Query 041627
Match_columns 204
No_of_seqs 281 out of 1152
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 15:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 2.6E-22 9E-27 158.4 18.3 184 3-187 286-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 3.8E-21 1.3E-25 150.0 9.3 167 5-173 39-212 (451)
3 2gfp_A EMRD, multidrug resista 99.8 6.1E-21 2.1E-25 145.8 7.2 169 4-173 10-180 (375)
4 3o7q_A L-fucose-proton symport 99.8 9.8E-20 3.4E-24 141.6 10.8 167 5-172 37-235 (438)
5 4aps_A DI-OR tripeptide H+ sym 99.8 2.4E-18 8.3E-23 135.7 13.9 162 4-166 23-195 (491)
6 2xut_A Proton/peptide symporte 99.7 3.3E-17 1.1E-21 130.3 13.9 160 4-164 22-195 (524)
7 4gc0_A D-xylose-proton symport 99.7 1.8E-17 6.1E-22 130.7 9.1 157 14-172 32-224 (491)
8 1pw4_A Glycerol-3-phosphate tr 99.7 7E-17 2.4E-21 125.9 6.9 162 4-166 262-432 (451)
9 3o7q_A L-fucose-proton symport 99.6 2.7E-14 9.2E-19 110.9 14.3 152 4-158 268-423 (438)
10 2cfq_A Lactose permease; trans 99.5 7.9E-15 2.7E-19 113.7 7.4 161 11-172 237-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.5 1E-13 3.5E-18 109.3 9.0 163 8-172 297-476 (491)
12 2cfq_A Lactose permease; trans 99.4 1.4E-14 4.9E-19 112.2 -0.3 154 5-160 18-180 (417)
13 2gfp_A EMRD, multidrug resista 99.0 2.2E-11 7.4E-16 92.8 -0.5 145 4-152 209-361 (375)
14 2xut_A Proton/peptide symporte 98.9 3.6E-10 1.2E-14 89.8 3.6 130 44-173 349-508 (524)
15 2g9p_A Antimicrobial peptide l 75.7 0.85 2.9E-05 18.9 0.6 14 49-62 2-15 (26)
16 3iyz_A Aquaporin-4; water tran 54.5 19 0.00066 26.9 4.6 14 144-157 244-257 (340)
17 2b6o_A Aquaporin-0, lens fiber 41.8 34 0.0012 24.4 4.2 15 145-159 199-213 (263)
18 2zz9_A Aquaporin-4; water tran 40.8 31 0.0011 25.3 3.9 12 145-156 206-217 (301)
19 1cmk_I CAMP-dependent protein 33.8 8.3 0.00029 16.7 -0.1 10 54-63 9-18 (26)
20 2dw3_A Intrinsic membrane prot 25.9 94 0.0032 17.4 4.5 9 164-172 50-58 (77)
21 1j4n_A Aquaporin 1; membrane p 20.3 1.3E+02 0.0044 21.6 4.0 13 145-157 209-221 (271)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.90 E-value=2.6e-22 Score=158.36 Aligned_cols=184 Identities=32% Similarity=0.613 Sum_probs=143.6
Q ss_pred hhhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH-
Q 041627 3 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF- 81 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~- 81 (204)
.++++.+++.+..|.|.+.++.+.+...... .+........++.++.+++.||+|||+.++.+.....++.+.+....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIALL-QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchhh-HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 4677888899999999999998888776444 44444444899999999999999999999888887777766655432
Q ss_pred ------HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH------hhCcchh
Q 041627 82 ------ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVAD------LVGTGST 149 (204)
Q Consensus 82 ------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~ 149 (204)
............+..+..++.+.+.+|++|++.|+++.|+....+++++++++.+.+.+.+ ..++...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~ 444 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS 444 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 2233333444455666778889999999999999999999999999999999988876543 3456677
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHhchh
Q 041627 150 FLILAGIAVLAVVFVILFVPETQGLTFLEVEQRWKERA 187 (204)
Q Consensus 150 ~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 187 (204)
+++++++++++.++.++++||||+++.||.++.++++.
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 88888888888888889999999999999887765543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.84 E-value=3.8e-21 Score=150.03 Aligned_cols=167 Identities=12% Similarity=0.077 Sum_probs=144.0
Q ss_pred hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH----H
Q 041627 5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW----A 80 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----~ 80 (204)
......+.+..++|.+.+++ .++.+.++..+....+ ..++.++.|+++||+|||+++..+..+..++.+...+ .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~-~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 116 (451)
T 1pw4_A 39 AYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIA-YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116 (451)
T ss_dssp HHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHH-HHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34445556778889998889 9999988888888777 8999999999999999999999999999988888777 5
Q ss_pred H--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHH
Q 041627 81 F--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIA 157 (204)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 157 (204)
. +.+.+.+++.+.+.+...+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..+ |++.|++.+++.
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~ 196 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4 5677778888888888888899999999999999999999999999999999999999888898 999999988888
Q ss_pred HHHHHHHHhhccCCCC
Q 041627 158 VLAVVFVILFVPETQG 173 (204)
Q Consensus 158 ~i~~~~~~~~~~e~~~ 173 (204)
++..++..+.+||+++
T Consensus 197 ~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 197 ILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHCCCSST
T ss_pred HHHHHHHHhhccCCHh
Confidence 7776666677787643
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.83 E-value=6.1e-21 Score=145.80 Aligned_cols=169 Identities=9% Similarity=0.038 Sum_probs=143.5
Q ss_pred hhhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--
Q 041627 4 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF-- 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-- 81 (204)
+....+.....+..|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++........
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 88 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLT-YGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL 88 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHH-HHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence 44555667778888999999999999988888888777 899999999999999999999999988888887776655
Q ss_pred HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHH
Q 041627 82 ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAV 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 161 (204)
+.+...+++.+.+.+...+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..+|+..+++.+...++..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56667778888888888888899999999999999999999999999999999999998888899999988777776665
Q ss_pred HHHHhhccCCCC
Q 041627 162 VFVILFVPETQG 173 (204)
Q Consensus 162 ~~~~~~~~e~~~ 173 (204)
+...+..||+++
T Consensus 169 ~~~~~~~~~~~~ 180 (375)
T 2gfp_A 169 FSMARWMPETRP 180 (375)
T ss_dssp CCCCCSSCCCST
T ss_pred HHHHHHCcccCC
Confidence 545566777643
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.81 E-value=9.8e-20 Score=141.60 Aligned_cols=167 Identities=14% Similarity=0.065 Sum_probs=136.5
Q ss_pred hhhhhhhhHHhhhHHHHHHcCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH---HHHH
Q 041627 5 QQFTGINTVMYYSPTIVQMAGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL---SWAF 81 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~~ 81 (204)
......+...+..|.+.+++|.++.+.++..+..... ..++.++.|+++||+|||+.+..+..+..++.+.. ....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 115 (438)
T 3o7q_A 37 LWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFG-YFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHH-HHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444456777889999999999999999988888877 89999999999999999999999999998888777 3333
Q ss_pred --HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH-HhhC-------------
Q 041627 82 --ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVA-DLVG------------- 145 (204)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~------------- 145 (204)
+.+.+.+++.+.+.+...+....+++|++|+++|+++.++......+|..+++.+.+.+. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE 195 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 667778888888888888889999999999999999999999999999999999999887 4444
Q ss_pred ------------cchhhhHHHHHHHHHHHHHHh-hccCCC
Q 041627 146 ------------TGSTFLILAGIAVLAVVFVIL-FVPETQ 172 (204)
Q Consensus 146 ------------~~~~~~~~~~~~~i~~~~~~~-~~~e~~ 172 (204)
|++.+++.+.+..+..+...+ ..||++
T Consensus 196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 788887766666555443333 245543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.78 E-value=2.4e-18 Score=135.75 Aligned_cols=162 Identities=10% Similarity=0.064 Sum_probs=135.1
Q ss_pred hhhhhhhhhHHhhhHHHHHH------cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhcc-ccchHhHHHhhHHHHHHHHH
Q 041627 4 FQQFTGINTVMYYSPTIVQM------AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVL 76 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~ 76 (204)
+....+++.+..+++.+.++ +|.+..+.++..+....+ ..+++++.|+++|| +|||+++..+..+..++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASM-VYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 44556677777888887765 899999988888888777 89999999999999 89999999999888888777
Q ss_pred HHHHH--HHHHHHHHHHHHhcccccccchhhcccccCCcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhH
Q 041627 77 LSWAF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQY--RGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLI 152 (204)
Q Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 152 (204)
..... ..+.+.+++.+.+.+...+....+++|++|+++ |+++.++.+....+|..++|.+.+.+.+..+|++.|++
T Consensus 102 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 102 LALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp HHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66544 566777888888888888889999999999988 77788888899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHh
Q 041627 153 LAGIAVLAVVFVIL 166 (204)
Q Consensus 153 ~~~~~~i~~~~~~~ 166 (204)
.+...+++.+...+
T Consensus 182 ~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 182 AAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666665544443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.74 E-value=3.3e-17 Score=130.28 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=131.2
Q ss_pred hhhhhhhhhHHhhhHHHHH-HcC------CCchhhhhhHHHHHHHHHHHHHHHhhhhhccc-cchHhHHHhhHHHHHHHH
Q 041627 4 FQQFTGINTVMYYSPTIVQ-MAG------FQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLV 75 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~ 75 (204)
+....+++....++|.+.+ ++| .+..+.++..+..... ..++.++.|+++||+ |||+++..+.++..++.+
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~-~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIG-VYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHH-HHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4455667778888888765 478 8999988888888777 899999999999999 999999998888888777
Q ss_pred HHHHHH---HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhH---HHHHHHHHHHHHHHHHHHHHHhhCcchh
Q 041627 76 LLSWAF---ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGM---SATVNWISNLIVAQNFLTVADLVGTGST 149 (204)
Q Consensus 76 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 149 (204)
...... ..+.+.+++.+.+.+...+....++.|.+|+++|+++.+. .....++|..++|.+.+.+.+..+|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 766542 5566677788888888888889999999999999876666 8888999999999999998888899999
Q ss_pred hhHHHHHHHHHHHHH
Q 041627 150 FLILAGIAVLAVVFV 164 (204)
Q Consensus 150 ~~~~~~~~~i~~~~~ 164 (204)
|++.+.+.++..+..
T Consensus 181 f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 181 FGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 988777766554443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.72 E-value=1.8e-17 Score=130.73 Aligned_cols=157 Identities=16% Similarity=0.068 Sum_probs=115.5
Q ss_pred HhhhHHHHHHcCCC--------chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHH------
Q 041627 14 MYYSPTIVQMAGFQ--------SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW------ 79 (204)
Q Consensus 14 ~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~------ 79 (204)
...+|.+.++++.+ +.+.++..+....+ .++|++++|+++||+|||+++.++.++..++.+..++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G-~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~ 110 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIG-CIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFT 110 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTS
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34556666555322 23345566666666 7999999999999999999999999999988887763
Q ss_pred ------------HH--HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-
Q 041627 80 ------------AF--ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV- 144 (204)
Q Consensus 80 ------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 144 (204)
.. ..+++.|++.|.+.++..+..+.+++|..|+++|++..++.......|..+++..........
T Consensus 111 ~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (491)
T 4gc0_A 111 SINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD 190 (491)
T ss_dssp CSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc
Confidence 22 678888999999999999999999999999999999999999988888887777766554432
Q ss_pred -------CcchhhhHHHHHHHHHHHHHHhhccCCC
Q 041627 145 -------GTGSTFLILAGIAVLAVVFVILFVPETQ 172 (204)
Q Consensus 145 -------~~~~~~~~~~~~~~i~~~~~~~~~~e~~ 172 (204)
+|+..+...... .+..+...++.||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~peSp 224 (491)
T 4gc0_A 191 ASWLNTDGWRYMFASECIP-ALLFLMLLYTVPESP 224 (491)
T ss_dssp TTTTTTTHHHHHHHTTHHH-HHHHHHHGGGSCCCH
T ss_pred cccccchhhHHHhhhhhhh-hhhhhhhhhcCCCCh
Confidence 233333333333 333345566789973
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.67 E-value=7e-17 Score=125.87 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=126.4
Q ss_pred hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccc--cchHhHHHhhHHHH-HHHHHHHH
Q 041627 4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHF--GRKKLALSSLAGVI-ISLVLLSW 79 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~ 79 (204)
++...+.+.+..+.|.+.++ +|.++.+.+...+....+ ..++.++.|++.||+ |||+.+..+..+.. ++.+.+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA-GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 44556667888999999988 899998878777777666 899999999999999 99998877766555 44443332
Q ss_pred H---H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHhhCcchhhhHHH
Q 041627 80 A---F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWI-SNLIVAQNFLTVADLVGTGSTFLILA 154 (204)
Q Consensus 80 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (204)
. . ........+.+.+.....+....+..|.+|+++|+++.|+.+....+ ++.++|.+.+.+.+..+++..+++.+
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 420 (451)
T 1pw4_A 341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 420 (451)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 2 1 33444445556656666677778999999999999999999999999 99999999999999999988888877
Q ss_pred HHHHHHHHHHHh
Q 041627 155 GIAVLAVVFVIL 166 (204)
Q Consensus 155 ~~~~i~~~~~~~ 166 (204)
++.+++.+...+
T Consensus 421 ~~~~~~~~~~~~ 432 (451)
T 1pw4_A 421 GGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776555444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.59 E-value=2.7e-14 Score=110.90 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=116.5
Q ss_pred hhhhhhhhhHHhhhHHH-HHHc-CCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH
Q 041627 4 FQQFTGINTVMYYSPTI-VQMA-GFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~ 81 (204)
++.....+....+.|.+ .++. |.++.+.+...+....+ ..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC-FFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC
Confidence 34445566778899999 8875 99998878777776666 899999999999999999998888877776665554433
Q ss_pred -HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhC-cchhhhHHHHHHH
Q 041627 82 -ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVG-TGSTFLILAGIAV 158 (204)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 158 (204)
........+.+.+.+...+....+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| ++..+++.+...+
T Consensus 347 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 347 GHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22333345556666677788888889999976 888888877 667999999999999999998 8888776544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.55 E-value=7.9e-15 Score=113.70 Aligned_cols=161 Identities=10% Similarity=0.061 Sum_probs=106.5
Q ss_pred hhHHhhhHHHHHHc-CCC---chhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHHHHHH--HHH
Q 041627 11 NTVMYYSPTIVQMA-GFQ---SNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF--ISV 84 (204)
Q Consensus 11 ~~~~~~~~~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~ 84 (204)
+.+..+.|.+.++. +.. ....+...+..... ..++.++.|+++||+|||+.+..+..+..+......... ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELL-NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV 315 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34445567776653 221 22223333333333 678899999999999999988877766665544433221 222
Q ss_pred HHHHHHHHHhcccccccchhhcccccCCcchhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHHHHHHHHHH
Q 041627 85 IGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMS-ATVNWISNLIVAQNFLTVADLVGTGSTFLILAGIAVLAVVF 163 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 163 (204)
.....+.+.......+..+.+.+|.+|++.|+++.+.. +....+|+.++|.+.+.+.+..++...|.+.+++.+++.+.
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 22222233333333344568999999999999999984 77788999999999999988888777787777777777665
Q ss_pred HHhhccCCC
Q 041627 164 VILFVPETQ 172 (204)
Q Consensus 164 ~~~~~~e~~ 172 (204)
.++..||++
T Consensus 396 ~~~~~~~~~ 404 (417)
T 2cfq_A 396 SVFTLSGPG 404 (417)
T ss_dssp HTTSSCCSC
T ss_pred HHhhhcCCC
Confidence 555566654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.48 E-value=1e-13 Score=109.33 Aligned_cols=163 Identities=11% Similarity=0.002 Sum_probs=110.6
Q ss_pred hhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHH-----HhhHHHHHHHHHHHHH-
Q 041627 8 TGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAGVIISLVLLSWA- 80 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~- 80 (204)
..+.....+.|.+.++ .+.+..+.+......... ..++.++.+++.||+|||+... .+..+..++...+...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLF-IMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHH-HHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHH-HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777776 566545556666666555 7888999999999999987644 4555555554444332
Q ss_pred ---------H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhh
Q 041627 81 ---------F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTF 150 (204)
Q Consensus 81 ---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 150 (204)
. ........+.+.+.+...+....+..|..|++.|+++.|+.+....+|+.+++.+.+.+.+ .++...+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~ 454 (491)
T 4aps_A 376 ALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYF 454 (491)
T ss_dssp HHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHH
T ss_pred HhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHH
Confidence 1 3344455566666667778888999999999999999999999999999999998876644 4556677
Q ss_pred hHHHHHHHHHHHHHHhhccCCC
Q 041627 151 LILAGIAVLAVVFVILFVPETQ 172 (204)
Q Consensus 151 ~~~~~~~~i~~~~~~~~~~e~~ 172 (204)
...+.+.++..+..++..++.+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 455 SYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776666555555543
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.41 E-value=1.4e-14 Score=112.24 Aligned_cols=154 Identities=8% Similarity=0.031 Sum_probs=96.7
Q ss_pred hhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHHHHHHHHHH---HHH
Q 041627 5 QQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL---SWA 80 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~ 80 (204)
..+.++....+++|.++++ +|.++.+.+...+..... ..+++++.|+++||+|||+++..+..+..+..... ...
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~-~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLF-SLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHH-HHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667889988875 899999988888888777 89999999999999999999888776654422111 111
Q ss_pred HH---HHHHHHHHHHHhcccccccchhhcccccCC--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhHHHH
Q 041627 81 FI---SVIGLALYITFFAPGMGPVPWTVNSEVYRE--QYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLILAG 155 (204)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (204)
.. .......+.+...+...+.......+..++ ++|+...+.......+|..++|.+.+.+.+ .+|+..|++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~ 175 (417)
T 2cfq_A 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG 175 (417)
T ss_dssp HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 10 011111111111111112222333333332 355666777777778888899999888776 578888877655
Q ss_pred HHHHH
Q 041627 156 IAVLA 160 (204)
Q Consensus 156 ~~~i~ 160 (204)
..++.
T Consensus 176 ~~~~~ 180 (417)
T 2cfq_A 176 CALIL 180 (417)
T ss_dssp TTTTH
T ss_pred HHHHH
Confidence 54333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.02 E-value=2.2e-11 Score=92.79 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=102.1
Q ss_pred hhhhhhhhhHHhhhHHHHHH-cCCCchhhhhhHHHHHHHHHHHHHHHhhhhhccccchHhHHHhhHH-HHHHHH--HHHH
Q 041627 4 FQQFTGINTVMYYSPTIVQM-AGFQSNQLALLPSLVVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VIISLV--LLSW 79 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~-~~~~~~--~~~~ 79 (204)
+....+.+.+..+.|.+.++ +|.++.+.+...+....+ ..++.++.+++.||+|||.. .+... ...+.. ....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPA-AFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 34455667777888888776 788888877777766665 79999999999999988332 22222 111111 1111
Q ss_pred H---H-HHHHHHHHHHHHhcccccccchhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhH
Q 041627 80 A---F-ISVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLVGTGSTFLI 152 (204)
Q Consensus 80 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 152 (204)
. . +.......+.+.+.+...+....+..|..| ++|+++.|+.+....+++.+++.+.+.+.+..++...+..
T Consensus 286 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 286 FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 1 1 333344555566666777888899999998 8999999999999999999999999888777666544443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.94 E-value=3.6e-10 Score=89.78 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHHHHhhhhh----ccccch----HhHHHhhHHHHHHHHHHHHH----------H-HHHHHHHHHHHHhcccccccchh
Q 041627 44 AVGTIVGIYLI----DHFGRK----KLALSSLAGVIISLVLLSWA----------F-ISVIGLALYITFFAPGMGPVPWT 104 (204)
Q Consensus 44 ~~~~~~~g~l~----dr~grr----~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
.++.++.+++. ||.||| +.+..+..+..++.+.+... . +.......+.+.+.+...+....
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 428 (524)
T 2xut_A 349 MLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLE 428 (524)
T ss_dssp HHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555543 444332 34555555555555444331 1 33444555666666667788889
Q ss_pred hcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhh--Cc---------chhhhHHHHHHHHHHHHHHhhccCCCC
Q 041627 105 VNSEVYREQYRGICGGMSATVNWISNLIVAQNFLTVADLV--GT---------GSTFLILAGIAVLAVVFVILFVPETQG 173 (204)
Q Consensus 105 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~i~~~~~~~~~~e~~~ 173 (204)
+..|..|+++|+++.|+.+....+|+.+++.+.+.+.+.. +| +..+++.+++.+++.++.+++.++.++
T Consensus 429 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (524)
T 2xut_A 429 FAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQM 508 (524)
T ss_dssp THHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999998876532 12 122555666666665555455555543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=75.69 E-value=0.85 Score=18.94 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=11.1
Q ss_pred HhhhhhccccchHh
Q 041627 49 VGIYLIDHFGRKKL 62 (204)
Q Consensus 49 ~~g~l~dr~grr~~ 62 (204)
+.|.+..|+|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788899999864
No 16
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=54.55 E-value=19 Score=26.87 Aligned_cols=14 Identities=7% Similarity=-0.111 Sum_probs=6.3
Q ss_pred hCcchhhhHHHHHH
Q 041627 144 VGTGSTFLILAGIA 157 (204)
Q Consensus 144 ~~~~~~~~~~~~~~ 157 (204)
+++.|.+++.-.+.
T Consensus 244 w~~~WVywvgPiiG 257 (340)
T 3iyz_A 244 WENHWIYWVGPIIG 257 (340)
T ss_pred CCcEeehhHHHHHH
Confidence 33445555543333
No 17
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=41.83 E-value=34 Score=24.45 Aligned_cols=15 Identities=7% Similarity=-0.108 Sum_probs=6.6
Q ss_pred CcchhhhHHHHHHHH
Q 041627 145 GTGSTFLILAGIAVL 159 (204)
Q Consensus 145 ~~~~~~~~~~~~~~i 159 (204)
.+.|.+++.-.+..+
T Consensus 199 ~~~Wvy~vgP~~Ga~ 213 (263)
T 2b6o_A 199 TNHWVYWVGPVIGAG 213 (263)
T ss_dssp TTCTHHHHHHHHHHH
T ss_pred cceeHHHHHHHHHHH
Confidence 344555544443333
No 18
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=40.82 E-value=31 Score=25.27 Aligned_cols=12 Identities=8% Similarity=-0.072 Sum_probs=5.2
Q ss_pred CcchhhhHHHHH
Q 041627 145 GTGSTFLILAGI 156 (204)
Q Consensus 145 ~~~~~~~~~~~~ 156 (204)
++.|.+++.-.+
T Consensus 206 ~~~WVy~vgPii 217 (301)
T 2zz9_A 206 ENHWIYWVGPII 217 (301)
T ss_dssp TTTTHHHHHHHH
T ss_pred cceeeeeeHHHH
Confidence 344455543333
No 19
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=33.79 E-value=8.3 Score=16.65 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=7.4
Q ss_pred hccccchHhH
Q 041627 54 IDHFGRKKLA 63 (204)
Q Consensus 54 ~dr~grr~~~ 63 (204)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788988753
No 20
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=25.92 E-value=94 Score=17.43 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=5.2
Q ss_pred HHhhccCCC
Q 041627 164 VILFVPETQ 172 (204)
Q Consensus 164 ~~~~~~e~~ 172 (204)
+-..+||..
T Consensus 50 iG~~LPE~S 58 (77)
T 2dw3_A 50 VGRMLPIQE 58 (77)
T ss_dssp HHHCTTTTC
T ss_pred HHHhCchhc
Confidence 344678764
No 21
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=20.27 E-value=1.3e+02 Score=21.57 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=5.7
Q ss_pred CcchhhhHHHHHH
Q 041627 145 GTGSTFLILAGIA 157 (204)
Q Consensus 145 ~~~~~~~~~~~~~ 157 (204)
.+.|.+++.-.+.
T Consensus 209 ~~~wv~~vgP~~G 221 (271)
T 1j4n_A 209 QDHWIFWVGPFIG 221 (271)
T ss_dssp TTTTHHHHHHHHH
T ss_pred cceeHHHHHHHHH
Confidence 3445555433333
Done!