BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041622
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8IS18|GEFE_DICDI Ras guanine nucleotide exchange factor E OS=Dictyostelium
           discoideum GN=gefE PE=2 SV=1
          Length = 1037

 Score = 32.3 bits (72), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 7/37 (18%)

Query: 6   TDRKPPLAKSPIRTRPRRVLRSNSTTLQTPPGSLTKS 42
           T  +PP+A       PR  +RSNS T  TPPGS T S
Sbjct: 203 TSNRPPVA-------PRSFIRSNSDTFITPPGSPTSS 232


>sp|Q58EL7|SKA3_DANRE Spindle and kinetochore-associated protein 3 OS=Danio rerio
          GN=ska3 PE=1 SV=2
          Length = 495

 Score = 30.8 bits (68), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 25 LRSNSTTLQTPPGSLTKSQKPIR-SWDMEETDFRAEYRSISCELRALARMVQDEFGTNDT 83
          LR  +  L+T   SL  + + ++   + EET  +A Y+ +  E+RAL R V+D+  T+DT
Sbjct: 11 LRKLTVYLETESSSLLHTSQNLKEDEEDEETGAQALYQ-LHSEVRALKRQVRDQVATHDT 69

Query: 84 NKGGI 88
          +   +
Sbjct: 70 SSADL 74


>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
           SV=1
          Length = 826

 Score = 30.8 bits (68), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 117 LKRKKSEACSGEKTPYNLGVTVEPAK-RRDSKKLESLRKSVIAAYSVERNEPRYMLRSMS 175
           LK+  S +   ++ P NL +T+ P +  RD K ++ L K V    SV   EPR  +    
Sbjct: 4   LKKNGSSSRLQDRKPPNLSITIPPVEGERDPKLMQPLTKPVFQK-SVSLQEPRGHVAEGG 62

Query: 176 KENKKPPLPLNSSAMATTEKKT 197
             + +P     +S   + ++ T
Sbjct: 63  TADVRPGFKRQTSLSQSIKRGT 84


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.126    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,169,596
Number of Sequences: 539616
Number of extensions: 2899801
Number of successful extensions: 6246
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6228
Number of HSP's gapped (non-prelim): 36
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)