Query 041621
Match_columns 452
No_of_seqs 87 out of 112
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 15:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041621.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041621hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 43.0 7 0.00051 38.0 3.4 28 138-165 579-611 (638)
2 d1t3qb2 d.133.1.1 (B:166-786) 39.3 9.9 0.00072 36.4 3.8 36 134-171 583-619 (621)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 36.0 12 0.00088 27.3 3.0 35 384-418 9-43 (59)
4 d1mn3a_ a.5.2.4 (A:) Vacuolar 31.5 25 0.0019 25.1 4.1 34 385-418 13-46 (54)
5 d1ffvb2 d.133.1.1 (B:147-803) 28.6 24 0.0017 34.0 4.6 38 133-171 615-652 (657)
6 d1uvqa2 d.19.1.1 (A:2-84) Clas 26.9 12 0.00084 29.1 1.6 44 178-245 3-50 (83)
7 d2ia7a1 d.373.1.1 (A:23-133) U 25.6 23 0.0016 26.9 3.1 38 136-173 8-57 (111)
8 d1n62b2 d.133.1.1 (B:147-809) 24.4 30 0.0022 33.2 4.4 44 129-173 611-660 (663)
9 d1rkba_ c.37.1.1 (A:) Adenylat 22.1 6.2 0.00045 29.4 -0.9 39 285-324 2-40 (173)
10 d1rm6a2 d.133.1.1 (A:134-769) 21.3 22 0.0016 34.1 2.7 32 133-168 597-628 (636)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=43.00 E-value=7 Score=38.03 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhhc----cccc-cCCChhHH
Q 041621 138 TISNAITNLYATVFGQ----NLRL-APLKPEKK 165 (452)
Q Consensus 138 AiSNAITNL~AtVFGe----lwrL-EPl~~ekK 165 (452)
||.|||-|....-|.. .+.+ =||.|||=
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPerV 611 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEKI 611 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHHH
Confidence 8999999998888873 3444 49999973
No 2
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=39.33 E-value=9.9 Score=36.36 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHhhhh-ccccccCCChhHHHhhhhh
Q 041621 134 CTAVTISNAITNLYATVFG-QNLRLAPLKPEKKALWKRE 171 (452)
Q Consensus 134 ~tALAiSNAITNL~AtVFG-elwrLEPl~~ekK~~WrRE 171 (452)
++|=||.|||.|-... +| ...+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 4566999999987643 33 34444 9999986555443
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.00 E-value=12 Score=27.26 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhCCCCCcchhhhhhhhhchhhHHHH
Q 041621 384 AESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAV 418 (452)
Q Consensus 384 AEtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI 418 (452)
+|..+..||.-||++-...+..-=+..|-+|+.||
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~ai 43 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 35568999999999987666655555555555544
No 4
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.51 E-value=25 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhhchhhHHHH
Q 041621 385 ESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAV 418 (452)
Q Consensus 385 EtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI 418 (452)
+..+..||.-||++....+..-=...|-+||.||
T Consensus 13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~ai 46 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCV 46 (54)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4578999999999988777766666666666665
No 5
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=28.56 E-value=24 Score=34.00 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccccCCChhHHHhhhhh
Q 041621 133 VCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKRE 171 (452)
Q Consensus 133 V~tALAiSNAITNL~AtVFGelwrLEPl~~ekK~~WrRE 171 (452)
+++|=||.|||-|-... .|--.+==||.|||=-..-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 34677899999987432 465444459999987666555
No 6
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=26.88 E-value=12 Score=29.10 Aligned_cols=44 Identities=27% Similarity=0.439 Sum_probs=30.8
Q ss_pred ccCee----EEeeecccccCCCcchhHhhhccCCCeeEeeeCCCCCCCCCCCCCcccccccccCccccccCC
Q 041621 178 VCDYI----VEFVSESQNLRDGREVEDILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVP 245 (452)
Q Consensus 178 V~D~I----VElvPs~Q~~~dG~~~Ee~LDsf~~tEFWYv~~g~~~~~~~~s~s~r~~~~~R~eeKWWLP~p 245 (452)
|+||+ ++|+- +..|+| |.+=.|-..|-||||=. +++--||||.-
T Consensus 3 ~adhv~~yg~~~yq--s~~psG----ey~~~fDGdE~fyvDl~------------------kKetVw~lPeF 50 (83)
T d1uvqa2 3 VADHVASCGVNLYQ--FYGPSG----QYTHEFDGDEQFYVDLE------------------RKETAWRWPEF 50 (83)
T ss_dssp CCSEEEEEEEEEEE--TTTTEE----EEEEEETTEEEEEEETT------------------TTEEECSSGGG
T ss_pred ccceeeeccceEEE--ecCCCc----cEeeccCCcEEEEEEcc------------------CCeEEEeCCCc
Confidence 67887 44543 346677 44556778999999954 46778999964
No 7
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=25.65 E-value=23 Score=26.95 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhhhc----------cccc--cCCChhHHHhhhhhcc
Q 041621 136 AVTISNAITNLYATVFGQ----------NLRL--APLKPEKKALWKREMD 173 (452)
Q Consensus 136 ALAiSNAITNL~AtVFGe----------lwrL--EPl~~ekK~~WrREmd 173 (452)
.=+|-++|-||--|-+|| +|.| ||+.+..+...++++.
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I~ 57 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEVK 57 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHHH
Confidence 347889999999999999 8888 9999999999999883
No 8
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=24.41 E-value=30 Score=33.25 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=34.0
Q ss_pred CCCch------hhHHHHHHHHHHHHHhhhhccccccCCChhHHHhhhhhcc
Q 041621 129 SGKGV------CTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMD 173 (452)
Q Consensus 129 ggKGV------~tALAiSNAITNL~AtVFGelwrLEPl~~ekK~~WrREmd 173 (452)
|.||| ++|=||.|||-|-.+ .+|--.+=-||.|||=-+.-+|+.
T Consensus 611 GakGvGE~~~~~~~~Ai~nAI~~A~~-~~G~r~~~lP~tpe~v~~~~~~~~ 660 (663)
T d1n62b2 611 GAKGVGESPHVGGVPCFSNAVNDAYA-FLNAGHIQMPHDAWRLWKVGEQLG 660 (663)
T ss_dssp SBCCCTTHHHHHHHHHHHHHHHHHHH-TTTCCCCCSCCCHHHHHHHHHHTT
T ss_pred CceecccccccchHHHHHHHHHHHHH-hcCCccccCCCCHHHHHHHHHHcC
Confidence 45665 477899999998764 578777777999999866668775
No 9
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=22.14 E-value=6.2 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCCchHHHhhccccCccchhHHHHHhhccCCCCChhhHhh
Q 041621 285 MEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLD 324 (452)
Q Consensus 285 MeIPe~y~esLPKnGrasLGD~iYr~i~t~e~Fspe~lL~ 324 (452)
|-+|-..+--.|-+||++++..|-+.+ .-..++.++++.
T Consensus 2 m~~~~I~i~G~pGsGKTTia~~La~~l-~~~~i~~~~~~~ 40 (173)
T d1rkba_ 2 MLLPNILLTGTPGVGKTTLGKELASKS-GLKYINVGDLAR 40 (173)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH-CCcEEechHHHH
Confidence 567777788899999999999998877 555666666554
No 10
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=21.27 E-value=22 Score=34.12 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhccccccCCChhHHHhh
Q 041621 133 VCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALW 168 (452)
Q Consensus 133 V~tALAiSNAITNL~AtVFGelwrLEPl~~ekK~~W 168 (452)
+++|-||.|||-|.. |.-.+==|+.|||=-..
T Consensus 597 ~~~~~Ai~nAI~~A~----G~r~~~lP~tpe~v~~a 628 (636)
T d1rm6a2 597 AGFLPAIHEAVYEAV----GVRATDFPLSPDRITEL 628 (636)
T ss_dssp TTHHHHHHHHHHHHH----SCCCCEESCCHHHHHHH
T ss_pred ccHHHHHHHHHHHhH----CCCcCcCCCCHHHHHHH
Confidence 357889999999863 65444449999985443
Done!