Query 041622
Match_columns 205
No_of_seqs 14 out of 16
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 15:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wb9a4 d.75.2.1 (A:2-116) DNA 26.2 2.7 0.0002 29.7 -2.1 17 94-110 24-40 (115)
2 d1ewqa4 d.75.2.1 (A:1-120) DNA 25.2 2.9 0.00021 29.5 -2.1 30 94-124 28-57 (120)
3 d1vpma_ d.38.1.1 (A:) Acyl-CoA 20.4 25 0.0018 24.8 2.3 21 101-121 134-154 (155)
4 d1h9aa2 d.81.1.5 (A:182-412,A: 13.6 31 0.0022 27.4 1.4 18 97-114 37-54 (290)
5 d3cx5h1 f.23.13.1 (H:2-94) Ubi 10.4 63 0.0046 22.5 2.0 18 105-122 65-84 (93)
6 d1zavu1 a.108.1.1 (U:1-30) Rib 7.9 1.1E+02 0.008 17.6 2.0 15 65-79 16-30 (30)
7 d1xu1r_ g.24.1.2 (R:) Tumor ne 6.8 26 0.0019 21.5 -1.2 9 100-108 6-14 (38)
8 d1sxje1 a.80.1.1 (E:256-354) R 6.6 57 0.0042 22.6 0.4 11 100-110 26-36 (99)
9 d2bv3a4 d.58.11.1 (A:404-478) 6.6 50 0.0036 21.1 0.0 13 114-126 60-72 (75)
10 d1x9ma2 e.8.1.1 (A:211-704) T7 6.0 91 0.0066 24.8 1.3 43 32-76 227-280 (494)
No 1
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
Probab=26.19 E-value=2.7 Score=29.68 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=14.4
Q ss_pred CCCccccccchhhHHHH
Q 041622 94 ANSSPLFERGRFYEEYA 110 (205)
Q Consensus 94 ~nSspLFeRGRfYd~YS 110 (205)
+++--||.-|.||+.|.
T Consensus 24 pd~ill~rvG~FYE~y~ 40 (115)
T d1wb9a4 24 PEILLFYRMGDFYTLFY 40 (115)
T ss_dssp TTSEEEEEETTEEEEEH
T ss_pred CCeEEEEEeCcchhhhh
Confidence 45678999999999995
No 2
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]}
Probab=25.18 E-value=2.9 Score=29.49 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=22.3
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhhcCcc
Q 041622 94 ANSSPLFERGRFYEEYAARRNERLKRKKSEA 124 (205)
Q Consensus 94 ~nSspLFeRGRfYd~YSARRNERLkRKkg~~ 124 (205)
.++-.||+-|.||+.|.. -++.+-+..|+.
T Consensus 28 ~d~Ivl~qvG~FYE~Y~~-Da~~~~~~l~i~ 57 (120)
T d1ewqa4 28 PDYLLLFQVGDFYECFGE-DAERLARALGLV 57 (120)
T ss_dssp TTSEEEEEETTEEEEEHH-HHHHHHHHHTCC
T ss_pred CCeEEEEEeCCEEEEccc-hHHHHHHHhCce
Confidence 457889999999999964 356666666644
No 3
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus halodurans [TaxId: 86665]}
Probab=20.43 E-value=25 Score=24.83 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=17.2
Q ss_pred ccchhhHHHHHHHHHHHhhhc
Q 041622 101 ERGRFYEEYAARRNERLKRKK 121 (205)
Q Consensus 101 eRGRfYd~YSARRNERLkRKk 121 (205)
|=-++|+++.+||.+|.+|+.
T Consensus 134 ee~~~~~~a~~r~~~r~~~~~ 154 (155)
T d1vpma_ 134 EEKRLYETAPARKENRKKRAA 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 335899999999999988763
No 4
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=13.64 E-value=31 Score=27.45 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.6
Q ss_pred ccccccchhhHHHHHHHH
Q 041622 97 SPLFERGRFYEEYAARRN 114 (205)
Q Consensus 97 spLFeRGRfYd~YSARRN 114 (205)
--+-.||.|||.|-|-|.
T Consensus 37 ~gvegR~~yyD~~GaiRD 54 (290)
T d1h9aa2 37 LGVEERAGYYDTAGALLD 54 (290)
T ss_dssp SCSGGGHHHHHHHHHHHH
T ss_pred CCccchhhhhhccchHHH
Confidence 345679999999999883
No 5
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.42 E-value=63 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.9
Q ss_pred hhHHH--HHHHHHHHhhhcC
Q 041622 105 FYEEY--AARRNERLKRKKS 122 (205)
Q Consensus 105 fYd~Y--SARRNERLkRKkg 122 (205)
+|-.| ...+||.|.+|.|
T Consensus 65 ~Y~iy~Wa~~~ne~l~sK~G 84 (93)
T d3cx5h1 65 YWYWWKNGNEYNEFLYSKAG 84 (93)
T ss_dssp HHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHHHHcccC
Confidence 56666 6789999999999
No 6
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.89 E-value=1.1e+02 Score=17.63 Aligned_cols=15 Identities=40% Similarity=0.789 Sum_probs=12.4
Q ss_pred hHHHHHHHHhHhhhc
Q 041622 65 CELRALARMVQDEFG 79 (205)
Q Consensus 65 ~elRAlA~mV~dEf~ 79 (205)
.|+-.|.+|+.|-||
T Consensus 16 aelaelvk~ledkfg 30 (30)
T d1zavu1 16 SELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhcC
Confidence 477788899999887
No 7
>d1xu1r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 13B, TACI {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.83 E-value=26 Score=21.48 Aligned_cols=9 Identities=44% Similarity=1.073 Sum_probs=6.8
Q ss_pred cccchhhHH
Q 041622 100 FERGRFYEE 108 (205)
Q Consensus 100 FeRGRfYd~ 108 (205)
-|-|+|||.
T Consensus 6 keqG~YYD~ 14 (38)
T d1xu1r_ 6 KEQGKFYDH 14 (38)
T ss_dssp GGGTEEEET
T ss_pred HhhchHHHH
Confidence 367899985
No 8
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.62 E-value=57 Score=22.56 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=9.1
Q ss_pred cccchhhHHHH
Q 041622 100 FERGRFYEEYA 110 (205)
Q Consensus 100 FeRGRfYd~YS 110 (205)
-.||+|||+-+
T Consensus 26 ~iR~~lYeLL~ 36 (99)
T d1sxje1 26 ECRAVLYDLLA 36 (99)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 35999999975
No 9
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=6.56 E-value=50 Score=21.13 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=0.5
Q ss_pred HHHHhhhcCccCC
Q 041622 114 NERLKRKKSEACS 126 (205)
Q Consensus 114 NERLkRKkg~~v~ 126 (205)
-+||++++|+.|+
T Consensus 60 ~~rL~~~~~vev~ 72 (75)
T d2bv3a4 60 VDRLKREFKVDAN 72 (75)
T ss_dssp C------------
T ss_pred HHHHHHHHCCceE
Confidence 4788888887655
No 10
>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=6.00 E-value=91 Score=24.80 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=27.1
Q ss_pred cccCCCCCcccCCcccccCCCCc--c---------ccccccccchHHHHHHHHhHh
Q 041622 32 LQTPPGSLTKSQKPIRSWDMEET--D---------FRAEYRSISCELRALARMVQD 76 (205)
Q Consensus 32 lQTPPGsl~Ksqkp~rs~~~~~~--~---------LrPey~sis~elRAlA~mV~d 76 (205)
+|.-|..-+.-.+.+|+-|.++. + +.-||..| |+|.||.+..|
T Consensus 227 lqnip~~~~~~~~~~r~~f~~~~~~~~~~~~g~~l~~~D~sqi--ElRvlA~~~~~ 280 (494)
T d1x9ma2 227 LAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGL--ELRCLAHFMAR 280 (494)
T ss_dssp TTCCCCTTSTTHHHHHHTBSGGGSBCTTTCCBCEEEEEEETTH--HHHHHHHHHHH
T ss_pred cccCCcccccccccccccccccccccccCCCCeEEEEehhhcc--cHHHHHHHHHh
Confidence 67666433334456777776541 1 23388877 99999987754
Done!