BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041621
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana
GN=ROPGEF2 PE=1 SV=2
Length = 485
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 317/488 (64%), Positives = 372/488 (76%), Gaps = 40/488 (8%)
Query: 1 MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSA--FSD 58
MEN N +E D G SP ID ND S SETPVYSTMS DSFAYHRT SETS FSD
Sbjct: 1 MENLPNHEENDDVGYHQSPGPIDPNDH-SASETPVYSTMSTDSFAYHRTCSETSGGGFSD 59
Query: 59 PIDDNSS-CSEPSPSNWLV-------SRSGQPALGRPEMRQQKTVVDKNLDDQESMDLEL 110
ID+ SS C+E SPS+W V + S P + +++ + D++L QE + EL
Sbjct: 60 QIDETSSFCTEASPSDWPVLTESNNSASSNFPTVF--DLKHNQIETDEHLAVQEISEPEL 117
Query: 111 ELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKR 170
E MKERF+KLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL PL+ E+K WKR
Sbjct: 118 ETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTWKR 177
Query: 171 EMDCLLSVCDYIVEFVSESQNLRDGREVE-------------------------DILESF 205
EM+CLLSVCDYI EF+ +SQNL +G VE + L+SF
Sbjct: 178 EMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALDSF 237
Query: 206 QDTEFWYAEQGSMSSNSTRS--GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHK 263
Q TEFWYAE+GS+S STRS GSFR+VIVQRKEEKWWLP+P VP GLSEK+RK L+ K
Sbjct: 238 QKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQLKSK 297
Query: 264 RDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLL 323
R+ NQIHKAAMAINS+IL EM+IPDSYMA LPKSGKA GD IYR+M ++ +FSP+ LL
Sbjct: 298 RESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGRFSPEKLL 357
Query: 324 DCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAAR 383
D L I SEHEAL+LAD VEASMYTWRRKAC+++SKSSW+MVKDLMS T+RSDKN++LA R
Sbjct: 358 DRLKIVSEHEALQLADRVEASMYTWRRKACLNNSKSSWNMVKDLMSITERSDKNYVLAER 417
Query: 384 AESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFV 443
AESLLF LKQRYPEL+QTSLD CKI CN+DVG+AVLESYSRVLEGLAFN VAW++DVL+V
Sbjct: 418 AESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYV 477
Query: 444 DRSVRNQD 451
D+++R ++
Sbjct: 478 DKTMRGEE 485
>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana
GN=ROPGEF1 PE=1 SV=2
Length = 548
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/381 (51%), Positives = 257/381 (67%), Gaps = 38/381 (9%)
Query: 101 DDQESMDL-ELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAP 159
D Q DL E+E+MKERFAKLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+ RL P
Sbjct: 81 DKQPDNDLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEP 140
Query: 160 LKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVE-------------------- 199
L P+KKA+W+RE++ LL V D IVE + Q G E
Sbjct: 141 LAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKL 200
Query: 200 -----DILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSE 254
D+L++F DTEFWY ++G + + + S+ R+E+KWWLP P VPP GLSE
Sbjct: 201 DAMLIDMLDAFSDTEFWYTDRGIVLGDCDKD-SYNSPASVRQEDKWWLPCPKVPPNGLSE 259
Query: 255 KSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTT 314
++RK L+ RD ANQI KAA+AINS +LAEMEIPD Y+ LPKSGK CLG+ IY+Y+ T
Sbjct: 260 EARKKLQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYL-TA 318
Query: 315 EKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSK------SSW-DMVKDL 367
KFSP+ LLDCL ++SEH+ LE+A+ +EA+++ WR+K H K SSW VK L
Sbjct: 319 NKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQAKLKLSSWGGKVKGL 378
Query: 368 MSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLE 427
+++ +R+D L RAE+LL L+ R+P L QT+LD KIQ N+DVGQ++LESYSRV+E
Sbjct: 379 VNDNERND---FLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVME 435
Query: 428 GLAFNTVAWVEDVLFVDRSVR 448
+AFN A ++DVL+VD ++R
Sbjct: 436 SMAFNITARIDDVLYVDDAMR 456
>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana
GN=ROPGEF8 PE=1 SV=1
Length = 523
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/367 (45%), Positives = 233/367 (63%), Gaps = 42/367 (11%)
Query: 104 ESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPE 163
E ++E+MK+RFAKLLLGEDMSG GKGV +A+ +SNAITNL A++FG+ +L P+ +
Sbjct: 80 ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQD 139
Query: 164 KKALWKREMDCLLSVCDYIVEFVSESQNLRDG---------------------REVE--- 199
++A WK+E+D LLSV D+IVEFV Q +DG R+++
Sbjct: 140 RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAML 199
Query: 200 -DILESFQD-TEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSR 257
D L++F+ EFWY + S R+ R +KWWLP VPPGGLSE SR
Sbjct: 200 IDTLDNFRGHNEFWYVSRDSEEGQQARN--------DRTNDKWWLPPVKVPPGGLSEPSR 251
Query: 258 KHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKF 317
+ L ++D Q+ KAAMAIN+ +L+EMEIP+SY+ +LPK+G+A LGD IY+ + T E F
Sbjct: 252 RMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSI-TEEWF 310
Query: 318 SPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKN 377
P+ L L +++EH+ L+L + +EAS+ W+RK +KSSW L +K
Sbjct: 311 DPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSL-------EKR 363
Query: 378 HLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWV 437
L RAE++L LKQ++P L Q+SLD KIQ N+DVGQAVLESYSR+LE LA+ ++ +
Sbjct: 364 ELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRI 423
Query: 438 EDVLFVD 444
EDVL+ D
Sbjct: 424 EDVLYTD 430
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,930,821
Number of Sequences: 539616
Number of extensions: 6578163
Number of successful extensions: 22704
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 22413
Number of HSP's gapped (non-prelim): 309
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)