T Consensus 33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 112 (412)
T TIGR02332 33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAG 112 (412)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---CCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---IKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
..+....++.|++|+++|++++++++....+|..+++.+++ +.. ..+..+||+.|++.++..++..+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 113 FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999999987 432 124569999999988777665444433
No 3
>PRK03545 putative arabinose transporter; Provisional
Probab=99.90 E-value=5.2e-23 Score=155.62 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=134.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
+++++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++..+++..+.+++|++.+++.|++.|++.+
T Consensus 33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~ 112 (390)
T PRK03545 33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHA 112 (390)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
...+...+++.|++|+|+|++++++++.+.++|..++|.+++ ...+..+||+.|++.++..++..+....
T Consensus 113 ~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~--~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 113 IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR--VIGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999987 3335569999999988877665544333
No 4
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.89 E-value=6.7e-23 Score=154.01 Aligned_cols=152 Identities=14% Similarity=0.016 Sum_probs=122.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
+++++++|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+++.|++.|++.+
T Consensus 15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~ 94 (368)
T TIGR00903 15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQP 94 (368)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhH
Confidence 34678899999999999999999999999999999999999998766655554443322333789999999999999998
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
. ........+|++|+|+|++++++.+.+..+|..+++.++. ...++.+||+.|++.+++.++..+...+..+
T Consensus 95 ~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~--~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 95 F-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGL--KIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred H-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6 4556666799999999999999999999999999999988 3334679999999877777665554444333
No 5
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=8.5e-25 Score=163.07 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=139.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+.++++|.++++.|++.+.+.+...+++|++|+++||++||+++..+.+++.++.+...++..+|++.++|.+.|+|.+.
T Consensus 58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs 137 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS 137 (493)
T ss_pred HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
..+..+.+++|.+|.++|+++++++++...+|..+|.+++. +..... .||+.|...+++.++..++.+++.
T Consensus 138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988887 333332 399999999999888877766555
No 6
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.89 E-value=1e-22 Score=158.44 Aligned_cols=153 Identities=14% Similarity=0.049 Sum_probs=133.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
+++.+++|.+.++.+|..+.+.++...+.++.|+++||+|||++++.+.++..++++.+.+++|++.++++|+++|++.+
T Consensus 30 p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~ 109 (495)
T PRK14995 30 PTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAA 109 (495)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 85 FGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
...+.....+.+.+ |+++|+++++++.....+|..++|.+++ ...++.+||+.|++.....++..++..+..+
T Consensus 110 ~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg--~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 110 MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG--ILLEHFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88887777776665 6799999999999999999999999998 5556679999999877666555444433333
No 7
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.89 E-value=3.1e-22 Score=148.60 Aligned_cols=146 Identities=23% Similarity=0.359 Sum_probs=131.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
...+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+...+++|.+.+++.|++.|++.+.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF 101 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence 35678999999999999999999999999999999999999999999999999866655657888999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
..+....++.|++|+|+|++.+++.+....+|..++|.+++ ...+..+||+.|++.++..++..++
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGG--FLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhh--hhhhccccccccccccchhhhhhhh
Confidence 99999999999999999999999999999999999999988 5556678999999988888777653
No 8
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.89 E-value=1.9e-22 Score=152.89 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=131.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++.+++|.++++.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+.+++|++.+++.|++.|++.+.
T Consensus 45 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 124 (394)
T PRK10213 45 PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGG 124 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHH
Confidence 45678999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
..+....++.|++|+|+|++++++.....++|..++|.+++ ...+.++||+.|++.++..++..
T Consensus 125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~--~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS--FLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 44456799999998776655443
No 9
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.88 E-value=7.9e-22 Score=149.46 Aligned_cols=142 Identities=16% Similarity=0.081 Sum_probs=125.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
+++++++|.|.++.++..+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+.+++|++.+++.|++.|++.+
T Consensus 33 p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~ 112 (393)
T PRK09705 33 PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIG 112 (393)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHH
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASI 149 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~ 149 (172)
...+....++.|++| ++|++++++++.+...|..+++.++. ...++ .+||..+...++..++
T Consensus 113 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~--~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 113 IIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITP--WLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999987 78999999999988888888888877 22233 3799987765555443
No 10
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.87 E-value=5.2e-22 Score=151.34 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=130.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++.++++.+.++.++..+.+.++..+++++.|+++||+|||++++.+.++..++...+..++|++.++++|+++|++.+.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~ 120 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICF 120 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..+....++.|.+|+++|++.+++.+....+|..++|.+++ ...++.+||+.|++.++..++..+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~--~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 121 IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGA--ALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 66777788999999999999999999999999999999988 233456899999988877666554433
No 11
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.87 E-value=6.3e-22 Score=149.41 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=132.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
..++++|.|.++.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+.+++|++.+.+.|++.|++.+.
T Consensus 28 ~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~ 107 (382)
T PRK10091 28 ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGA 107 (382)
T ss_pred HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..+.....+.|++|+++|++.++++..+..+|..++|.+++ ...+..+||+.|.+.++..++..+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 108 FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT--YLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH--HHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999987 444556899999998877665554433
No 12
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.87 E-value=2.2e-22 Score=150.96 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=133.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
..++++|.|+++.+++.+...++..++.++.|+++||+|||+++..+.++..++.....++++++.+.+.|++.|++.+.
T Consensus 19 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 98 (399)
T TIGR00893 19 MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAP 98 (399)
T ss_pred HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
..+....++.|++|+|+|++.+++.+....+|..++|.+++ ...+..+||+.|.+.++..++..+...+
T Consensus 99 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 99 FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG--WILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH--HHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999987 3334568999999887776665554433
No 13
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.87 E-value=4.1e-22 Score=154.25 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=135.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++.+++|.++++.++..+.+.++..++.++.|+++||+|||++++.+.++..++.+.+..++|++.+++.|++.|++.+.
T Consensus 27 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 106 (485)
T TIGR00711 27 TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGP 106 (485)
T ss_pred HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
..+....++.|.+|+++|++++++++....+|..++|.+++ ...++.+||+.|++.....++..+...+.
T Consensus 107 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 176 (485)
T TIGR00711 107 LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG--WIIENYHWRWIFLINVPIGIIVVVVAFFI 176 (485)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHh--HhccCcCceehhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 55567799999998777666555444433
No 14
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.87 E-value=3.3e-21 Score=149.13 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=125.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc------------chhHHHHHHH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA------------FNIYMLIFGR 76 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 76 (172)
.+++.++++.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+...+. +.++.+++.|
T Consensus 48 ~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 127 (479)
T PRK10077 48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR 127 (479)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence 3558999999999999999999999999999999999999999999988877665542 2256778999
Q ss_pred HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-----CCCCcchHHHHHhhhHHHHHH
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-----IKGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-----~~~~~~w~~~~~~~~~~~~~~ 150 (172)
++.|++.+...+...++++|++|+++|++.+++.+.+..+|..+++.++. +.. ..+.++||+.|++.++..++.
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 207 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF 207 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887765 321 224569999999887777665
Q ss_pred HHhhhhhc
Q 041620 151 TIGASDWW 158 (172)
Q Consensus 151 ~~~~~~~~ 158 (172)
.+..++.+
T Consensus 208 ~~~~~~l~ 215 (479)
T PRK10077 208 LMLLYFVP 215 (479)
T ss_pred HHHHHcCC
Confidence 54444433
No 15
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.87 E-value=7.9e-22 Score=149.05 Aligned_cols=146 Identities=20% Similarity=0.232 Sum_probs=128.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+.++++|.|+++.+++.+...++..+++++.|+++||+|||++++.+.++.+++.+...+.++++.+++.|++.|++.+.
T Consensus 37 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 116 (405)
T TIGR00891 37 EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGG 116 (405)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh
Confidence 35678999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
..+....++.|++|+++|++++++.+.+..+|..+++.+++ +....+ .+||+.|.+.++..++..+
T Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 117 EYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALW 183 (405)
T ss_pred hhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 322211 2599999886655544433
No 16
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.87 E-value=1.5e-21 Score=149.71 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=130.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+..+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+....+++++.+.+.|++.|++.+.
T Consensus 48 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~ 127 (434)
T PRK11663 48 EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGW 127 (434)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999888999999999999999999998
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
..+....++.|++|+++|++++++++.+.++|..++|.+.+ ...+.++||+.|++.++..++..+
T Consensus 128 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~--~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 128 GWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG--AIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcccHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999887 333456899999987776654443
No 17
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.87 E-value=7.8e-22 Score=148.34 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=133.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
..++++|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+.....++++.+.+.|++.|++.+.
T Consensus 30 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 109 (385)
T TIGR00710 30 EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASA 109 (385)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhH
Confidence 45678999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
..+....++.|++|+|+|++.+++.+....+|..++|.+++ ...+..+||..+++.++..++..+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 110 GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG--YILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 3334568999998877766655544433
No 18
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.87 E-value=1.9e-21 Score=148.46 Aligned_cols=138 Identities=17% Similarity=0.245 Sum_probs=126.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
+++++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+...++++++.+++.|++.|++.+..
T Consensus 44 i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~ 123 (426)
T PRK12307 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGE 123 (426)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHH
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAP 146 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 146 (172)
.+....++.|++|+|+|++++++.+.+..+|..+++.+.. ...+..+||+.|++..+.
T Consensus 124 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~--~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 124 YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP--SFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHH--HHcccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876 444567999999875544
No 19
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.86 E-value=1.1e-21 Score=157.49 Aligned_cols=152 Identities=18% Similarity=0.118 Sum_probs=132.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
++++++++..+.+++.+.+.++.+++++++|+++||+|||+++++++++.+++.++..++++++.++++|++.|++.+..
T Consensus 193 i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~ 272 (742)
T TIGR01299 193 AEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272 (742)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C---------CCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I---------KGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~---------~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
.+...+++.|++|+++|++.+++.+.+..+|.++++.++. +.. . ....+||+.+++.+++.++.++..+
T Consensus 273 ~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765 221 1 1224799999988887766655544
Q ss_pred hhc
Q 041620 156 DWW 158 (172)
Q Consensus 156 ~~~ 158 (172)
+.+
T Consensus 353 ~lP 355 (742)
T TIGR01299 353 FMP 355 (742)
T ss_pred HcC
Confidence 444
No 20
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.86 E-value=1.3e-21 Score=146.23 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=128.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
..++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++...+.+++|++.+.+.|++.|++.+.
T Consensus 28 ~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (377)
T TIGR00890 28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGI 107 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.++.....+.|++| |+|+++.++.+.+..+|..+++.+.. ...+..+||+.|++.++..++..+...+
T Consensus 108 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 108 AYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLIT--SVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHH--HHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888886 67999999999999999877666654 2334568999999888877666554443
No 21
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.86 E-value=2e-21 Score=147.46 Aligned_cols=146 Identities=20% Similarity=0.215 Sum_probs=129.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
...+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.+...+.++++.+.+.|++.|++.+.
T Consensus 40 ~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 119 (406)
T PRK11551 40 RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG 119 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHH
Confidence 34577899999999999999999999999999999999999999999998888888888889999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
..+....++.|++|+|+|++++++.+....+|..+++.++. ...+..+|+..|++.++..++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV--LAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876 3445668999998876655544433
No 22
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.86 E-value=2.5e-21 Score=144.33 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=127.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc-----hhHHHHHHHHHHhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF-----NIYMLIFGRLLLGVGI 83 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~ 83 (172)
.+.+.++.+.+++.+...++..+++++.|+++||+|||++++.+.++..++.....+.+ +++.+++.|++.|++.
T Consensus 27 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 106 (365)
T TIGR00900 27 LAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQ 106 (365)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999988888777776665 8999999999999999
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
+...+...+++.|++|+|+|++.+++.+....+|..++|.+++ ...+..+||+.+++.++..++..+....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 107 AFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG--LMYATLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988 3334568999998877766555444333
No 23
>PRK03699 putative transporter; Provisional
Probab=99.86 E-value=6e-21 Score=144.64 Aligned_cols=146 Identities=10% Similarity=0.098 Sum_probs=128.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++++++|.|+++.++..+...++..+++++.|++.||+|||+++..+.++.+++.....++++++.+.+.|++.|++.+.
T Consensus 32 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~ 111 (394)
T PRK03699 32 PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGI 111 (394)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHh
Confidence 45678999999999999999999999999999999999999999999999999998888899999999999999999998
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
..+....++.|.+|+++|++.++..+....+|..++|.+.+ +. .+..+||+.|.+.++..++..++
T Consensus 112 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 112 TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL--ARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999988888889889988876 21 23458999999877776655443
No 24
>TIGR00898 2A0119 cation transport protein.
Probab=99.86 E-value=4e-21 Score=149.69 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=131.5
Q ss_pred CCCCCCCCC---hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhh
Q 041620 6 KVSNYSKFD---SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 6 ~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 82 (172)
.+.++++++ +.+.++..+.+.++..+++++.|+++||+|||++++.+.++..++.+...++++++.+.+.|++.|++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~ 193 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMG 193 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 456788888 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
.+...+....++.|++|+++|++..++.+.+..+|..++|.++. ... +||+.+++.+++.++..+..++.
T Consensus 194 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~~~---~wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 194 IGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY--FIP---DWRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred ccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhh---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999876 222 49999999888777665554433
No 25
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.86 E-value=1.4e-21 Score=146.25 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=130.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
..++++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+.
T Consensus 20 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 99 (379)
T TIGR00881 20 YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGM 99 (379)
T ss_pred HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHH-HHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANL-LNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..+...+++.|++|+|+|++.+++.+....+|..++|. ++. ...+..+||+.|++.++..++..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 100 GWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF--GIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred cCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH--HHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999994 544 223345899999887766655444433
No 26
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.86 E-value=2.7e-21 Score=145.33 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=131.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+..+++|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++...+...++++.+.+.|++.|++.+.
T Consensus 16 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~ 95 (377)
T PRK11102 16 VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAA 95 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..+....++.|.+|+|+|++.+++.+....+|..++|.+++ ...+..+||+.|++.++..++..+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 96 ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG--WLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 333456899999887776665544433
No 27
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.8e-21 Score=144.16 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=141.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
+.+.++.++|.+|.|.+.+.+.+.+.++.++.|.++||.++|+.+.++++++++..++++++++.+.+.++-++.|..+|
T Consensus 53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg 132 (448)
T COG2271 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQG 132 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH--hhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN--CTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
...|++...+..++|+++||+..++++.+.++|+.+.|.+. + ....+.+||..|+..++.+++..+..++..+
T Consensus 133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la--~~~~~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA--FFAFHGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH--HHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999997 5 4445568999999999998888776665553
No 28
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.85 E-value=3.2e-21 Score=148.93 Aligned_cols=148 Identities=16% Similarity=0.066 Sum_probs=129.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~ 86 (172)
+++++++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+..... .+++.+++.|++.|++.+..
T Consensus 69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~ 148 (465)
T TIGR00894 69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV 148 (465)
T ss_pred CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence 3789999999999999999999999999999999999999999999888887776443 56788999999999999999
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.+....++.|++|+++|++++++.+.+..+|..++|.+.+ ...+. .+||..|++.++..++..+..+...
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~--~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISG--WLCESWGGWPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987 33344 3899999998887766655444433
No 29
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.85 E-value=1.5e-20 Score=146.56 Aligned_cols=148 Identities=21% Similarity=0.246 Sum_probs=126.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch------hHHHHHHHHHHhhhhh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN------IYMLIFGRLLLGVGIG 84 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~ 84 (172)
.+.++.+.+++.+...++..+++++.|+++||+|||+++..+.++..++..+..++++ ++.+++.|++.|++.+
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999999999999999999999999999999988887777654 6789999999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C-------------------CCCcchHHHHHhh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I-------------------KGGWGWRISLAMA 143 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~-------------------~~~~~w~~~~~~~ 143 (172)
...+..+.+++|++|+++|++.+++.+....+|..+++.++. +.. . ...++||+.+.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 999999999999999999999999999999999999888875 321 1 1124799999988
Q ss_pred hHHHHHHHHhhhhhc
Q 041620 144 AAPASILTIGASDWW 158 (172)
Q Consensus 144 ~~~~~~~~~~~~~~~ 158 (172)
+++.++..+...+.+
T Consensus 211 ~ip~~i~~~~~~~lp 225 (502)
T TIGR00887 211 AVPALLALYFRLTIP 225 (502)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888776665554444
No 30
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.85 E-value=6.2e-21 Score=144.32 Aligned_cols=148 Identities=19% Similarity=0.158 Sum_probs=130.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+..+++|.|+++.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.......++.+.+.+.|++.|++.+.
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~ 107 (392)
T PRK10473 28 RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGC 107 (392)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhH
Confidence 45677899999999999999999999999999999999999999999999999988888889999999999999999998
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..+....++.|.+|+++|++..++.+....++..++|.+++ ...+..+|++.+++.+...++..+...
T Consensus 108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~--~l~~~~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 108 CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH--LIMLKFPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999987 333456899999888776665554433
No 31
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.85 E-value=4.3e-21 Score=148.39 Aligned_cols=151 Identities=11% Similarity=-0.086 Sum_probs=125.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cchhHHHHHHHHHHh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AFNIYMLIFGRLLLG 80 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g 80 (172)
.+++++|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++..+.... +++++.+++.|++.|
T Consensus 54 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 133 (467)
T PRK09556 54 DMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSG 133 (467)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999998888777766655443 589999999999999
Q ss_pred hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
++.+...+....++.|++|+++|++++++++.+.++|..+++.+.. ........+|+..|.+.++..++..+..++
T Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 134 FFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred HHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988875 222111125888888777766655444433
No 32
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.84 E-value=2.6e-20 Score=139.41 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=115.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~ 85 (172)
+++++|.|+++.+++.+...++..+++++.|+++||+|||+.++.+.++..++.+.+.+++ +++.+.+.|++.|++.+.
T Consensus 28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 107 (366)
T TIGR00886 28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS 107 (366)
T ss_pred HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh
Confidence 5688999999999999999999999999999999999999999999999999999888888 999999999999998664
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C------CCCcchHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I------KGGWGWRISLAM 142 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~------~~~~~w~~~~~~ 142 (172)
......++.|++|+|+|+++++++....++|..+++.++. +.. . .++.+||+.+++
T Consensus 108 -~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 108 -FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred -hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 5667889999999999999999998777777777776665 221 1 123479998843
No 33
>PRK10504 putative transporter; Provisional
Probab=99.84 E-value=1.8e-20 Score=144.93 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=130.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
+.+++|.|+.+.+++.+.+.++..++.++.|+++||+|||++++.+..+..++.+.+.+.++.+.+++.|++.|++.+..
T Consensus 36 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 115 (471)
T PRK10504 36 MAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMM 115 (471)
T ss_pred HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHH
Confidence 45678999999999999999999999999999999999999999998888888888888899999999999999999999
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.+....++.|.+|+++|+++.++.+...++|..++|.+++ ...++.+||+.|.+......+..+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g--~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 183 (471)
T PRK10504 116 VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG--LLVEYASWHWIFLINIPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 3334568999998876665555444333
No 34
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.84 E-value=8.3e-20 Score=140.00 Aligned_cols=138 Identities=23% Similarity=0.340 Sum_probs=111.1
Q ss_pred CChhHHHH---HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------HHHHHHHHHhh
Q 041620 13 FDSQLLTT---FISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------MLIFGRLLLGV 81 (172)
Q Consensus 13 ~s~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~ 81 (172)
.+..+.+. ..+...++..+++++.|+++||+|||+++..+.+++.++.+.+++++++. .+++.|+++|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~ 136 (432)
T PRK10406 57 NTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGL 136 (432)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh
Confidence 44444333 33444566669999999999999999999999999999999988887753 58899999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-----CCCcchHHHHHhhhHHHHHH
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-----KGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~w~~~~~~~~~~~~~~ 150 (172)
+.|...+...++++|++|+++|++..++.+.+...|..+++.+.. +... .+.+|||+.|++.+++.++.
T Consensus 137 g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 137 SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888888877776654 2221 12569999999877766554
No 35
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.84 E-value=2.2e-20 Score=141.96 Aligned_cols=148 Identities=17% Similarity=0.166 Sum_probs=129.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
...+++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.....++......+++++.+++.|++.|++.+.
T Consensus 38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 117 (406)
T PRK15402 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCF 117 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhh
Confidence 34578999999999999999999999999999999999999999999999999988888889999999999999999988
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..+.....+.|.+|+++|.+..++.+....++..++|.+++ ...++.+||+.+++.++..++..+...
T Consensus 118 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 118 IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGA--ALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999988888888999999987 333456899999887777666554433
No 36
>PRK12382 putative transporter; Provisional
Probab=99.84 E-value=6.5e-20 Score=138.74 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=117.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hc-----cchhHHHHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VC-----AFNIYMLIFGRLL 78 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~l 78 (172)
.++++|.|+++.+++.+.+.++..+++++.|+++||+||||+++.+.+...++.... .. .++++.+++.|++
T Consensus 42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (392)
T PRK12382 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI 121 (392)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999887766554322 11 2578889999999
Q ss_pred HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHH
Q 041620 79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPA 147 (172)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 147 (172)
.|++.+...+....++.|..|+|+|++++++++.+...|..++|.+++ ...+..+|+..+.+..+..
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~--~l~~~~g~~~~~~~~~~~~ 188 (392)
T PRK12382 122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL--LLHSHFGFAALALTTMVLP 188 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH--HHHhccChHHHHHHHHHHH
Confidence 999999888888889999999999999999999999999999999987 3334568998776654443
No 37
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.83 E-value=1e-19 Score=139.86 Aligned_cols=146 Identities=33% Similarity=0.574 Sum_probs=123.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhhhhhcc
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++..+.... .+++.+++.|++.|++.+...+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~ 146 (481)
T TIGR00879 67 SYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASA 146 (481)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHh
Confidence 3668999999999999999999999999999999999999999998888877543 4556899999999999999999
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH-hhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN-CTQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
....++.|++|+++|++++++++....+|..+++.++ ......+..+||+.|++.++..++..+...+.
T Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l 216 (481)
T TIGR00879 147 LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL 216 (481)
T ss_pred HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998 11144455699999998666655554443333
No 38
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.83 E-value=3.9e-20 Score=140.22 Aligned_cols=141 Identities=20% Similarity=0.171 Sum_probs=120.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--------chhHHHHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--------FNIYMLIFGRLL 78 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l 78 (172)
.++++|.|+++.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++...+.++ .+++.+++.|++
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLL 121 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999998887765544332 256788999999
Q ss_pred HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHH
Q 041620 79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASI 149 (172)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 149 (172)
.|++.+...+....++.|..|+|+|++++++++.....|..++|.+++ ...+..+|+..+++..+..++
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~--~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 122 LGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV--LLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH--HHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 333456899988776655443
No 39
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.83 E-value=2.9e-20 Score=140.73 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=128.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++.+++|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+.....++++.+++.|++.|++.+.
T Consensus 33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 112 (394)
T PRK11652 33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGV 112 (394)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhH
Confidence 45678999999999999999999999999999999999999999999999999888888889999999999999999988
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
..+....+..|.+++++|+++++..+.+..++..++|.+++ ...+..+||+.|++.++..++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 113 GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG--LLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccChHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999999999999999999988 333456899999987766554443
No 40
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.83 E-value=3.9e-20 Score=143.79 Aligned_cols=140 Identities=21% Similarity=0.304 Sum_probs=127.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
+.+++|.|+.+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+...+.++++.+.+.|++.|++.+..
T Consensus 46 i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~ 125 (496)
T PRK03893 46 VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGE 125 (496)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHH
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPAS 148 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 148 (172)
.+....++.|.+|+|+|++.+++.+....+|..++|.+.+ ...+..+||+.|.+..+..+
T Consensus 126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 126 YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS--LVVPVWGWRALFFIGILPII 185 (496)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 44456799999987544433
No 41
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.83 E-value=5.4e-20 Score=140.17 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=128.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGV 81 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~ 81 (172)
++.++++|.|+.+.+++.+...++..+++++.|++.||+|||+++..+.++.+++.+.... .++++.+.+.|++.|+
T Consensus 27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~ 106 (410)
T TIGR00885 27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTA 106 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999999999999999999998877543 3689999999999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCC-----------------------CCcchH
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIK-----------------------GGWGWR 137 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-----------------------~~~~w~ 137 (172)
+.+...+..+.++.+..|+++|++.+++.+...++|..++|.+.. +.... +..+||
T Consensus 107 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 186 (410)
T TIGR00885 107 GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQ 186 (410)
T ss_pred hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 42111 123699
Q ss_pred HHHHhhhHHHHHHHHhh
Q 041620 138 ISLAMAAAPASILTIGA 154 (172)
Q Consensus 138 ~~~~~~~~~~~~~~~~~ 154 (172)
++|++.+...++..+..
T Consensus 187 ~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 187 TPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988877666554433
No 42
>PRK11043 putative transporter; Provisional
Probab=99.83 E-value=3.8e-20 Score=140.43 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=129.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++++++|.++++.++..+...++..+++++.|+++||+|||+++..+.++..++.+...+.++++.+++.|++.|++.+.
T Consensus 31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 110 (401)
T PRK11043 31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS 110 (401)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHH
Confidence 35678899999999999999999999999999999999999999999999998888888889999999999999999888
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
..+....++.|.+|+++|++..+..+....++..++|.+++ ...+..+||+.|++.++..++..+...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 111 AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGA--WLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999988888888888899999999988 3345568999998887776665554433
No 43
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.83 E-value=1.2e-19 Score=141.26 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHH--------HHHHHHHHhhhhhhhccchhhh
Q 041620 22 ISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYM--------LIFGRLLLGVGIGFGNQSVPLY 93 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~ 93 (172)
.+...++..+++++.|+++||+|||+++..+.++++++.+++++++|++. ++++|+++|++.|...+....+
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 36667899999999999999999999999999999999999999998864 7889999999999999999999
Q ss_pred hhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh-cC----CCCcchHHHHHhhhHHHHHH
Q 041620 94 LSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KI----KGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 94 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~----~~~~~w~~~~~~~~~~~~~~ 150 (172)
++|++|+|+|++..++.+.+..+|..+++.+.. +. .. ..++|||+.|++.+++.++.
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~ 205 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG 205 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999999999998888888887776654 21 11 13579999999876655443
No 44
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.82 E-value=6e-20 Score=141.01 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=134.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~ 85 (172)
+.+++.|+++.+++.+.+..|+++++++.|+++||+|-|+++..+.++.++..++...+ .+++.+++.|+++|++.+.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 56899999999999999999999999999999999999999999999999999988876 4566889999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.++......++|.|+++|++..++...+..+|.+++-.+++ .+.+. .||+..|++.++.+++..++.++..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg--~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSG--LLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988887 33344 7999999999999888776655544
No 45
>TIGR00895 2A0115 benzoate transport.
Probab=99.82 E-value=4.6e-20 Score=138.95 Aligned_cols=145 Identities=22% Similarity=0.243 Sum_probs=128.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
...+++|.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.....+.++++.+++.+++.|++.+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (398)
T TIGR00895 42 AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121 (398)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhccccc
Confidence 34577899999999999999999999999999999999999999999999988888888889999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
..+...+++.|.+|+++|++.+++.+....+|..+++.+.+ ...+..+|+..+++.++...+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG--WLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH--HHhhcccceeehhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999987 444556899998887554444433
No 46
>PRK10054 putative transporter; Provisional
Probab=99.82 E-value=7.7e-20 Score=138.74 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=126.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
.++++|.|+++.++..+...++..+++++.|+++||+|||+++..+.++..++.....+.++++.+++.+.+.|.+.+..
T Consensus 34 l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 113 (395)
T PRK10054 34 LSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF 113 (395)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999988888888888899998888898888887777
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
.+....+..|..|+++|++.+++.+...++|..++|.+++ +. + .+|+..|.+.++..++..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~---~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV---M-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hccCcHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999988 43 2 479999998777666554433
No 47
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.82 E-value=1.2e-19 Score=137.86 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=128.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
.+++.|.|+.+.|+..+...+...+.+++.|+++||+|||+++..+.++..++.+.+...++++.+++.|++.|++.+..
T Consensus 37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 116 (400)
T PRK11646 37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLF 116 (400)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999998888899999999999999999888
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
.+...+++.|.+|+|+|++++++.+...++|..++|.+++ +. .++|++.|++.+...++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999998 43 358999999877666554433
No 48
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.82 E-value=1.4e-19 Score=140.27 Aligned_cols=151 Identities=15% Similarity=0.020 Sum_probs=123.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.+++++|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++..+..++++++.+++.|++.|++.+.
T Consensus 61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~ 140 (476)
T PLN00028 61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLAT 140 (476)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999998888888889999999999999998876
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc------CCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK------IKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~------~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
.. ....+++|++|+++|++++++.+...++|..+++.+.. +.. ..+..+||+.|++.+++.++..+...+.
T Consensus 141 ~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 141 FV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred hH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 43 45667899999999999999988777777777665554 211 1123589999999888777665554443
No 49
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=140.03 Aligned_cols=141 Identities=35% Similarity=0.525 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLS 95 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 95 (172)
++.+++.+...++..+++++.|+++|++|||+.++.+.+...++.++.+++.|.+++.++|++.|+|.|......+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 96 EMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 96 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
|..|++.||...+..+....+|..++..++. .... . ++||..+.+..+++++..+..++.+
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~p 230 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLP 230 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999866655 3222 1 5899999999999888877755544
No 50
>PRK10133 L-fucose transporter; Provisional
Probab=99.81 E-value=3.3e-19 Score=136.96 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=111.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hccchhHHHHHHHHHHhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCAFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~ 82 (172)
+.++++|.|+++.++..+.+.++..+++++.|++.||+|||+++..+..+..++.+++ ..+++++.+.++|++.|++
T Consensus 51 ~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g 130 (438)
T PRK10133 51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG 130 (438)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999998775 4578999999999999999
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+...+..+.++.|..|+++|...+++.+..+.+|..++|.++.
T Consensus 131 ~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877777777899999999999999998876
No 51
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.81 E-value=3.8e-19 Score=138.13 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=119.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAFNIYM-LIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~ 85 (172)
++++|.++++..++.+.+.....+..++.|+++|| +||||+++.+.+++.++.+.+.++.+... +.+.|.++|+|.|.
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~ 121 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGL 121 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence 45689999999999999888888888999999999 99999999999999999998888765443 55789999999999
Q ss_pred hccchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHH
Q 041620 86 GNQSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAP 146 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 146 (172)
..+...+++.|.+|+++ |..+.++++.+.++|..++|.+++ ...++.|||+.|++..+.
T Consensus 122 ~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g--~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 122 FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP--VIADKFGYSVTYNLCGAG 182 (489)
T ss_pred ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH--HHHHhhChHHHHHHHHHH
Confidence 99999999999998774 577899999999999999999988 444566899999886553
No 52
>PRK09952 shikimate transporter; Provisional
Probab=99.81 E-value=6e-19 Score=135.53 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------HHHHHHHHHhhhhhhhccchhhhhh
Q 041620 24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------MLIFGRLLLGVGIGFGNQSVPLYLS 95 (172)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~ 95 (172)
...++..+++++.|+++||+|||+++..+.+++++++++++++++++ .++++|+++|++.+...+....++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 34466778999999999999999999999999999999999998876 5888999999999999999999999
Q ss_pred ccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-C----CCcchHHHHHhhhHHHHH
Q 041620 96 EMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-K----GGWGWRISLAMAAAPASI 149 (172)
Q Consensus 96 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-~----~~~~w~~~~~~~~~~~~~ 149 (172)
|++|+|+|++..+..+.+..+|..+++.+.. +... . .+++||..|++.+++.++
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 9999999999999999888898888876654 2211 1 257999999987766544
No 53
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.81 E-value=5.8e-19 Score=132.43 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=119.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH-HHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILI-GGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.++++|.|+++.+++.+...+...+.+++.|+++||+||||.++. +.....++...+..+++++.+++.|++.|.+.+.
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 103 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAST 103 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhh
Confidence 467899999999999999999999999999999999999887654 4555566667777889999999999999888777
Q ss_pred hccchhhhhhccCCccccccc--hhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTF--NIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
..+....+..|..|++.|++. .+......++|..++|.+++ ...+..+||+.|++.+...++..+...+
T Consensus 104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~--~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF--WLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH--HHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 788888888898887777654 57777788899999999988 3334568999999987776655544443
No 54
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.81 E-value=9.6e-19 Score=135.58 Aligned_cols=139 Identities=16% Similarity=0.207 Sum_probs=124.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS 89 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 89 (172)
+|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+...++++.+.+.+.+.+.|++.+...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 89999999999999999999999999999999 89999999999999999988888888888889999999999999999
Q ss_pred hhhhhhccCCccc---cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 90 VPLYLSEMTTPKY---RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 90 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
..++++|++|+++ |+++.++++...++|..++|.+++ ...++.+|++.|.+.++..++..
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g--~l~~~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG--VIAENYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH--HHHHhcChHHHHHHHHHHHHHHH
Confidence 9999999998764 888999999999999999999988 44455689999988776544443
No 55
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.80 E-value=5.4e-19 Score=130.79 Aligned_cols=144 Identities=26% Similarity=0.358 Sum_probs=129.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
.++.|.++++.++..+...++..+++++.|+++||+|||+.+..+..+..++.......++++.+.+.|++.|++.+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 105 (352)
T cd06174 26 AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALY 105 (352)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccccccc
Confidence 45678999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
+....++.|.+|+|+|++.+++.+....+|..++|.+++ ...+..+|++.+++.++..++..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG--LLAESLGWRWLFLILAILGLLLALL 169 (352)
T ss_pred HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 3334457999998877766655443
No 56
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.80 E-value=5.9e-19 Score=138.22 Aligned_cols=140 Identities=21% Similarity=0.179 Sum_probs=123.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+..+.+.....+..+++.+|..+|++++|+++||+|||++++.++++..++....++++|++.+.+.|++.|++.+....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 55667788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
....++.|+.++++|+.+.++ ......++.+++..++ .... +||+.+++..++..+.++.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a--~~~~--~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA--YITR--DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH--HHHh--hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 5556666666666655 2222 8999999998888877665
No 57
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.80 E-value=4.1e-19 Score=136.88 Aligned_cols=145 Identities=18% Similarity=0.077 Sum_probs=119.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVG 82 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~ 82 (172)
.+++ |.|+++.++..+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+. .+++.+++.|++.|++
T Consensus 55 l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~ 133 (452)
T PRK11273 55 LVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF 133 (452)
T ss_pred HHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 3455 9999999999999999999999999999999999999999999988888777664 3677888999999999
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHH-HHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLL-SANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
.+...+.....+.|++|+|+|++++++++.+..+|.. .+|.+.. ... ..+||+.|++.++..++..++..
T Consensus 134 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~~f~i~~~~~~~~~~l~~ 205 (452)
T PRK11273 134 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHAALYMPAFAAILVALFAF 205 (452)
T ss_pred HhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888899999999999999999999988864 4555433 211 23899999987776665544433
No 58
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.80 E-value=8.8e-19 Score=132.25 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=112.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
...+++|.|+++.|++.+.+.++..+++++.|+++||+|||+.+..+.++..++......++|++.+.+.|++.|++.+.
T Consensus 31 ~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~ 110 (381)
T PRK03633 31 LWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAM 110 (381)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999998888899999999999999999998
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
..+.....+.+..++++|+++++.++...++|..++|.+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 111 IWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887778888999999999999999999999999999987
No 59
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.80 E-value=8.1e-19 Score=134.75 Aligned_cols=145 Identities=20% Similarity=0.076 Sum_probs=122.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhhhhhh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~ 86 (172)
.|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+..... ++++.+.+.|++.|++.+..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence 59999999999999999999999999999999999999999988888887766553 46777888999999999988
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
++.....+.|++|+++|++++++++....+|..+++.+.+ .. .+..+||..|++.++..++..+...+.
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM--AWFNDWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999999999998887765 21 123489999999887776655444433
No 60
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.80 E-value=6.1e-19 Score=133.92 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=129.2
Q ss_pred CCCCCCCCChhH-HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 6 KVSNYSKFDSQL-LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 6 ~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
.+.+++|+|+++ .|.+.+.+..++.+..++.|+++||+|.|+++..+.+.+.+...+.++++++..+.+.|++.|++.+
T Consensus 51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA 130 (511)
T TIGR00806 51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMA 130 (511)
T ss_pred HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHH---hhhHHHHHHHHhhhhhc
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLA---MAAAPASILTIGASDWW 158 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~ 158 (172)
... +...++.+++|+++|+++.++.+.+..+|.+++++++. . ...+|||.... +......+..+..++++
T Consensus 131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q--l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ--L-LVTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999 99999999999999999999999999999999999987 2 22457776554 33333334444445555
No 61
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.1e-19 Score=132.23 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=139.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+..++.+-+++++|++.....+.+.+.+++.|.+.||+|+|..++++.+.+..+.+++++.+++++++++|.++|+|.+.
T Consensus 96 ~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 96 AEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAF 175 (464)
T ss_pred hhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHH
Confidence 33466778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhccCCccc-cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhccc
Q 041620 86 GNQSVPLYLSEMTTPKY-RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYR 160 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 160 (172)
..+...++++|.+|+++ |++++|+...+.++|..++|..++ .+.+..|.+.+|.+.++++++-..+.++...+
T Consensus 176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGG--ilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGG--ILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCccc--chHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 99999999999999766 799999999999999999999999 44456689999999999988877776666543
No 62
>PRK15075 citrate-proton symporter; Provisional
Probab=99.79 E-value=8.9e-19 Score=134.39 Aligned_cols=140 Identities=19% Similarity=0.385 Sum_probs=111.8
Q ss_pred CCCCCCCCChhHHHHHH-HHH-----HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------H
Q 041620 6 KVSNYSKFDSQLLTTFI-SSL-----YITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------M 71 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (172)
.++++++.++.+.+... +.. .++..+++++.|+++||+|||+.++.+.++..++.+.+.++++++ .
T Consensus 40 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 119 (434)
T PRK15075 40 AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLL 119 (434)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 34567787776654432 222 222347889999999999999999999999999999999998876 4
Q ss_pred HHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc-C----CCCcchHHHHHhhhH
Q 041620 72 LIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK-I----KGGWGWRISLAMAAA 145 (172)
Q Consensus 72 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~----~~~~~w~~~~~~~~~ 145 (172)
+++.|++.|++.+...+....+++|++|+|+|++.+++.+...++|..+++.++. +.. . .+.++||+.|++..+
T Consensus 120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 6889999999999988888999999999999999999998888888888777776 321 1 245799999987543
No 63
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.79 E-value=2.7e-19 Score=138.02 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=124.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHH-HHHHHhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIF-GRLLLGVGIG 84 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~ 84 (172)
++++++|.+.++.++..+.+.++..++.++.|+++||+|||++++.+.++..++.+.+.++++++.+++ .|++.|++.+
T Consensus 44 ~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~ 123 (455)
T TIGR00892 44 ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLA 123 (455)
T ss_pred HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcch
Confidence 345789999999999999999999999999999999999999999999999999888888889888765 4689999998
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
...+....++.++++ ++|+++.++.+.+..+|..++|.+++ .+.+.++||+.|++.++..++..+.
T Consensus 124 ~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~--~l~~~~gwr~~f~~~~~~~~~~~v~ 189 (455)
T TIGR00892 124 FNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQ--YLFESFGWRGSFLILGGLLLHCCVC 189 (455)
T ss_pred hhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHH
Confidence 766677788889885 78999999999999999999999887 3334568999999988776655443
No 64
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.1e-18 Score=131.89 Aligned_cols=141 Identities=24% Similarity=0.387 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhhhhhccchhhhh
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGIGFGNQSVPLYL 94 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 94 (172)
.+.+.+++.+|+++|+++.++++||+|||..+..+.++..++..+..++ +++++++++|++.|+..+......+.++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4557788889999999999999999999999999998888877766654 7899999999999999999999999999
Q ss_pred hccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 95 SEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 95 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.|..|++.||....+.+.+..+|..++..++.-..+.+...|++.+....+++++..+...+.+
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P 205 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP 205 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998777522344556799999999999988888777777
No 65
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.79 E-value=1e-18 Score=132.54 Aligned_cols=134 Identities=12% Similarity=0.035 Sum_probs=115.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
.++++.++.+.+++.+.+.++..+..++.|+++||+|||++++.+.++..++.+.+.+..+. ++.|+++|++.+...
T Consensus 30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~ 106 (393)
T PRK11195 30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYS 106 (393)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999998887776665553 678999999999999
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHH
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPAS 148 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~ 148 (172)
+...+++.|++|+|+|++++++.+....+|..++|.+++ +.. . .|+..+.+.+...+
T Consensus 107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~---~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD---P-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 432 1 36666666554433
No 66
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.79 E-value=2.3e-18 Score=130.91 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=110.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---c-cchhHHHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---C-AFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~g~~~~ 84 (172)
+++|.|+++.++..+.+.++..+++++.|++.||+|||+++..+..+..++.+.+. . .++++.+.+.|++.|++.+
T Consensus 41 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~ 120 (402)
T TIGR00897 41 KALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYP 120 (402)
T ss_pred HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchH
Confidence 56899999999999999999999999999999999999999999988888765442 3 2578888899999999988
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHH-HHHHHHHhhhcCCCCcchHHHHHh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGL-LSANLLNCTQKIKGGWGWRISLAM 142 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~w~~~~~~ 142 (172)
...+.....+.|.+|+|+|++++|+++...++|. .++|.+++ ...+..||+..++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~--~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 121 LFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS--YAIPAFGEMNTLWS 177 (402)
T ss_pred HHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccchHHHHHH
Confidence 8777778888999999999999999999999996 57888876 33344565544443
No 67
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.79 E-value=2e-18 Score=129.10 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=118.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
..++++|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+.. ..++.+.+++.|++.|++.+.
T Consensus 25 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~ 103 (355)
T TIGR00896 25 QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAI 103 (355)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999988888777766 678888999999999999998
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPAS 148 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~ 148 (172)
..+..+..+.|.+| ++|++++++++...++|..+++.+.+ +.... ..+||..|...+...+
T Consensus 104 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 104 INVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS-GGHWQQALAWWALPAL 165 (355)
T ss_pred HhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence 88888888888886 68999999999999999999998877 32111 1249998877655443
No 68
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.78 E-value=2.1e-21 Score=149.24 Aligned_cols=145 Identities=34% Similarity=0.558 Sum_probs=128.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc---hhHHHHHHHHHHhhhhhhhccch
Q 041620 14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF---NIYMLIFGRLLLGVGIGFGNQSV 90 (172)
Q Consensus 14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~ 90 (172)
++.+.++..+...+|..+|+++.|+++||+|||+.++.+.++..++.++..+++ |++.+.++|++.|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456788999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
..++.|..|+++|++..++.+.+..+|..++..+.. .....+..+||..+....++.++..+...+.+
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~p 192 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLP 192 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999888887765 32333345699999998888876665555555
No 69
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.78 E-value=2.1e-18 Score=130.94 Aligned_cols=145 Identities=16% Similarity=0.083 Sum_probs=120.9
Q ss_pred CCCCCChhH-----HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhh
Q 041620 9 NYSKFDSQL-----LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 9 ~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 83 (172)
+++|.+..+ .+++.+...++..+++++.|+++||+|||+++..+.+...++.......++++.+++.|++.|++.
T Consensus 42 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 121 (408)
T PRK09874 42 EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLG 121 (408)
T ss_pred HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 456666543 488888999999999999999999999999999999998888888888899999999999999986
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
+ ..+....++.|..|+++|++++++.+....+|..++|.+++ ...+..+||..|++.++..++..+...+
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 122 G-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG--LLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred h-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 45667788899999999999999999999999999999988 3334568999998887766655444333
No 70
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.77 E-value=6.1e-18 Score=129.52 Aligned_cols=148 Identities=14% Similarity=-0.029 Sum_probs=120.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----FNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~ 83 (172)
+++|+|++|.+++.+...+++.++.++.|++.||+|+|+++..+.++..+..+...++ ++++.+++.|++.|++
T Consensus 63 ~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig- 141 (462)
T PRK15034 63 IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA- 141 (462)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-
Confidence 3799999999999999999999999999999999999999999999999888888765 7999999999999998
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh------c---------CCCCcchHHHHHhhhHHH
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ------K---------IKGGWGWRISLAMAAAPA 147 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~------~---------~~~~~~w~~~~~~~~~~~ 147 (172)
+..++.....+++++|+|+||++++++....++|..+++++.. +. . ..+..+||...++..+..
T Consensus 142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (462)
T PRK15034 142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL 221 (462)
T ss_pred HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence 6688899999999999999999999996666666655544432 11 0 012345888888777776
Q ss_pred HHHHHhhhhh
Q 041620 148 SILTIGASDW 157 (172)
Q Consensus 148 ~~~~~~~~~~ 157 (172)
++..+..++.
T Consensus 222 iv~~i~~~~~ 231 (462)
T PRK15034 222 AIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHh
Confidence 6655554443
No 71
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.77 E-value=2.6e-18 Score=125.95 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=108.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS 89 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 89 (172)
..+.+....|.+.+.+.+.+.+.++.+|.++||+|||++++.+++..++...+.+.++|+..+.++|++.|+..|- .+.
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v 140 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSV 140 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHH
Confidence 3445777889999999999999999999999999999999999999999999999999996666679999999874 667
Q ss_pred hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc
Q 041620 90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK 129 (172)
Q Consensus 90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~ 129 (172)
..++++|..++|+|+.+++..+..+++|.++||++++ +..
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 8899999999999999999999999999999999999 543
No 72
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.77 E-value=5.2e-19 Score=140.98 Aligned_cols=154 Identities=19% Similarity=0.142 Sum_probs=129.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc-----------------
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF----------------- 67 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----------------- 67 (172)
+.++++++++.++.|++.+.+.+++.++.++.+++.||+|||+.+.++.++++++++++++.+
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence 457889999999999999999999999999999999999999999999999999988776542
Q ss_pred ----------------------------------hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHH
Q 041620 68 ----------------------------------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLC 113 (172)
Q Consensus 68 ----------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 113 (172)
.+..++++|+++|+|.+..++...+++.|++|+++|++..++++..
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~ 216 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI 216 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence 2456778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hhcCC-CC-----------------c-chHHHHHhhhHHHHHHHHhhhhhc
Q 041620 114 AAIGLLSANLLNC-TQKIK-GG-----------------W-GWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 114 ~~~g~~~~~~~~~-~~~~~-~~-----------------~-~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
..+|..+++++++ +.... +. . +|+..|++.+++.++..+..++++
T Consensus 217 ~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 217 AVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999988 43221 10 1 377788887777766655444443
No 73
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.76 E-value=2.8e-18 Score=111.36 Aligned_cols=132 Identities=23% Similarity=0.278 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccc
Q 041620 23 SSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKY 102 (172)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 102 (172)
+...++..+++++.|++.||+|||+.+..+.....++.+.....++.+...+.+++.|++.+...+....++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 34567888999999999999999999999998888888887778899999999999999999999999999999999999
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 103 RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 103 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
|++.+++.+....+|..++|.+.+ ...+..+|++.+.+.....++..+...+
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGG--VLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHH--HHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988 3335568999988877766655544433
No 74
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.76 E-value=2.3e-17 Score=124.08 Aligned_cols=139 Identities=24% Similarity=0.345 Sum_probs=111.4
Q ss_pred CChhHHHHHHHHH-----HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH--------HHHHHHHHH
Q 041620 13 FDSQLLTTFISSL-----YITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY--------MLIFGRLLL 79 (172)
Q Consensus 13 ~s~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ 79 (172)
.++++.+...+.. .++..+++++.|+++||+|||+++..+.++..++.+.+.++++++ .+++.|++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 4455555544432 234457899999999999999999999999999999888887764 478899999
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-----CCCcchHHHHHhhhHHHHHHH
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-----KGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~w~~~~~~~~~~~~~~~ 151 (172)
|++.+...+....++.|++|+|+|++..+..+.+..+|..+++.+.. +... .+.++||+.+.+.++..++..
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988875 3221 134689999988766555443
No 75
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.75 E-value=3.2e-18 Score=130.63 Aligned_cols=146 Identities=11% Similarity=-0.037 Sum_probs=120.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-----ccchhHHHHHHHHHHhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-----CAFNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~ 83 (172)
++.+.++.+.+++.+...++..+++++.|+++||+|||+++..+..+.+++..... ..++++.+.+.|++.|++.
T Consensus 45 ~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 124 (417)
T PRK10489 45 QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFG 124 (417)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999998888777666554432 2467888889999999999
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
+...+.....+.|..|+++|+++.++.+....+|..++|.+++ ...+..+|++.+++.++..++..+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T PRK10489 125 SLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG--LLIAAGGVAWNYGLAAAGTFITLLPLLR 195 (417)
T ss_pred HHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999999999999999999999999999988 2223457899988877666555444333
No 76
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1e-17 Score=129.31 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=136.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
.+++.+....+.+.+.+++.++++++.++++.+.||++..+.+....+.+.+..++....+|++.+++.|+++|+.++..
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 45788899999999999999999999999999999999888888888888777766666899999999999999999999
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC---CCCcchHHHHHhhhHHHHHHHHhhhhhccc
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI---KGGWGWRISLAMAAAPASILTIGASDWWYR 160 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 160 (172)
+|....++..++.+++|++.+++++...++|.+++++++. +..+ ....||||.|++.+++.++..+..++..|.
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 9999999999999999999999999999999999999988 4322 234689999999999988887777665543
No 77
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.74 E-value=6.9e-17 Score=124.86 Aligned_cols=142 Identities=14% Similarity=0.216 Sum_probs=113.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~ 85 (172)
++++|+++.+.+.+.+.+.....++.++.|+++||+ ||||++.++.++..++.+.+...+ +...+.+...+..++.|.
T Consensus 37 ~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 37 TNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccc
Confidence 345799999999999999999999999999999999 999999999999988877665432 223344444455566677
Q ss_pred hccchhhhhhccCCcc--ccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPK--YRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
..+...+++.|.+|++ +|.++.++++...++|+.++|.+.+ ...++.||++.|.+.++..++..
T Consensus 117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g--~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG--YAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH--HHHhhhChHHHHHHHHHHHHHHH
Confidence 6777888999999876 6999999999999999999999988 44456689999988766444433
No 78
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.74 E-value=5.6e-17 Score=126.48 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=115.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~ 85 (172)
++++|.++++.++..+.+........++.|+++|| +|||+++..+.++..++...+.+++ +.+.+.+.+.+.|++.|.
T Consensus 49 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~ 128 (500)
T PRK09584 49 VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL 128 (500)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence 46789999998888877665656666789999999 5999999999999999888887764 556677889999999998
Q ss_pred hccchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
..+...+++.|++|+++ |..+.++++.+.++|..++|.+++ ...++.|||+.|.+.++...+..
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g--~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP--WLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH--HHHHhhCHHHHHHHHHHHHHHHH
Confidence 88888899999998654 456788889999999999999998 44456689999998765444433
No 79
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.2e-17 Score=121.07 Aligned_cols=150 Identities=15% Similarity=0.058 Sum_probs=123.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhh
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGV 81 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~ 81 (172)
+.+++++++|++|.+++.++..+...+..++.|.+.||+|.|+....+.++..+-++...++ ++++.+++++.+.|+
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~ 117 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL 117 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999999999999999988888876 445699999999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc---hHHHHHhhhHHHHHHHHhhhhhc
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG---WRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
+.+ .+.....++++++|||++|.++|++. ..|+|..+..+++. ......+ |+....+..+..++..+...+..
T Consensus 118 ~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P--~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 118 AGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP--LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred ccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 865 58888999999999999999999998 77777766666655 1111235 88888887777666555544444
No 80
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.70 E-value=3.1e-16 Score=119.89 Aligned_cols=149 Identities=16% Similarity=0.186 Sum_probs=119.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-c---hhHHHHHHHHHHhhhhhhhcc
Q 041620 13 FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-F---NIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~g~~~~~~~~ 88 (172)
.+.++.+...+...++.+++.++.|+++||+|||+++..+.++..+........ + +.+.+.+.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888899999999999999999999999999999888876555543 2 245667789999999988888
Q ss_pred chhhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHh-hhcCCCC---cchHHHHHhhhHHHHHHHHhhhhhccch
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNC-TQKIKGG---WGWRISLAMAAAPASILTIGASDWWYRY 161 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~-~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (172)
....++.|.+|+++|++.+++.+ ....+|..++|.+++ +....+. +||+..|.+.++..++..++..++.++.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 88999999999999999999997 678899999999998 4333222 4799999888777776666555555433
No 81
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.70 E-value=3.5e-16 Score=116.97 Aligned_cols=147 Identities=12% Similarity=-0.014 Sum_probs=112.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHHH-HHHHHHHHHhhhhhhcc---chhHHHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKVSI-LIGGVAFLAGSALGVCA---FNIYMLIFGRL 77 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 77 (172)
..+++|+|.++.++..+. .+...+ .++.|+++||+ ||||.+ +.+.+..++......+. .+.+.+....+
T Consensus 14 ~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 91 (356)
T TIGR00901 14 WLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAF 91 (356)
T ss_pred HHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 356789999999998655 444444 99999999998 898874 56666666665555555 45666777777
Q ss_pred HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCC-----CcchHHHHHhhhHHHHHHH
Q 041620 78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG-----GWGWRISLAMAAAPASILT 151 (172)
Q Consensus 78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-----~~~w~~~~~~~~~~~~~~~ 151 (172)
+.+++.+...+...+++.|++|+|+|+++.++...+..+|..+++.+++ +..... .++||..|++.++..++..
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~ 171 (356)
T TIGR00901 92 LIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGL 171 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999999999999999987 322111 1239999998887766655
Q ss_pred Hhhh
Q 041620 152 IGAS 155 (172)
Q Consensus 152 ~~~~ 155 (172)
+...
T Consensus 172 ~~~~ 175 (356)
T TIGR00901 172 LVTL 175 (356)
T ss_pred HHHH
Confidence 4433
No 82
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.70 E-value=3.1e-16 Score=118.92 Aligned_cols=146 Identities=12% Similarity=0.118 Sum_probs=106.2
Q ss_pred CCCCCCCChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYI-TGILASLIASSVTRALGRKVSIL-IGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
.++++|.|+++.|+..+...+ +...+.+..++ +||+||||.++ .+.+...+......++++++.+.+.+.+.+...+
T Consensus 42 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (393)
T PRK15011 42 LTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGS 120 (393)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999776655 55555655566 99999998754 5556556666667778888887666665555555
Q ss_pred hhccchhhhhhccCCccccc--cchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 85 FGNQSVPLYLSEMTTPKYRG--TFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
...+....+..|+.+++.|. ...+..+.+.++|..++|.+++ ...++.|||..|+..++..++..+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~--~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY--ALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH--HHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 66777788888877666553 3346778888999999999998 444456999999988776665554433
No 83
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.69 E-value=2.4e-16 Score=123.45 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=116.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
.+.|-+ +...|+.+...++..++.++.|+++|.||||+.++.+.++..++...++.++|...++.+..+.|+|.|...
T Consensus 72 ~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~- 149 (599)
T PF06609_consen 72 ADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE- 149 (599)
T ss_pred HhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-
Confidence 444544 556778888999999999999999999999999999999999999999999999999999999999987755
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
.....++|..|.|.|.....+...........+|.++. ....+.+|||.|++..+...+.++..+
T Consensus 150 ~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~--~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 150 LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ--LFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH--HhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 45666899999999988777766655555556777765 333445899999998887666554443
No 84
>PTZ00207 hypothetical protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=124.18 Aligned_cols=144 Identities=13% Similarity=0.011 Sum_probs=116.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc------chhHHHHHHHHHH
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA------FNIYMLIFGRLLL 79 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~ 79 (172)
++++++|+|.++.+++.+.. ......+++.|+++||+|||++++++.+++.++.+++.++ ++++.+.+.|++.
T Consensus 52 ~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 52 AMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLM 130 (591)
T ss_pred HHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 45678999999999988763 3444677789999999999999999999999999988876 6899999999999
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH-hhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN-CTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
|++.+..++.....+.+++| ++||++.++...+.++|+.+.+.+. ... . .+|+..+++.++..++..++..
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~--~--~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF--S--DNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HhHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888999999996 7899999999999999997644443 321 1 2577777777776666544443
No 85
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.69 E-value=5.8e-16 Score=131.01 Aligned_cols=135 Identities=13% Similarity=0.030 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH---HHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGG---VAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPL 92 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 92 (172)
...++..+.+.+...+.+++.|+++||+|||+++.... +............+++++++++|+++|++.+...+...+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 45777888889999999999999999999999764322 222222222223489999999999999999999999999
Q ss_pred hhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 93 YLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 93 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
++.+++|+++|++++++.+.+.++|.+++|.+++ .+....+|++.|....+..++..+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g--~l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGG--LATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 333345899988554444444333
No 86
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.67 E-value=1.3e-15 Score=115.85 Aligned_cols=141 Identities=15% Similarity=0.110 Sum_probs=114.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhH-HHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKV-SILIGGVAFLAGSALGVCA---FNIYMLIFGRLLL 79 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 79 (172)
++.|+|.+++|++...... .+..+++|+++||+ |||| .+..+.++.+++.....+. ++++.+.+..++.
T Consensus 27 ~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 104 (402)
T PRK11902 27 TVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLV 104 (402)
T ss_pred HHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4579999999998766665 68999999999999 7765 6777777777766665655 4577777787888
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHh
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~ 153 (172)
+++.+...+...+++.|+.|+|+|+++.++...+..+|..+++.+.. ...+. .|||..|++.++..++..+.
T Consensus 105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~--~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLAL--WLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHH--HHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999988876 22232 48999999887766554443
No 87
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.67 E-value=1.1e-15 Score=113.11 Aligned_cols=143 Identities=25% Similarity=0.297 Sum_probs=128.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhH-HHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKV-SILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
.+|.++.+.+.......++..++.++.+++.||+|||+ .+..+..+..++.......++.+...+..++.|++.+...+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 205 VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccch
Confidence 34889999999999999999999999999999999999 99999999999988888888888899999999999999999
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
....++.|..|+|+|++.+++.+....+|..++|.+.+ ...+..+|+..+.+.++..++..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g--~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG--LLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988 44445689999998888777665543
No 88
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.66 E-value=2.2e-15 Score=114.31 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=114.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++++|.++.+.+++.+...++.+++.++.|+++||+|||+.+..+.....+........++.+...+.+++.+++.+...
T Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~ 323 (393)
T PRK15011 244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILG 323 (393)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45678999999988887778888899999999999999998887766665555444456777777788888888877777
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
+....+..|..|+ +|++++++++...++|..++|.+++ ...+..+|+..+.+.....++..+...
T Consensus 324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G--~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 324 GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAG--IVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777888899875 5999999998889999999999998 333556899999887766665554433
No 89
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.66 E-value=1.7e-15 Score=128.17 Aligned_cols=113 Identities=13% Similarity=0.030 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---ccchhHHHHHHHHHHhhhhhhhccch
Q 041620 14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CAFNIYMLIFGRLLLGVGIGFGNQSV 90 (172)
Q Consensus 14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~ 90 (172)
+....+++.+.+.++..+++++.|+++||+|||++++.+.++.++..++.. ..++++.+++.|++.|++.+...+..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 345578889999999999999999999999999999988876655554433 34789999999999999999999999
Q ss_pred hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+++.|++|+++|++++++.+.+..+|.++++.+++
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~ 160 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFS 160 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998
No 90
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.66 E-value=1.2e-15 Score=114.01 Aligned_cols=140 Identities=13% Similarity=0.008 Sum_probs=116.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHhhhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN--IYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~ 86 (172)
++.+.++++.+...+...++..+++++.|++.||+|||+.+..+.....++.......++ ...+....++.|++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 312 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT 312 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc
Confidence 456788888999999999999999999999999999999999988888887776665543 233445677788888887
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 150 (172)
.+..+.+..|.+|+++|++..++.+....+|..++|.+.+ ...++.||+..|.+.++..++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS--HALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH--HHHhhhchhhHHHHHHHHHHHh
Confidence 8888889999999999999999999999999999999988 4445668999998877665543
No 91
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.66 E-value=1.6e-15 Score=115.98 Aligned_cols=143 Identities=14% Similarity=0.121 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
+.+..+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..++..+.++.+.+.+.+++.|++.+.......
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999988999999999999999999999999998888888888888888889888899999998888777788
Q ss_pred hhhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 92 LYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.++.|.+|++.|++..+. ++....+|..++|.+.+ ...+..||+..|...++..++..+...+
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G--~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAG--NLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHH--HHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988766 67788899999999988 4445568999999877776655544443
No 92
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.66 E-value=4.2e-15 Score=112.94 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=115.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.......++.+.+.+..++.|++.+..++
T Consensus 248 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (406)
T PRK11551 248 VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQS 327 (406)
T ss_pred HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHH
Confidence 34688999999999999999999999999999999999998887766666666666667777777788888988877888
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCC-cchHHHHHhhhHHHHHHHHh
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGG-WGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~ 153 (172)
...++..|.+|+++|++..++.+....+|..++|.+.+ ...++ .+|...+.......++..+.
T Consensus 328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g--~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG--QLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh--hhhccCCchHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999988 33232 24555665554444444433
No 93
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.65 E-value=3e-15 Score=113.13 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=107.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchh----HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRK----VSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 83 (172)
.+++|.|.++.|+..+.+.++..+++++.|+++||+||+ +.+.+..... ........+++|.+.+.|++.|++.
T Consensus 31 l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~ 108 (382)
T PRK11128 31 LKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFF 108 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999984 3333222221 2222334588999999999999998
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
+...+...++..++ +++|++..+......++|..++|.+++ ...++++||..|+..++..++..
T Consensus 109 ~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg--~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 109 SPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTG--KLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred cccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHH--HHHHHcChhHHHHHHHHHHHHHH
Confidence 88888877777766 466888899988888999999999998 44456699999987765444333
No 94
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.65 E-value=1.9e-15 Score=117.02 Aligned_cols=148 Identities=14% Similarity=-0.049 Sum_probs=107.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhh--hhhccchhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA--LGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++++|.|..+.++..+...++..++.++.|+++||+|||+.+........+... .....++.+...+.+++.|++...
T Consensus 286 ~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 365 (467)
T PRK09556 286 FQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFG 365 (467)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999999876665444333322 222335666666778888865433
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHh-hhc--C-------CCCcchHHHHHhhhHHHHHHHHhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNC-TQK--I-------KGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~-~~~--~-------~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
..........|.+|+++|+++.++.+...++ |..++|.+.+ +.. . ....+|+..|.+..+..++..+..
T Consensus 366 ~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 366 PQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 3333345677999999999999999988886 7789999888 433 0 004579999988766666554443
Q ss_pred h
Q 041620 155 S 155 (172)
Q Consensus 155 ~ 155 (172)
.
T Consensus 446 ~ 446 (467)
T PRK09556 446 A 446 (467)
T ss_pred H
Confidence 3
No 95
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.65 E-value=4.2e-15 Score=115.79 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=105.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhh---hhccchhHHHHHHHHHHhhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSAL---GVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+++|.+..+.++......++..++.++.|+++||+|||+.+..+.+...+.... ....++...+.+.+++.|++.+.
T Consensus 279 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 358 (490)
T PRK10642 279 HNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC 358 (490)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 456788888888888888999999999999999999999988877654433222 22234567777888888888777
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
..+....+..|.+|++.|+++++..+.....++.++|.+.+ +.... .+|+..++...+.+++..+..++.+
T Consensus 359 ~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 359 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhc
Confidence 77778888899999999999999743334455667787776 32211 2466666655556555555444444
No 96
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.65 E-value=2.6e-15 Score=121.12 Aligned_cols=136 Identities=10% Similarity=-0.094 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhcc
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM 97 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 97 (172)
......+..++.+++.++.|+++||+|||++++.+.++.++++++..+.++...+++.+++.|++.+...+....+++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666789999999999999999999999999999999988888887777777888888988888888999999999
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 98 TTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
+|++.|++++|+.+....+|.+++|.+++ +... +...+|++.++..++..++..++
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999987 4321 34566766666655555544433
No 97
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.64 E-value=2.5e-15 Score=114.02 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhc
Q 041620 17 LLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSE 96 (172)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 96 (172)
+.++..+...++..++.++.|++.||+|||+.+..+..+..++.......++.+...+..++.|++.+..++.......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555667778888999999999999999999988888888877777777888888888999999999888887888889
Q ss_pred cCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 97 MTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 97 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
..|+++|++..++++....+|..++|.+.+ ...+..||+..+++.+...++..+...+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAG--LVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877 3334558999998877766665554443
No 98
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.64 E-value=4.2e-15 Score=112.88 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhcc
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM 97 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 97 (172)
.+.+.+...++..++.+..|+++||+|||+.+..+.....+..+.....++.+.+.+.+++.|++.+...+...+.+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 44555666778888999999999999999999988888777777666677888888899999999999889888999999
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 98 TTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.|+++|++.+++++....+|..++|.+++ ...+..+|+..|++.++..++..+...+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G--~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGA--AISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHH--HHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 4445668999999888777766655443
No 99
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.64 E-value=3.3e-15 Score=114.05 Aligned_cols=145 Identities=10% Similarity=-0.013 Sum_probs=119.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++.+|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.....+.++.+...+..++.|++.+...
T Consensus 251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (417)
T PRK10489 251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS 330 (417)
T ss_pred HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 34478899999999999999999999999999999888888888887777777777777888777888888999888777
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
+...+++.|..|++.|++.+++++....+|..++|.+.+ ...+..|++..+...+...++..+..
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G--~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLG--GLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHH--HHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999998 33445577777776666555544433
No 100
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.62 E-value=7.9e-15 Score=114.31 Aligned_cols=144 Identities=14% Similarity=0.062 Sum_probs=113.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHH-HHHHHHHHHHhhhhhhcc---chhHHHHHHHHHH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKVS-ILIGGVAFLAGSALGVCA---FNIYMLIFGRLLL 79 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 79 (172)
++.|.|.++++.. +...... ++.+++|+++||+ |||+. +..+.+..+++...+.+. ++++.+.+.+++.
T Consensus 40 ~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~ 117 (491)
T PRK11010 40 TVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVI 117 (491)
T ss_pred HhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4568888888886 3333333 6899999999999 99886 556666666665555553 5788888899999
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCC-CcchHHHHHhhhHHHHHHHHhhhh
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKG-GWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
+++.+...+...++..|++|+|+|+++.++...+..+|..+++.+.. ...+ ..|||..|++.++..++..+...+
T Consensus 118 ~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~--~l~~~~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 118 AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLAL--WLADRYLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998877 3333 359999999988776665544433
No 101
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.62 E-value=8.7e-15 Score=110.67 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=105.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH-HHHHhh-hhhhccchhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGV-AFLAGS-ALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.+++|.|.++++++.+...+...+++++.|.++||+||++....... ...+.. .....+++++.+++.|.+.+.+.+.
T Consensus 31 l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 110 (382)
T TIGR00902 31 LKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSA 110 (382)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcc
Confidence 46789999999999999999999999999999999998543322211 111111 2333568899999999999998888
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAP 146 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 146 (172)
..+...++..+. +++|++..+......++|..++|.+++ ...+.+|||..|.+....
T Consensus 111 ~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g--~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 111 GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFG--GLIGMFDEQNILAILTAG 167 (382)
T ss_pred chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHH--HHHHHcChhHHHHHHHHH
Confidence 788888877654 577899999999999999999999988 444567999998876554
No 102
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.62 E-value=9.9e-15 Score=110.76 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=106.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---ccc-----hhHHHHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CAF-----NIYMLIFGRLLL 79 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~l~ 79 (172)
++++|.|+++.++..+...++..+++++.|+++||+|||+.++.+....++...... ..+ ......+.+++.
T Consensus 30 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (396)
T TIGR00882 30 HDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYL 109 (396)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999887666654433221 111 233445667888
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
|++.+...+....+..|.. ++++...+......++|..++|.+++ ... ..+|+..|++.++..++..+..+.
T Consensus 110 g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g--~l~-~~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 110 GFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG--ILF-SIDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh--hhh-ccCchHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777766643 33455667777788899999999987 222 248999999887777665544433
No 103
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.62 E-value=5.5e-15 Score=109.49 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=130.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---ccchhHHHHHHHHHHhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CAFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~ 82 (172)
+.++.++++..|.+++...++.++.+.+++.+++.+|+|+|+.++.+..++++++.+.. ...++..++++.++.|.|
T Consensus 38 ~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~G 117 (422)
T COG0738 38 HLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASG 117 (422)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999999999999999998875 457889999999999999
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC----------------CCCcchHHHHHhhhH
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI----------------KGGWGWRISLAMAAA 145 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~----------------~~~~~w~~~~~~~~~ 145 (172)
.+...+..+.++....|+++..+.+++.+.++.+|..++|.+++ +... .+...|+.+|...+.
T Consensus 118 i~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~ 197 (422)
T COG0738 118 IGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAG 197 (422)
T ss_pred hHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999988888999999999999999999998 3221 011247788877766
Q ss_pred HHHHHHHhhhhhc
Q 041620 146 PASILTIGASDWW 158 (172)
Q Consensus 146 ~~~~~~~~~~~~~ 158 (172)
..++..+.....+
T Consensus 198 ~lvll~v~~~~~k 210 (422)
T COG0738 198 LLVLLAVLILLSK 210 (422)
T ss_pred HHHHHHHHHHhcc
Confidence 6555555444333
No 104
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3e-15 Score=112.41 Aligned_cols=142 Identities=25% Similarity=0.342 Sum_probs=113.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--c-----hhHHHHHHHHHHhhhh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--F-----NIYMLIFGRLLLGVGI 83 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~l~g~~~ 83 (172)
-+.++...+.+.....+|.++|++++|++.||+|||+++...+++++++.+++++. + -.+++...|+++|+|.
T Consensus 79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI 158 (538)
T KOG0252|consen 79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI 158 (538)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence 45677788888999999999999999999999999999999999999998876654 1 2467888999999999
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-h----hcCCCC--------cchHHHHHhhhHHHHHH
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-T----QKIKGG--------WGWRISLAMAAAPASIL 150 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~----~~~~~~--------~~w~~~~~~~~~~~~~~ 150 (172)
|+.+|...+..+|...++.||...+........|...+..++. + ....+. .=||..+.+.+++++..
T Consensus 159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876666666555555443 2 111111 13999998877776655
Q ss_pred HH
Q 041620 151 TI 152 (172)
Q Consensus 151 ~~ 152 (172)
..
T Consensus 239 ly 240 (538)
T KOG0252|consen 239 LY 240 (538)
T ss_pred HH
Confidence 44
No 105
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.61 E-value=1.8e-14 Score=112.21 Aligned_cols=137 Identities=10% Similarity=-0.056 Sum_probs=105.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~ 86 (172)
+++|.++.+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+..... .+.+......++.+......
T Consensus 304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (496)
T PRK03893 304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI 383 (496)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence 5788999999999999999999999999999999999999888876666554433322 33444444445444433334
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHH
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPA 147 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 147 (172)
.+..+.++.|.+|+++|++.+++++....+|..++|.+.+ ...+..||+..+...+...
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g--~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGA--LIAQRLDLGTALASLSFSL 442 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHH--HHhccCChHHHHHHHHHHH
Confidence 5667788999999999999999999999999999999988 4445668887775544433
No 106
>PRK12382 putative transporter; Provisional
Probab=99.60 E-value=7.2e-15 Score=111.29 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhcc
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEM 97 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 97 (172)
.+.......++..+++++.|++.||+|||+.+..+..+..++.......++.+...+..++.|++.+...+.......|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 44555667778889999999999999999999988888888877777778888888889999999988888888889999
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 98 TTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
+|+|+|++..++++....+|..++|.+.+ ...++.||+..|...+...++..+...
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g--~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAG--MLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 444556899999988777666555433
No 107
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.60 E-value=1.4e-14 Score=108.81 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=115.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++++|.++++.++..........++.++.|++.||+|||+.+..+.+...+........++.+...+.+++.|++.+...
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 306 (375)
T TIGR00899 227 IHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILA 306 (375)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999988877777778889999999999999999888777666555555556777878888889999888888
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
+....+..|..|+ +|++++++++...++|..++|.+.+ ...+..+|+..+++.++..++..+..
T Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g--~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 307 GIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGG--ILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhccchhHHHHHHHHHHHHHHHH
Confidence 8888888998875 4569999999999999999999988 33345589999988777766555443
No 108
>PRK03545 putative arabinose transporter; Provisional
Probab=99.59 E-value=2.8e-14 Score=108.06 Aligned_cols=147 Identities=14% Similarity=0.053 Sum_probs=114.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhh-hhhccchhHHHHHHHHHHhhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA-LGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
+++.|.|.++.++..+...++..+++++.|+++||++||+... +..+...+.. .....++.+.+.+..++.|++....
T Consensus 233 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~ 311 (390)
T PRK03545 233 QQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCI 311 (390)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcc
Confidence 3457889999999999999999999999999999999887544 4443333333 3344567788888888999988776
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.+.....+.|..| ++|++++++++....+|..++|.+++ ...++.|++..+...+...++..+......
T Consensus 312 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 312 GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN--QVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 6777788888876 68899999999999999999999998 555677999999988777766555444333
No 109
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.57 E-value=3.2e-14 Score=108.78 Aligned_cols=145 Identities=15% Similarity=0.092 Sum_probs=95.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---cc----h-hHHHHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---AF----N-IYMLIFGRLLL 79 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~----~-~~~~~~~~~l~ 79 (172)
++++|.|+.+.|++.+...++..+++++.|+++||+|||++++.+..+.++....... .+ + .....+.++..
T Consensus 38 ~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (420)
T PRK09528 38 HDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYL 117 (420)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999988776655443322111 11 1 11112223333
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
|.+.....+....+..+ . +++|++.++..+...++|..++|.+++ +. + .+|+..|+..++..++..+..++..
T Consensus 118 ~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~---~-~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 118 GFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILF---N-INPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred hhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHH---h-cCchHhHHHHHHHHHHHHHHHhccc
Confidence 33332222223333222 2 345677888888888999999999988 43 2 3789999887777665555444433
No 110
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.57 E-value=3.2e-14 Score=109.04 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=113.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHhhhhhhccch------hHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKV-SILIGGVAFLAGSALGVCAFN------IYMLIFG 75 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 75 (172)
.++++|+++.+.|.+.+...+...+..|+.|+++|| +|||| .++.+....+++.+.+...++ ...+.+.
T Consensus 26 ~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 105 (437)
T TIGR00792 26 YTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYIT 105 (437)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 356789999999999999999999999999999997 67744 566777777777666655432 4556667
Q ss_pred HHHHhhhhhhhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHh-hh-cC---CCCcchHHHHHhhhHHHHH
Q 041620 76 RLLLGVGIGFGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KI---KGGWGWRISLAMAAAPASI 149 (172)
Q Consensus 76 ~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~---~~~~~w~~~~~~~~~~~~~ 149 (172)
+++.+++.+.......++..|.. ++++|++..+..+.+..+|..+++.+.. +. .. .+..+|+..+.+.+++.++
T Consensus 106 ~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~ 185 (437)
T TIGR00792 106 YILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVV 185 (437)
T ss_pred HHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHH
Confidence 78888888888888888889987 4688999999988888888777666544 21 11 2356899999888877766
Q ss_pred HHHhhh
Q 041620 150 LTIGAS 155 (172)
Q Consensus 150 ~~~~~~ 155 (172)
..+...
T Consensus 186 ~~~~~~ 191 (437)
T TIGR00792 186 SLIICF 191 (437)
T ss_pred HHHHHH
Confidence 554443
No 111
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.56 E-value=5.8e-14 Score=106.10 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=109.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS 89 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 89 (172)
+.|.++++.+...+...++..+++++.|++.||+|+|+++..+.....++..... + ........++.|++.....+.
T Consensus 229 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~ 305 (381)
T PRK03633 229 HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPV 305 (381)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHH
Confidence 4588889999999998999999999999999999999998888777776654432 2 223345667778777777888
Q ss_pred hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
....+.|..|+++++...+.++...++|..++|.+++ ...++.+|++.|.+.+...++..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G--~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 306 AMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTA--MLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCccHHHHHHHHHHHHHHH
Confidence 8888999999888888888888889999999999998 334456788888887666654443
No 112
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.55 E-value=1.3e-13 Score=106.70 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=123.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHhhhhhhc--------cchhHHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRK--VSILIGGVAFLAGSALGVC--------AFNIYMLIFGRL 77 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 77 (172)
++++|++.++...+.....+..++|++++|++.||+|.| ++++.+.+++.+..+...+ .++.+.+++..+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 457899999999999999999999999999999999999 8888888777555444343 567888999999
Q ss_pred HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
+.|+..|..++..-++.+|..|+++.+..+|++.......+.++|++.+ +....+ +-|..+....++.++..++...
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998 554444 3677776666665555554433
Q ss_pred h
Q 041620 157 W 157 (172)
Q Consensus 157 ~ 157 (172)
.
T Consensus 467 v 467 (477)
T PF11700_consen 467 V 467 (477)
T ss_pred c
Confidence 3
No 113
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.54 E-value=6.9e-14 Score=109.33 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=127.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++++|.++...|++.+...+|.++|+++.+++.+|+++++.+..+.+..++..+..++.++.+...+..++.|++.....
T Consensus 246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~ 325 (524)
T PF05977_consen 246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN 325 (524)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
+..++.+.+..|++.||+.+++++.....+..+|.++.+ ...+..|.+..+.+.++..++..++..
T Consensus 326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G--~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG--FLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 444556788888776665444444333
No 114
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.54 E-value=7.5e-15 Score=114.26 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=129.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHH-HHHHhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFG-RLLLGVGIG 84 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~~~~ 84 (172)
+.+++++.+.++++|+.++......+..|+.+.+.||+|.|++.+.+.++..++.++..+++++|.+++. .++.|+|.+
T Consensus 71 ~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~ 150 (509)
T KOG2504|consen 71 ELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLG 150 (509)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccch
Confidence 3567889999999999999999999999999999999999999999999999999999999999887765 788899999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
..+......+..++ +|+|+.++|+...+.++|..+-|.+.. .+.+..|||+.+++.+...+-.++......
T Consensus 151 ~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~--~l~~~~G~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 151 LIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLK--YLLSKYGWRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred hhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHH--HHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999888777 688999999999999999988888855 556677999999988777755544444333
No 115
>PRK03699 putative transporter; Provisional
Probab=99.54 E-value=8.7e-14 Score=105.60 Aligned_cols=144 Identities=14% Similarity=0.063 Sum_probs=115.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++++|.|+++.+...+...++..++.++.|+++||++||+.+.....+..+........++.+...+..++.|++.+..+
T Consensus 233 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 312 (394)
T PRK03699 233 QKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIY 312 (394)
T ss_pred HHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999888877777666666666777777777888898888777
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
+....+..|..| +++++..+.......+|..++|.+.+ ...+..|++..++...+..++..+..
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G--~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 313 TTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTS--PIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHH--HHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 877777788775 44677788888888899999999988 34445688888887777666554433
No 116
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.54 E-value=5.4e-14 Score=108.16 Aligned_cols=147 Identities=10% Similarity=-0.075 Sum_probs=107.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cc------hhHHHHHHHH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AF------NIYMLIFGRL 77 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~ 77 (172)
++.|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.+...+ .+ +...+....+
T Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (481)
T TIGR00879 312 ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL 391 (481)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHH
Confidence 456788888888888888999999999999999999999999887777776655541 12 2222222222
Q ss_pred HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
..+.......+....+..|.+|+++|++.+++.+...++|..++|.+.+ ...++.+|++.|++.+..+++..+...+.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP--TMLESIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCccceehhHHHHHHHHHHHHhee
Confidence 2222222334666777899999999999999999999999999999877 33344578888888777766665554433
No 117
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.52 E-value=2.5e-13 Score=102.72 Aligned_cols=139 Identities=9% Similarity=-0.007 Sum_probs=119.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
++.|.++++.+.......++.+++.++.+++.||+|+|+.+.++.+...+......+.++.+.+++.+.+.|++.+...+
T Consensus 233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~ 312 (382)
T TIGR00902 233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL 312 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999988899999999999999999999999999999999988888899999999999999999999999
Q ss_pred chhhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
....++.+. |+++|++..++++ ....+|..++|.+++ ...++.++ ..|...+..+++..
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G--~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG--FIYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccH-HHHHHHHHHHHHHH
Confidence 999999998 9999999999976 467899999999999 44455565 55655555555443
No 118
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.51 E-value=1.6e-13 Score=103.20 Aligned_cols=136 Identities=16% Similarity=0.062 Sum_probs=104.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhh-h-hhhc--cchhHHHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS-A-LGVC--AFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~l~g~~~~ 84 (172)
++++.++++.+.......++..++.++.|+++||+|||+.+.....+..+.. . .... .++.+......++.|++.+
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (394)
T TIGR00883 248 QTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGG 327 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5578889999999999999999999999999999999998775554443322 1 1222 2466777777888899888
Q ss_pred hhccchhhhhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHH
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAP 146 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~ 146 (172)
...+....++.|.+|+++|+++.++ ++....+|..++|.+.+ ...++.+ |+..++.....
T Consensus 328 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g--~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 328 MYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA--ALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH--HHHHHcCcchhHHHHHHHH
Confidence 8889999999999999999999998 56666788889999988 2223334 77666554443
No 119
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.51 E-value=8.5e-14 Score=107.62 Aligned_cols=142 Identities=10% Similarity=0.011 Sum_probs=111.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh--hchhHHHHHH--HHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA--LGRKVSILIG--GVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~--~gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
++.|.++.+.+...+...++..+++++.|+++|| +++|+...+. .+...+..+.....++++.+++.+++.|++.+
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g 348 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFG 348 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence 3468899999999999999999999999999997 3344333333 33333444445566788888889999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCc-chHHHHHhhhHHHHHHHH
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGW-GWRISLAMAAAPASILTI 152 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~ 152 (172)
...+.....+.|.+|++++++.+++++....+|..++|.+++ ...+.. +|+..|++.++..++..+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G--~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG--RLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee--eeehhcCCcchHHHHhhHHHHHHHH
Confidence 888889999999999999999999999999999999999988 444444 588888887766554433
No 120
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.50 E-value=1.3e-13 Score=104.27 Aligned_cols=132 Identities=13% Similarity=0.002 Sum_probs=105.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhh-hhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSA-LGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++.|.++++.+++.+...++..++.++.+++.||+|||+.+..+.....+... .....++.+.+.+..++.+++.+...
T Consensus 267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence 45789999999999999999999999999999999999998888766533332 22334566666666677777777777
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAM 142 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~ 142 (172)
+..+.++.|.+|+++|++.+|+.+....+|..++|.+.+ .+.++.| |+..+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g--~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 347 GILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA--LLAQRLDEYGTALAS 400 (405)
T ss_pred hhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH--HHHHhccccchhHHh
Confidence 788889999999999999999999999999999999998 3334445 6555543
No 121
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.50 E-value=4.3e-13 Score=100.69 Aligned_cols=143 Identities=14% Similarity=0.036 Sum_probs=102.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhH--HHHH------HHHHHHHhhhhhhccchhHHHHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKV--SILI------GGVAFLAGSALGVCAFNIYMLIFGRLLL 79 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (172)
+++.+.++.+.++..+...++..++.++.|+++||++||+ .... +.+...+........++.+.......+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (399)
T TIGR00893 243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALG 322 (399)
T ss_pred HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999996 1111 1111111111111223444444444444
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHHHHHHh
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPASILTIG 153 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~ 153 (172)
+.+.+ ..+....+..|..|+++|++.+++.+....+|..++|.+.+ ...+..+ |+..+.+.++..++..+.
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g--~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 323 FFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIG--AIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred Hhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhh--hhccCCCchhHHHHHHHHHHHHHHHH
Confidence 44444 68889999999999999999999999999999999999988 4455566 888888777766555443
No 122
>PRK09952 shikimate transporter; Provisional
Probab=99.50 E-value=7.7e-13 Score=101.84 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=103.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---c-chhHHHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---A-FNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~g~~~~ 84 (172)
+++|.+++..........+...++.++.|+++||+|||+.+..+.++..+....... . ++.+...+..++.+++.+
T Consensus 279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (438)
T PRK09952 279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD 358 (438)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456777776655555666777888999999999999999988887665554433222 2 234444555666788888
Q ss_pred hhccchhhhhhccCCccccccchhh-hhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
...+....++.|.+|++.|+++.++ ++.+..+|+.++|.+.+ +....+ .+|+..+....+..++..+...
T Consensus 359 ~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 359 MVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999998 45556688999999988 432221 2477777776666665554433
No 123
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.50 E-value=2.9e-13 Score=102.93 Aligned_cols=145 Identities=20% Similarity=0.209 Sum_probs=122.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccc--hhHHHHHHHHHHhhhhhhhc
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAF--NIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~ 87 (172)
+++|+++..-+.+.+.--.-....+.||++||+ |+|+++..+.++..++.+....++ ....+.++..+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 779998888777777665667888999999995 999999999999999999988874 67888999999999999999
Q ss_pred cchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 88 QSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
+....++.|.+|+++ |-...++++.+.++|+.++|.+.+ ...+..||...|.+.++......+.....
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~--~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG--LLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH--HHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999998655 666788899999999999999987 66677799999998877766655543333
No 124
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.50 E-value=1.9e-13 Score=105.98 Aligned_cols=150 Identities=11% Similarity=-0.018 Sum_probs=106.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--ch-hH-HHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FN-IY-MLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~l~g~~~~ 84 (172)
++.|.+.+...+......+...++.++.++++||+|||+.++.+.++.+++.+..... ++ .+ ....+.++.+.+.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (479)
T PRK10077 299 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 378 (479)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 3456666666677777778889999999999999999999999998888877665432 12 11 22233444444444
Q ss_pred h-hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh---cCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 85 F-GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ---KIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 85 ~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
. ..+....++.|.+|+++|++++++.+....+|..+++.+.. +. ...+..+|+..|++.++.+++..+..++..
T Consensus 379 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
T PRK10077 379 MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 457 (479)
T ss_pred ccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhcc
Confidence 3 23567899999999999999999999999888888866654 22 233456788888887776666555444433
No 125
>PRK15075 citrate-proton symporter; Provisional
Probab=99.49 E-value=4.8e-13 Score=102.83 Aligned_cols=118 Identities=13% Similarity=-0.005 Sum_probs=86.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhh-h-h--ccchhHHHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSAL-G-V--CAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~g~~~~ 84 (172)
+..|++.++.++......++..++.++.|+++||+|||+.++.+.....+.... . . ..++.........+.+++.+
T Consensus 267 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (434)
T PRK15075 267 TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYG 346 (434)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 447888888888888888999999999999999999999887765444322211 1 1 12333344444555667777
Q ss_pred hhccchhhhhhccCCccccccchhhh-hHHHHHHHHHHHHHHh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGF-QLCAAIGLLSANLLNC 126 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~ 126 (172)
...+....+..|.+|++.|++..++. +.+..+++.++|.+.+
T Consensus 347 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g 389 (434)
T PRK15075 347 SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST 389 (434)
T ss_pred HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence 66666778899999999999999995 4444455777888877
No 126
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.49 E-value=1.9e-13 Score=106.90 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=116.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cchhHHHHHHHHHHhhhhhh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~ 85 (172)
..-|+...+++.....+..++.++++|.++||++|||+++.+.++..+......+ ..+.+.+++..++.|++.+.
T Consensus 40 lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~ 119 (524)
T PF05977_consen 40 LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAF 119 (524)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 3457788888889989999999999999999999999999998777655443332 24788899999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
..+..++.+.|..|+|+...++++.+...++...+||.+++ +. ...|-.+.|.+.++..++....
T Consensus 120 ~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv---a~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 120 FNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV---AFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 33 2236677888776665554433
No 127
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=101.11 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=128.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
.+..++.+..+..+++.....|..+++..+|.++|++|||+.+....+..++..++...++|+..+++.|.+.|+|.|+
T Consensus 104 l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg- 182 (528)
T KOG0253|consen 104 LDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG- 182 (528)
T ss_pred HHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-
Confidence 3456778889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.+...++-.|..|..+|...+-+. ..+.+|.++...++- ....+.||||.+.....+..+...+.++.+
T Consensus 183 ~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law--~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 183 LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW--GVMSNFGWRYLLFTSSTPLMFAARFLVWVY 251 (528)
T ss_pred ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence 888899999999999999887777 888999999888875 222345999998888877666666555555
No 128
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.48 E-value=5.3e-13 Score=103.10 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=112.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh----hhchhHHHHHH-HHHHHHhhhhhhccchh-------------
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTR----ALGRKVSILIG-GVAFLAGSALGVCAFNI------------- 69 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr~~~~~~~-~~~~~~~~~~~~~~~~~------------- 69 (172)
.+++|.++.+.+.+.....+...+.+|+.|+++| |+||||.++.+ .....++..+..++++.
T Consensus 31 l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~ 110 (477)
T TIGR01301 31 VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK 110 (477)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence 3568899999999999999999999999999999 59999998875 55555555555555443
Q ss_pred ----HHHHHHHHHHhhhhhhhccchhhhhhccCCcccc--ccchhhhhHHHHHHHHHHHHHHh-hh--cC----CCC---
Q 041620 70 ----YMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYR--GTFNIGFQLCAAIGLLSANLLNC-TQ--KI----KGG--- 133 (172)
Q Consensus 70 ----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~-~~--~~----~~~--- 133 (172)
+...+...+..++....++...++++|.+|+++| +.+.++.+...++|..+++.+++ .. .. .+.
T Consensus 111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 2233344455567777888899999999998865 57889899999999999999887 31 10 000
Q ss_pred ---cchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 134 ---WGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 134 ---~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
.+.+..|++.++..++..+...+..+
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~ 219 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVK 219 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 26788998877766665555444433
No 129
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.48 E-value=4.5e-13 Score=101.74 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=107.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhhhcc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
++|.+.++.+...+...++..+++++.+++.||+|||+.+..+..+..++....... ++.... ..++.|++.+...+
T Consensus 234 ~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~ 311 (393)
T PRK09705 234 EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFP 311 (393)
T ss_pred HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHH
Confidence 368899999999999999999999999999999999999888877776666544332 222222 23456777777777
Q ss_pred chhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 89 SVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 89 ~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
.......+..+ +++|++..++.+....++..++|.+.+ +....+ +|+..|.+....+++..+....+.+
T Consensus 312 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 312 LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhcc
Confidence 77666677775 678999999999999999999999988 332222 3777777766666555444444333
No 130
>PRK10504 putative transporter; Provisional
Probab=99.48 E-value=9.5e-13 Score=102.02 Aligned_cols=117 Identities=11% Similarity=0.014 Sum_probs=98.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhhhhh
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~ 86 (172)
..|.++.+.++......++..++.++.+++.||+|||+++..+..+..+...+..+. ++.+...+..++.|++.+..
T Consensus 291 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (471)
T PRK10504 291 GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTR 370 (471)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 468889999999888888888899999999999999999998888777766554443 33444445667788888888
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+..+.+..+..|+++|++.+++.+....+|..+++.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999987
No 131
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.47 E-value=1.1e-12 Score=99.84 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=106.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHhhhhhh-----ccchhHHHHHHHHHHhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSIL-IGGVAFLAGSALGV-----CAFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~ 82 (172)
+++|.++++.++......++..++++..|+++||+|||+.+. .+.+...+...... ..++.+...+..++.|++
T Consensus 250 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~ 329 (402)
T TIGR00897 250 AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIF 329 (402)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 447888999999888899999999999999999999888754 33333333222222 124566677788888888
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.+...+ ......|.. +++|++++++.+....+|..++|.+.+ ...+..||+..+++.++..++..+...+
T Consensus 330 ~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g--~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 330 LAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAV--LFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 776544 445566754 568999999999999999999999988 3345568999998887776666555444
No 132
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.47 E-value=4e-13 Score=103.77 Aligned_cols=146 Identities=14% Similarity=0.011 Sum_probs=97.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHhhhhhhc--cchhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--GRKVSI-LIGGVAFLAGSALGVC--AFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~ 82 (172)
+++.|.+.++.++......++..++.++.|+++||+ +||+.. .....+..++...... ..+.+...+..++.|.+
T Consensus 281 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 360 (452)
T PRK11273 281 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFL 360 (452)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 345788888899888888899999999999999999 555432 2222222232222222 23444444455555554
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHH-HHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLL-SANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..........+..|.+|++.|++++++.+....+|+. .+|.+.+ ...++.||+..|++....+++.++...
T Consensus 361 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g--~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 361 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG--YTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH--HHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3332333445678999999999999999888888765 4788877 334556899999887776666554444
No 133
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.46 E-value=9.4e-13 Score=101.23 Aligned_cols=144 Identities=17% Similarity=0.067 Sum_probs=97.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--c-hhHHHHHH---HHHHHHhhhhhhccchhHHHHHHHHHHhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--G-RKVSILIG---GVAFLAGSALGVCAFNIYMLIFGRLLLGV 81 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g-r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 81 (172)
+++.|.+..+.+...+...++..++.++.|+++||+ + |++..... .....+...... ..+........+..|+
T Consensus 271 ~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 349 (434)
T PRK11663 271 SETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGF 349 (434)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999 3 23322221 111111111111 2333333334444454
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
+.............|.+|+++|++.+++.+....+|..++|.+.+ ...+..||+..|+..++..++..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g--~l~~~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 350 FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLA--KVLEIWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHH--HHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 332222333456789999999999999999999999999999988 44456689999988877766655543
No 134
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.3e-12 Score=94.59 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=128.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
++++++|+|.+..|.+++...+.....+++..+++.|+|.++.+..++++.+++..+-... +.+.++....+.|.+.+.
T Consensus 37 ~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav 115 (395)
T COG2807 37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAV 115 (395)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHH
Confidence 5678999999999999999999999999999999999999999999999999999887766 778889999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
.+...+.++-+.+| |+-+..+++|....++|+.+++.+.- +.... .+||......+.++++..+..
T Consensus 116 ~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~W 182 (395)
T COG2807 116 INVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIW 182 (395)
T ss_pred HHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 45589999999999999888888876 33222 379999999999988777643
No 135
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.46 E-value=3.8e-12 Score=96.95 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=104.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----FNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~ 82 (172)
++++|.++.+.++......++..++.++.++++||+++|+.+..+.....++....... .+.+.+.+..++.|++
T Consensus 243 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g 322 (406)
T PRK15402 243 ISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFG 322 (406)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 35578899999988887888899999999999999999999888877776665554432 3556667788889999
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 150 (172)
.+...+........ .++++|++..+.++....+|..+++.+.+ ...+..++........+..++.
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 323 IGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSK--HAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHH--hcccCCchHHHHHHHHHHHHHH
Confidence 88877766665543 34589999999999999999999999987 4444445555444444443333
No 136
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.45 E-value=2e-12 Score=100.90 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=108.9
Q ss_pred CCCCCChhHHHHHHH-HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhh---hhcc-chhHHHHHHHHHHhhhh
Q 041620 9 NYSKFDSQLLTTFIS-SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSAL---GVCA-FNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~l~g~~~ 83 (172)
++.|.|+++.+.... ...++.+++.++.|+++||+|+|+.+..+.++.++.... .... ++.+.+....++..++.
T Consensus 251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG 330 (491)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 457999999999874 556899999999999999999988877665554443322 2222 35545555566656555
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
+...+...++..+..+++.+++..++.+...++|..+++.+.+ ...+..||+..|.+..+.++...+.....
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G--~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAG--WFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 6556667888899999999999999999999999888877877 33345589999988877777665555444
No 137
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.45 E-value=1.8e-12 Score=99.17 Aligned_cols=128 Identities=14% Similarity=-0.012 Sum_probs=92.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc--hhHHHHHHHHHHhhhhhhhc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF--NIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~ 87 (172)
+.|.++++.+...+...++..++.++.|++.||+|||+.+..+.++..+........+ +........+..+.+.....
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (426)
T PRK12307 260 GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVG 339 (426)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHh
Confidence 3578888889888888999999999999999999999998888877666554443322 22222222222222222334
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHH
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRIS 139 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~ 139 (172)
+..+.++.|.+|+++|++++|+.+....+|..++|.+.+ ...+..++...
T Consensus 340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g--~l~~~~g~~~~ 389 (426)
T PRK12307 340 GLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT--WLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH--HHHHcccHHHH
Confidence 556678899999999999999999888999999999988 33444555543
No 138
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.44 E-value=1.3e-12 Score=97.60 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=123.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+++|++..+...+.....+..++++++.|+|.||+|.|+++..+.++..+.++...+......++++..+.|+..|..++
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 57999999999999999999999999999999999999999999999999888888877777788889999999999999
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
..-.+..+..|+++-++.+|+|+.....++.++|.+.+ +....++ -|..+....++..+..+
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~--~r~g~~~i~vll~iGl~ 423 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS--SRAGVLSIIVLLLIGLL 423 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHhhHh
Confidence 99999999999999999999999999999999999988 5555543 45555544444444333
No 139
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.44 E-value=3.4e-12 Score=97.75 Aligned_cols=137 Identities=12% Similarity=-0.056 Sum_probs=96.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGR-KVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.+++.|.|.++.|++.+...++..+++++.|+++||+|| |+++.++.+...+......+.++++.+.+.+++.|++.+.
T Consensus 29 l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (418)
T TIGR00889 29 MSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMP 108 (418)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence 356789999999999999999999999999999999965 7788888888877777777888899999999999987765
Q ss_pred hccchhhhh----h----ccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 86 GNQSVPLYL----S----EMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 86 ~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
..+...++. . |......|.+..| .+|.+++|.+++ .......|+. |++.++..++..+
T Consensus 109 ~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g--~l~~~~~~~~-f~~~~~~~~~~~~ 174 (418)
T TIGR00889 109 TIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVS--LLDIELSNIQ-LYITAGSSALLGV 174 (418)
T ss_pred HHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHH--HhcccchhHH-HHHHHHHHHHHHH
Confidence 555444332 1 2233334555444 357778888877 2222223543 4444444444443
No 140
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.43 E-value=3.3e-12 Score=96.99 Aligned_cols=141 Identities=12% Similarity=0.144 Sum_probs=115.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
+.+.++.+...+...+...++.+..+++.||+|||+.+.++.++.++........++.+.+.+..++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888889999999999999999999999888888777767778888888889999998877766777
Q ss_pred hhhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 92 LYLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
.+..+..|++.+++..+. ++....+|..+++.+++ ...+..||+..|.+.++..++..+..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G--~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG--NMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH--HHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 788888888888888777 67889999999999988 44455689999988877766655443
No 141
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.43 E-value=6.3e-13 Score=99.08 Aligned_cols=117 Identities=12% Similarity=0.006 Sum_probs=105.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch-hHHHHHHHHHHhhhhhhhcc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN-IYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~ 88 (172)
.+|.++.+.+.......++..++.++.+++.||++||+.+..+..+.++......+.++ .+...+..++.|++.+...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (365)
T TIGR00900 241 YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV 320 (365)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999998887777777776666664 78888889999999999999
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
....++.|..|+|+|++..++++....++..++|.+.+
T Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g 358 (365)
T TIGR00900 321 PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAG 358 (365)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987
No 142
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.42 E-value=4.8e-12 Score=94.83 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=120.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~ 85 (172)
.++..|+|.+..++....+.++..+|+.+.|+++|| +.|+.+.....+.++..+...+. ++.+...+..++.|+....
T Consensus 238 L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~ 316 (394)
T COG2814 238 LESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSP 316 (394)
T ss_pred HHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence 467789999999999999999999999999999999 88888888877777766665554 5666777777778888777
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.........++ ..+|.+..+.+++....++|..+|..+++ ...+++|+....+..++..++..+......
T Consensus 317 ~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG--~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 317 ALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGG--LVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred hhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777 44688899999999999999999999999 333557899999998888777666554433
No 143
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.42 E-value=4.7e-12 Score=95.80 Aligned_cols=136 Identities=10% Similarity=0.003 Sum_probs=110.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS 89 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 89 (172)
+.|.++++.+.+.+...++..+..++.+++.||+|+|+.+..+.+..++..+.....++.+.+++..++.|++.+...+.
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 313 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLA 313 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999888999999999999999999999999999888888777777889999999999999999988888
Q ss_pred hhhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHH
Q 041620 90 VPLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASI 149 (172)
Q Consensus 90 ~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 149 (172)
...+..+. +++++++..+.++ .....|..++|.+++ ...+..++ ..++..+...+.
T Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G--~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSG--FLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccH-HHHHHHHHHHHH
Confidence 88888887 5666788888875 556678889999998 44445565 355544444443
No 144
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.42 E-value=5.1e-12 Score=97.11 Aligned_cols=142 Identities=11% Similarity=-0.056 Sum_probs=88.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh----ccchhHHHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV----CAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~ 84 (172)
++.|.+.++.+...+...++..++.++.|+++||+|||+.+.....+..+...... ..++.........+..++.+
T Consensus 272 ~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (432)
T PRK10406 272 NTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVS 351 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 45788888888888888888889999999999999999988776554433322111 12233322222222223333
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHH-HHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAA-IGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
...+....+.+|.+|+|.|++++|+.+...+ +.+...|.+.. +.. .-.|...++..+...++..+.
T Consensus 352 ~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~---~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 352 FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS---IGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHH
Confidence 3345567889999999999999999665444 43445777665 321 112545555544444444433
No 145
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.39 E-value=4.1e-12 Score=97.44 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=94.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhhhccchhh
Q 041620 14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGFGNQSVPL 92 (172)
Q Consensus 14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~ 92 (172)
++.+.++......++.+++.++.++++||+|+|+++..+..+.+++.....+. ++.+.+.+..++.|++.+..++...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778889999999999999999999999999988887777665554 46667777788889999988888889
Q ss_pred hhhccCC-------ccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 93 YLSEMTT-------PKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 93 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+++|..| ++++|+..++++....+|..+++.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888865 456788899999999999999999888
No 146
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.38 E-value=1.3e-11 Score=96.02 Aligned_cols=146 Identities=8% Similarity=-0.038 Sum_probs=101.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRK-------VSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGV 81 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 81 (172)
+++|.+..+.+...+...++..++.++.|+++||++|| ........+..+........++.+...+..++.++
T Consensus 281 ~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~ 360 (476)
T PLN00028 281 DRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSI 360 (476)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999875 22223333333333444445566655556666666
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
+.+...+....+..+.. +++|++..++.+...++|..++|.+.. ..+..+|+..|++.++..++..+..++.+
T Consensus 361 ~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~---~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 361 FVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF---TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH---hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 66555555666666664 578999999988888888888877643 22234688899888776666655555444
No 147
>TIGR00895 2A0115 benzoate transport.
Probab=99.38 E-value=4e-12 Score=95.82 Aligned_cols=119 Identities=16% Similarity=0.110 Sum_probs=98.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
.++.+.++++.+...+...++..++.++.+++.||+|||+......+............++.+...+..++.|++.+...
T Consensus 277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 356 (398)
T TIGR00895 277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQ 356 (398)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999999999999999955544444333333333335667777788899999999999
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+...+++.|.+|+++|++..++.+....+|..++|.+.+
T Consensus 357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999876
No 148
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.37 E-value=7.3e-12 Score=93.66 Aligned_cols=152 Identities=22% Similarity=0.165 Sum_probs=117.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--GRKVSI-LIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~ 82 (172)
.|..|+|..+.++..+.+-++++.|+++.||++||. |||... ++.++...++....-.. +|+++..++.++.|+.
T Consensus 280 ~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~ 359 (448)
T COG2271 280 SEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL 359 (448)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999995 666443 33344444444444444 4568888999999998
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhccch
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYRY 161 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (172)
.-+.+-.......|..|++--|++.|+...+..+ |...+....+ ...|.+||...|.+..+.+++..++.......+
T Consensus 360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g--~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLG--YIADTWGWDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcce--eeEecCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 8777777788889999999999999999888887 7777777655 555668999999888777777666555444433
No 149
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.37 E-value=1.9e-11 Score=93.12 Aligned_cols=141 Identities=12% Similarity=0.027 Sum_probs=96.9
Q ss_pred CCCCCCChhHHHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hcc-chhHHHHHHHH----H
Q 041620 8 SNYSKFDSQLLTTFISSLY-ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCA-FNIYMLIFGRL----L 78 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----l 78 (172)
.++.|.++++.++...... .+.+++.++.+++.||+|||+.+..+..+..+..+.. ... ++.+.+....+ .
T Consensus 237 ~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (402)
T PRK11902 237 IRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLC 316 (402)
T ss_pred HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3457899999999876654 5688999999999999999998877766655544332 233 45555555443 4
Q ss_pred HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
.|++.+...+....++.+.+|.+++ ++++...+++...++.+++ ...+..||+..|.+.+..+++..+..
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G--~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 317 GGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSG--YLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 5555666677777777777776554 5555555667665666676 33456799999998877776655443
No 150
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.36 E-value=1.8e-11 Score=87.04 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=100.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-------chhHHHHHHHH
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-------FNIYMLIFGRL 77 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 77 (172)
++.++.+|.|.+|...+.+...+|..+ .++.|.+.||+|++.++.++.+...++......+ .++|.+.+..+
T Consensus 26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~ 104 (250)
T PF06813_consen 26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF 104 (250)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence 456788999999999999999999886 4889999999999999999999999988765543 36778878888
Q ss_pred HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+.|.+.+..++.......+.+| ++||++.++.-...++++.+-..+..
T Consensus 105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~ 152 (250)
T PF06813_consen 105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYS 152 (250)
T ss_pred HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHH
Confidence 8888888777887777788887 68999999988888888776655554
No 151
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.36 E-value=1.3e-11 Score=93.54 Aligned_cols=141 Identities=12% Similarity=0.004 Sum_probs=103.6
Q ss_pred CCCCCChhHHHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc------cchhHHHHHHHHHHhh
Q 041620 9 NYSKFDSQLLTTFISSLY-ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC------AFNIYMLIFGRLLLGV 81 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~ 81 (172)
+|.|.++++.++...... ....++.++.|++.||+|+|+.+..+..+..+....... .++.+.......+.++
T Consensus 236 ~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (390)
T TIGR02718 236 VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSL 315 (390)
T ss_pred HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence 356999999999888776 466778999999999999999988776655332222211 1233344444555666
Q ss_pred hhhhhccchhhhhhccCCc-cccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 82 GIGFGNQSVPLYLSEMTTP-KYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
+.+..++.......+..++ +++++.+++.+...++|..++|.+++ ...+..|++..|...+...++..
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G--~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAG--YLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccHHHHHHHHHHHHHHH
Confidence 7777777788887777776 88999999999999999999999998 33345578888887766555443
No 152
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.35 E-value=1.9e-11 Score=92.88 Aligned_cols=118 Identities=10% Similarity=-0.103 Sum_probs=97.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++.+|.++.+.|...+...++.+++++..+++.||.++|+.+..+.. ..+......+.++.+...+..++.|++.+...
T Consensus 233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~ 311 (393)
T PRK11195 233 PVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFV 311 (393)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence 45678999999999999999999999999999999999988877753 33434444456677777778888999998888
Q ss_pred cchhhhhhccCCccc-cccchhhhhHHHHHHHHHHHHHHh
Q 041620 88 QSVPLYLSEMTTPKY-RGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+..++.+.|..|+|. ++++.++.+...+++..++..+.+
T Consensus 312 ~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 351 (393)
T PRK11195 312 VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS 351 (393)
T ss_pred hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH
Confidence 888888888766654 799999999999999999988877
No 153
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.35 E-value=8.2e-12 Score=96.13 Aligned_cols=150 Identities=13% Similarity=-0.005 Sum_probs=96.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH---Hhhhhhhc--cchhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFL---AGSALGVC--AFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~l~g~~ 82 (172)
++..|.++.+.++......++..++.++.|+++||+++++....+..... ++...... ..+.+......+..|++
T Consensus 279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 358 (438)
T TIGR00712 279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFL 358 (438)
T ss_pred HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999965432222322221 11111111 22334333444455544
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHH-HHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIG-LLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
.............|.+|+++|++++++.+....+| ..++|.+.+ ...++.||...+.+.....++..+...+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 359 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG--YTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 32222222345779999999999999998877776 468899988 3344557888888766665555554444443
No 154
>TIGR00898 2A0119 cation transport protein.
Probab=99.35 E-value=1.4e-11 Score=96.25 Aligned_cols=130 Identities=18% Similarity=0.024 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchh--HHHHHHHHHHhhhhhhhccchhhhhhccCCcc
Q 041620 24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNI--YMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPK 101 (172)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 101 (172)
...+..+++.++.+++.||+|||+.+..+.++.+++.+...+.++. +......++.+++.+..++....+..|.+|++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 3445667788999999999999999999998888887776665433 44555566677777777888899999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 102 YRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
.|++++++.+....+|..++|.+.+ . +..++...+.+.+...++..+...+.
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY--L--GEKWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH--H--HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999865 1 12245566666666665555544443
No 155
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.35 E-value=1.5e-11 Score=93.63 Aligned_cols=139 Identities=9% Similarity=-0.057 Sum_probs=103.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620 13 FDSQLLTTFISSLYITGILASLIASSVTR-ALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++..+....++.+.+.+...+.+++.+...+...
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~ 319 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARE 319 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHH
Confidence 36678888877777766666655666665 56767777777777777777777778887777778888898888888889
Q ss_pred hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcc-hHHHHHhhhHHHHHHH
Q 041620 92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWG-WRISLAMAAAPASILT 151 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~-w~~~~~~~~~~~~~~~ 151 (172)
+++.|..|+++|++.+++++....+|..++|.+++ +....+..+ ....+....+..++..
T Consensus 320 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 320 TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 433322222 2445544444444443
No 156
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.33 E-value=1.8e-11 Score=104.00 Aligned_cols=136 Identities=13% Similarity=0.037 Sum_probs=112.8
Q ss_pred CCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 9 NYSKFDSQ-LLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 9 ~~~~~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
+.+|.+.. +.+++.+...++.++++++.++++||+++++.+.++.++.+++.+......+.+.+++..++.|++.+...
T Consensus 261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 340 (1146)
T PRK08633 261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFI 340 (1146)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 45788888 89999999999999999999999999999998888888888777777777788888888999999999988
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHH
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAP 146 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~ 146 (172)
+...+++.+..|++.|++++++.+....+|..+++.++. +.. ...++...+.+.+..
T Consensus 341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~--~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG--LGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHH
Confidence 889999999999999999999999999999888877776 322 123455555544443
No 157
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.32 E-value=2.3e-11 Score=92.06 Aligned_cols=147 Identities=10% Similarity=0.011 Sum_probs=101.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-cchhHHHHHHHHHHhhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-AFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~ 86 (172)
++..|.++++.++..+...++..++.++.+++.||+|+|+.+..+..+..++.+.... .++.+...+..++.+.+....
T Consensus 227 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 306 (382)
T PRK10091 227 MFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFAL 306 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999998888877777655443 445555566666666665444
Q ss_pred ccchh-hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 87 NQSVP-LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 87 ~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.+... ....+..+++.++.. ..+....+|..++|.+++ +... ..+|+..+...+....+.........
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 307 SAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL--GLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred hHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc--ccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 44333 334444444545443 346677899999999998 3321 24688888877666555444333333
No 158
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.32 E-value=2e-11 Score=92.56 Aligned_cols=149 Identities=11% Similarity=-0.073 Sum_probs=103.0
Q ss_pred CCCCCCChhHHHHHH--HHHHHHHHHHHHhh-hhhhhhhchhHHHHHHHHHH-HHhhhhhh---ccch-hHHHHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFI--SSLYITGILASLIA-SSVTRALGRKVSILIGGVAF-LAGSALGV---CAFN-IYMLIFGRLLL 79 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~gr~~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~~~~l~ 79 (172)
.++.|.|.+++|.+. ....+...+.+|+. ++..||+||||..++.+.+. ........ ...+ ..++.....+.
T Consensus 28 l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (390)
T TIGR02718 28 LREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACA 107 (390)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 456799999999973 55577787888888 55799999998875555332 21111111 2222 33344455556
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
++..+...+....+..|..++++++...+....+..+|..+++...+ ...+..+||..|++.+...++..+...+..
T Consensus 108 ~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~--~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 108 SLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTL--VLFGKFGQRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 67777777888888888888888888888888888888888887765 334556899999998887766555544443
No 159
>PRK09669 putative symporter YagG; Provisional
Probab=99.31 E-value=1.8e-11 Score=94.35 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=105.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHhhhhhhccc------hhHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKV-SILIGGVAFLAGSALGVCAF------NIYMLIFGR 76 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 76 (172)
.+++|+|+.+.|.+.++.-+...+..|+.|+++|| +|||| .++.+....++...+....+ ..+.+.+..
T Consensus 37 t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~ 116 (444)
T PRK09669 37 TDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTY 116 (444)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999998 77754 45556565555554433332 244555566
Q ss_pred HHHhhhhhhhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHh-h-hcC---CCCcchHHHHHhhhHHHHHH
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKI---KGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~---~~~~~w~~~~~~~~~~~~~~ 150 (172)
.+.+.+......+..++..|+. ++++|.+..+....+..+|..+++.+.. + ... .+..+|+..+.+.++...+.
T Consensus 117 ~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~ 196 (444)
T PRK09669 117 ILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL 196 (444)
T ss_pred HHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 6677777777888889999998 4577998888887777787777765543 1 122 12357888887777666555
Q ss_pred HHhhh
Q 041620 151 TIGAS 155 (172)
Q Consensus 151 ~~~~~ 155 (172)
.+..+
T Consensus 197 ~~~~~ 201 (444)
T PRK09669 197 FFCCF 201 (444)
T ss_pred HHHHh
Confidence 44333
No 160
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.31 E-value=3e-11 Score=94.56 Aligned_cols=130 Identities=13% Similarity=-0.057 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc----hhHHHHHHHHHHhhhhhhhccchhhhhhccCCc
Q 041620 25 LYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF----NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTP 100 (172)
Q Consensus 25 ~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 100 (172)
..++.+++.++.++++||+|||++++.+..+..+......... +...+....+...++.....+....+.+|.+|+
T Consensus 344 ~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~ 423 (502)
T TIGR00887 344 ALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT 423 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence 3456667888999999999999999888877766655444321 111111111111222222345667778999999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHh-hhcCCC-------CcchHHHHHhhhHHHHHHHHhh
Q 041620 101 KYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG-------GWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 101 ~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-------~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
+.|+++.++.+....++..++|.+.+ +..... ..++...+.+.++..++..+..
T Consensus 424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999877 322110 2345566777666666554443
No 161
>PRK10054 putative transporter; Provisional
Probab=99.31 E-value=2.5e-11 Score=92.37 Aligned_cols=138 Identities=9% Similarity=0.046 Sum_probs=107.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhhhcc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+.+.+++..+.......+......++.|++.||+++|+.+..++.+..++.....+. ++.+.+.+..++.|++.+...+
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 317 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP 317 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777777777777788899999999999999998988888777666654 5777777888999999988888
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 150 (172)
.....+.+..|++.|++..+..+ ...+|..++|.+++ ...++.+....|++.+....+.
T Consensus 318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G--~l~~~~g~~~~~~~~~~~~~~~ 376 (395)
T PRK10054 318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSG--VILTTLPPWSLFVILALAIVAA 376 (395)
T ss_pred hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHH--HHHHHcChhhHHHHHHHHHHHH
Confidence 88889999999999999988755 45589999999998 3334556667776654444333
No 162
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.30 E-value=2.6e-11 Score=94.15 Aligned_cols=119 Identities=12% Similarity=0.080 Sum_probs=103.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc----cchhHHHHHHHHHHhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC----AFNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~ 83 (172)
++.+|.++.+.++......++..+++++.|++.||+|||+.+..+..+.+++...... ..+.+......++.|++.
T Consensus 283 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~ 362 (485)
T TIGR00711 283 QQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGM 362 (485)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999988888877776552 235566677788899999
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+...+.......+..|+++|+++.++++....+|..+++.+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 363 GCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred HHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777788888899999999999999999999999999887
No 163
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.30 E-value=4.8e-11 Score=92.71 Aligned_cols=142 Identities=13% Similarity=0.003 Sum_probs=104.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHHHHHHHHH-Hhhhhhhccchh-HHHHHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-----RKVSILIGGVAFL-AGSALGVCAFNI-YMLIFGRLLL 79 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----r~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~ 79 (172)
.++++|+|+++++...+...+...+- +++|.++||++ ||+.++++.++.. +........++. ....+..++.
T Consensus 52 l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~ 130 (468)
T TIGR00788 52 LTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLA 130 (468)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 35678999999999989888888874 45999999997 7777777776663 433333333443 3444478899
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhH---HHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQL---CAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
+++.+....+..++..|..+ |++....+.... ..++|..+++.+++ ...+..+|+..|++.+...++..+
T Consensus 131 ~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G--~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 131 ALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG--PLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH--HHHHhcCcchHHHHHHHHHHHHHH
Confidence 99999999999999999998 655554444433 34579999999988 333556899999888777666543
No 164
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.29 E-value=3.6e-11 Score=93.98 Aligned_cols=119 Identities=9% Similarity=-0.059 Sum_probs=103.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~ 84 (172)
++..|.|+.+.+.......++..+++++.|++.||+|+|+.+..+.++..++...... .++.+......++.|++.+
T Consensus 287 q~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g 366 (495)
T PRK14995 287 QFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAA 366 (495)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHH
Confidence 4457899999999999999999999999999999999999988888887776655433 2455666778889999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
...+.....+.+..|+++++.+.++++....+|..+++.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 367 SALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG 408 (495)
T ss_pred HHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 988889999999999999999999999999999999988877
No 165
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.28 E-value=1.1e-10 Score=88.84 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=105.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
.+++|.++++.+.......++..++.++.+++.||.+++..+....+.......+....++.+.+.+..++.|++.+...
T Consensus 244 ~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~ 323 (394)
T PRK10213 244 MNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVP 323 (394)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
Confidence 34678999999999999999999999999999999654443443333333434444455677777888899999999888
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHH
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 150 (172)
+...+++.+..| +++++..+......++|..++|.+++ ...+..|++..+...+...++.
T Consensus 324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G--~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 324 VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGG--YALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccChhhHHHHHHHHHHHH
Confidence 888989999887 55667778888888999999999999 4445567777777765544333
No 166
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.28 E-value=1.9e-10 Score=86.58 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=96.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----chhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----FNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~ 82 (172)
++++|.++++.+.+.....++..++.++.|++.||+|||+.+..+..+..++....... ++........++.|++
T Consensus 234 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 313 (385)
T TIGR00710 234 IDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIG 313 (385)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999888877776665544432 2344455567788898
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNCTQKIKGGWGWRISLAM 142 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~w~~~~~~ 142 (172)
.+...+.......|..| ++|+++.++++..... |...++.++ ...+..+|...+..
T Consensus 314 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 314 NSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS---LIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH---hccccChHHHHHHH
Confidence 88888888888888876 6789999998776654 555555543 22233345444443
No 167
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.26 E-value=4.4e-11 Score=91.49 Aligned_cols=133 Identities=12% Similarity=0.021 Sum_probs=89.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHH-HHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVS-ILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS 89 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 89 (172)
.+.++.+.+.......++..++.++.|+++||++||+. .........++.......++......+..+.+++.....+.
T Consensus 274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 353 (412)
T TIGR02332 274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAI 353 (412)
T ss_pred CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhH
Confidence 46778888988999999999999999999999997764 33333344333322222222222222222333333333333
Q ss_pred hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCc-chHHHHHhhhH
Q 041620 90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGW-GWRISLAMAAA 145 (172)
Q Consensus 90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~w~~~~~~~~~ 145 (172)
......|.+|+|+|++++++.+....+|..++|.+.+ ...+.. +|+..+.+.+.
T Consensus 354 ~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g--~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 354 FWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG--ILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc--cccccCCCCchhHHHHHH
Confidence 4455678899999999999999999999999999987 444444 48888776544
No 168
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.24 E-value=1e-10 Score=99.55 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=107.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--------------------c
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--------------------F 67 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--------------------~ 67 (172)
++.+|.++.+.+++.+...++.++++++.|+++||.++++.+..+.++..+..+...+. .
T Consensus 253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 34578899999999999999999999999999998877766555554444433322221 6
Q ss_pred hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHH
Q 041620 68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAP 146 (172)
Q Consensus 68 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~ 146 (172)
+.+.+.+..++.|++.+...+...+++.+..|+++||+++|+++....+|..+++++.+ +.. ...++...+++.+..
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~--~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA--LGFSIPWIILFIALA 410 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHH
Confidence 67778888899999999999999999999999999999999999999999999999887 421 123555555554443
No 169
>PRK10133 L-fucose transporter; Provisional
Probab=99.24 E-value=2e-10 Score=88.56 Aligned_cols=136 Identities=5% Similarity=-0.070 Sum_probs=103.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++.+|.++.+.+.....+.++..+++++.+++.||+|||+++..+.++.++......+.++. .......+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999988887776666555554443 23456778899999999
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHH
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPAS 148 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~ 148 (172)
|.......|..|+ +.+.+.++... ...|+.++|.+.+ ...+..| -+..|++..+..+
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G--~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMG--FVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHH--HHHHhccchHHHHHHHHHHHH
Confidence 9999999999865 45777777654 3356777777766 3334445 6777766444433
No 170
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.23 E-value=4.3e-11 Score=89.55 Aligned_cols=105 Identities=21% Similarity=0.218 Sum_probs=87.9
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----------chhHHHHHHHHH
Q 041620 11 SKFDSQLLTTFISSLY-ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----------FNIYMLIFGRLL 78 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l 78 (172)
.|.++++.+.+..... ++..++.++.|++.||+|||+.+..+.++.++........ ++.+.+..+.++
T Consensus 239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (356)
T TIGR00901 239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITL 318 (356)
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 7889999998887665 6788999999999999999999888887777665544332 345677778889
Q ss_pred HhhhhhhhccchhhhhhccCCccccccchhhhhHHHH
Q 041620 79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAA 115 (172)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 115 (172)
.+++.+..++...+++.|.+|+|+|++.++++++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 319 EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999877654
No 171
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.23 E-value=1.8e-10 Score=84.98 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=101.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+.+|.++++.+...+.+..+..++.++.+++.||+|+|+.+..+..+.+++.++....++... ....++.|++.+..+|
T Consensus 171 ~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P 249 (310)
T TIGR01272 171 HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFP 249 (310)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999988888777777655544444332 3456688999999999
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhH
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAA 145 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 145 (172)
...+...+..|++ .+++.++. ....+|+.+.|.+.+ ...|..+.+..+++...
T Consensus 250 ~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G--~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 250 TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQG--SLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHH--HHHHhccchHHHHHHHH
Confidence 9999888888754 45566665 456688999999877 44455577777764433
No 172
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.23 E-value=2.2e-11 Score=91.11 Aligned_cols=131 Identities=18% Similarity=0.126 Sum_probs=93.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHH-HHH-HHHHHhhhhhhc--cchhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-RKVSIL-IGG-VAFLAGSALGVC--AFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~ 82 (172)
+++.|.++++.+...+...++..++.++.+++.||.. ||+... ... ............ ..+.+...+..++.|+.
T Consensus 244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 323 (379)
T TIGR00881 244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFL 323 (379)
T ss_pred HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999864 333222 221 112222222222 23555556666777776
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISL 140 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~ 140 (172)
.....+....+..|..|+++|+++.++.+....+|..++|.+.+ ...+..||+..|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~f 379 (379)
T TIGR00881 324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG--YLADGFGWAGAF 379 (379)
T ss_pred HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH--HHHHhhcccccC
Confidence 65556666778899999999999999999999999999999988 444556777543
No 173
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.22 E-value=1.9e-10 Score=84.81 Aligned_cols=85 Identities=14% Similarity=0.229 Sum_probs=76.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+++|+++.|++.+....+....+..++.|.++||+|||+.-+..+++..++++ .-..++++.++++|++.|++....++
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999885 45568999999999999999999888
Q ss_pred chhhhh
Q 041620 89 SVPLYL 94 (172)
Q Consensus 89 ~~~~~~ 94 (172)
.-.++.
T Consensus 141 ~FEsW~ 146 (354)
T PF05631_consen 141 AFESWM 146 (354)
T ss_pred HHHHHH
Confidence 766554
No 174
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.22 E-value=2.8e-10 Score=88.20 Aligned_cols=148 Identities=16% Similarity=0.005 Sum_probs=96.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHH--------HHHHHHHH--HHhhhhhhc-cchhHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVS--------ILIGGVAF--LAGSALGVC-AFNIYMLIFGR 76 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~--------~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~ 76 (172)
++.+|.+..+.++..+...++..++.++.|+++||+++|+. +..+.... .+..+.... ..+.+..++..
T Consensus 289 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (465)
T TIGR00894 289 SWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIIL 368 (465)
T ss_pred HHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 45678899999999999999999999999999999875421 11111111 111111111 23444444455
Q ss_pred HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
.+.+.+.+...+.......|..| +.++..+++.+....+|+.++|.+.+ +....+..+|+..|.+.+...++..+...
T Consensus 369 ~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 369 TLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 55555555444545555556665 48999999999999999999999987 32222223588899888777666655444
Q ss_pred h
Q 041620 156 D 156 (172)
Q Consensus 156 ~ 156 (172)
.
T Consensus 448 ~ 448 (465)
T TIGR00894 448 I 448 (465)
T ss_pred e
Confidence 3
No 175
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.21 E-value=8.2e-11 Score=87.36 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=99.2
Q ss_pred CCCCCCC-hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---chhHHHHHHHHHHhhhh
Q 041620 8 SNYSKFD-SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---FNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 8 ~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~ 83 (172)
++++|.+ ..+.+.......+...++.++.|++.||+++|+..........+........ ++........++.|++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 313 (352)
T PF07690_consen 234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGF 313 (352)
T ss_dssp CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5667888 7899999999999999999999999999998887777777666666555443 45577777888899999
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHH
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSAN 122 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 122 (172)
+...+....++.|..|+|+|++..++.+...++|..++|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 314 GIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999987
No 176
>PRK09848 glucuronide transporter; Provisional
Probab=99.20 E-value=2.6e-10 Score=88.06 Aligned_cols=119 Identities=10% Similarity=0.102 Sum_probs=94.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~ 85 (172)
++.+|.++...++......++.+++.++.+++.||+|+|+.+..+.++.+++.+...+. ++.+...+..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 34566666655555555567788899999999999999999999988888777666554 3567777778889999999
Q ss_pred hccchhhhhhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
..+...+..+|..|.+ ++|..+++++....+|..+++.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888754 3588889999999999999988877
No 177
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.20 E-value=9.4e-10 Score=83.42 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=76.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++++|.++.+.+...+...++..++.++.+++.||+|||+.+..+..+..++.....+.++.+.......+.+.+.+...
T Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 310 (392)
T PRK10473 231 MEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGF 310 (392)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999988888777766665554444444444444443333
Q ss_pred cchhhhhhccCCccccc-cchhhhhHHHHHHHHHHHHHH
Q 041620 88 QSVPLYLSEMTTPKYRG-TFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~g~~~~~~~~ 125 (172)
+. ....+..|.++|+ .+.++......+|..+++.+.
T Consensus 311 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 311 GV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2334455555543 333334444444444444443
No 178
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.4e-10 Score=86.69 Aligned_cols=152 Identities=14% Similarity=0.040 Sum_probs=112.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-------chhHHHHHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-------FNIYMLIFGRLLL 79 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 79 (172)
.+++++.++.+.+.......+...+..+..|+++||+|.+|++......+++........ .+....+...+..
T Consensus 245 ~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l 324 (417)
T COG2223 245 LVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLAL 324 (417)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999988888877766554 3444444444444
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
+++.|..+......+...+|+ +-|.+.|+.....++|+..-|..-+ ...... .++..|++.....++..+......
T Consensus 325 ~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 325 FVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455556666666643 6688899999999999888887766 333332 488899888887777776655555
Q ss_pred cch
Q 041620 159 YRY 161 (172)
Q Consensus 159 ~~~ 161 (172)
.|+
T Consensus 402 ~r~ 404 (417)
T COG2223 402 ARR 404 (417)
T ss_pred Hhc
Confidence 444
No 179
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=86.32 Aligned_cols=132 Identities=14% Similarity=-0.000 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCcccc
Q 041620 24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYR 103 (172)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 103 (172)
+..+.-..|.++.+++.||+|||+.+-...+++++..++...+.+-....+..+..-++..+.+.+.+.|..|.+|++.|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence 34567788999999999999999999999999999888777664333333444444455555677899999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 104 GTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 104 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
+++.|..+....+|++++|+++- .... +-..+..+.+..+++..+...+++.
T Consensus 469 atgvGtcSsmaRIggI~~p~iA~--~~e~--s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 469 ATGVGTCSSMARIGGIFSPVIAM--RAEL--STSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hcchhhhhhHHhhhhhhhhHHHH--Hhcc--ceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999975 1111 1223444445555555555555553
No 180
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.19 E-value=1.8e-10 Score=87.25 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=120.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhh
Q 041620 13 FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPL 92 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 92 (172)
.+++..|.+.+...+.-++.-.+..++.+|+|.|+.++++..++.+=..+++++++.+.+.+.+.+.++..+.......-
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888878888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhccc
Q 041620 93 YLSEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWYR 160 (172)
Q Consensus 93 ~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 160 (172)
|+++.+|+|..++...+ ++....+|..+.+.+++ ...|+.|.+..|++.+...+...++..+..++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G--~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG--YLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH--hhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 99999999998888888 57888899999888888 55577789989988777766655555554433
No 181
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.18 E-value=2.7e-10 Score=87.53 Aligned_cols=148 Identities=15% Similarity=0.165 Sum_probs=116.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHhhhhhh-cc---c-hhHHHHHHHHHHhhhh
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGR-KVSILIGGVAFLAGSALGV-CA---F-NIYMLIFGRLLLGVGI 83 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~l~g~~~ 83 (172)
|.+-+.+..|++.+...++..++++.+|++++|.+. |+.++.+.++.++++.+.. .. + ..+.+.++|++.|+|.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV 144 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence 477788999999999999999999999999999996 8888999999999998873 32 3 5788899999999998
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCC---------c-chHHHHHhhhHHHHHHHH
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGG---------W-GWRISLAMAAAPASILTI 152 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~---------~-~w~~~~~~~~~~~~~~~~ 152 (172)
+. ....-.|+++....++|.++++....+..+|..+||.+.. +..+.+. + -+..+-++.++..++.++
T Consensus 145 ~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v 223 (488)
T KOG2325|consen 145 GN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV 223 (488)
T ss_pred cc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence 75 7778899999988999999999998888889999988876 4332211 1 134455566666665555
Q ss_pred hhhhhc
Q 041620 153 GASDWW 158 (172)
Q Consensus 153 ~~~~~~ 158 (172)
...+..
T Consensus 224 ~i~~~f 229 (488)
T KOG2325|consen 224 IILFFF 229 (488)
T ss_pred HHHhhe
Confidence 544444
No 182
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.18 E-value=4.3e-10 Score=87.44 Aligned_cols=119 Identities=4% Similarity=-0.046 Sum_probs=103.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----------chhHHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----------FNIYMLIFGRL 77 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 77 (172)
++..|.++++.|.......++.+++....+++.+|++.|+++.++.++.+++....... ++.+......+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35789999999999999999999999999999999999999999999888876543211 33344556678
Q ss_pred HHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 78 LLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 78 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+.+++.+..+.+...++++..|++++++..+++++..++|..+++.+++
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg 408 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV 408 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999998887
No 183
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.18 E-value=2.3e-10 Score=85.63 Aligned_cols=116 Identities=11% Similarity=0.025 Sum_probs=90.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+.|.|+++.+...+...++.++++++.|+++||+ +||+.+..+..+.+++.....+.++.... ....+.|++.+..++
T Consensus 226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~ 304 (355)
T TIGR00896 226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFP 304 (355)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhH
Confidence 4688999999999999999999999999999999 56667777777777766655554433222 245678999988888
Q ss_pred chhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 89 SVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 89 ~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.....+.+..+ +++++...++.+....++..++|.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G 343 (355)
T TIGR00896 305 LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVG 343 (355)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665554 566788889888888889999999988
No 184
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.15 E-value=2.3e-09 Score=80.69 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=82.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---c-cchhHHHHHHHHHHhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---C-AFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~g~~~~ 84 (172)
+++|.++++.++......++..++.++.+++.||+|||+.+..+..+..+...... . ..+.+...+...+.+.+.+
T Consensus 223 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T PRK11102 223 ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVS 302 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999998888766444332221 1 2344444444445555555
Q ss_pred hhccchhhhhhccCCccccccchhhhhHH-HHHHHHHHHHHHh
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLC-AAIGLLSANLLNC 126 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~ 126 (172)
.........+.|..| ++|++..++.+.. ..+|..+++.++.
T Consensus 303 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 303 MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666777765 7899999986554 4567777777654
No 185
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.7e-10 Score=90.23 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=127.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG--RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.+..+.++++...+.++..+...++.++.|+++|+.. ++.+..++.+..+++.....+.++++.++..-.+.|++.|.
T Consensus 325 ~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~ 404 (509)
T KOG2504|consen 325 AKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGS 404 (509)
T ss_pred HhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999988 55667777777788888888999999999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHHHHHHhhhhhc
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
........+.|..+.++-..+.|+...+..++..++|.+++ ...+..+ |...|+..++..++.....+..+
T Consensus 405 ~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag--~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 405 FSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG--LLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce--eeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 88888889999999999999999999999999999999998 3333333 88888888887776665444433
No 186
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.14 E-value=1.6e-10 Score=88.72 Aligned_cols=153 Identities=17% Similarity=0.161 Sum_probs=113.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh----hhchhHH-HHHHHHHHHHhhhhhhcc-c-------hhHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTR----ALGRKVS-ILIGGVAFLAGSALGVCA-F-------NIYMLIF 74 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr~~~-~~~~~~~~~~~~~~~~~~-~-------~~~~~~~ 74 (172)
.+..++++...+.+....-+...+..|+.|+++| |+||||. ++.+....+++..++... + ....+.+
T Consensus 29 ~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~ 108 (428)
T PF13347_consen 29 TDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFV 108 (428)
T ss_pred HHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHH
Confidence 4567999999999999999999999999999999 8997765 445667777776665544 2 2234466
Q ss_pred HHHHHhhhhhhhccchhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-hh-cCCCC---cchHHHHHhhhHHHH
Q 041620 75 GRLLLGVGIGFGNQSVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KIKGG---WGWRISLAMAAAPAS 148 (172)
Q Consensus 75 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~---~~w~~~~~~~~~~~~ 148 (172)
..++..++....+....++..|..+ +++|.+..+.-+.+..+|..+...+.. +. ...+. .+|++...+.+++.+
T Consensus 109 ~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~ 188 (428)
T PF13347_consen 109 FYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGL 188 (428)
T ss_pred HHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHH
Confidence 6777789999999999999999998 468999999988888888866655555 22 22221 279998888887777
Q ss_pred HHHHhhhhhccc
Q 041620 149 ILTIGASDWWYR 160 (172)
Q Consensus 149 ~~~~~~~~~~~~ 160 (172)
+..+...+..++
T Consensus 189 v~~~i~~~~~ke 200 (428)
T PF13347_consen 189 VFFLITFFFVKE 200 (428)
T ss_pred HHhhhhhheeee
Confidence 665554444443
No 187
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.14 E-value=7.6e-10 Score=86.16 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=101.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh----hhch-hHHHHHHHHHHHHhhhhhhccc------hhHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTR----ALGR-KVSILIGGVAFLAGSALGVCAF------NIYMLIFGR 76 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 76 (172)
++..|+++...|.+..+.-+...+..|+.|+++| |+|| |+.++.+....+++..++...+ .+..+.+..
T Consensus 34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~ 113 (473)
T PRK10429 34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY 113 (473)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4567999999999999999999999999999999 6698 4556667666666654443322 133444555
Q ss_pred HHHhhhhhhhccchhhhhhccC-CccccccchhhhhHHHHHHHHHHHHHHh-h-hcC---CCCcchHHHHHhhhHHHHHH
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMT-TPKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKI---KGGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~---~~~~~w~~~~~~~~~~~~~~ 150 (172)
.+.+++.........++..|.. ++++|.+..+.-..+.++|+.+.+.+.. + ... .+..+|+....+.++..++.
T Consensus 114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~ 193 (473)
T PRK10429 114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS 193 (473)
T ss_pred HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 6678888888889999999998 5888999888866666666555544432 1 111 12235777666666655544
Q ss_pred HHhh
Q 041620 151 TIGA 154 (172)
Q Consensus 151 ~~~~ 154 (172)
.+..
T Consensus 194 ~~~~ 197 (473)
T PRK10429 194 TIIT 197 (473)
T ss_pred HHHH
Confidence 4333
No 188
>PRK11043 putative transporter; Provisional
Probab=99.14 E-value=3.8e-09 Score=80.37 Aligned_cols=117 Identities=9% Similarity=-0.105 Sum_probs=88.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hc--cchhHHHHHHHHHHhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VC--AFNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l~g~~~ 83 (172)
++.|.++++.++......++..++..+.+++.||+|+|+..........+..... .. .++.+.......+.|++.
T Consensus 231 ~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (401)
T PRK11043 231 EQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAAN 310 (401)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 3468899999988888888889999999999999999987655544444333221 11 244555556667788888
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+..++.......|..| ++|+++.++++.....+...++.+.+
T Consensus 311 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g 352 (401)
T PRK11043 311 GAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777775 67999999999887778788888777
No 189
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.13 E-value=7e-10 Score=79.67 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=105.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVA-FLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.++++|+|+...+.+.+.......+.+++.|.++||+|++...+.+..+ ...+.....+ +.+.-+....++|+....
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHH
Confidence 3678999999999999999999999999999999999999776665443 3344433333 233334566778888887
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHH-HhhhHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISL-AMAAAPASILT 151 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~-~~~~~~~~~~~ 151 (172)
.-......++...|+++-|++.+..++..++|-.+.|.+++ +....+.+.|--.| .+.+..++...
T Consensus 369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV 436 (459)
T ss_pred HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 76667888899999999999999999999999999999999 43333323344444 44444444333
No 190
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.12 E-value=3e-09 Score=80.33 Aligned_cols=135 Identities=8% Similarity=0.001 Sum_probs=87.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch---hHHHHH-HHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGR---KVSILI-GGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
.+.+.+ .+.......+...++ .++++||..| |+.... ..+..++.........+.+...+...+.+++....
T Consensus 222 ~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (368)
T TIGR00903 222 AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPA 297 (368)
T ss_pred CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhh
Confidence 345544 455555555544444 4677777654 333232 33333443334444444444455566677777777
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
.+...++.+|.+|+|.|++++|+.+....+|+..+|.+.+ .. . +.+..|.+.++..++..+..
T Consensus 298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~---~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 298 YAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI---S--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh---c--CHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999999999999999999988877 33 1 55666766666666555443
No 191
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.08 E-value=5.8e-09 Score=79.54 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=88.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
++.|+|.+|+|.+.+...+..+++++++|+++||.+ +|+.+.+..++.++..+.....++++.+....++..+......
T Consensus 30 ~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~ 109 (400)
T PF03825_consen 30 ESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTM 109 (400)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHH
Confidence 457899999999999999999999999999999986 5777777777777766666677888888888888888887778
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHH
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANL 123 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 123 (172)
+...++..+... +++.-.|-.-...++|..++..
T Consensus 110 pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~ 143 (400)
T PF03825_consen 110 PLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAAL 143 (400)
T ss_pred HHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHH
Confidence 888888777765 3344455555566666665543
No 192
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.07 E-value=2.2e-09 Score=82.86 Aligned_cols=138 Identities=12% Similarity=-0.059 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-c-----chhHHHHHHHHHHhhhhhhhccchhhhhhc
Q 041620 23 SSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-A-----FNIYMLIFGRLLLGVGIGFGNQSVPLYLSE 96 (172)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 96 (172)
....+...+..++.|+++||+|+|+++.++.+...+....... . .+++.+.+..+...++.|..+.....++.+
T Consensus 293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~ 372 (462)
T PRK15034 293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV 372 (462)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence 3345677888999999999999999999888777666543221 1 245655555555445555555556666666
Q ss_pred cCCc---------------------cccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 97 MTTP---------------------KYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 97 ~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
.+|+ ++-|.+.|+......+|+.+.|.+-+ .....+ ++...|+......++..+..
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 450 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLLT 450 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH
Confidence 6653 13456677788888888888886655 322222 47777877777766666665
Q ss_pred hhhccchh
Q 041620 155 SDWWYRYS 162 (172)
Q Consensus 155 ~~~~~~~~ 162 (172)
++.+.|+.
T Consensus 451 w~~y~r~~ 458 (462)
T PRK15034 451 WLVYGRRK 458 (462)
T ss_pred HHHhccCC
Confidence 55554443
No 193
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2.6e-09 Score=82.50 Aligned_cols=148 Identities=13% Similarity=0.072 Sum_probs=106.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chh--HH---HHHHHHHH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNI--YM---LIFGRLLL 79 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~--~~---~~~~~~l~ 79 (172)
++.|++.++..+.+....+...+.++++.++.||.|||+.++.++.++.+....+... ... |. .+++.++.
T Consensus 298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~ 377 (485)
T KOG0569|consen 298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF 377 (485)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999888877665543 111 22 23334444
Q ss_pred hhhhhh-hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 80 GVGIGF-GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 80 g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.++.+. ..|...-+.+|.+|++.|..+++.......+...+...... ...+..|- +.|++..+++.+..+..++..
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp--~l~~~~g~-~~filF~i~~~~~~i~~~~~l 454 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP--PLQNVIGP-YVFILFVIPLAIFLIYLYRYL 454 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcc-hhhHHHHHHHHHHHHHHHHhC
Confidence 333333 36778889999999999999999987777777666655544 22222232 567777777776666555544
Q ss_pred c
Q 041620 159 Y 159 (172)
Q Consensus 159 ~ 159 (172)
|
T Consensus 455 P 455 (485)
T KOG0569|consen 455 P 455 (485)
T ss_pred c
Confidence 4
No 194
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.06 E-value=3.9e-09 Score=80.45 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=105.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHH----HHHHhhhhhhhc
Q 041620 13 FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFG----RLLLGVGIGFGN 87 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~l~g~~~~~~~ 87 (172)
.+.+..+...+...++-++.-...+++..|+|.|+++.++.+..++=..+.... ++.+...+. ..+.|+..+...
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 556666766677677777888899999999999999999999998887777766 555444333 456899999999
Q ss_pred cchhhhhhccCCccccccchhhhhH-HHHHHHHHHHHHHh-hhcCCC---CcchHHHHHhhhHHHHHHHHh
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQL-CAAIGLLSANLLNC-TQKIKG---GWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~---~~~w~~~~~~~~~~~~~~~~~ 153 (172)
.....++.+..|++.|+++.++++. ..++|..++..+++ +..... .+.|...+.+.+...++..++
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999766 46789999999998 322111 123445555555544444433
No 195
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=99.03 E-value=5.1e-09 Score=75.40 Aligned_cols=132 Identities=30% Similarity=0.359 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch--hHHHHHHHHHHhhhhhhhccchhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN--IYMLIFGRLLLGVGIGFGNQSVPLY 93 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~ 93 (172)
.+.++..+...++..++.++.|++.||+|||+.+..+......+.+...+..+ .+.+.+.|+..|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 47888889999999999999999999999998888887665555555555554 8889999999999999999999999
Q ss_pred hhccCCc-cccccchhhhhH-HHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHH
Q 041620 94 LSEMTTP-KYRGTFNIGFQL-CAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPAS 148 (172)
Q Consensus 94 ~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~ 148 (172)
+.|..|+ ++|+...+.... ....|..++|.+++ +... ...+|+..+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 9999988 678888888777 57788888887776 3333 55689987766555443
No 196
>PRK09669 putative symporter YagG; Provisional
Probab=99.02 E-value=5.4e-09 Score=80.73 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-c-cchhHHHHHHHHHHhhhhhhhccchhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-C-AFNIYMLIFGRLLLGVGIGFGNQSVPLY 93 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 93 (172)
+..+.+.....+..+++.++.++++||+|+|+.+..+.+..++...... . .++.+.+.+..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677888999999999999999999888766554333222 2 3567777888889999999999999999
Q ss_pred hhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620 94 LSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 94 ~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
++|..|.+ ..|...+.++....+|..+++.+++
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988622 2244567788888899999998887
No 197
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.01 E-value=7.2e-09 Score=80.71 Aligned_cols=113 Identities=10% Similarity=0.131 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc-----cchhHHHHHHHHHHhhhhhhhcc
Q 041620 14 DSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC-----AFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 14 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+++..+.+.+...++.+++.++.++++||+|+|+.+..+..+.+++.+.... .++.+.+++..++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777888999999999999999999998888776655544322 34566777778888999998888
Q ss_pred chhhhhhccCCc-------cccccchhhhhHHHHHHHHHHHHHHh
Q 041620 89 SVPLYLSEMTTP-------KYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 89 ~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
...++++|..|. +..|...+.......+|..+++.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999762 22344677888888899999888877
No 198
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.01 E-value=5.6e-09 Score=80.28 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc--hhHHHHHHHHHHhhhhhhhccchhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF--NIYMLIFGRLLLGVGIGFGNQSVPLY 93 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 93 (172)
+..+.......++..++.++.++++||+|+|+.+..+.++.+++.+...+.+ |.+.+++..++.|++.+..+....++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5667777788899999999999999999999999999999999888877764 89999999999999999999999999
Q ss_pred hhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620 94 LSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 94 ~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
++|..+.+ +.|..++.++....++..+++.+.+
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99998733 3467788888888888888888776
No 199
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.98 E-value=3.1e-08 Score=79.67 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=112.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccc--------hhHHHHHHHHHH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAF--------NIYMLIFGRLLL 79 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~ 79 (172)
+.+|.+.+....+...+....-+...+.|+++|+ +||++.+..+.++..++..+..+.. .....+++..+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 4578888888877777777777888999999996 6999999999999888887766531 123356677888
Q ss_pred hhhhhhhccchhhhhhccCCccc---cccchhhhhHHHHHHHHHHHHHHh-hhcC----CCCcchHHHHHhhhHHHHHHH
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKY---RGTFNIGFQLCAAIGLLSANLLNC-TQKI----KGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~-~~~~----~~~~~w~~~~~~~~~~~~~~~ 151 (172)
.+|.|..-+...+...|.+++++ |.....+++.+.++|+.+++.+.. +... .+..+|...|.+.++..++..
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 89999999999999999997643 556777788888999998888866 4311 123479999998888777665
Q ss_pred Hhhh
Q 041620 152 IGAS 155 (172)
Q Consensus 152 ~~~~ 155 (172)
+...
T Consensus 176 lvf~ 179 (654)
T TIGR00926 176 IVFM 179 (654)
T ss_pred HHHH
Confidence 5443
No 200
>PRK11462 putative transporter; Provisional
Probab=98.97 E-value=1.7e-08 Score=78.49 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=104.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHH-HHHHHHHHhhhhhhccch------hHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVSIL-IGGVAFLAGSALGVCAFN------IYMLIFGR 76 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~ 76 (172)
.+..|+++...|.+..+.-+.-.+..|+.|+++|| +||||..+ ++....+++.+++...++ ...+.+.-
T Consensus 37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY 116 (460)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 35678999999999998889999999999999996 78876544 555666666554443321 33455556
Q ss_pred HHHhhhhhhhccchhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-h-hcCC---CCcchHHHHHhhhHHHHHH
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKIK---GGWGWRISLAMAAAPASIL 150 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~~---~~~~w~~~~~~~~~~~~~~ 150 (172)
.+..++.........++..|..+ +|+|.+..+....+..+|..+++.+.. + .... +..+|+....+.+++.++.
T Consensus 117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~ 196 (460)
T PRK11462 117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM 196 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 66788888888899999999987 688999999988888888777766654 2 1221 1236777776666655544
Q ss_pred HHh
Q 041620 151 TIG 153 (172)
Q Consensus 151 ~~~ 153 (172)
...
T Consensus 197 ~~i 199 (460)
T PRK11462 197 LAF 199 (460)
T ss_pred HHH
Confidence 433
No 201
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.97 E-value=3.4e-08 Score=75.00 Aligned_cols=117 Identities=13% Similarity=-0.000 Sum_probs=89.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH-Hhhhhhhc--cchhHHHHHHHHHHhhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFL-AGSALGVC--AFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~g~~~~~ 85 (172)
+.+|.++.+.++......++..+++++.+++.||++++........... +....... ..+.+.+....++.|++.+.
T Consensus 236 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 315 (394)
T PRK11652 236 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGM 315 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3478899999998888888999999999999999984433322222222 22122221 24566677788899999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
..+....+..|..| +++++..++.+....+|..+++.+++
T Consensus 316 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 316 LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999886 67899999999999999999999987
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.95 E-value=1.6e-08 Score=78.92 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhch-----hHHH--HHHHHHHHHhhhhhhc---------cchhHHHHHHHHHHhh
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGR-----KVSI--LIGGVAFLAGSALGVC---------AFNIYMLIFGRLLLGV 81 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr-----~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~ 81 (172)
.+++.+.+.+..++.+++..++..|.+| +... .++.++.+++.....+ ..|++++++..++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 5677777777777777775544333333 3333 6677777777666553 3688999999999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
|.....+....++.|..|++.|++.++++.....+|..+++.+.. ...+..+|...|...++..++..++...
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLAT--FGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876 2223346777776666665555444433
No 203
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.92 E-value=2.3e-08 Score=78.49 Aligned_cols=134 Identities=11% Similarity=-0.020 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhhhhhhchhHHHHHHHHHHHHhhhhhhccch---------hHHHHHHHHHHhhhhh
Q 041620 18 LTTFISSLYITGILASLIA----SSVTRALGRKVSILIGGVAFLAGSALGVCAFN---------IYMLIFGRLLLGVGIG 84 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~----g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~ 84 (172)
.++..+.+.+..++..++. +++.||.++.+.+.++.++.+++.+......+ .++.+...++.|+|..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4444555555555555555 66666666667888888888888877655533 4678889999999999
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh--cC-C----CCcchHHHHHhhhHHHHHHH
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ--KI-K----GGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~--~~-~----~~~~w~~~~~~~~~~~~~~~ 151 (172)
...+....++.+..|++.|++.+|++.....+|..++..+.. .. .. . ...+....|...++..++..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988777777777766653 11 00 0 01135677766666555443
No 204
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.91 E-value=2.7e-08 Score=75.39 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=96.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc------chhH--HHHHHHHHHh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA------FNIY--MLIFGRLLLG 80 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~l~g 80 (172)
+.|+ +.+..-|...++.+.++...+.+-|+.||+|-|...+++..+.+++..+-..+ +.++ ....+..+.+
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa 151 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA 151 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH
Confidence 4455 77778899999999999999999999999999999999999999999876554 2344 6667788888
Q ss_pred hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
..+-.....-.-...-|+++++|..+..+-.++..+|.+++.++..
T Consensus 152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP 197 (480)
T ss_pred HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence 8777666665677788899999999999988887888888877766
No 205
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.90 E-value=1.6e-09 Score=83.45 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=120.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccch
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSV 90 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 90 (172)
.+-.+..-|........+-++.-++.+++.+|+|+-+++..++....+=........|.|+.+..-+++|+..+..+..+
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 33444444545555566778888999999999999999999999998888888888999999999999999999999999
Q ss_pred hhhhhccCCccccccchhhhh-HHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 91 PLYLSEMTTPKYRGTFNIGFQ-LCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 91 ~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
..|++...|++.|.++.++.+ ...++|-.+|.++++ ...+.++-|..|.+.++.+++.++....+.
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG--~~v~~fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGG--FVVERFGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhh--hhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999954 456788889999988 555567888899988888877666554443
No 206
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.6e-08 Score=73.63 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=112.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHhhhhhhccchh-HHHHHHHHHHhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-RKVSILIGGVAFLAGSALGVCAFNI-YMLIFGRLLLGVGIG 84 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~ 84 (172)
+-.|.|+|+++.|++.+...+.+...++....+.+|.. +|+.......++.++...+.+.+.- +.+. .+++|+|.|
T Consensus 234 ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G 311 (395)
T COG2807 234 ILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQG 311 (395)
T ss_pred HHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccc
Confidence 44678999999999999999999999999999999764 6677777777777777776665422 2222 589999999
Q ss_pred hhccchhhhhhccCCccc-cccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 85 FGNQSVPLYLSEMTTPKY-RGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
..++...+++.+..++.+ -++-.++.+...++=..++|.+.+ +....+ +|+...+......+...+.-+..-+
T Consensus 312 ~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 312 GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGLRAGR 386 (395)
T ss_pred hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHhhcch
Confidence 999999999998876544 455567778888888889999988 443333 6888887766666655554443333
No 207
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.86 E-value=5e-08 Score=76.36 Aligned_cols=137 Identities=12% Similarity=0.029 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHH-------HHHHHHHHHHhhhhh-----hc-----cchhHHHHHHHHHHhh
Q 041620 19 TTFISSLYITGILASLIASSVTRALGRKVS-------ILIGGVAFLAGSALG-----VC-----AFNIYMLIFGRLLLGV 81 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~-------~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~l~g~ 81 (172)
.++.+.+.+..++.+++.+++.||.++|+. +.++.++.+++.+.. .. ..+.+++...-++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 344555566777889999999999998863 666666666554321 11 1356777788999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCC-------CcchHHHHHhhhHHHHHHHHh
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG-------GWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~-------~~~w~~~~~~~~~~~~~~~~~ 153 (172)
|.+...+....++.+..|++.++.++++++....+|..++..++. .....+ ...+.+.|...++..++..++
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~ 471 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV 471 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988875 211010 112455666656555544444
Q ss_pred hh
Q 041620 154 AS 155 (172)
Q Consensus 154 ~~ 155 (172)
.+
T Consensus 472 ~~ 473 (489)
T PRK10207 472 MA 473 (489)
T ss_pred HH
Confidence 33
No 208
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.83 E-value=9.4e-09 Score=77.03 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc--cc--hhHHHHHHHHHHhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC--AF--NIYMLIFGRLLLGVGI 83 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~g~~~ 83 (172)
++.+|.++.+.+.......+...++.++.|+++||+|||+.+..+......+...... .+ +.+.......+.+++.
T Consensus 253 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (366)
T TIGR00886 253 KDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFS 332 (366)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999999988877776655555444332 22 5555555555555555
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHH
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIG 117 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 117 (172)
+...+.......|..| ++|++.+|+.+...++|
T Consensus 333 g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 333 GAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 6556667777778776 68999999987766554
No 209
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.81 E-value=3.5e-08 Score=76.35 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhh--hhhhccchhhhhhccCCcc
Q 041620 24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVG--IGFGNQSVPLYLSEMTTPK 101 (172)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~~~~~ 101 (172)
...+...+.++..|.++||+|||..+....+...+..+...+.. |++++ +.++. .....+...++++|...++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 44677788999999999999999999999988888776666555 33333 44432 3345777889999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 102 YRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
+|....++.+.....+..++|.+++ ......|.-..+.+..+..++..+...+..+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~--~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~ 200 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGG--YLVKFLGIALVFLIAAASGILSLLYMLLFLP 200 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhcCchHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999988 3223356777888877776666555444443
No 210
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.80 E-value=8.5e-08 Score=73.51 Aligned_cols=131 Identities=8% Similarity=-0.084 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
+.+....+...+....+..+|.++.+++.||+++|+++.......++.+++....++... .....+.|++.+..+|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~ 343 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY 343 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence 344444455566666788899999999999999999998888888888777777666443 5667788888888899999
Q ss_pred hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCC--Cc-chHHHHHhhhH
Q 041620 92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKG--GW-GWRISLAMAAA 145 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~--~~-~w~~~~~~~~~ 145 (172)
....+..+++.+.....+... .+|+.+.|.+.+ +....+ +. +.+..|++...
T Consensus 344 sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 344 GIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL 399 (410)
T ss_pred HHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence 999999986665434444333 389999999988 432110 11 36677766433
No 211
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.80 E-value=7.9e-10 Score=87.08 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=3.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----c--------------
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----F-------------- 67 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~-------------- 67 (172)
.++++++++.++.|++.+.+-++..+..++..++.+|..|-|.+-++.++.+++++++.+- +
T Consensus 28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence 4789999999999999999999999999999999999888888888888888887665421 0
Q ss_pred --------------------------------hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHH
Q 041620 68 --------------------------------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAA 115 (172)
Q Consensus 68 --------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 115 (172)
-+..++++.++.|+|....++...+|+-|..++++-+...|+.+....
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~ 187 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI 187 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence 124567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hhcC-CC--------------Cc----chHHHHHhhhHHHHHHHHhhhhhc
Q 041620 116 IGLLSANLLNC-TQKI-KG--------------GW----GWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 116 ~g~~~~~~~~~-~~~~-~~--------------~~----~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
+|.++|-++++ +... .| +. .|..-|++.+...++..+..+.++
T Consensus 188 lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 188 LGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99988888887 3221 10 01 266677777777666666655555
No 212
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.78 E-value=7.8e-08 Score=63.75 Aligned_cols=114 Identities=24% Similarity=0.203 Sum_probs=91.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
+.++..--...++......+++++.+.+.+++|.|+.++++.+...+-.+.. +-++.+.++.+..+.|++.+..++...
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 3444333344566667778888999999999999999999998887654433 456778889999999999999999999
Q ss_pred hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.++.+..++++|++-.+++-.....+..+|.++..
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877777777777777654
No 213
>PRK09848 glucuronide transporter; Provisional
Probab=98.77 E-value=1.7e-07 Score=72.46 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=80.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh----chhHHH-HHHHHHHHHhhhhhh-----ccc--hhHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL----GRKVSI-LIGGVAFLAGSALGV-----CAF--NIYMLIFG 75 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----gr~~~~-~~~~~~~~~~~~~~~-----~~~--~~~~~~~~ 75 (172)
++..|+++.+.|.+.+...+...+..++.|+++||. ||||.. ..+.+...+...... ... ..+...+.
T Consensus 36 ~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (448)
T PRK09848 36 TDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLT 115 (448)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHH
Confidence 456789999999999999999999999999999996 777654 444443433333221 111 22334445
Q ss_pred HHHHhhhhhhhccchhhhhhccCCc-cccccchhhhhHHH-----HHHHHHHHHHHh
Q 041620 76 RLLLGVGIGFGNQSVPLYLSEMTTP-KYRGTFNIGFQLCA-----AIGLLSANLLNC 126 (172)
Q Consensus 76 ~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~-----~~g~~~~~~~~~ 126 (172)
..+.+++.+...+...++..|..++ ++|.+..+.-..+. .++..++|.+..
T Consensus 116 ~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 116 YMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred HHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887877654 67887766654432 345555666654
No 214
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.77 E-value=5.5e-07 Score=67.82 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=121.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTR-ALGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~ 82 (172)
-.+.+|++..+...++.....|..++-...|++.. |.++|+...+++...+++...... ..+.+.+....++.|++
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 34678999999999999999999999999998887 678888888888888777655443 36788999999999999
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc----CC---CCcchHHHHHhhhHHHHHHHHh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK----IK---GGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~----~~---~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
.|.......+.+.+..++++.|..+|.+.....++..++..+++ +.. .. ...+|...|.+.++..++...+
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888887 321 11 3346888888887776655543
No 215
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.75 E-value=2.4e-07 Score=71.32 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=113.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHH-HHHHHHHHHHhhhhhhccc------hhHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVS-ILIGGVAFLAGSALGVCAF------NIYMLIFGR 76 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 76 (172)
.+..|+++...|.+..+.=+--.+..|+.|.++|| +||+|. ++.+.+..++.+.++..++ +.....+.-
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 46788999999988888888888999999999995 786654 5566677777766666554 345566778
Q ss_pred HHHhhhhhhhccchhhhhhccCC-ccccccchhhhhHHHHHHHHHHHHHHh-h-hcCCC---CcchHHHHHhhhHHHHHH
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTT-PKYRGTFNIGFQLCAAIGLLSANLLNC-T-QKIKG---GWGWRISLAMAAAPASIL 150 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~-~-~~~~~---~~~w~~~~~~~~~~~~~~ 150 (172)
.+.++++...+.+..++..|+.+ +++|.+..+.-+.+.++|..+...+.. + ....+ ..||+....+.++...+.
T Consensus 120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 88899999999999999999986 678999999988888888766655554 2 12221 457888887777776666
Q ss_pred HHhhhhhccc
Q 041620 151 TIGASDWWYR 160 (172)
Q Consensus 151 ~~~~~~~~~~ 160 (172)
.+..++..++
T Consensus 200 ~l~~~~~v~E 209 (467)
T COG2211 200 LLFCFFNVKE 209 (467)
T ss_pred HHHHHHHhhc
Confidence 6555544433
No 216
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.75 E-value=3.7e-08 Score=72.77 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=75.0
Q ss_pred ccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCC--C---------
Q 041620 65 CAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIK--G--------- 132 (172)
Q Consensus 65 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~--~--------- 132 (172)
..++++.+++..++.|.|.+..++..+.++++..|+|++.+.+++.+.++++|..++|.+++ +.... +
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999998 43221 1
Q ss_pred --CcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 133 --GWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 133 --~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
...|+++|++.+....+..+...+.
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~ 112 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFL 112 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1368999986655544444433333
No 217
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.72 E-value=1.1e-07 Score=72.30 Aligned_cols=144 Identities=20% Similarity=0.159 Sum_probs=81.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH--hhhhh-hcc----chhH-HHHHHHHHHh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLA--GSALG-VCA----FNIY-MLIFGRLLLG 80 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~--~~~~~-~~~----~~~~-~~~~~~~l~g 80 (172)
++.|+|.+++|.+.+...+...+.+|+.|.++||.|.||-++.......+ +.+.. .+. .|.+ ..++.....|
T Consensus 36 ~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~ 115 (412)
T PF01306_consen 36 QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLG 115 (412)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTT
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999977665544433222 22111 111 2332 2223333344
Q ss_pred hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
+......+..-+++.+.. ++.+.-.|=.-...++|.+++..+++ +.. .+-+..|++....+++..++.....
T Consensus 116 ~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~----i~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 116 LVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN----INPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp TTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee----eCccHHHHHHHHHHHHHHHHHHHcC
Confidence 444444444444443332 23344455566777888888888888 432 2345667765555544444433333
No 218
>PRK11462 putative transporter; Provisional
Probab=98.71 E-value=3.9e-07 Score=70.92 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhhccchhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFGNQSVPLY 93 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~ 93 (172)
+..+.+.....++.+++.+++++++||+|+|+.+..+.....+......+. ++.+.+.+..++.|++.+...+....+
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778889999999999999999988775554443333332222 233344455566787777666666677
Q ss_pred hhccCCc-----cccc--cchhhhhHHHHHHHHHHHHHHh
Q 041620 94 LSEMTTP-----KYRG--TFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 94 ~~~~~~~-----~~r~--~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
++|..+. .+|. ...+.......+|..+++.+.+
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777652 1333 3345566777788888887776
No 219
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.69 E-value=1.4e-06 Score=67.99 Aligned_cols=144 Identities=18% Similarity=0.121 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHH-HHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhhccchhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIG-GVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFGNQSVPL 92 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~ 92 (172)
+..+...++..+...+..|+.|.++|+-++||.++.. ..+..+++..+.+. ++++...+..++..++.+......++
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888899999999999999877655544 45555566655553 34555555666667788888999999
Q ss_pred hhhccCCcccc--------------------------ccchhhhhHHHHHHHHHHHHHHh-h-hcCCC----CcchHHHH
Q 041620 93 YLSEMTTPKYR--------------------------GTFNIGFQLCAAIGLLSANLLNC-T-QKIKG----GWGWRISL 140 (172)
Q Consensus 93 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~-~-~~~~~----~~~w~~~~ 140 (172)
++.|..+++++ ++..+.-....++|+.+.-.+.. + ....+ ..+.|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 88888877777788777666554 2 12111 23467777
Q ss_pred HhhhHHHHHHHHhhhhhcc
Q 041620 141 AMAAAPASILTIGASDWWY 159 (172)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ 159 (172)
.+.++-.++..+..++..+
T Consensus 230 ~~~a~ww~vfsiP~~~~~~ 248 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLP 248 (477)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 7777666555554444443
No 220
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.8e-07 Score=69.12 Aligned_cols=137 Identities=9% Similarity=0.059 Sum_probs=107.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS 89 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 89 (172)
..|.++++.....+.+..+..+|.+...++..|+...|.+.+..++..+.++...+.++.+ .....++.|+..+..+|.
T Consensus 266 ~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPT 344 (422)
T COG0738 266 LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPT 344 (422)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHH
Confidence 3788999999999999999999999999999999999999999999888888888888844 345677889999999999
Q ss_pred hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
..+...+..| ++-... |..-....+|+++.|.+.+ ...|..+-+..+.+...+|.+-+
T Consensus 345 Ifslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G--~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 345 IFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQG--VIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHhccC-cccccc-ceeeeeheecchHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999998 443333 3333445678888899888 55566666666664444444433
No 221
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.67 E-value=7.9e-07 Score=67.00 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHH-HHHHHHHHHHhhhhhhc-----cc-------hhH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALG-----RKVS-ILIGGVAFLAGSALGVC-----AF-------NIY 70 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----r~~~-~~~~~~~~~~~~~~~~~-----~~-------~~~ 70 (172)
.|++++....+.+.+...+.. ...+..|+.+|+.+ ||.. +..+......+..+..+ .+ +.+
T Consensus 8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 456777777777666655544 46899999999988 7744 45555555554444332 23 222
Q ss_pred ----HHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 71 ----MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 71 ----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
...+...+.|+|.+...+...++++|..|+|+|+++.++......+|.+++..+.+
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g 146 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFG 146 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 23345566799999999999999999999999999999988888899999988887
No 222
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.67 E-value=6.5e-07 Score=69.69 Aligned_cols=141 Identities=15% Similarity=-0.017 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHhhhhhhccch---------------------hHHHHHHH
Q 041620 19 TTFISSLYITGILASLIASSVTRALG-RKVSILIGGVAFLAGSALGVCAFN---------------------IYMLIFGR 76 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~g-r~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 76 (172)
.+....+.+...+.+++..++.+|+| ||++...+.++.+++.....+.++ .+..++..
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 34455555666688888999999999 477778888787777666654332 36677888
Q ss_pred HHHhhhhhhhccchhhhhhccCCcc--ccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTTPK--YRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
.+.|+..+..++.-++++++..+++ +.|..+|+.|.+..+.+.+..+..+ .....+. +-.+.+.+.++..++..+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~gv~~~~aa~~ 466 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVGAVAAFVSGLL 466 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHHHHHHHHHHHH
Confidence 8999999999999999999999954 4599999999999999988887666 3333332 3456777778877777776
Q ss_pred hhhhccc
Q 041620 154 ASDWWYR 160 (172)
Q Consensus 154 ~~~~~~~ 160 (172)
..+..||
T Consensus 467 ~~~~~~~ 473 (477)
T TIGR01301 467 ALILLPR 473 (477)
T ss_pred HHHhCCC
Confidence 6665554
No 223
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.5e-06 Score=67.00 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=94.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc--chhHHHHHHHHHHhhhhhhhcc
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA--FNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
.+.++............+.+++.++..++.+|+|+|+++..+.++.+++.++..+. ++.++.++..++.+++.+..++
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 45556666677777778888889999999999999999999999999999888776 4788888899999999999999
Q ss_pred chhhhhhccCCcc-------ccccchhhhhHHHHHHHHHHHHHHh
Q 041620 89 SVPLYLSEMTTPK-------YRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 89 ~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
...++++|..+-+ .-|...+...++.-+|..++..+.+
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887522 2245566677777778887776665
No 224
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=6.5e-08 Score=72.41 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALG--RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLY 93 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 93 (172)
-+.|....-..+.+.+++.+.|.++||++ |-.....+.+...+.+....+++++..+++-++..+++.+...+.....
T Consensus 306 w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~ 385 (464)
T KOG3764|consen 306 WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPT 385 (464)
T ss_pred cceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence 35565556667889999999999999999 5445555566666777778889999999999999999888887777777
Q ss_pred hhccCCccc------cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 94 LSEMTTPKY------RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 94 ~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..+..+.++ -|...++...++.+|..++|.+++ ...+..|++|...+.++..++-..+..
T Consensus 386 l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg--~iv~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 386 LGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGG--SLVEAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred hHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccc--hheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 777766443 357788889999999999999999 666778899988887777766544433
No 225
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.59 E-value=4.4e-07 Score=70.09 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=107.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL-----GRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRL 77 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 77 (172)
.++++|+++++.....+...+.. ...++.|.++|-+ .||+-++++.++..++...+... .+.....+..+
T Consensus 16 l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~ 94 (433)
T PF03092_consen 16 LKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLF 94 (433)
T ss_pred HHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHH
Confidence 46789999999887766655443 4688899999976 36666777777775555544432 35666677778
Q ss_pred HHhhhhhhhccchhhhhhccCC--ccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 78 LLGVGIGFGNQSVPLYLSEMTT--PKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 78 l~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
+..+|........-+...|... ++.|+...+.......+|+.++..+.+ ...+..+++..|.+.++...+..+...
T Consensus 95 la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G--~l~~~~~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 95 LASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSG--PLLDSFGPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh--hhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence 8899999999999999999974 333677778888888899999988888 333445677788777666665554444
Q ss_pred hhcc
Q 041620 156 DWWY 159 (172)
Q Consensus 156 ~~~~ 159 (172)
+..+
T Consensus 173 ~~~~ 176 (433)
T PF03092_consen 173 FLLE 176 (433)
T ss_pred Hhhh
Confidence 4443
No 226
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.57 E-value=6.8e-07 Score=69.46 Aligned_cols=146 Identities=16% Similarity=0.043 Sum_probs=93.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch---------hHHHHHHHHHHHHhhhhhhccch-hHHHHHHH
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGR---------KVSILIGGVAFLAGSALGVCAFN-IYMLIFGR 76 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 76 (172)
.++.+|+|-.+.|+..++..+.+.+..+++|+++||.-+ |..-.++....++......+.++ .....+..
T Consensus 285 ~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~ 364 (466)
T KOG2532|consen 285 LKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVIL 364 (466)
T ss_pred HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHH
Confidence 346689999999999999999999999999999998755 22233334444444444555442 11111111
Q ss_pred HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
+..+.+..+........-.....+++-+..+++.+....+.+.++|.+.+ +..-.+...|+..|++.++..++..+
T Consensus 365 l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i 441 (466)
T KOG2532|consen 365 LTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI 441 (466)
T ss_pred HHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence 22222222222222222222214577789999999999999999999988 43211345799999998887766554
No 227
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.56 E-value=2.1e-06 Score=65.96 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=75.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-----ccchhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-----CAFNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~ 82 (172)
++.+|.++.+.++.......+..+++.+.+++.+|..+++.......+..++..... ..++.+...+..++.++|
T Consensus 246 ~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G 325 (413)
T PRK15403 246 IDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFG 325 (413)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 456789999999988888888888888888876554444433222222222221111 123343456677888888
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+...+......- .-++..+|++.++.+.....+...++..++
T Consensus 326 ~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g 368 (413)
T PRK15403 326 IGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGR 368 (413)
T ss_pred HHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776664332 222334799999988888777778877776
No 228
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.53 E-value=4.5e-08 Score=74.49 Aligned_cols=130 Identities=12% Similarity=-0.026 Sum_probs=97.2
Q ss_pred HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccch-h---HHHHH-HHHHHhhhhhhhccchhhhhhccCCcc
Q 041620 27 ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFN-I---YMLIF-GRLLLGVGIGFGNQSVPLYLSEMTTPK 101 (172)
Q Consensus 27 ~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~ 101 (172)
.+.+.|..+..++.|+.|||+..+.+.+++.+..+..+...| . ..+.+ ..+.+=++.-+.......+.+|.+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 455568888999999999999999999999988887776544 1 11112 222222333344667788899999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhcCCC-----CcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 102 YRGTFNIGFQLCAAIGLLSANLLNCTQKIKG-----GWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.|++..++.....-.|++++..... ...+ ..+.++.+++.+....+..+..++++
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~--~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFL--YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhh--HhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 9999999999999999999888755 3333 56789999998888877777666665
No 229
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.52 E-value=8.2e-10 Score=85.18 Aligned_cols=131 Identities=18% Similarity=-0.006 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh--c--c-ch----hHHHHHHHHHHhhhhh-hhccchhhh
Q 041620 24 SLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV--C--A-FN----IYMLIFGRLLLGVGIG-FGNQSVPLY 93 (172)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~--~--~-~~----~~~~~~~~~l~g~~~~-~~~~~~~~~ 93 (172)
...+...++.+...++.||+|||+.++.+....++...... . . ++ -...++...+...+.+ ...+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~ 373 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY 373 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence 33455667777888999999999999999888877776653 1 1 22 1112222222222222 335666788
Q ss_pred hhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 94 LSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 94 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
..|.+|++.|.++.++......++..+++.+.. ...+..+-...+.+.+..+++..+..++
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFP--YLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred ccccccccccccccccccccccccccccccccc--cccccccccccchhhHHHHHHHHhheeE
Confidence 999999999999999988888888888887754 3333333123444444444444443333
No 230
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.44 E-value=6.5e-07 Score=52.88 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=61.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHH
Q 041620 5 TKVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYML 72 (172)
Q Consensus 5 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (172)
|..+++.++|.++.+++.+.+.+|+.+|++...++.++..+++.+..+.+...+..+.+.+.++.+.+
T Consensus 16 P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 16 PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 44678899999999999999999999999999999999998999999999999999999988887654
No 231
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=4.4e-07 Score=73.00 Aligned_cols=154 Identities=19% Similarity=0.104 Sum_probs=125.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-------------------
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA------------------- 66 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------------------- 66 (172)
.+++.++++.++.|++.+.+-+++.+...+..+...|.-|-+.+-++++++++++++..+-
T Consensus 122 tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~ 201 (735)
T KOG3626|consen 122 TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVE 201 (735)
T ss_pred hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcccc
Confidence 4678899999999999999999999999999999999999998888888888777665431
Q ss_pred -c-----------------------------h--hH-HHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHH
Q 041620 67 -F-----------------------------N--IY-MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLC 113 (172)
Q Consensus 67 -~-----------------------------~--~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 113 (172)
+ + ++ +++++.++.|+|....++...+|+-|...+++-....++.+..
T Consensus 202 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~ 281 (735)
T KOG3626|consen 202 NPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSM 281 (735)
T ss_pred CCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHH
Confidence 0 0 22 5667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hhcC-CCC--------------c-chHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 114 AAIGLLSANLLNC-TQKI-KGG--------------W-GWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 114 ~~~g~~~~~~~~~-~~~~-~~~--------------~-~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
..+|-++|-++++ +..+ .+. . .|..-|++.+.+.++..+..+++++
T Consensus 282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999988887 3221 111 0 3777888888888877777777663
No 232
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.34 E-value=5.6e-06 Score=65.35 Aligned_cols=103 Identities=13% Similarity=-0.043 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccc----h--------hHHHHHH-HHHHhhhhhh
Q 041620 19 TTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAF----N--------IYMLIFG-RLLLGVGIGF 85 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~-~~l~g~~~~~ 85 (172)
.+......+...++..+..++.||+|||+.++.+...+.++....+... + .+..++. .+........
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g 411 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG 411 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 4445555667778888889999999999999999999988887665431 1 1111121 2222222223
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSA 121 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 121 (172)
..+....+.+|.+|.+.|+++.++..........+.
T Consensus 412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v 447 (513)
T KOG0254|consen 412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI 447 (513)
T ss_pred cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH
Confidence 345555788999999999999999666555544433
No 233
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.32 E-value=4e-08 Score=70.82 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=96.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhc---cchhHHHHHHHHHHhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVC---AFNIYMLIFGRLLLGV 81 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~ 81 (172)
+.+.+.+++.++..++-+++..-+++-+++.|++.|| +|-|.-.++-+....++.+++.. .+.+|++...|++.|+
T Consensus 69 ~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGI 148 (459)
T KOG4686|consen 69 DFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGI 148 (459)
T ss_pred hhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeecc
Confidence 3456777888888899999999999999999999996 67776666666666666665543 5889999999999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHH
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 120 (172)
|.-..-.+.+.+..-++..|+-+.++|+..+...+|+.+
T Consensus 149 GgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 149 GGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV 187 (459)
T ss_pred CchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence 998888999999999999999999999988888887653
No 234
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.27 E-value=5.7e-05 Score=57.58 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=115.1
Q ss_pred CCCCChhHHHH-HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 10 YSKFDSQLLTT-FISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 10 ~~~~s~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+.|++++|..- +.....-.+....++...++|..+.|++++++.+...+...+..+.++...+-+..+..|+..+. ..
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-ev 112 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EV 112 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HH
Confidence 36888877763 44444567778888999999999999999999999999988888899999999999999998876 66
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
+..+++-...|+++-.++.+.......+|..++.+++. +.. .+..+++....+......+..+..++++
T Consensus 113 ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs-~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 113 AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS-FGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77788888889888888888888888888888877776 322 2334677777776665555665556666
No 235
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=98.26 E-value=2.6e-06 Score=64.50 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhhhhhcc--c-------hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccc---cccchhhhhHHH
Q 041620 47 VSILIGGVAFLAGSALGVCA--F-------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKY---RGTFNIGFQLCA 114 (172)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~ 114 (172)
|++.++.++..++..+..++ + +.+.++++..+.++|.|..-+....+.+|.+++++ |.+..+.++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56778888888887774433 1 23678899999999999999999999999998763 455677789999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 115 AIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 115 ~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
++|..+++.+.. ...++.+|.+.|.+.++..++..+....
T Consensus 82 n~G~~~~~~~~~--~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVP--YIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCC--HHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccch--hhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 999999988876 4446779999999988877766554333
No 236
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.25 E-value=4.6e-06 Score=48.65 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=43.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAF 56 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~ 56 (172)
.++.|+|+.++|.+.++..+...++++++|.++||+++++.++.....+
T Consensus 27 ~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 27 LKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3568999999999999999999999999999999999988877665443
No 237
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.17 E-value=1e-05 Score=60.63 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=104.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALG--RKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.+.++.++.|.|-+.+...+.+.+.+....+..||.. -+-.+..+..++.-..+.....+....+.....+-.+....
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 4779999999999999988999999988888888877 66667777777766667777778888888899999998888
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.-+....++....|+++||+.+|+..+...++-++||++++
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence 88889999999999999999999999999999999999997
No 238
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.13 E-value=1.9e-05 Score=61.85 Aligned_cols=133 Identities=10% Similarity=-0.019 Sum_probs=84.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHHHHHHHHhh-hhhhccchhHHHHHHHHHHhhhhh
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVSILIGGVAFLAGS-ALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
..|.|..+...+.+.+.++.+++.+++|+++|| +.+|........+..+.. ......++.............+..
T Consensus 303 ~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~ 382 (495)
T KOG2533|consen 303 NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLI 382 (495)
T ss_pred CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhH
Confidence 456889999999999999999999999999999 667766666655554433 333333334444444444445555
Q ss_pred hhccchhhhhhccCCcccc-ccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhh
Q 041620 85 FGNQSVPLYLSEMTTPKYR-GTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMA 143 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~ 143 (172)
...+......++....+.| -+..+.+..+.+.+..++|.+-. ......+.|...|...
T Consensus 383 ~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~-~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 383 ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR-SLDAPRYGWGAVFYML 441 (495)
T ss_pred HHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc-cccCcchhhhhHHHHH
Confidence 5666677777777765554 44455566666666666655532 1223335677777433
No 239
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.06 E-value=6.5e-05 Score=59.37 Aligned_cols=99 Identities=18% Similarity=0.076 Sum_probs=80.1
Q ss_pred HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhH---HHHHHHHHHhhhhhhhccchhhhhhccCCccccc
Q 041620 28 TGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIY---MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRG 104 (172)
Q Consensus 28 ~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 104 (172)
....+....+...|++|||.....+.++..++++......+.. ...+...+..++.+..+.....+.+|.+|+..|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 4455666678999999999999999999999998888764322 3445555555566666667799999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHh
Q 041620 105 TFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 105 ~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+.+..+....+|.+++|.+..
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 240
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.01 E-value=9.2e-05 Score=57.68 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=104.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhh-hhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIAS-SVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
.+..+++++++.+...+.......+++.+.. .+...+|-|+++..+++.-.+..+..++.++.|+.+....+.++.. .
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-~ 346 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-I 346 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-c
Confidence 3567899999999988888888888877666 8888899999999999999999999999999999988888877765 4
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
..+...+..+.+.+++++|+..++......+...++|.+-+
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence 58888999999999999999999999999999999988876
No 241
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.94 E-value=0.0001 Score=57.08 Aligned_cols=149 Identities=8% Similarity=-0.031 Sum_probs=102.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-cc---------chhHHHHHHHHHHh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-CA---------FNIYMLIFGRLLLG 80 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~l~g 80 (172)
.|+|++..+.+..+..++..++..+..+..-++.-|+++....++.++..+.-. +. ++.+-.+.-.++..
T Consensus 250 p~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~ 329 (433)
T PF03092_consen 250 PHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE 329 (433)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence 348999999999888899999999998888888888888888877766554322 11 22233333456666
Q ss_pred hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCC-----CCcchHHHHHhhhHHHHHHHHhh
Q 041620 81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIK-----GGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
+.....+-+...+++|.+|+..-++..++.....++|..++..++. +.... +..+..+..++..+..++...+.
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll 409 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL 409 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 6666667778889999999999999999998888888888888876 32211 11223344445455554455544
Q ss_pred hhhcc
Q 041620 155 SDWWY 159 (172)
Q Consensus 155 ~~~~~ 159 (172)
.+.++
T Consensus 410 ~lLp~ 414 (433)
T PF03092_consen 410 FLLPP 414 (433)
T ss_pred HHcCC
Confidence 45555
No 242
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.91 E-value=0.00029 Score=55.42 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhch--h----HH-HHHHHHHHHHhhhhhhcc---------chhHHHHHHHHHHhh
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGR--K----VS-ILIGGVAFLAGSALGVCA---------FNIYMLIFGRLLLGV 81 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr--~----~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~ 81 (172)
..|..+.+.+.-++.+|+.+++=.|..| | +. +.+++++.+++.+.+... .+.++++..-++.++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 4556677777777778877777666522 1 11 556666666666554321 256778888999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHH-HHHHHHHHHHHHh
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLC-AAIGLLSANLLNC 126 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~ 126 (172)
|.-...|.....+++..|++.|++.+|.+... ..+|..++..++.
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998663 3677777766665
No 243
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.90 E-value=0.00032 Score=53.42 Aligned_cols=142 Identities=13% Similarity=-0.019 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH-HHHHHhhhhhhccc---hhHHHHHHHHHHhhhhhhhccch
Q 041620 15 SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGG-VAFLAGSALGVCAF---NIYMLIFGRLLLGVGIGFGNQSV 90 (172)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~ 90 (172)
.+..+...++..+-..+-+|+.|.++|+.|+||..+... .+..++.....+.+ +.+...+...+..++....+...
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 355566677777888889999999999999776655544 44444444555543 34555566777788888889999
Q ss_pred hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---------------CCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---------------IKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---------------~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
++++.+..++++-++..++-.....+|+.+.-.... ... ..+...-|..+.+.++-.++..+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 999999999998888888855555666655443321 000 0133456777777666555555444
Q ss_pred hh
Q 041620 155 SD 156 (172)
Q Consensus 155 ~~ 156 (172)
+.
T Consensus 217 ~~ 218 (438)
T COG2270 217 IL 218 (438)
T ss_pred Hh
Confidence 43
No 244
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.89 E-value=0.00081 Score=52.57 Aligned_cols=113 Identities=13% Similarity=0.037 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHHHHHHHH-HHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-----c--------------------
Q 041620 14 DSQLLTTFISSLYITGILA-SLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-----F-------------------- 67 (172)
Q Consensus 14 s~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-----~-------------------- 67 (172)
+.+.+.++-+...+...+. .++.+++++|++|++++-.....+.....++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467888888777666555 8999999999999998877665555544443332 1
Q ss_pred ------hhHHHHHHHHHHhhhhhhhcc-chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 68 ------NIYMLIFGRLLLGVGIGFGNQ-SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 68 ------~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+.|...+.-+...+......+ .-..+++|.++.++-.|..++...+.++|..+++.+..
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~ 186 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK 186 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333344444444444 67789999999999999999999999999999998876
No 245
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.71 E-value=0.00019 Score=57.47 Aligned_cols=110 Identities=15% Similarity=-0.018 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhchhH-HHHHHHHHHHHhhhhhhc--cchhHHHHHHHHHHhhhhhhhccchhhh
Q 041620 17 LLTTFISSLYITGILASLIASSVTRALGRKV-SILIGGVAFLAGSALGVC--AFNIYMLIFGRLLLGVGIGFGNQSVPLY 93 (172)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 93 (172)
..++......++..+++.+.|.+..+.+|-| .++++.++..+++-.+.. .+|....+...++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 5677778888899999999999999888654 455666666554444333 2566666788889999999988888888
Q ss_pred hhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 94 LSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 94 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
..-..|+++-+++.++......+|+.++..+..
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888889999999999999999999888877764
No 246
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00091 Score=53.56 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=97.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccc--------------------
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAF-------------------- 67 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~-------------------- 67 (172)
.++|.+...+.-....+.-......+..++++|. +||-+++.++.++..++..+...+.
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 3455555555555555555556677899999997 4899999999888877754333210
Q ss_pred -----hhHHHHHHHHHHhhhhhhhccchhhhhhccCC---cccc-c--cchhhhhHHHHHHHHHHHHHHhhhcCCCCcch
Q 041620 68 -----NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTT---PKYR-G--TFNIGFQLCAAIGLLSANLLNCTQKIKGGWGW 136 (172)
Q Consensus 68 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~r-~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w 136 (172)
....+....-+..+|.|+.-+....+-+|.++ ++++ . ..+..++...+.|..++..+.- +..++.+|
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v--yiq~~~~w 223 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV--YIQDNVGW 223 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH--hhhhcccc
Confidence 11355566677788999999999999999998 3222 2 4455666677777777766643 55567799
Q ss_pred HHHHHhhhHHHHHHHHh
Q 041620 137 RISLAMAAAPASILTIG 153 (172)
Q Consensus 137 ~~~~~~~~~~~~~~~~~ 153 (172)
.+.|.+......+..++
T Consensus 224 ~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 224 KLGFGIPTVLNALAILI 240 (571)
T ss_pred eeeccHHHHHHHHHHHH
Confidence 99998877766555443
No 247
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.62 E-value=0.0004 Score=53.31 Aligned_cols=115 Identities=15% Similarity=0.024 Sum_probs=79.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHhhhhhhc-c---chhHHHHHHHHHHhhhhhhh
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGR-KVSILIGGVAFLAGSALGVC-A---FNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~g~~~~~~ 86 (172)
|.+....|.......+++++++.+.|.+.||.+. |.+++.......++...... . ...+.++..-.+.|++....
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence 3444678888888889999999999999999875 45555555554444222221 1 34455666777888888888
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.|....+..|..-|..-++..|+.+....+-+.+-..+-+
T Consensus 377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~ 416 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMG 416 (480)
T ss_pred CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHH
Confidence 9999999999976666677888876665555544444444
No 248
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.54 E-value=0.0034 Score=48.01 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
+.+.-..+.+.....+-..+..+...++.+|+..+.=+....+++.++.+..+++++.++-+++-.+.+++.|..-...-
T Consensus 55 ~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL 134 (402)
T PF02487_consen 55 DCKSVSTGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFL 134 (402)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHH
Confidence 33444455566666777888888899999998755445666677788888888889999988999999988887655555
Q ss_pred hhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHH
Q 041620 92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILT 151 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~ 151 (172)
.+ ...+++ ...+-+.++.+.++.+|+..-. +.. -..+.|..+.......++..
T Consensus 135 ~l-t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~--~g~s~~~tll~~~~lp~~~~ 188 (402)
T PF02487_consen 135 SL-THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT--LGLSPRTTLLIMLVLPAIFL 188 (402)
T ss_pred HH-HHhcCc----cccccccCCcChhhHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHH
Confidence 54 334543 3466777777778888877655 433 22345666666555544333
No 249
>PTZ00207 hypothetical protein; Provisional
Probab=97.52 E-value=0.00032 Score=56.29 Aligned_cols=133 Identities=12% Similarity=0.014 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh---------hchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchh
Q 041620 21 FISSLYITGILASLIASSVTRA---------LGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~l~d~---------~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
+.+.+.+++.+|.+..|+++.. +.|.-.+.+..+ +.++.+++.+.-+...+.+..++.|++.|..++...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 5677778888888888877722 222222333333 555555555543336788999999999999999999
Q ss_pred hhhhccCCccccccchhhhhHHHHHHHHHH-HHHHh-hhc--C--CC------CcchHHHHHhhhHHHHHHHHhhh
Q 041620 92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLSA-NLLNC-TQK--I--KG------GWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~-~~~--~--~~------~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
..++|.|. |+-|+-..+......+|+.+- ..+.+ +-. . .+ ..=++..|++.+..+....+...
T Consensus 475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 99999998 777777776666666666554 33333 110 0 00 01167888888777777665544
No 250
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.37 E-value=7.9e-05 Score=57.16 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=83.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHHH-HHHHHhhhhhhccchh--------------
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA----LGRKVSILIGG-VAFLAGSALGVCAFNI-------------- 69 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr~~~~~~~~-~~~~~~~~~~~~~~~~-------------- 69 (172)
+..|++....+.+-...-+...+-+|+.|..+|| |||||.++... +...++.++..++.++
T Consensus 60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ 139 (498)
T KOG0637|consen 60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKP 139 (498)
T ss_pred HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccch
Confidence 4566666666666666667778889999999995 88887766654 4445555555554222
Q ss_pred ---HHHHHHHHHHhhhhhhhccchhhhhhccCCcccccc-chhhhhHHHHHHHHHHHHHHh
Q 041620 70 ---YMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGT-FNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 70 ---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~ 126 (172)
..+++..-+.=+.....+..+-+++.|...+++|.+ +++.+..+..+|..++...++
T Consensus 140 rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 140 RAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 223333344445666778889999999998777776 999999999999988887774
No 251
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0025 Score=49.55 Aligned_cols=103 Identities=22% Similarity=0.206 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCcc
Q 041620 22 ISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPK 101 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 101 (172)
.++......+.+++.+.+.|+.|+|..+.++........+.... .|-+-++....+.|+|.+..+.....+++|..++|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 56667788899999999999999999999999888776655443 45677889999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHH
Q 041620 102 YRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 102 ~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
.+.+..++.=.....+..+|..+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999888886555566666665544
No 252
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.21 E-value=0.0084 Score=46.51 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=89.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh---cc---c----hhHHHHHHHHHH
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV---CA---F----NIYMLIFGRLLL 79 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~---~~---~----~~~~~~~~~~l~ 79 (172)
..|.++..+|..-+...+..+.+.+...++.+|+|..|.=+++...-.....++. +. + +...++.+..+.
T Consensus 287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS 366 (432)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999988877776543322222111 11 2 233344444444
Q ss_pred hhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcch
Q 041620 80 GVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGW 136 (172)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w 136 (172)
=+|.=...-...-++.|..|+++||+..+..++..++...+...+.....-+++++|
T Consensus 367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~ 423 (432)
T PF06963_consen 367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGW 423 (432)
T ss_pred HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcCh
Confidence 455555677778889999999999999999999988888877776542233334444
No 253
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.15 E-value=0.005 Score=48.05 Aligned_cols=138 Identities=17% Similarity=0.089 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHhhhhhhcc----------chhHHHHHHHHHHh
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRK-------VSILIGGVAFLAGSALGVCA----------FNIYMLIFGRLLLG 80 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~-------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g 80 (172)
..+..+.+.+.-++.+|+..++-.|.+++ .=+-++..++..+.+..... .+.++++..-++++
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 44556777778888888888888875443 12344444444444433221 36788889999999
Q ss_pred hhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---CCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 81 VGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---IKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
+|.-...+.....+.+..|++-.+..++.+......|..++..++. ... ..+.......|+..+...++..+...
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888877777777666654 110 12223445566666666555544433
No 254
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.03 E-value=0.0056 Score=46.91 Aligned_cols=112 Identities=12% Similarity=-0.009 Sum_probs=80.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH--HHHhhh---hhhccchhHHHHHHHHHHhhhhhh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVA--FLAGSA---LGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
..-.+++.-+....+.+|..++.--...+ |+ |++.+.+.+- ..+..+ ..-+.++.|..++..+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 34446777777888888777664432221 33 3343333322 222222 233457899999999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+......+.|..|+++|..+++....+-..|..++.+++.
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988875
No 255
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.014 Score=45.47 Aligned_cols=104 Identities=20% Similarity=0.252 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh---hchhHHHHHHHHHHHHhhhhhhcc------------------chhHHHHHHHHH
Q 041620 20 TFISSLYITGILASLIASSVTRA---LGRKVSILIGGVAFLAGSALGVCA------------------FNIYMLIFGRLL 78 (172)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~l~d~---~gr~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l 78 (172)
.-......|.+++..+.+.+.+| +||++.+..+..+..+.+++.... ++.....+.-++
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 33344456777777777777764 789999998888877777665442 135577788899
Q ss_pred HhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHH
Q 041620 79 LGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLL 124 (172)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (172)
.|++-...++.....+.+.. +++|..+.+++-.-..++..++-..
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999 6778888887766666666554443
No 256
>PRK03612 spermidine synthase; Provisional
Probab=96.50 E-value=0.15 Score=40.75 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=64.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH---hhhhhhc----cchh-HHHHHHHHHHhhh
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLA---GSALGVC----AFNI-YMLIFGRLLLGVG 82 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~---~~~~~~~----~~~~-~~~~~~~~l~g~~ 82 (172)
+|-+..+.+.+.+.+..|..+|+.+.+++.++--++... .-..+..+ +..+... .... .......++.++.
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888999999999999998887443333221 11111111 1111111 1111 1223344556777
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.|+..|....+..+... ++-+...|-.+....+|+.+|.++.+
T Consensus 124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 77776666655544322 22345566667777777777777766
No 257
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.46 E-value=0.005 Score=48.65 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=47.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHH-HHHHHHhhhhhhcc
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIG-GVAFLAGSALGVCA 66 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~-~~~~~~~~~~~~~~ 66 (172)
-+++|+++.+.|.+...--+..+++.|++|+++||+.+||.++++ .+......++..+.
T Consensus 38 ~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 38 FKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred HHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 367899999999999999999999999999999999877665555 44455555555554
No 258
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.011 Score=45.91 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhc-------hhHHHHHHHHHHHHhhhhh----h-ccchhHHHHHHHHHHh
Q 041620 13 FDSQLLTTFISSLYITGILASLIASSVTRALG-------RKVSILIGGVAFLAGSALG----V-CAFNIYMLIFGRLLLG 80 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-------r~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~l~g 80 (172)
.+.++..++..+...++.+|.+++|.++||+- |.+.--+.+.+.+..++.+ . +..+........+++|
T Consensus 280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g 359 (493)
T KOG1330|consen 280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVG 359 (493)
T ss_pred CccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556666777778899999999999999943 2222222222222222221 1 1233333444555556
Q ss_pred hhhhh-hccchhhhhhccCCccccccchhhhhH-HHHHHHHHHHHHHh
Q 041620 81 VGIGF-GNQSVPLYLSEMTTPKYRGTFNIGFQL-CAAIGLLSANLLNC 126 (172)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~ 126 (172)
..... ..+...-...|..|+++|.++.++-.. ....|..-+|.+.+
T Consensus 360 ~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG 407 (493)
T KOG1330|consen 360 ETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG 407 (493)
T ss_pred HHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence 54433 355667788899999999999999544 44456666664544
No 259
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.0036 Score=45.54 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=68.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+.+++.+.+++.+.....-..++...+.|.++||-|||+.-+.-++...++|+ .-.++++-.+.++|.+-|+..+..++
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFS 143 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFS 143 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHH
Confidence 56778888888877766667778888899999999999986666666655543 34568889999999999999988877
Q ss_pred chhh-hhhccC
Q 041620 89 SVPL-YLSEMT 98 (172)
Q Consensus 89 ~~~~-~~~~~~ 98 (172)
.-.. +++|..
T Consensus 144 aFEsWliaEHn 154 (454)
T KOG4332|consen 144 AFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHhh
Confidence 7554 456655
No 260
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.23 Score=38.22 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=64.3
Q ss_pred HHHhhhhhhh-----hhchhHHHHH------HHHHHHHhhhh------hhccchhHHHHHHHHHHhhhhhhhccchhhhh
Q 041620 32 ASLIASSVTR-----ALGRKVSILI------GGVAFLAGSAL------GVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYL 94 (172)
Q Consensus 32 ~~~~~g~l~d-----~~gr~~~~~~------~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 94 (172)
-.+.+..+.| |+||||.-+. +.++..++... .+-.++........++.-+..+....+.-.+.
T Consensus 79 LKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwA 158 (510)
T KOG3574|consen 79 LKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWA 158 (510)
T ss_pred HHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3457778888 9999986443 33333332211 11123444454566777888888888899999
Q ss_pred hccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620 95 SEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 95 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
-.+..+++-+.+..-...+.+.|.+++..+.
T Consensus 159 LtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 159 LTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 9999999999888888888888887776654
No 261
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.44 Score=36.73 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=73.4
Q ss_pred hhHHHHHHHH-HHHHHHHHHHhhhhhhhhhchhHHHHHHH--HHHHHhhh------hhhccchhHHHHHHHHHHhhhhhh
Q 041620 15 SQLLTTFISS-LYITGILASLIASSVTRALGRKVSILIGG--VAFLAGSA------LGVCAFNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 15 ~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~gr~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~ 85 (172)
+...-..... +++.-.+|.+...++-++=. |+..+... .+..-... ....-++-++.+....++|+..|.
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~-r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPDP-RKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCCC-ceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 3333444445 67888888777766655443 33333222 22222222 112346777888999999999999
Q ss_pred hccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620 86 GNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
..+....+..+..|++++..+..+...+...|-..|..++
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999988887777777777777766653
No 262
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=94.24 E-value=2.3 Score=33.95 Aligned_cols=113 Identities=19% Similarity=0.115 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---------chh--------------
Q 041620 14 DSQLLTTFISSLYI-TGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---------FNI-------------- 69 (172)
Q Consensus 14 s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---------~~~-------------- 69 (172)
+++.+..+-....+ ..++...+..+++||++|++++-.....+.....+.++. ++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56666666665544 556678889999999999998776655444433332221 111
Q ss_pred --------HHHHHHHHHHhhhhhhhcc-chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 70 --------YMLIFGRLLLGVGIGFGNQ-SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 70 --------~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
|...+.-++.-+-.....+ .-..+.+|.++.++-.+..+++..+.++|..+++.+..
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~ 201 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTS 201 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111122222222 34788999999999999999999999999998888876
No 263
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=94.04 E-value=0.53 Score=37.34 Aligned_cols=96 Identities=14% Similarity=0.009 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH--HHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhc
Q 041620 19 TTFISSLYITGILASLIASSVTRALGRKVSILIGG--VAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSE 96 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 96 (172)
|..-++..+.+.+.++..|++-.++.+---+.++. ++-+...+++...+|.|..+++-++.+.......+....-+++
T Consensus 301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~ 380 (511)
T TIGR00806 301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS 380 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677788899999877775533333333 3333334556677999999999999999998888888888888
Q ss_pred cCCccccccchhhhhHHH
Q 041620 97 MTTPKYRGTFNIGFQLCA 114 (172)
Q Consensus 97 ~~~~~~r~~~~~~~~~~~ 114 (172)
....+.-+...|++++..
T Consensus 381 ~L~~~~~aLvFGiNtfvA 398 (511)
T TIGR00806 381 SLSKELCALVFGINTFVA 398 (511)
T ss_pred HhcccceEEEEecHHHHH
Confidence 888888899999977653
No 264
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=93.83 E-value=0.1 Score=42.76 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=42.2
Q ss_pred CCCCCCChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhh
Q 041620 8 SNYSKFDSQLLTTFISSLYI-TGILASLIASSVTRALG--RKVSILIGGVAFLAGS 60 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~ 60 (172)
++.+|.++.+.+++.....+ +.+++.++.|++.||++ .|+.+.++.++..++.
T Consensus 358 ~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 358 ENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 45689999999999887775 67899999999999998 4567776666665554
No 265
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=93.75 E-value=0.079 Score=40.00 Aligned_cols=148 Identities=9% Similarity=-0.009 Sum_probs=97.7
Q ss_pred CCCChhHHHH-HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccc
Q 041620 11 SKFDSQLLTT-FISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQS 89 (172)
Q Consensus 11 ~~~s~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 89 (172)
-++++++..- +.....-...+.-.+.=.+.|....|++++.-.+..........+.++.+..=+.-+..|...+. ..+
T Consensus 36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIA 114 (433)
T KOG3810|consen 36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIA 114 (433)
T ss_pred CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHh
Confidence 3455554431 22222334455556666799999999998888887777777888888988888888888887654 566
Q ss_pred hhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 90 VPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 90 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
.++++-+..|++++.++.+..-...-.|...+..++.+....+..++...=.+......+......+.++
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~ 184 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR 184 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence 7888888899999999999887777777777777665112222234444444444433444444455553
No 266
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=93.44 E-value=2.2 Score=31.64 Aligned_cols=134 Identities=16% Similarity=0.022 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHhhhhhhc----c---chhHHHHHHHHHHhhhhhhhc
Q 041620 17 LLTTFISSLYITGILASLIASSVTRALGRK--VSILIGGVAFLAGSALGVC----A---FNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~--~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~g~~~~~~~ 87 (172)
--|.+.+.+..+..+|+-+..++..|-.+| +.+.+..+..++...+... + .+...-+++..+.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 356778888889999998888888776654 3444444444333322221 1 122233455555667788889
Q ss_pred cchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 88 QSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
|...-+-.+..|++.|.+.+..+-.-.++- .+-.+-....-....+-|..|-++.....+..+
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnif--vClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIF--VCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHh--hhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 999999999999999988887765543332 221221110111122456777766665554433
No 267
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.12 E-value=1.3 Score=34.46 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH--HHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhh
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGG--VAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLS 95 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 95 (172)
=|.+-....+.+.++++..|++..++.+..-+..+. ++.+...+++...+|.|...++-++.+.......+....-++
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA 366 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA 366 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788889999999988887755444443 333444556667789999999988888888777777777788
Q ss_pred ccCCccccccchhhhhHH
Q 041620 96 EMTTPKYRGTFNIGFQLC 113 (172)
Q Consensus 96 ~~~~~~~r~~~~~~~~~~ 113 (172)
.....|.-+...|++.+.
T Consensus 367 ~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 367 KNLSEERYALVFGINTFV 384 (412)
T ss_pred HhccccceeeeeeeHHHH
Confidence 888778888888887654
No 268
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=92.74 E-value=1.1 Score=35.17 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 67 FNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 67 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
++-+..++..++.|+.+|...+....+..+..++++|..+..+...+..+|-..|..++.
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778999999999999999999999999999999888888888888888877754
No 269
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=91.94 E-value=0.092 Score=41.37 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=57.4
Q ss_pred HHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 76 RLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 76 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
-++.|.+.........++-+|...++++++..++++.....+..++|.+.. .....+|.|+.+.+.....++...
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t--~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFST--AIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHh--hhHHhcCccHHHHHHHHHHHHHHH
Confidence 445577776677778899999999999999999999999999999999976 444455777777665554444333
No 270
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=91.65 E-value=0.59 Score=34.98 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=59.0
Q ss_pred HHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 57 LAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+......+.+++|..++..+.-|+-.|..+....--+.+-.++++|..+++....+-..|..++..++.
T Consensus 330 f~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 330 FLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 3334455677899999999999999888888888888888889999999999999999999988888865
No 271
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=91.19 E-value=6.2 Score=31.02 Aligned_cols=30 Identities=17% Similarity=-0.020 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhhhhhhchhHHHHHHHHH
Q 041620 26 YITGILASLIASSVTRALGRKVSILIGGVA 55 (172)
Q Consensus 26 ~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~ 55 (172)
.+..++.++..|.+.||..|.+++..+.+.
T Consensus 48 ~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~ 77 (432)
T PF06963_consen 48 SLSAILFGPWVGRWIDRSPRLKVIRTSLVV 77 (432)
T ss_pred HHHHHHhhHHHHHHHhCCcchhhHHHHHHH
Confidence 356678899999999999999987776544
No 272
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=90.19 E-value=7.7 Score=30.50 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH-HHhhhhhhc----c---chhHHHHHHHHHHhhhhhhhccchhh
Q 041620 21 FISSLYITGILASLIASSVTRALGRKVSILIGGVAF-LAGSALGVC----A---FNIYMLIFGRLLLGVGIGFGNQSVPL 92 (172)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~-~~~~~~~~~----~---~~~~~~~~~~~l~g~~~~~~~~~~~~ 92 (172)
......+...+..+....+..|+..|.=+..+.++. .+......+ . ..++..++..++.|++.+..++....
T Consensus 50 ~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~g 129 (437)
T TIGR00939 50 YTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFG 129 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchh
Confidence 333444555666666667777766421122232221 111111111 1 24566667778889999988888888
Q ss_pred hhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620 93 YLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 93 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
+.+ .+|++. +..+..+.++++.++..+.
T Consensus 130 la~-~fp~~~----~~a~~~G~g~aGv~~s~~~ 157 (437)
T TIGR00939 130 LAG-VFPSTY----SSAVMSGQGLAGVLTSLAM 157 (437)
T ss_pred hcc-cCCHHH----HHHHHhcchhHHHHHHHHH
Confidence 766 556554 3444445555555544443
No 273
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=90.03 E-value=5.6 Score=31.90 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620 73 IFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 73 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
...-+++-+-.+....+.-.+.-.+..+++++.+..-...+.+.|..++..+.
T Consensus 122 t~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF 174 (544)
T PF13000_consen 122 TWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF 174 (544)
T ss_pred HHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence 34444455555666777788888888999998888888888888877776654
No 274
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=89.57 E-value=9.3 Score=30.53 Aligned_cols=114 Identities=16% Similarity=0.045 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc---------ch--------------
Q 041620 13 FDSQLLTTFISSLYI-TGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA---------FN-------------- 68 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---------~~-------------- 68 (172)
.+++.+.++-+...+ +.++..++.++++++..|.+++-..+..+....+++++. ++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 456667777777776 778899999999999999998776665554444443321 11
Q ss_pred ---------hHHHHHHHHHHhhhhhhhcc-chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 69 ---------IYMLIFGRLLLGVGIGFGNQ-SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 69 ---------~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.|...+.-.+.=+-.....+ .-.....|.++.++-.|..++++.+.+++..++..+..
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 02222222222222222222 44567889999999999999999999999988888876
No 275
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=89.25 E-value=2.4 Score=32.12 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=66.2
Q ss_pred HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCc--ccc-
Q 041620 27 ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTP--KYR- 103 (172)
Q Consensus 27 ~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r- 103 (172)
..-+..+.+.+.+.+++|.|+++..+......... .-+-+.+..++....+.|++.+..+..--+|+++.-.. +.|
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~ 147 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRG 147 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhh
Confidence 34456777777999999999999888777655432 22346788888999999999999988888888777643 334
Q ss_pred --------ccchhhhhHHHHHHHHHHHHH
Q 041620 104 --------GTFNIGFQLCAAIGLLSANLL 124 (172)
Q Consensus 104 --------~~~~~~~~~~~~~g~~~~~~~ 124 (172)
.+..+.+...+.-+...+..+
T Consensus 148 ~q~~~~~~~~ffg~Ffii~~~~qv~gn~i 176 (390)
T KOG3097|consen 148 EQAGDGMKVRFFGEFFIIFQCAQVWGNLI 176 (390)
T ss_pred hhccCceeeeehhHHHHHHHHHHHHHHHH
Confidence 344555444444444444333
No 276
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=88.74 E-value=3.2 Score=31.28 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=80.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccch
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSV 90 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 90 (172)
.++..-..|.+...-.+-..+-.+......||+.--+=+.+..++.+.+.++.+++++.++-..+-.+..++.|..-..-
T Consensus 57 r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTF 136 (409)
T KOG3880|consen 57 RECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITF 136 (409)
T ss_pred ccccccccchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeeh
Confidence 34444445666666667777778888888988654333455567777888888899999999888888888877644333
Q ss_pred hhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 91 PLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 91 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
-. .+..+++. ..+-++++.+.++.+|..--. +.... ..+-|....+...+..+...
T Consensus 137 L~-lss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~ 193 (409)
T KOG3880|consen 137 LA-LSSRYPSI----VIAGWSSGTGGAGLIGASSYAFLTSWA-NLSPKSTLLIMLFLPALFAF 193 (409)
T ss_pred hh-hhccCCCc----eeccccCCCCcchhhhhhHHHHHhhhc-CCChhhHHHHHHHHHHHHHH
Confidence 32 23333332 233344444444455544333 32221 23456666665555444433
No 277
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=88.13 E-value=0.42 Score=37.45 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhh
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 84 (172)
-.|=+.++.+...+.+...-++.||+|-|+.+..+...+.++.......++.+....-+-..|+-.+
T Consensus 334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~ 400 (498)
T KOG0637|consen 334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSS 400 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeec
Confidence 3344566667778889999999999996666565555555555555556666666565555554333
No 278
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=87.10 E-value=4.4 Score=32.48 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHH
Q 041620 72 LIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLL 124 (172)
Q Consensus 72 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (172)
+++.-.+..+.....+....++-++..+|..-|+.|.+.|...++|+---..+
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~ 460 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTF 460 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHH
Confidence 34445666777777888899999999999999999999999999987654444
No 279
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.11 E-value=5.1 Score=24.84 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh-chhHHHHH
Q 041620 21 FISSLYITGILASLIASSVTRAL-GRKVSILI 51 (172)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~ 51 (172)
-.+.-++++++-....||+.||| |.++..++
T Consensus 47 klssefIsGilVGa~iG~llD~~agTsPwglI 78 (116)
T COG5336 47 KLSSEFISGILVGAGIGWLLDKFAGTSPWGLI 78 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 34555677777778889999986 44544333
No 280
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=85.86 E-value=0.22 Score=36.97 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhh-hchhHHHHHH--HHHHHHhhhhhh----------ccchhHHHHHHHHHHhhhhhhhcc
Q 041620 22 ISSLYITGILASLIASSVTRA-LGRKVSILIG--GVAFLAGSALGV----------CAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
...++++-.+|..+.++.-=+ ..+|++...+ -++.....+.+. ..+|-+..++..++.|+.+|...+
T Consensus 188 fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~t 267 (309)
T PF01733_consen 188 FLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLST 267 (309)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred HHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhhh
Confidence 445667777888777653211 1244443332 222222222221 123446667788999999999999
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
....+..+..++++|..+..+...+...|-.+|..++
T Consensus 268 l~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 268 LAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHH----------------------------------
T ss_pred ceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888877777777776664
No 281
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=85.43 E-value=8.6 Score=25.56 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=46.9
Q ss_pred hhhhhhchhHHHHHHH------HHHHHhhhhhhc----cchhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccch
Q 041620 38 SVTRALGRKVSILIGG------VAFLAGSALGVC----AFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFN 107 (172)
Q Consensus 38 ~l~d~~gr~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 107 (172)
.++||.-||..+..+. ..+.++.++..- .++...+.....+.|+|. ....+..++...++++.|...
T Consensus 56 ~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSll 132 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLL 132 (153)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcc
Confidence 4677777776554443 111122211111 134444555555555544 336677778888889899999
Q ss_pred hhhhHHHHHHHHH
Q 041620 108 IGFQLCAAIGLLS 120 (172)
Q Consensus 108 ~~~~~~~~~g~~~ 120 (172)
|+-.+-.+++-+.
T Consensus 133 G~~e~~~N~~r~~ 145 (153)
T PF11947_consen 133 GWEEFKRNWGRMW 145 (153)
T ss_pred cHHHHHHhHHHHH
Confidence 9988877776554
No 282
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=85.38 E-value=5.6 Score=30.53 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH--HhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccC
Q 041620 21 FISSLYITGILASLIASSVTRALGRKVSILIGGVAFL--AGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMT 98 (172)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 98 (172)
.-....+.++++++..|++--.+.|..-++++..... -..+.+.-+++.|...++-++...-.....+....-+++..
T Consensus 276 veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL 355 (433)
T KOG3810|consen 276 VEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNL 355 (433)
T ss_pred HHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhh
Confidence 3455567788899999999988887644444443333 23334455678999888888887777777777777788888
Q ss_pred CccccccchhhhhHHH
Q 041620 99 TPKYRGTFNIGFQLCA 114 (172)
Q Consensus 99 ~~~~r~~~~~~~~~~~ 114 (172)
+.|.-|...|++.+..
T Consensus 356 ~~e~~gLvFGiNTFvA 371 (433)
T KOG3810|consen 356 SSELFGLVFGINTFVA 371 (433)
T ss_pred hhhhheeeeehHHHHH
Confidence 8888898888876653
No 283
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=83.60 E-value=3.2 Score=33.78 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 68 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
|.++.+.--+++|++..........+.-+.+|++-|..+++++....++|..+...+..
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~ 515 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVS 515 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777899999999988888999999999999999999999999999999988876
No 284
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.50 E-value=3.7 Score=34.36 Aligned_cols=56 Identities=7% Similarity=-0.041 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhH-HHHHHHHHHHHHHh
Q 041620 71 MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQL-CAAIGLLSANLLNC 126 (172)
Q Consensus 71 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~ 126 (172)
.+++..++..+..+...+.....+.+..|+|+|..++|+..+ ...+|.+-+|++-+
T Consensus 588 ~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG 644 (735)
T KOG3626|consen 588 IFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFG 644 (735)
T ss_pred HHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhh
Confidence 344444444555555567777888899999999999999544 55678888888887
No 285
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=83.07 E-value=16 Score=26.74 Aligned_cols=98 Identities=14% Similarity=0.021 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhh-hchhHHHHH----HHHHHHHhhhhhh-cc--c--hhHHHHHHHHHHhhhhhhhccchh
Q 041620 22 ISSLYITGILASLIASSVTRA-LGRKVSILI----GGVAFLAGSALGV-CA--F--NIYMLIFGRLLLGVGIGFGNQSVP 91 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~----~~~~~~~~~~~~~-~~--~--~~~~~~~~~~l~g~~~~~~~~~~~ 91 (172)
.-.+..|..+|.+..|.+... +.||+-+.. +.++..+...... .. + +...+.+..++.|++.=+.+++.-
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ViL 226 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVIL 226 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 344445666777777777664 456654442 2333333333321 11 1 356677888888887655566666
Q ss_pred hhhhccCCccccccchhhhhHHHHHHHHH
Q 041620 92 LYLSEMTTPKYRGTFNIGFQLCAAIGLLS 120 (172)
Q Consensus 92 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 120 (172)
..-.|.= ..++.+..-.++..+++|.++
T Consensus 227 ~lPhEyK-~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 227 NLPHEYK-GYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred cChhhhc-CCCcceehhHHHHHHHHHHHH
Confidence 5555552 222222333344455555433
No 286
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=79.94 E-value=7.7 Score=26.65 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhch
Q 041620 23 SSLYITGILASLIASSVTRALGR 45 (172)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~gr 45 (172)
..+.++..+++++.|++.||..+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 45667889999999999999886
No 287
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=79.05 E-value=2.7 Score=30.55 Aligned_cols=57 Identities=16% Similarity=-0.003 Sum_probs=34.7
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHhhh---cCCCCcchHHHHHhhhHHHHHHHHhhhhh
Q 041620 101 KYRGTFNIGFQLCAAIGLLSANLLNCTQ---KIKGGWGWRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 101 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
|+|+..+.....++++|..+....-... ...-..+|++.+.+.+++..+.++....+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777778888888887664432111 01112369999988877766555544333
No 288
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=79.02 E-value=10 Score=23.38 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGG 53 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~ 53 (172)
.+.......++..++..+.+.+.|+.|.+..+....
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHH
Confidence 334444445566666666666666666554444433
No 289
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=77.46 E-value=35 Score=27.29 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=45.8
Q ss_pred HHHhhhhhhhccchhhhhhccCCc-cccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHH
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTTP-KYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASI 149 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 149 (172)
++.|+............+.|.+|+ ++|...++-++...++...+..++.+ ......||.....+.-+..++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~--~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSG--NVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHH
Confidence 344666666666677778888875 45777888887777776655555545 344456898766655444433
No 290
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=73.97 E-value=41 Score=26.35 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhhhhhhhccchhhhhhccCCcccc
Q 041620 68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYR 103 (172)
Q Consensus 68 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 103 (172)
.++..++.-.+.+.+.+..+.......++. |+|.-
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~yt 150 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYT 150 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHH
Confidence 455666777888899888888888776655 55553
No 291
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=68.55 E-value=23 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhH
Q 041620 23 SSLYITGILASLIASSVTRALGRKV 47 (172)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~gr~~ 47 (172)
..+.++..+.+.+.|++.+|..+++
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccc
Confidence 3456788888999999999988764
No 292
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=68.01 E-value=16 Score=22.59 Aligned_cols=50 Identities=18% Similarity=0.079 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC 65 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~ 65 (172)
+..|=....+.-..++.++..++..|+..+.+-=.++..++.++.....+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 44455666777778889999999999988877777777776666554443
No 293
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=63.76 E-value=17 Score=28.47 Aligned_cols=117 Identities=15% Similarity=0.020 Sum_probs=67.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh------hchhHHHHHHHHHH-HHhhhhhhc-c-------chh-HHH
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRA------LGRKVSILIGGVAF-LAGSALGVC-A-------FNI-YML 72 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~------~gr~~~~~~~~~~~-~~~~~~~~~-~-------~~~-~~~ 72 (172)
-|.|++.++.+++.....--+++.....|+++.+ +-|+..+.+..... ......... . ..+ ...
T Consensus 293 le~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~ 372 (510)
T KOG3574|consen 293 LEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILL 372 (510)
T ss_pred HHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHH
Confidence 3678888888877755555555566666655542 22221111111111 111111111 1 122 233
Q ss_pred HHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHH
Q 041620 73 IFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 73 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
+....+.+......+....+..++..|+...|+.|++.+...++|+---..+.
T Consensus 373 i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~ 425 (510)
T KOG3574|consen 373 ITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVA 425 (510)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHH
Confidence 33455556666666777888999999999999999999998888865444443
No 294
>PRK02237 hypothetical protein; Provisional
Probab=63.04 E-value=30 Score=21.50 Aligned_cols=48 Identities=17% Similarity=0.040 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh
Q 041620 17 LLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV 64 (172)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~ 64 (172)
..|=....+.-..++.++.+++..|+..+.+-=.++..++.++..+..
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 355566677777788888899999988877666666666666654443
No 295
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=61.91 E-value=51 Score=22.87 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhh
Q 041620 26 YITGILASLIASSV 39 (172)
Q Consensus 26 ~~~~~~~~~~~g~l 39 (172)
..+.++|..+.+.+
T Consensus 56 i~~F~~G~~~~~~i 69 (209)
T PF06912_consen 56 ILSFILGAFLAGLI 69 (209)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566666666
No 296
>COG4769 Predicted membrane protein [Function unknown]
Probab=60.88 E-value=12 Score=25.15 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhh
Q 041620 27 ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGV 81 (172)
Q Consensus 27 ~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 81 (172)
..+.+.+...-++..++|+|.+-.++.-. .-++.+|..++++.+++.+-
T Consensus 84 faG~i~S~L~m~~l~~f~~k~~S~lgiS~------mGaF~hNl~QLivas~Lv~~ 132 (181)
T COG4769 84 FAGAILSTLFMYFLYQFGPKYLSLLGISV------MGAFTHNLGQLIVASFLVFT 132 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCceEeeeehhh------HHHHHHhHHHHHHHHHHHhc
Confidence 44455566666777888888764444322 22356777777777777654
No 297
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=60.55 E-value=42 Score=28.12 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 68 NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 68 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+.++.+.--++.+.+..........+..+..|++.|....+++....++|..+...+..
T Consensus 564 ~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~ 622 (654)
T TIGR00926 564 SILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAE 622 (654)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777888888877777778888889999999999998888899888877765
No 298
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=60.25 E-value=67 Score=23.74 Aligned_cols=54 Identities=11% Similarity=-0.038 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 72 LIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 72 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.-..|.+.|+-.- .+...++++.-.+|++++-...-=...+.++..++.|+++.
T Consensus 22 ~~~lr~~~g~~~v-lf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~ 75 (287)
T PF07760_consen 22 IPPLRVILGFPFV-LFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGL 75 (287)
T ss_pred hhHHHHHHHHHHH-HHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777776553 35667888888888655432222233344445566666665
No 299
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=56.30 E-value=15 Score=28.09 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=48.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhhhhh
Q 041620 13 FDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~ 85 (172)
+.-+.++.....+.++..+.+.+.|.+..++||-+....+.+.-..-.....+. .+.+.+.+...+.|.+-+.
T Consensus 307 ~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aalwgv~d~v 383 (390)
T KOG3097|consen 307 LGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAALWGVGDAV 383 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehhhcCccHHH
Confidence 345678889999999999999999999999999988777655443322222221 3444455555555555443
No 300
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=54.27 E-value=51 Score=20.49 Aligned_cols=50 Identities=16% Similarity=0.036 Sum_probs=28.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhh
Q 041620 35 IASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIG 84 (172)
Q Consensus 35 ~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~ 84 (172)
..-+.+|.+.|+...+...+...++......+ .+.++=.+...-.|+|..
T Consensus 19 ~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v 69 (106)
T COG2076 19 TLLKYSDGFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIV 69 (106)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 34577888888777776666666665554443 333333333444444443
No 301
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=48.77 E-value=47 Score=24.68 Aligned_cols=51 Identities=6% Similarity=0.085 Sum_probs=23.3
Q ss_pred hhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 107 NIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 107 ~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.++.......-.+++.+.|. +..++. ..|.+.|++..+++++..+..+++.
T Consensus 261 LTvvt~IflP~t~IaGiyGMNf~~mP~-l~~~~gy~~~l~~m~~i~~~~~~~f 312 (318)
T TIGR00383 261 LTVVSTIFIPLTFIAGIYGMNFKFMPE-LNWKYGYPAVLIVMAVIALGPLIYF 312 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCcc-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444443 222332 3577777665555554444434333
No 302
>PRK03818 putative transporter; Validated
Probab=48.26 E-value=1.5e+02 Score=24.30 Aligned_cols=84 Identities=6% Similarity=-0.112 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhhhccchhhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGFGNQSVPLYL 94 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 94 (172)
.+.|+...++.+|.-.|.-+..-+.+..|.+..+ .+.++..+..+..... ....-+-..+.+-.++.+...++.-.++
T Consensus 435 ~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 435 RELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIG-YGFLITAVPLLIVGILARMLAKMNYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccCCCcHHHHHH
Confidence 4566666666777777776666666666766554 3333333332222221 1111111112222233444556666777
Q ss_pred hcc-CCc
Q 041620 95 SEM-TTP 100 (172)
Q Consensus 95 ~~~-~~~ 100 (172)
.|. .++
T Consensus 514 ~~~~~~~ 520 (552)
T PRK03818 514 NNLHPTS 520 (552)
T ss_pred hcccCCC
Confidence 774 443
No 303
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=46.98 E-value=29 Score=20.92 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhhhhhhhchh
Q 041620 26 YITGILASLIASSVTRALGRK 46 (172)
Q Consensus 26 ~~~~~~~~~~~g~l~d~~gr~ 46 (172)
.....+.+.+.|.+.||..||
T Consensus 85 ~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 85 FAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 345556677788888888765
No 304
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=43.35 E-value=7.9 Score=31.37 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCCCCCChhHHHHHHHHHHH-HHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhh---hh-----------ccc--
Q 041620 7 VSNYSKFDSQLLTTFISSLYI-TGILASLIASSVTRALG--RKVSILIGGVAFLAGSAL---GV-----------CAF-- 67 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~---~~-----------~~~-- 67 (172)
++.+++.++++...+.....+ +.++|.+++|++..|+. .|+.+.+..+...++.+. .. ...
T Consensus 332 lE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y 411 (539)
T PF03137_consen 332 LESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPY 411 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCcc
Confidence 567899999999988876664 77789999999999985 344444333333222211 00 001
Q ss_pred --------------------------------------hhHHHHHHHHHHhhhhhhhccchhhhhhccCCccccccchhh
Q 041620 68 --------------------------------------NIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIG 109 (172)
Q Consensus 68 --------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 109 (172)
++..+.+..++.-+..+..........-+..|+++|..++|+
T Consensus 412 ~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv 491 (539)
T PF03137_consen 412 HNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGV 491 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhH
Confidence 122333444444455555566666677788999999999999
Q ss_pred hh-HHHHHHHHHHHHHHh
Q 041620 110 FQ-LCAAIGLLSANLLNC 126 (172)
Q Consensus 110 ~~-~~~~~g~~~~~~~~~ 126 (172)
.. ....+|.+-+|++.+
T Consensus 492 ~~~~~rllg~IPgPIifG 509 (539)
T PF03137_consen 492 QWLIIRLLGFIPGPIIFG 509 (539)
T ss_dssp ------------------
T ss_pred HHHHHHhhcCcchHHHHh
Confidence 55 455678888898877
No 305
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.24 E-value=65 Score=18.56 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhhhhhh
Q 041620 27 ITGILASLIASSVTRAL 43 (172)
Q Consensus 27 ~~~~~~~~~~g~l~d~~ 43 (172)
....+.+++.|+..+.+
T Consensus 18 ~~~~iisfi~Gy~~q~~ 34 (76)
T PF06645_consen 18 IISAIISFIVGYITQSF 34 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555544
No 306
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.03 E-value=79 Score=19.43 Aligned_cols=30 Identities=7% Similarity=-0.104 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhhhh-hhchhHHHHHHHHHH
Q 041620 27 ITGILASLIASSVTR-ALGRKVSILIGGVAF 56 (172)
Q Consensus 27 ~~~~~~~~~~g~l~d-~~gr~~~~~~~~~~~ 56 (172)
+..++...+.|+..| +++-++.+.+..++.
T Consensus 53 v~pil~G~~lG~WLD~~~~t~~~~tl~~lll 83 (100)
T TIGR02230 53 AIPTLLGVAVGIWLDRHYPSPFSWTLTMLIV 83 (100)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 344455566666666 567665444444333
No 307
>PRK09546 zntB zinc transporter; Reviewed
Probab=42.77 E-value=53 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=10.9
Q ss_pred chHHHHHhhhHHHHHHHHhhh
Q 041620 135 GWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 135 ~w~~~~~~~~~~~~~~~~~~~ 155 (172)
+|++.|++..++++++.+..+
T Consensus 295 ~~~~gy~~~l~im~~i~~~~~ 315 (324)
T PRK09546 295 GWPFGFSIFCLLLVVLIGGVA 315 (324)
T ss_pred CCcchHHHHHHHHHHHHHHHH
Confidence 577777655444444443333
No 308
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=42.66 E-value=32 Score=25.86 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=14.0
Q ss_pred chHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 135 GWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 135 ~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
+|++.|++..+++++.+++.+++.+
T Consensus 293 ~~~~Gy~~~l~~m~~~~~~~~~~fr 317 (322)
T COG0598 293 DWPYGYPIALILMLLLALLLYLYFR 317 (322)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5777666665655555554444443
No 309
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=42.04 E-value=12 Score=26.75 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=53.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
+.++||.|..+.--..+.+.+|.++|.++.+.++.- .... +...-.....-.|.|.+..
T Consensus 130 I~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas~-------------------~a~~--~~fhP~ALAMasGvGSgSM 188 (241)
T PF11299_consen 130 ISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLASL-------------------LASL--GIFHPYALAMASGVGSGSM 188 (241)
T ss_pred eehhcCCCCccccceEEEeeehhhHHHHHHHHHHHH-------------------HHhc--cCCCHHHHHHHcCCcHHHH
Confidence 356666665555445566666666666655543321 0000 1111133445568888888
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHH
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLL 124 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (172)
.++...-+.+.+| +......++...+..+.+..|-.+
T Consensus 189 MaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~ 225 (241)
T PF11299_consen 189 MAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYM 225 (241)
T ss_pred HHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888886 444555555544444444444333
No 310
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=41.86 E-value=2e+02 Score=23.74 Aligned_cols=83 Identities=12% Similarity=-0.006 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHh-hhhhhhccchhhhhh
Q 041620 17 LLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLG-VGIGFGNQSVPLYLS 95 (172)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~ 95 (172)
+.|+...++.+|.-.|.-+..-+.+ .|-+.. +.+.++..+..+.......++.=+=.-...| ++.+...++......
T Consensus 451 ~~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~a~ 528 (562)
T TIGR03802 451 DLGLALFIAVVGLSAGPQAVTAIKE-MGLTLF-LLGIVVTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGAVL 528 (562)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHHHH
Confidence 4677777777777777766666643 555444 3444444333332221111110000112223 333445566667777
Q ss_pred ccCCcc
Q 041620 96 EMTTPK 101 (172)
Q Consensus 96 ~~~~~~ 101 (172)
|..+++
T Consensus 529 ~~~~~~ 534 (562)
T TIGR03802 529 ERAGSS 534 (562)
T ss_pred HhcCCC
Confidence 766544
No 311
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=40.42 E-value=1.4e+02 Score=21.45 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q 041620 26 YITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLL 78 (172)
Q Consensus 26 ~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (172)
.+|..+|..+..++.||+...-.-..+.+...++.-...-.++....+++..+
T Consensus 12 l~G~~iG~~~~~~i~~~~~~~l~~~~Gl~~l~iGi~~~~~~~~~~~vi~slvl 64 (226)
T PF04474_consen 12 LLGGLIGLLLGRRIPERIKDTLMQALGLCVLAIGISMALKGQNPLLVILSLVL 64 (226)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 45677777777778888777666666666666665444444555544444333
No 312
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=38.79 E-value=1.2e+02 Score=20.48 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhh-hhhhhccchhhh
Q 041620 15 SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGV-GIGFGNQSVPLY 93 (172)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~ 93 (172)
-.+.++..-.+.+|.-.+.-+..-+.+. |-|. +..+.+...+..+.......+..=+=.-...|. ..+..+++....
T Consensus 55 l~~~GL~lFl~~VGl~aG~~F~~~l~~~-G~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~ 132 (169)
T PF06826_consen 55 LRQLGLALFLAAVGLSAGPGFFSSLKRG-GLKL-LLLGVIITLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAA 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHH
Confidence 3567777777778888887777766665 5443 344444444443333222111000001122232 223345566666
Q ss_pred hhccCC
Q 041620 94 LSEMTT 99 (172)
Q Consensus 94 ~~~~~~ 99 (172)
..|...
T Consensus 133 A~~~~~ 138 (169)
T PF06826_consen 133 AQEAIS 138 (169)
T ss_pred HHHhhh
Confidence 777733
No 313
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=37.59 E-value=2e+02 Score=22.60 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=20.5
Q ss_pred hhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 94 LSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 94 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+.+...-++---+.++......+|....++.+.
T Consensus 300 l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~ 332 (403)
T TIGR00836 300 LKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAA 332 (403)
T ss_pred HHHHcCCCCCcccchhhhhhHHHHHHHHHHhcc
Confidence 444444444444677777777777777777654
No 314
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=35.96 E-value=2.4e+02 Score=22.90 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=40.6
Q ss_pred HhhhhhhhccchhhhhhccCCcc-ccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHH
Q 041620 79 LGVGIGFGNQSVPLYLSEMTTPK-YRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPAS 148 (172)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 148 (172)
.|+............+.+.+|++ ++...+|-++...++-..+...+++ ......||+....+.-+..+
T Consensus 292 Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~--~iir~~GW~~~AlitPiv~l 360 (491)
T PF03219_consen 292 YGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSS--NIIRRFGWRTAALITPIVIL 360 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHhHHHHH
Confidence 45555555555666777777754 4555666666655555555555555 33456689887776544443
No 315
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=35.57 E-value=1.3e+02 Score=19.91 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHH
Q 041620 25 LYITGILASLIASSVTRALGRKVSILIG 52 (172)
Q Consensus 25 ~~~~~~~~~~~~g~l~d~~gr~~~~~~~ 52 (172)
+.+++.+.+...-.+..|..||+.-..+
T Consensus 70 ~Sl~Ggl~S~~vM~ll~~~~~~~~S~~g 97 (148)
T PF07456_consen 70 FSLAGGLLSLLVMALLKKLFKKKFSLIG 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccHHH
Confidence 3455566666666777777665544433
No 316
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=35.31 E-value=1.4e+02 Score=19.94 Aligned_cols=34 Identities=9% Similarity=-0.179 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSI 49 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~ 49 (172)
.+.++..-++.+|.-.+.-+..-+.+.-|-++..
T Consensus 56 ~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~ 89 (154)
T TIGR01625 56 REFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRIN 89 (154)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 4677777777777777777666665543344443
No 317
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=34.87 E-value=1.3e+02 Score=22.77 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc
Q 041620 18 LTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA 66 (172)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 66 (172)
..+.....++|..++..+.+++.|++|....+.+..+.+.++.+.....
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 3456666778888899999999999998888888877777766655443
No 318
>COG2119 Predicted membrane protein [Function unknown]
Probab=34.29 E-value=1.6e+02 Score=20.43 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHh
Q 041620 26 YITGILASLIASSVTRALGRKVSILIGGVAFLAG 59 (172)
Q Consensus 26 ~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~ 59 (172)
.+.+.++...+.++++|+..|++-..+.+++.+.
T Consensus 144 ~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~f 177 (190)
T COG2119 144 ILASVLAVLLGKLIAGKLPERLLRFIAALLFLIF 177 (190)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 4566677788889999999998877776665443
No 319
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=34.22 E-value=59 Score=15.47 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 041620 24 SLYITGILASLIASSVTRA 42 (172)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~ 42 (172)
...+.+++.+.+.+|+-+|
T Consensus 16 AP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 16 APIIAGIIASLIVGWLRNR 34 (35)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 3456777777888887664
No 320
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=33.35 E-value=1.8e+02 Score=20.76 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHH
Q 041620 26 YITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLL 78 (172)
Q Consensus 26 ~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (172)
.+|..+|..+..++.||+.+--.-..+.....++.-...-+.|....++...+
T Consensus 13 l~G~iiG~l~~~klper~k~~l~~~~Gl~~l~iGI~m~~~~~n~~~~ilslv~ 65 (228)
T COG1811 13 LIGGIIGLLIGKKLPERIKDILMQCLGLAILGIGIKMALQAKNDIMILLALVI 65 (228)
T ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 35666666666667777766655556666555655555556777666555443
No 321
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=32.59 E-value=1.3e+02 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=14.8
Q ss_pred CccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 99 TPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 99 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
.+++||......-..+.+.+.++...++
T Consensus 291 ~~~~rg~l~t~~i~~y~~~~~iaGy~S~ 318 (521)
T PF02990_consen 291 SPNNRGSLLTAAIILYALTSFIAGYVSA 318 (521)
T ss_pred cccCcchHHHHHHHHHHHHhhHHHHHHH
Confidence 3455555555555555555555555554
No 322
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=32.10 E-value=1.8e+02 Score=22.85 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=27.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRAL 43 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 43 (172)
+.. .++++...+.+...+...+++++-+...++.
T Consensus 31 ~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~ 64 (415)
T TIGR00801 31 LAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQ 64 (415)
T ss_pred ccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 345 7888899888988899999999888777654
No 323
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=31.91 E-value=1.1e+02 Score=23.15 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 107 NIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 107 ~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
.++.......-.+++.+.|. +..+. ...|.+.|++.....++..+
T Consensus 259 lTv~s~if~pptliagiyGMNf~~mP-~~~~~~g~~~~l~~~~~~~~ 304 (316)
T PRK11085 259 FSVVSVVFLPPTLVASSYGMNFEFMP-ELKWSFGYPGAIILMILAGL 304 (316)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCC-CCCCcHHHHHHHHHHHHHHH
Confidence 34444333333444444443 22233 23577776655554444443
No 324
>PRK10692 hypothetical protein; Provisional
Probab=31.84 E-value=1.2e+02 Score=18.13 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHhhh
Q 041620 45 RKVSILIGGVAFLAGSA 61 (172)
Q Consensus 45 r~~~~~~~~~~~~~~~~ 61 (172)
||...+.+-+++.++.+
T Consensus 3 Rk~a~~~GN~lMglGmv 19 (92)
T PRK10692 3 RKNASLLGNVLMGLGLV 19 (92)
T ss_pred chhhHHHhhHHHHHHHH
Confidence 56666666666655544
No 325
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=31.73 E-value=1.4e+02 Score=18.93 Aligned_cols=47 Identities=19% Similarity=-0.075 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCC
Q 041620 53 GVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTT 99 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 99 (172)
.++..+++++.++......---.|.+.+.|.-+.++.-.++..|...
T Consensus 37 l~VNi~GsfllG~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~e~~~ 83 (119)
T PRK14230 37 LFANWTGALLIGIFAETVNHPQWKLLLITGFLGSLTTLSGFSLETVT 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhchHhhHHHHHHHHHH
Confidence 44555555554433211000012333344444445556666666654
No 326
>PLN02332 membrane bound O-acyl transferase (MBOAT) family protein
Probab=31.57 E-value=2.7e+02 Score=22.31 Aligned_cols=30 Identities=3% Similarity=-0.179 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q 041620 46 KVSILIGGVAFLAGSALGVCAFNIYMLIFG 75 (172)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (172)
|+...-..+.+.++.+.-++..++.+..+.
T Consensus 341 ~~~~~~~~~t~~~sa~WHG~~~gYyl~fl~ 370 (465)
T PLN02332 341 KPGFFQLLATQTVSAVWHGLYPGYILFFVQ 370 (465)
T ss_pred chhHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 343433344555566666666666555443
No 327
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.41 E-value=93 Score=19.29 Aligned_cols=39 Identities=26% Similarity=0.069 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhh
Q 041620 22 ISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGS 60 (172)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~ 60 (172)
...+.-..++.++.+++..|+..+.+-=..+..++.++.
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~ 99 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGV 99 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhce
Confidence 334444556677777777777666555455554444443
No 328
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=30.49 E-value=1.8e+02 Score=19.94 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhh
Q 041620 27 ITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGV 81 (172)
Q Consensus 27 ~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 81 (172)
+...+..++.-.+..|.++|-.+.+...+.++..+..+ +.|...+...+.|+
T Consensus 39 i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G---~~~~~~~~~iv~gl 90 (186)
T PF09605_consen 39 IAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG---HGWPMLIVCIVGGL 90 (186)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Confidence 44456666677788888888777766666655443332 22444444444443
No 329
>PRK04972 putative transporter; Provisional
Probab=29.97 E-value=3.2e+02 Score=22.58 Aligned_cols=95 Identities=8% Similarity=-0.066 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHH-HHHHHHHHhhhhhhhccchhhhh
Q 041620 16 QLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYM-LIFGRLLLGVGIGFGNQSVPLYL 94 (172)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~ 94 (172)
.+.|+......+|.-.|.-+..-+.+ .|-+.. ..+.++..+..+...+...+.. +-..+.+-.++.+...++...+.
T Consensus 445 ~~~GL~lFla~vGl~aG~~f~~~~~~-~g~~~~-~~g~~~t~~~~~~~~~~~~~~~k~~~~~~~G~~aG~~t~~~~l~~~ 522 (558)
T PRK04972 445 KEFGLMVFMAGVGLSAGSGINNGLGA-VGGQML-IAGLIVSLVPVVICFLFGAYVLRMNRALLFGAIMGARTCAPAMEII 522 (558)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCCcHHHHHH
Confidence 45666666666676666666665533 454443 3444444333332222211111 11112222344455667778888
Q ss_pred hccCCccccccchhhhhH
Q 041620 95 SEMTTPKYRGTFNIGFQL 112 (172)
Q Consensus 95 ~~~~~~~~r~~~~~~~~~ 112 (172)
.|..+++.-...++..+.
T Consensus 523 ~~~~~~~~~~~gYa~~yp 540 (558)
T PRK04972 523 SDTARSNIPALGYAGTYA 540 (558)
T ss_pred HhhcCCCCcccccHhHHH
Confidence 888766554444444333
No 330
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.11 E-value=1.2e+02 Score=17.42 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=17.9
Q ss_pred hhhhhchhHHHHHHHHHHHHhhhhhhccch
Q 041620 39 VTRALGRKVSILIGGVAFLAGSALGVCAFN 68 (172)
Q Consensus 39 l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~ 68 (172)
--|+-.|++-+.+.+.+-..+.++..+...
T Consensus 10 ~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~ 39 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMMGIRIPCFVLAAVVYR 39 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666777777766666655555554443
No 331
>PLN02878 homogentisate phytyltransferase
Probab=29.10 E-value=1.9e+02 Score=21.57 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=14.3
Q ss_pred hhchhHHHHHHHHHHHHhhh
Q 041620 42 ALGRKVSILIGGVAFLAGSA 61 (172)
Q Consensus 42 ~~gr~~~~~~~~~~~~~~~~ 61 (172)
|+|+|++..++..+..+...
T Consensus 195 ~lG~~~~~~i~~~ll~~aY~ 214 (280)
T PLN02878 195 RLGQKRVFWLCVNLLEMAYA 214 (280)
T ss_pred hhChHHHHHHHHHHHHHHHH
Confidence 48888888877766665554
No 332
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=28.46 E-value=1.5e+02 Score=18.17 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=25.1
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 103 RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 103 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
-|...+....+.++|....-.++. .|--+|.+.+++.+.....
T Consensus 27 ~GfslS~L~~slgv~Q~~~kvial--------QWIFAFvI~avlfv~sl~v 69 (97)
T PF08611_consen 27 MGFSLSYLTASLGVGQFFIKVIAL--------QWIFAFVIAAVLFVLSLVV 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 344555555566666665555432 4777777777766655443
No 333
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=28.33 E-value=1.7e+02 Score=18.99 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hhh
Q 041620 19 TTFISSLYITGILASLIASS-VTR 41 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~-l~d 41 (172)
.....++.+..+++.+++|| +++
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777778888887 555
No 334
>PRK11099 putative inner membrane protein; Provisional
Probab=27.68 E-value=3.1e+02 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhhhhccchhhhhhccCCcccccc
Q 041620 71 MLIFGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGT 105 (172)
Q Consensus 71 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 105 (172)
..++..++.|+|......+........-+-+.|..
T Consensus 286 ~~~lGg~lFG~GmvLaGGC~~g~L~~~GeG~~~a~ 320 (399)
T PRK11099 286 NAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHFW 320 (399)
T ss_pred HHHHHHHHHHHHHHHcCCChhhHHHHHcCCChhhH
Confidence 46778888898887766666665555555555543
No 335
>PRK14199 camphor resistance protein CrcB; Provisional
Probab=27.10 E-value=1.8e+02 Score=18.69 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=14.6
Q ss_pred HHHHhhhhhhhccchhhhhhccCCc
Q 041620 76 RLLLGVGIGFGNQSVPLYLSEMTTP 100 (172)
Q Consensus 76 ~~l~g~~~~~~~~~~~~~~~~~~~~ 100 (172)
|...+.|.-+.++.-.++..|...-
T Consensus 69 ~~~l~tGf~GgfTTFSTf~~E~~~l 93 (128)
T PRK14199 69 KLFLTTGIMGGLTTFSTFSYETINL 93 (128)
T ss_pred HHHHHhHHhcccccHHHHHHHHHHH
Confidence 3344444444566777777777653
No 336
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=27.07 E-value=1.4e+02 Score=19.52 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=16.7
Q ss_pred hhhccCCccccccchhhhhHHHH
Q 041620 93 YLSEMTTPKYRGTFNIGFQLCAA 115 (172)
Q Consensus 93 ~~~~~~~~~~r~~~~~~~~~~~~ 115 (172)
-+.|++|++.|....+.++....
T Consensus 59 aLkdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred HHhccCCHHHHHHHHHHHHHHHH
Confidence 35789999999877777654433
No 337
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.05 E-value=1.9e+02 Score=23.93 Aligned_cols=15 Identities=13% Similarity=0.456 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhhhh
Q 041620 71 MLIFGRLLLGVGIGF 85 (172)
Q Consensus 71 ~~~~~~~l~g~~~~~ 85 (172)
..++.-+++|+-.|-
T Consensus 367 ~~~~l~v~~G~~agY 381 (628)
T KOG1278|consen 367 AMVLLFVFMGFVAGY 381 (628)
T ss_pred HHHHHHHHHHHhhhh
Confidence 344455556665553
No 338
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=26.02 E-value=2.8e+02 Score=20.84 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=12.8
Q ss_pred hccCCccccccchhhhhHHHHH
Q 041620 95 SEMTTPKYRGTFNIGFQLCAAI 116 (172)
Q Consensus 95 ~~~~~~~~r~~~~~~~~~~~~~ 116 (172)
+...+.+++....+.|+..+.+
T Consensus 273 ~~~~~~~~~~~~~~~y~~iw~l 294 (308)
T PRK12887 273 SQRVDLQDKQAIAQFYQFIWKL 294 (308)
T ss_pred HhhcCcccchHHHHHHHHHHHH
Confidence 3344556666666666665544
No 339
>PRK14214 camphor resistance protein CrcB; Provisional
Probab=25.67 E-value=1.8e+02 Score=18.34 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=23.8
Q ss_pred HHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCc
Q 041620 53 GVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTP 100 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 100 (172)
.+...+++++.++......---.|.+.+.|.-+.++.-.++..|...-
T Consensus 39 l~vNv~GsfllG~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~l 86 (118)
T PRK14214 39 FFINITGSFLLGFLVSSALGPVWQLFLGTGFMGGYTTFSTFKVESMEL 86 (118)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 455566666555432111001124444444444566677777777653
No 340
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=25.23 E-value=75 Score=19.60 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=14.0
Q ss_pred CCcchHHHHHhhhHHHHHHHHh
Q 041620 132 GGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 132 ~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
+..+|..++++...++++...+
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~ 76 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGV 76 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHH
Confidence 4568999988765555544433
No 341
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=25.22 E-value=1.6e+02 Score=17.49 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHhhh
Q 041620 45 RKVSILIGGVAFLAGSA 61 (172)
Q Consensus 45 r~~~~~~~~~~~~~~~~ 61 (172)
||...+.+-.++.++.+
T Consensus 3 Rk~a~~~GN~lMglGmv 19 (89)
T PF10762_consen 3 RKNAFLLGNVLMGLGMV 19 (89)
T ss_pred chhhHHHhhHHHHHhHH
Confidence 55566666655555543
No 342
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=25.18 E-value=1.5e+02 Score=17.30 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=9.7
Q ss_pred hhhhhhhhhchhHHHHHH
Q 041620 35 IASSVTRALGRKVSILIG 52 (172)
Q Consensus 35 ~~g~l~d~~gr~~~~~~~ 52 (172)
+.-++..|.|+|+.-+++
T Consensus 19 ~GD~iG~kvGKkrlslFg 36 (79)
T PF11283_consen 19 LGDRIGSKVGKKRLSLFG 36 (79)
T ss_pred HHHHHHHHHhHHHhhhhc
Confidence 344444456677765543
No 343
>PRK14228 camphor resistance protein CrcB; Provisional
Probab=25.17 E-value=1.9e+02 Score=18.38 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=21.8
Q ss_pred HHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCC
Q 041620 53 GVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTT 99 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 99 (172)
.++..+++++.++......---.+.+.+.|.-+.++.-.++..|...
T Consensus 41 l~vNi~G~fllG~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~ 87 (122)
T PRK14228 41 LAVNVSGAALLGFLAGLALPKDAALLAGTAFVGAYTTFSTWMLETQR 87 (122)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44555666555433211100012333344444446666677777664
No 344
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=24.43 E-value=3.4e+02 Score=21.03 Aligned_cols=115 Identities=17% Similarity=0.044 Sum_probs=64.6
Q ss_pred CCCChhHHHHHHHH-----HHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHhhhhhhcc--chhH-----------
Q 041620 11 SKFDSQLLTTFISS-----LYITGILASLIASSVTRALG--RKVSILIGGVAFLAGSALGVCA--FNIY----------- 70 (172)
Q Consensus 11 ~~~s~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~g--r~~~~~~~~~~~~~~~~~~~~~--~~~~----------- 70 (172)
.+.+++..+-.... +.+..+.+.++.-.+.|+.| ++..+..+..+.+++....... +|+.
T Consensus 153 ~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~ 232 (354)
T PF05631_consen 153 RGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGS 232 (354)
T ss_pred cCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHH
Confidence 35555544443322 23445556666667777765 5667777777776665544321 2211
Q ss_pred -----HHHHH---HHHHhhhhhhhccchhhhhhccCCc---cccccchhhhhHHHHHHHHHHHHHH
Q 041620 71 -----MLIFG---RLLLGVGIGFGNQSVPLYLSEMTTP---KYRGTFNIGFQLCAAIGLLSANLLN 125 (172)
Q Consensus 71 -----~~~~~---~~l~g~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (172)
..+.. ..++|+.+......++.++-.|.|. +.+..-.|+.........++|..+.
T Consensus 233 ~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf 298 (354)
T PF05631_consen 233 FREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLF 298 (354)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 01111 1355777777777788888888874 3345556666555555555555554
No 345
>PRK14232 camphor resistance protein CrcB; Provisional
Probab=24.30 E-value=2e+02 Score=18.25 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=13.1
Q ss_pred HHHhhhhhhhccchhhhhhccCC
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTT 99 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~ 99 (172)
.+.+.|.-+.++.-.++..|...
T Consensus 61 ~~l~tGf~GgfTTFSTf~~e~~~ 83 (120)
T PRK14232 61 LLLGDGFLGAYTTFSTFMYEGFN 83 (120)
T ss_pred HHHHHHhcccchhHHHHHHHHHH
Confidence 33344444446666777777765
No 346
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=24.16 E-value=26 Score=16.87 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=0.0
Q ss_pred hhhhchhH
Q 041620 40 TRALGRKV 47 (172)
Q Consensus 40 ~d~~gr~~ 47 (172)
+|||||..
T Consensus 3 sd~FGRd~ 10 (36)
T PF08080_consen 3 SDRFGRDL 10 (36)
T ss_dssp --------
T ss_pred cchhcchh
Confidence 56777654
No 347
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.97 E-value=2.1e+02 Score=18.00 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=16.9
Q ss_pred ccccccchhhh-hHHHHHHHHHHHHHHh-hhcCCCCcch
Q 041620 100 PKYRGTFNIGF-QLCAAIGLLSANLLNC-TQKIKGGWGW 136 (172)
Q Consensus 100 ~~~r~~~~~~~-~~~~~~g~~~~~~~~~-~~~~~~~~~w 136 (172)
++.++...++- .+=..-|.++|..++. +..+.+...|
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPw 75 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPW 75 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 34455555552 2222334455555554 4444444345
No 348
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=22.59 E-value=91 Score=23.30 Aligned_cols=48 Identities=8% Similarity=0.062 Sum_probs=27.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHH
Q 041620 104 GTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTI 152 (172)
Q Consensus 104 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 152 (172)
.....+++..+.....++..+-. ....+..-|+......+...++..+
T Consensus 240 ~~V~P~~~v~~t~~~i~~g~i~f-~e~~~~~~~~~~~~~~G~~~ii~GV 287 (300)
T PF05653_consen 240 SLVVPVYYVFFTLSSIIGGAIFF-QEFSRMTAWQIIGFLCGFLIIIIGV 287 (300)
T ss_pred eEEEeehhHHHHHHHHHHHHHHh-cccccccHHHHHHHHHHHHHHHHhh
Confidence 34567788888888888777743 1122222355555555555444443
No 349
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=22.35 E-value=1.9e+02 Score=17.34 Aligned_cols=31 Identities=3% Similarity=-0.146 Sum_probs=17.8
Q ss_pred ccCCCCC-CCCCChhHHHHHHHHHHHHHHHHH
Q 041620 3 EDTKVSN-YSKFDSQLLTTFISSLYITGILAS 33 (172)
Q Consensus 3 ~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~ 33 (172)
+..+.+. -..++.++.........+|...+.
T Consensus 7 ~~ld~p~~il~~~~De~~~~~~~~~~gi~~~~ 38 (95)
T PF07178_consen 7 KYLDDPPRILFWPMDEFIPALILFVIGILSGH 38 (95)
T ss_pred CccCCcceeeeecHHHHHHHHHHHHHHHHHhh
Confidence 3444433 366777777776666665555444
No 350
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=22.07 E-value=3.1e+02 Score=19.67 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHh
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAG 59 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~ 59 (172)
..+.+..+.|......+...+ +....+.+|.+.++....+.+...++
T Consensus 125 ~~~~s~~~ig~~~g~if~i~i---l~ss~i~r~~~~~~p~~LG~~Mi~~G 171 (224)
T PF09930_consen 125 SIGLSGWEIGLVLGLIFFILI---LLSSFIFRRLKKPYPIILGNFMIFLG 171 (224)
T ss_pred hcCchHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 345556666655544443333 45555566666555555555444444
No 351
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.95 E-value=86 Score=16.37 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=13.9
Q ss_pred hhhhhchhHHHHHHHHHHHHhh
Q 041620 39 VTRALGRKVSILIGGVAFLAGS 60 (172)
Q Consensus 39 l~d~~gr~~~~~~~~~~~~~~~ 60 (172)
.-+|+-|.|.-+++.++.++..
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~v 29 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILV 29 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHH
Confidence 4456777777777766655443
No 352
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=21.82 E-value=49 Score=18.04 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=14.3
Q ss_pred chHHHHHhhhHHHHHHHHhh
Q 041620 135 GWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 135 ~w~~~~~~~~~~~~~~~~~~ 154 (172)
+||...++.++++++.+.+.
T Consensus 4 g~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred cccchhhHHHHHHHHHHHHh
Confidence 78888888777777655433
No 353
>PRK14205 camphor resistance protein CrcB; Provisional
Probab=21.74 E-value=2.2e+02 Score=17.94 Aligned_cols=48 Identities=17% Similarity=-0.001 Sum_probs=23.2
Q ss_pred HHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhhhccCCc
Q 041620 53 GVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYLSEMTTP 100 (172)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 100 (172)
.+...+++++.++......---.+.+.+.|.-+.++.-.++..|...-
T Consensus 38 ~~vNv~GsfllG~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~l 85 (118)
T PRK14205 38 FLINITGAFLLGYIIGNGVTTGWQLLLGTGFMGAFTTFSTFKLESVQL 85 (118)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 444555555544332111000124444444444567777777777653
No 354
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=21.39 E-value=4e+02 Score=20.76 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=49.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh-ccchhHHHHHHHHHHhhhhhhhc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV-CAFNIYMLIFGRLLLGVGIGFGN 87 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~ 87 (172)
+..|+|+++.....+...+...+++++-.+-.-++|.|..+..+.-...+...... ....+.......++.|+-.-...
T Consensus 21 ~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v~Gii~illg 100 (406)
T TIGR03173 21 GALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGLFVILLA 100 (406)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888888888888888765333356666555544433222222111 11233333334444444332222
Q ss_pred cchhhhhhccCCcccc
Q 041620 88 QSVPLYLSEMTTPKYR 103 (172)
Q Consensus 88 ~~~~~~~~~~~~~~~r 103 (172)
.....+.+.+|+...
T Consensus 101 -~~~~~l~~~iPp~v~ 115 (406)
T TIGR03173 101 -PFFSKLVRFFPPVVT 115 (406)
T ss_pred -HHHHHHHHHCCcHHH
Confidence 234456677776543
No 355
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=21.15 E-value=1.5e+02 Score=15.75 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=16.8
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhhhh
Q 041620 37 SSVTRALGRKVSILIGGVAFLAGSAL 62 (172)
Q Consensus 37 g~l~d~~gr~~~~~~~~~~~~~~~~~ 62 (172)
|+.++-||..+++...+.++++....
T Consensus 16 GkVaPGWGTtplM~~~m~lf~vfl~i 41 (52)
T PF00737_consen 16 GKVAPGWGTTPLMGVFMALFAVFLLI 41 (52)
T ss_dssp T--BSTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCccchHHHHHHHHHHHHHHHH
Confidence 56667788888877777776665543
No 356
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=21.12 E-value=3.4e+02 Score=19.89 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHhhhhhh
Q 041620 67 FNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 67 ~~~~~~~~~~~l~g~~~~~ 85 (172)
++.|.+.+..++.+++.++
T Consensus 21 ~~~~l~~~~~~~~~F~~~m 39 (284)
T PF12805_consen 21 PYPWLLILVLALLTFFFGM 39 (284)
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 357
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=21.03 E-value=2.2e+02 Score=17.62 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHhhhhhhhccchhhhhhccCC
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTT 99 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~ 99 (172)
.+.+.|.-+.++.-.++..|...
T Consensus 57 ~~l~tGf~GgfTTFSTf~~e~~~ 79 (108)
T PRK14229 57 AILATGFCGGLTTFSTLNDELQR 79 (108)
T ss_pred HHHHhhHccccccHHHHHHHHHH
Confidence 34444444456667777777764
No 358
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=20.99 E-value=5.4e+02 Score=22.09 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=32.9
Q ss_pred Hhhhhhhhh----hchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhh
Q 041620 34 LIASSVTRA----LGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 34 ~~~g~l~d~----~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~ 85 (172)
.+.+-+.|. -||.+-++++..+++++.+...+. +..|.+.....+.+++.++
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~m 97 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFIL 97 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344556664 355677777777777777666654 5556666666666666654
No 359
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.78 E-value=1.4e+02 Score=19.91 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=12.9
Q ss_pred HHHHHHHhhhhhhhhhc
Q 041620 28 TGILASLIASSVTRALG 44 (172)
Q Consensus 28 ~~~~~~~~~g~l~d~~g 44 (172)
..+.++.+.|-+.|+||
T Consensus 101 l~i~gQli~glliD~fG 117 (150)
T COG3238 101 LVIAGQLIMGLLIDHFG 117 (150)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34567888888889887
No 360
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=20.08 E-value=2.1e+02 Score=16.96 Aligned_cols=38 Identities=13% Similarity=-0.022 Sum_probs=23.7
Q ss_pred HHHHHHhhhhhhhhhch-------hHHHHHHHHHHHHhhhhhhcc
Q 041620 29 GILASLIASSVTRALGR-------KVSILIGGVAFLAGSALGVCA 66 (172)
Q Consensus 29 ~~~~~~~~g~l~d~~gr-------~~~~~~~~~~~~~~~~~~~~~ 66 (172)
...+++..+++.+|..+ ++.+..+.++...+.+++...
T Consensus 31 ~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayq 75 (86)
T PF10785_consen 31 ATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQ 75 (86)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 34455666667666554 667777777766666665543
No 361
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=20.04 E-value=5.7e+02 Score=21.99 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=32.9
Q ss_pred HHhhhhhhhh----hchhHHHHHHHHHHHHhhhhhhcc-chhHHHHHHHHHHhhhhhh
Q 041620 33 SLIASSVTRA----LGRKVSILIGGVAFLAGSALGVCA-FNIYMLIFGRLLLGVGIGF 85 (172)
Q Consensus 33 ~~~~g~l~d~----~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~ 85 (172)
+.+.+-++|. -||.+-+.++.+++.++.+...+. +..|.+.....+.+++.++
T Consensus 40 G~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 40 GIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred HHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3445566774 356666777777777666665544 5556666666666666554
Done!