Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>041622
MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKSQKPIRSWDMEETDFRAEY
RSISCELRALARMVQDEFGTNDTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLKRK
KSEACSGEKTPYNLGVTVEPAKRRDSKKLESLRKSVIAAYSVERNEPRYMLRSMSKENKK
PPLPLNSSAMATTEKKTVSRRAGKI

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041622
        (205 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2162266 - symbol:AT5G42330 "AT5G42330" species...   449  1.9e-42   1


>TAIR|locus:2162266 [details] [associations]
            symbol:AT5G42330 "AT5G42330" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:BT014943
            EMBL:BT015393 EMBL:AK176328 IPI:IPI00519333 RefSeq:NP_199048.2
            UniGene:At.49817 EnsemblPlants:AT5G42330.1 GeneID:834239
            KEGG:ath:AT5G42330 TAIR:At5g42330 eggNOG:NOG272651
            HOGENOM:HOG000005693 InParanoid:Q6GKX1 OMA:FYEEYSA PhylomeDB:Q6GKX1
            ProtClustDB:CLSN2681084 ArrayExpress:Q6GKX1 Genevestigator:Q6GKX1
            Uniprot:Q6GKX1
        Length = 205

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 112/213 (52%), Positives = 142/213 (66%)

Query:     1 MSKMRTDRKPPLAKSPIRTRPRRVLRSNSTTLQTP-PGSLTKSQKPIRSWDMEETDFRAE 59
             MSKMR+  KPPL KSPIR R R+VL S+   LQTP PG L K  + +   D+     + +
Sbjct:     1 MSKMRSYLKPPLPKSPIRLRSRQVLHSS---LQTPSPGFL-KPGRRLSDVDLNPKP-QIK 55

Query:    60 YRSISCELRALARMVQDEFGTN-DTNKGGIGKSLCANSSPLFERGRFYEEYAARRNERLK 118
             Y SIS E+ ALA+MV+DEF    D  K    +SL  NS PLFERGRFYEEY+A+RNERL+
Sbjct:    56 YSSISSEIHALAKMVKDEFAEEEDRKKSSNLESLAKNSVPLFERGRFYEEYSAKRNERLR 115

Query:   119 RKKSE-ACSG---EKTPYNLGVTVEPA--KRRDSKKLESLRKSVIAAYSVERNE-PRYML 171
             RKK E A  G   + TPYNLGV  EP   KRR + K ES++K+V++   VE +  PRY L
Sbjct:   116 RKKGEEAVEGGVVKGTPYNLGVNHEPMTNKRRGTAKKESIKKTVVSM--VESSSIPRYSL 173

Query:   172 RSMSKENKKPPLPLNSSAMATTEKKTVSRRAGK 204
             RSM+KEN+KPPLPLN   +A +  K+V+ R G+
Sbjct:   174 RSMAKENRKPPLPLN---VAVSAMKSVTTRKGR 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.126   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       205   0.00096  111 3  11 23  0.41    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.50u 0.10s 21.60t   Elapsed:  00:00:01
  Total cpu time:  21.50u 0.10s 21.60t   Elapsed:  00:00:01
  Start:  Fri May 10 22:21:26 2013   End:  Fri May 10 22:21:27 2013

Back to top