Query 041620
Match_columns 172
No_of_seqs 194 out of 1497
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 3E-23 1E-27 157.0 11.5 150 7-156 52-228 (438)
2 2gfp_A EMRD, multidrug resista 99.9 2.6E-23 8.8E-28 154.8 8.7 148 7-156 26-173 (375)
3 4aps_A DI-OR tripeptide H+ sym 99.9 2.2E-22 7.6E-27 154.6 12.8 146 8-155 46-194 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 6.8E-23 2.3E-27 155.5 8.4 149 6-157 53-206 (451)
5 4gc0_A D-xylose-proton symport 99.9 3.4E-22 1.2E-26 153.4 12.3 147 12-158 51-221 (491)
6 2xut_A Proton/peptide symporte 99.8 3.8E-20 1.3E-24 143.3 11.6 140 13-154 51-195 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 1.9E-16 6.5E-21 120.0 12.6 149 8-158 280-434 (451)
8 2cfq_A Lactose permease; trans 99.6 3.4E-15 1.2E-19 112.8 9.6 140 15-156 258-398 (417)
9 4aps_A DI-OR tripeptide H+ sym 99.5 2.7E-14 9.1E-19 109.6 8.6 145 11-158 314-472 (491)
10 3o7q_A L-fucose-proton symport 99.5 4E-14 1.4E-18 106.9 9.1 135 9-148 288-423 (438)
11 2cfq_A Lactose permease; trans 99.5 7.9E-16 2.7E-20 116.3 -0.6 142 8-153 35-183 (417)
12 4gc0_A D-xylose-proton symport 99.3 5.9E-12 2E-16 96.5 10.0 150 10-159 306-464 (491)
13 2xut_A Proton/peptide symporte 99.2 1.6E-10 5.3E-15 89.4 9.3 108 19-126 338-462 (524)
14 2gfp_A EMRD, multidrug resista 99.1 5.7E-12 1.9E-16 93.5 -0.0 130 9-143 228-362 (375)
15 2g9p_A Antimicrobial peptide l 83.8 0.56 1.9E-05 19.4 1.3 14 35-48 2-15 (26)
16 4dve_A Biotin transporter BIOY 54.9 30 0.001 23.1 5.2 24 23-46 100-123 (198)
17 4ev6_A Magnesium transport pro 43.7 17 0.00058 26.4 2.9 22 135-156 310-331 (339)
18 2iub_A CORA, divalent cation t 32.6 19 0.00064 26.4 1.6 24 135-158 334-357 (363)
19 1cmk_I CAMP-dependent protein 26.1 8.6 0.0003 16.5 -0.7 11 39-49 8-18 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=3e-23 Score=157.03 Aligned_cols=150 Identities=12% Similarity=0.096 Sum_probs=131.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hccchhHHHHHHHHHHhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCAFNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~g~~~ 83 (172)
.++++|.|+++.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++. .++++++.+++.|++.|++.
T Consensus 52 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 131 (438)
T 3o7q_A 52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGL 131 (438)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhH
Confidence 457789999999999999999999999999999999999999999999999999888 78899999999999999999
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hh-cCCCC----------------------cchHHH
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQ-KIKGG----------------------WGWRIS 139 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~----------------------~~w~~~ 139 (172)
+...+...+++.|++|+|+|++++++.+....+|..++|.+++ +. ...+. .+||+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 211 (438)
T 3o7q_A 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP 211 (438)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999988 43 22221 019999
Q ss_pred HHhhhHHHHHHHHhhhh
Q 041620 140 LAMAAAPASILTIGASD 156 (172)
Q Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (172)
|++.+....+..+...+
T Consensus 212 ~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 212 YMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98777666555544433
No 2
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=2.6e-23 Score=154.81 Aligned_cols=148 Identities=16% Similarity=0.252 Sum_probs=134.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 7 VSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 7 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
..+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.+...++++++.+.+.|++.|++.+..
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 105 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVG 105 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 87 NQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.+....++.|++|+|+|++.+++.+....+|..++|.+++ ...+..+||+.+.+.++..++..+...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG--LLDTMWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH--HSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 5555668999999888777666553333
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.88 E-value=2.2e-22 Score=154.57 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=130.6
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRA-LGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFG 86 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 86 (172)
++++|.|+++.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.+++.+++|++.+++.|++.|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCccc--cccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhh
Q 041620 87 NQSVPLYLSEMTTPKY--RGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGAS 155 (172)
Q Consensus 87 ~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 155 (172)
.+...+++.|++|+++ |+++.++++...++|..++|.+++ ...+..+||+.|++.++..++..+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG--AAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 777888899999999999999998 333446899999998776665554443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.88 E-value=6.8e-23 Score=155.52 Aligned_cols=149 Identities=18% Similarity=0.081 Sum_probs=132.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhc----cchhHHHHHHHHHHhh
Q 041620 6 KVSNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVC----AFNIYMLIFGRLLLGV 81 (172)
Q Consensus 6 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~ 81 (172)
...+++ .++++.+++.+...++..+++++.|+++||+|||++++.+.++.+++.+.+.+ +++++.++++|++.|+
T Consensus 53 ~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 53 YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 131 (451)
T ss_dssp HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 345677 99999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHHHHHHhhhhh
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPASILTIGASDW 157 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~ 157 (172)
+.+...+...+++.|++|+|+|++++++.+....+|..++|.+++ ...+..+ ||+.|++.++..++..+...+.
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 132 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL--LGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH--HHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999987 2223456 9999998887776655544333
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.88 E-value=3.4e-22 Score=153.44 Aligned_cols=147 Identities=21% Similarity=0.304 Sum_probs=126.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhh------------------ccchhHHHH
Q 041620 12 KFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGV------------------CAFNIYMLI 73 (172)
Q Consensus 12 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 73 (172)
+.++++.+++.+.+.+|..+|++++|+++||+|||++++++.+++.++.++++ .++|+++++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 44567788999999999999999999999999999999999999999888776 468999999
Q ss_pred HHHHHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhcC-----CCCcchHHHHHhhhHHH
Q 041620 74 FGRLLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQKI-----KGGWGWRISLAMAAAPA 147 (172)
Q Consensus 74 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~-----~~~~~w~~~~~~~~~~~ 147 (172)
++|++.|++.|...+..+.+++|..|+++|++..++.+.+...|..+++.++. .... .....||..+.+..+..
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999998888876 3222 12357899998888877
Q ss_pred HHHHHhhhhhc
Q 041620 148 SILTIGASDWW 158 (172)
Q Consensus 148 ~~~~~~~~~~~ 158 (172)
++..+...+.+
T Consensus 211 ~~~~~~~~~~p 221 (491)
T 4gc0_A 211 LLFLMLLYTVP 221 (491)
T ss_dssp HHHHHHGGGSC
T ss_pred hhhhhhhhcCC
Confidence 77666555544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=3.8e-20 Score=143.27 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=125.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHhhhhhhhccch
Q 041620 13 FDSQLLTTFISSLYITGILASLIASSVTRAL-GRKVSILIGGVAFLAGSALGVCAF-NIYMLIFGRLLLGVGIGFGNQSV 90 (172)
Q Consensus 13 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~ 90 (172)
.++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+...+++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999888888 99999999999999999999999
Q ss_pred hhhhhccCCccccccchhh---hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhh
Q 041620 91 PLYLSEMTTPKYRGTFNIG---FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGA 154 (172)
Q Consensus 91 ~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 154 (172)
.+++.|++|+++|++..+. ++...++|..++|.+++ ...+..+|++.|++.++..++..+..
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~--~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP--LLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST--HHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 88899999999999987 23344689999998877766554443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.70 E-value=1.9e-16 Score=120.01 Aligned_cols=149 Identities=13% Similarity=0.019 Sum_probs=124.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHHHHHHHHHH-Hhhhhhhcc--chhHHHHHHHHHHhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRAL--GRKVSILIGGVAFL-AGSALGVCA--FNIYMLIFGRLLLGVG 82 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~g~~ 82 (172)
++.+|.++.+.++..+...++..++.++.|++.||+ |||+.+..+..+.. ++.+...+. .+.+...+..++.|++
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359 (451)
T ss_dssp TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 455899999999999999999999999999999999 99998888877666 666665555 3677788888899999
Q ss_pred hhhhccchhhhhhccCCccccccchhhhhHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhhhc
Q 041620 83 IGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAI-GLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.+...+....++.|.+|+++|++++++++....+ |..++|.+.+ ...+..+|+..|++.++..++..+...+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g--~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG--YTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999 9999999988 333455789999888777766665554443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.60 E-value=3.4e-15 Score=112.84 Aligned_cols=140 Identities=11% Similarity=0.095 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhccchhhhh
Q 041620 15 SQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQSVPLYL 94 (172)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 94 (172)
..+.+...+...++.+++.++.++++||+|||+++..+..+.++..+...+.++.+.+.+..++.+++.+...+....+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777788889999999999999999999988888887776676777777777777778887776667778899
Q ss_pred hccCCccccccchhh-hhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 95 SEMTTPKYRGTFNIG-FQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 95 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.|.+|++.|++..++ ++....+|..++|.+.+ ...+..+++..|.+.++..++..+....
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G--~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG--NMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH--THHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH--HHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 58888899999999988 3333457888888877776665554433
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.53 E-value=2.7e-14 Score=109.59 Aligned_cols=145 Identities=10% Similarity=-0.093 Sum_probs=108.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-----HHHHHHHHhhhhhhcc---------chhHHHHHHH
Q 041620 11 SKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSIL-----IGGVAFLAGSALGVCA---------FNIYMLIFGR 76 (172)
Q Consensus 11 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 76 (172)
.+.+..+.++..+...++..++.++.+++.||+|||+... .+.++.+++....... .+.+...+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4aps_A 314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW 393 (491)
T ss_dssp CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 3444455566677778888899999999999999986654 6666666666655543 2667777888
Q ss_pred HHHhhhhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhhhHHHHHHHHhhhh
Q 041620 77 LLLGVGIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 77 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
++.|++.+...+....++.|.+|+++|++++++++....+|..++|.+.+ ...+ .++...|...+...++..+..++
T Consensus 394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT--LYNA-KSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG--GGGG-SSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999999999999999999999999999999999987 2222 24556676666666655544444
Q ss_pred hc
Q 041620 157 WW 158 (172)
Q Consensus 157 ~~ 158 (172)
..
T Consensus 471 ~~ 472 (491)
T 4aps_A 471 LS 472 (491)
T ss_dssp C-
T ss_pred HH
Confidence 33
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.52 E-value=4e-14 Score=106.92 Aligned_cols=135 Identities=7% Similarity=-0.073 Sum_probs=109.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHhhhhhhhcc
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCAFNIYMLIFGRLLLGVGIGFGNQ 88 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 88 (172)
+.+|.++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.... .++.|++.+...+
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~ 366 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYP 366 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999988888888777777665444 4888899988899
Q ss_pred chhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHhhhHHHH
Q 041620 89 SVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWG-WRISLAMAAAPAS 148 (172)
Q Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~ 148 (172)
....+..|.+|++ |+++.++.. ...+|..++|.+.+ ...+..+ ++..|.+.++..+
T Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g--~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMG--FVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHH--HHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHH--HHHHHhcchHHHHHHHHHHHH
Confidence 9999999999866 788888766 55689999999988 2233345 7777776544433
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.52 E-value=7.9e-16 Score=116.32 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=97.5
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhh---hccchh-HHHHHHHHHHhhhh
Q 041620 8 SNYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALG---VCAFNI-YMLIFGRLLLGVGI 83 (172)
Q Consensus 8 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~g~~~ 83 (172)
++++|.|+++.+++.+...++..+++++.|+++||+|||++++.+..+..+..... .+.+.. ......+.+.+++.
T Consensus 35 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (417)
T 2cfq_A 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114 (417)
T ss_dssp HTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSST
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999998887765432211 122111 11234455555555
Q ss_pred hhhccchhhhhhccCCc--cccccchhhhhHHHHHHHHHHHHHHh-hhcCCCCcchHHHHHhhhHHHHHHHHh
Q 041620 84 GFGNQSVPLYLSEMTTP--KYRGTFNIGFQLCAAIGLLSANLLNC-TQKIKGGWGWRISLAMAAAPASILTIG 153 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~ 153 (172)
+...+.......++.++ ++|+...+..+....+|..++|.+++ +. + .+|+..|++.++..++..+.
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~---~-~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF---T-INNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH---H-HCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH---H-hchhHHHHHHHHHHHHHHHH
Confidence 54444444444444433 45677778877777889999999887 43 1 36899998876665444433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.34 E-value=5.9e-12 Score=96.46 Aligned_cols=150 Identities=11% Similarity=-0.038 Sum_probs=100.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHhhhhhhcc----chhHHHHHHHHHHhhh-hh
Q 041620 10 YSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVAFLAGSALGVCA----FNIYMLIFGRLLLGVG-IG 84 (172)
Q Consensus 10 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~-~~ 84 (172)
..+.+............+...++.++.+++.||+|||+.++.+.....++.+..... .+.+...+...+...+ ..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Confidence 345566666666777778889999999999999999999998888777766554432 1222222222222222 22
Q ss_pred hhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh-hhc---CCCCcchHHHHHhhhHHHHHHHHhhhhhcc
Q 041620 85 FGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC-TQK---IKGGWGWRISLAMAAAPASILTIGASDWWY 159 (172)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 159 (172)
...+....+.+|.+|++.|++++++.+....++..+++.+.. +.. .....++...|++.+..+++..+..+++.|
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 234567789999999999999999999888888888877654 211 111123445677767776666665544443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.15 E-value=1.6e-10 Score=89.36 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh----hhhch----hHHHHHHHHHHHHhhhhhhcc---------chhHHHHHHHHHHhh
Q 041620 19 TTFISSLYITGILASLIASSVT----RALGR----KVSILIGGVAFLAGSALGVCA---------FNIYMLIFGRLLLGV 81 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~----d~~gr----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~ 81 (172)
+.......++..+..++.+++. ||.|+ ++.+..+.++.+++.+..... .+.+.+.+..++.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 3333333445555666666654 45443 245666777777776665553 366777788899999
Q ss_pred hhhhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHh
Q 041620 82 GIGFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNC 126 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (172)
+.+...+....+..|..|+++|++++++++....+|..++|.+.+
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g 462 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV 462 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=5.7e-12 Score=93.49 Aligned_cols=130 Identities=14% Similarity=0.059 Sum_probs=99.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHhhhhhhc----cchhHHHHHHHHHHhhhh
Q 041620 9 NYSKFDSQLLTTFISSLYITGILASLIASSVTRALGRKVSILIGGVA-FLAGSALGVC----AFNIYMLIFGRLLLGVGI 83 (172)
Q Consensus 9 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~l~g~~~ 83 (172)
+++|.++.+.+...+...++..++.++.+++.||++++ +..+... ...+...... .++.+.+.+..++.|++.
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 305 (375)
T 2gfp_A 228 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGA 305 (375)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999983 2333333 3333222222 136677778889999999
Q ss_pred hhhccchhhhhhccCCccccccchhhhhHHHHHHHHHHHHHHhhhcCCCCcchHHHHHhh
Q 041620 84 GFGNQSVPLYLSEMTTPKYRGTFNIGFQLCAAIGLLSANLLNCTQKIKGGWGWRISLAMA 143 (172)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~w~~~~~~~ 143 (172)
+...+....+..|..| |+|+++.++.+....+|..++|.+.+ ...+..+++..+...
T Consensus 306 ~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g--~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 306 GMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA--MLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT--HHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH--HHhcCCcccHHHHHH
Confidence 9999999999999998 89999999999999999999988877 222334566666553
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=83.82 E-value=0.56 Score=19.42 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=11.5
Q ss_pred hhhhhhhhhchhHH
Q 041620 35 IASSVTRALGRKVS 48 (172)
Q Consensus 35 ~~g~l~d~~gr~~~ 48 (172)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=54.93 E-value=30 Score=23.13 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchh
Q 041620 23 SSLYITGILASLIASSVTRALGRK 46 (172)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~gr~ 46 (172)
..+.+|..+++.+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 456678888899999999987643
No 17
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=43.71 E-value=17 Score=26.38 Aligned_cols=22 Identities=5% Similarity=-0.139 Sum_probs=10.5
Q ss_pred chHHHHHhhhHHHHHHHHhhhh
Q 041620 135 GWRISLAMAAAPASILTIGASD 156 (172)
Q Consensus 135 ~w~~~~~~~~~~~~~~~~~~~~ 156 (172)
.|++.|++..+++++.++..++
T Consensus 310 ~~~~gy~~~l~~m~~~~~~~~~ 331 (339)
T 4ev6_A 310 NNPQGFWLVMALMVVIIMIFVY 331 (339)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHH
Confidence 4666665544444444433333
No 18
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=32.64 E-value=19 Score=26.44 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=9.1
Q ss_pred chHHHHHhhhHHHHHHHHhhhhhc
Q 041620 135 GWRISLAMAAAPASILTIGASDWW 158 (172)
Q Consensus 135 ~w~~~~~~~~~~~~~~~~~~~~~~ 158 (172)
.|++.|++..+++++..+..++++
T Consensus 334 ~~~~Gy~~~l~~m~~i~~~~~~~F 357 (363)
T 2iub_A 334 RWKWGYPVVLAVMGVIAVIMVVYF 357 (363)
T ss_dssp -----CHHHHHHHHHHHHHHHTTT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 577776655554444444444333
No 19
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=26.08 E-value=8.6 Score=16.49 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=7.7
Q ss_pred hhhhhchhHHH
Q 041620 39 VTRALGRKVSI 49 (172)
Q Consensus 39 l~d~~gr~~~~ 49 (172)
-+||-|||+.+
T Consensus 8 ~~~RtGRRNAl 18 (26)
T 1cmk_I 8 ASGRTGRRNAI 18 (26)
T ss_pred hcCcccccccc
Confidence 36788888753
Done!