BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041626
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 69.7 bits (169), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 61 WPPRSYTCSFCKREFRSAQALGGHMNVH 88
WPPRSYTCSFCKREFRSAQALGGHMNVH
Sbjct: 2 WPPRSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 36.2 bits (82), Expect = 0.013, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIKKW 122
P SY C+ C F + AL H+ RD A ++ P INNA S + W
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPM---------INNAIRSFLTAW 164
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 36.2 bits (82), Expect = 0.013, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 63 PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRISPPTPKDIIVNNNINNASPSEIKKW 122
P SY C+ C F + AL H+ RD A ++ P INNA S + W
Sbjct: 96 PSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPM---------INNAIRSFLTAW 146
>pdb|2RC4|A Chain A, Crystal Structure Of The Hat Domain Of The Human Moz
Protein
Length = 287
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 51 YGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHM 85
Y Y +S P+ Y C FC + +S L HM
Sbjct: 23 YSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHM 57
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 64 RSYTCSFCKREFRSAQALGGHMNVH 88
R Y C C ++F+ L GHM +H
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIH 60
>pdb|2OZU|A Chain A, Crystal Structure Of Human Myst Histone
Acetyltransferase 3 In Complex With Acetylcoenzyme A
Length = 284
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 51 YGEEYLSGFSWPPRSYTCSFCKREFRSAQALGGHM 85
Y Y +S P+ Y C FC + +S L HM
Sbjct: 27 YSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHM 61
>pdb|3LS3|A Chain A, Padron0.9-On (Fluorescent State)
pdb|3LS3|B Chain B, Padron0.9-On (Fluorescent State)
pdb|3LS3|C Chain C, Padron0.9-On (Fluorescent State)
pdb|3LS3|D Chain D, Padron0.9-On (Fluorescent State)
pdb|3LSA|A Chain A, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|B Chain B, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|C Chain C, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|D Chain D, Padron0.9-Off (Non-Fluorescent State)
Length = 235
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 121 KWSALTGALRPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGGEIVRL------DLEI 174
KW T L +D V K++ +++ + E GG D FK + K ++V+L D I
Sbjct: 149 KWELSTEKLYVRDGVLKSDGNYALSLEGGGHYRCD--FKTTYKAKKVVQLPDYHSVDHHI 206
Query: 175 GVISDSKEDLDLELR 189
+IS K+ ++ L
Sbjct: 207 EIISHDKDYSNVNLH 221
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 102 PKDIIVNNNINNASPSEIKKWSALTGALRP 131
P+ ++N NI +P IKKW+ T + P
Sbjct: 48 PETNLLNRNIQQLTPQVIKKWNVDTILMSP 77
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 66 YTCSFCKREFRSAQALGGHMNVHRRDR 92
+TC +C + F+ +L H+ +H ++
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 64 RSYTCSFCKREFRSAQALGGHMNVHRRDR 92
+ Y C C+R+F AL H+ +H ++
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 64 RSYTCSFCKREFRSAQALGGHMNVH 88
+ Y C C FR Q L H+ +H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,443,496
Number of Sequences: 62578
Number of extensions: 212196
Number of successful extensions: 521
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 18
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)