Query 041629
Match_columns 362
No_of_seqs 257 out of 608
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 99.9 3E-23 1E-27 223.5 27.6 225 82-333 350-576 (802)
2 2fy7_A Beta-1,4-galactosyltran 29.8 17 0.00059 33.8 1.3 69 61-131 177-268 (287)
3 3bcv_A Putative glycosyltransf 27.3 64 0.0022 27.4 4.6 37 34-72 18-54 (240)
4 1xhb_A Polypeptide N-acetylgal 26.6 62 0.0021 31.3 4.8 44 29-72 38-82 (472)
5 1qg8_A Protein (spore coat pol 25.4 41 0.0014 29.1 2.9 33 34-68 14-46 (255)
6 2ffu_A Ppgalnact-2, polypeptid 17.4 87 0.003 30.7 3.7 40 29-68 75-114 (501)
7 2d7i_A Polypeptide N-acetylgal 17.1 1.1E+02 0.0038 30.8 4.5 43 29-71 121-164 (570)
8 3ckj_A Putative uncharacterize 14.3 1.6E+02 0.0053 27.1 4.4 41 29-71 57-97 (329)
9 1fo8_A Alpha-1,3-mannosyl-glyc 10.5 2E+02 0.0069 27.3 3.9 33 29-63 11-43 (343)
10 3rlb_A THIT; S-component, ECF 8.9 4.1E+02 0.014 23.1 5.0 52 286-339 68-119 (192)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.92 E-value=3e-23 Score=223.55 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=160.2
Q ss_pred cccCCceeeecCccccccccCCCChhhhhHHHHHHhhhhHHHhhhhcCcccccccCCCc-hhhhhhhhhhhcchhHHHHH
Q 041629 82 PFCRKFNLMERNPRAYFSSSSSTSTHACCSEIKRWAIGLLEVAFSRYCPITFGIRTMGL-MGLAYAHYSFWPIWSIPIMV 160 (362)
Q Consensus 82 ~~~rGw~s~y~~p~~~f~GlaP~~l~~~l~QR~RWa~G~lQIf~sk~nPl~~g~~gL~l-QRL~Y~~~~~y~~~~l~~li 160 (362)
++++||++.|.+ ++...+.+|+++.++++||.||++|.+|+++ +++|++. +++++ ||++|+.+..+|+.++++++
T Consensus 350 l~~~G~ri~~~~-~~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~-~~~pl~~--~~l~~~~rl~~l~~~~~~~~~~~~li 425 (802)
T 4hg6_A 350 IHSRGWKSLYID-RAMIAGLQPETFASFIQQRGRWATGMMQMLL-LKNPLFR--RGLGIAQRLCYLNSMSFWFFPLVRMM 425 (802)
T ss_dssp HHTTTCCEEECC-CCCEEECCCCSHHHHHHHHHHHHHHHHHHHH-HSCTTSC--SSCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHcCCeEEEec-CCEEEecCCCCHHHHHHHHHHHHccHHHHHH-HhCcccc--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999975 5677899999999999999999999999987 5689874 89999 99999999999999999999
Q ss_pred HHHHHHHHHhcCCccccCCChhHHHHHH-HHHHHHHHHHHHHHHHhCCccccccccchhhhhhHHHHHHHHHHHHHHHHh
Q 041629 161 YAFLPQLALASGISIFPKISEPGFLLYL-FLFLGAYGQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKSL 239 (362)
Q Consensus 161 yll~P~l~Ll~Gi~i~~~~s~~~f~~f~-~l~~~~~~~~lle~~~~g~s~~~wwr~qr~w~i~~~~~~l~a~~~~llk~l 239 (362)
++++|++++++|+.++......++..++ +++....+ .... .+.....||. +.+ .....++.+..++..++
T Consensus 426 ~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~---~~~~-~~~~r~~~~~-~l~----~~~~~~~~~~a~l~~l~ 496 (802)
T 4hg6_A 426 FLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLV---QNAL-FARQRWPLVS-EVY----EVAQAPYLARAIVTTLL 496 (802)
T ss_dssp HHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHH---HHHH-HTTTSCTTHH-HHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHH---HHHH-hcCcHHHHHH-HHH----HHHHHHHHHHHHHHHHh
Confidence 9999999999999888764333222222 22111111 1122 2221112222 222 22222333444555667
Q ss_pred ccCCcceeeccCCccchhhhhhccccccccCCchhHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHH
Q 041629 240 GISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLN 319 (362)
Q Consensus 240 ~~~~~~F~VT~K~~~~~~~~~~~~~~~~f~~~s~l~~P~~~ll~lnl~alv~gi~r~~~~~~~~~~~~~~~~~~~wvv~~ 319 (362)
++++.+|+||+|+.+.+. .+ + +.+..|++++++++++++++|++++.... ......+++++|.++|
T Consensus 497 ~~~~~~f~VT~Kg~~~~~--~~------~---~~~~~p~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~w~~~~ 562 (802)
T 4hg6_A 497 RPRSARFAVTAKDETLSE--NY------I---SPIYRPLLFTFLLCLSGVLATLVRWVAFP---GDRSVLLVVGGWAVLN 562 (802)
T ss_dssp STTCCCCCCCCCCCCCSS--CC------B---CTTCHHHHHHHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHH
T ss_pred CCCCCcceECCCCccccc--cc------h---hhHHHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhhhHHHHHH
Confidence 889999999999875422 11 2 25789999999999999999999987543 2233456678888888
Q ss_pred HHHHHHHHHhhhCC
Q 041629 320 CWPVYEAMVLRTDK 333 (362)
Q Consensus 320 l~p~~~al~~rk~k 333 (362)
++.+..++....++
T Consensus 563 l~~l~~~~~~~~~~ 576 (802)
T 4hg6_A 563 VLLVGFALRAVAEK 576 (802)
T ss_dssp HHHHHHHHTTTBCC
T ss_pred HHHHHHHHHHHhcC
Confidence 88888877654433
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=29.79 E-value=17 Score=33.78 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=44.0
Q ss_pred CCCcchHHHHHHHHhhhh------------hcccccCCceeeecCc-cccc----------cccCCCChhhhhHHHHHHh
Q 041629 61 GGSALTFFAFMEAAKFAA------------HWLPFCRKFNLMERNP-RAYF----------SSSSSTSTHACCSEIKRWA 117 (362)
Q Consensus 61 g~s~l~~~al~e~~~fat------------~~~~~~rGw~s~y~~p-~~~f----------~GlaP~~l~~~l~QR~RWa 117 (362)
|..+++.+++.+.+.|.. .++++.+||++....+ ..-+ .--.|+.+.....||.||+
T Consensus 177 ~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~ 256 (287)
T 2fy7_A 177 GVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETML 256 (287)
T ss_dssp SEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTT
T ss_pred eEEEEEHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEc
Confidence 345677888877655543 3446678888773322 0001 1237899999999999999
Q ss_pred hhhHHHhhhhcCcc
Q 041629 118 IGLLEVAFSRYCPI 131 (362)
Q Consensus 118 ~G~lQIf~sk~nPl 131 (362)
++.++.+ +++++
T Consensus 257 ~~Gl~~~--~y~~~ 268 (287)
T 2fy7_A 257 SDGLNSL--TYQVL 268 (287)
T ss_dssp TSSGGGC--CCEEE
T ss_pred CCCcccC--ceEEE
Confidence 9988764 34443
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=27.29 E-value=64 Score=27.45 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCCcceeEEecCCCCCcchHHHHHH
Q 041629 34 LSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFME 72 (362)
Q Consensus 34 ~~~~~~~~~~~a~~yp~~~~~~~~sddg~s~l~~~al~e 72 (362)
-....++.|+++.+|| ++.+.+.|||++--+.+.+.+
T Consensus 18 ~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~ 54 (240)
T 3bcv_A 18 KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD 54 (240)
T ss_dssp TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH
T ss_pred HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH
Confidence 4567999999999997 588999999988766555443
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=26.56 E-value=62 Score=31.34 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=35.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcceeEEecCCCCCc-chHHHHHH
Q 041629 29 YKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSA-LTFFAFME 72 (362)
Q Consensus 29 ~~e~~~~~~~~~~~~~a~~yp~~~~~~~~sddg~s~-l~~~al~e 72 (362)
++|+.-....|+-|+++.+||..+..+-+-|||++- -+.+.+.+
T Consensus 38 yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~ 82 (472)
T 1xhb_A 38 HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES 82 (472)
T ss_dssp SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH
Confidence 567767888999999999999888899999999875 35555544
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=25.43 E-value=41 Score=29.11 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCcceeEEecCCCCCcchHH
Q 041629 34 LSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFF 68 (362)
Q Consensus 34 ~~~~~~~~~~~a~~yp~~~~~~~~sddg~s~l~~~ 68 (362)
-....|+.|+++.+|| ++.+.+.|||++-=+.+
T Consensus 14 ~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~ 46 (255)
T 1qg8_A 14 DYVAKSISSILSQTFS--DFELFIMDDNSNEETLN 46 (255)
T ss_dssp TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHH
T ss_pred HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHH
Confidence 4677899999999998 68899999998764433
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=17.38 E-value=87 Score=30.69 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=32.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcceeEEecCCCCCcchHH
Q 041629 29 YKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFF 68 (362)
Q Consensus 29 ~~e~~~~~~~~~~~~~a~~yp~~~~~~~~sddg~s~l~~~ 68 (362)
++|+.-....|+.|+++.+||..++.+-+-|||++-=+.+
T Consensus 75 yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~ 114 (501)
T 2ffu_A 75 HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDG 114 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHH
T ss_pred CcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHH
Confidence 4565547889999999999998778999999998875543
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=17.08 E-value=1.1e+02 Score=30.78 Aligned_cols=43 Identities=19% Similarity=0.033 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcceeEEecCCCCCcch-HHHHH
Q 041629 29 YKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALT-FFAFM 71 (362)
Q Consensus 29 ~~e~~~~~~~~~~~~~a~~yp~~~~~~~~sddg~s~l~-~~al~ 71 (362)
++|+.-....|+-|+++.+||...+.+-+-|||++-=+ .+.+.
T Consensus 121 yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~ 164 (570)
T 2d7i_A 121 HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE 164 (570)
T ss_dssp SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHH
Confidence 45665778899999999999987789999999988766 44443
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=14.28 E-value=1.6e+02 Score=27.12 Aligned_cols=41 Identities=15% Similarity=-0.032 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcceeEEecCCCCCcchHHHHH
Q 041629 29 YKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTFFAFM 71 (362)
Q Consensus 29 ~~e~~~~~~~~~~~~~a~~yp~~~~~~~~sddg~s~l~~~al~ 71 (362)
++|. -....++-|+++.+|| ....+.+-|||++-=|.+-+.
T Consensus 57 yN~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~~~~ 97 (329)
T 3ckj_A 57 LDEE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEIRAV 97 (329)
T ss_dssp SSCT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHhhCC-CCcEEEEEeCCCCchHHHHHH
Confidence 4444 3567899999999998 457889999998876555443
No 9
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=10.54 E-value=2e+02 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=27.0
Q ss_pred CCCChHHHHHHHHHHHHhcCCCcceeEEecCCCCC
Q 041629 29 YKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGS 63 (362)
Q Consensus 29 ~~e~~~~~~~~~~~~~a~~yp~~~~~~~~sddg~s 63 (362)
++-|- +..++-|++....+.++.-+.+||||..
T Consensus 11 yNRp~--l~~~L~sL~~~~p~~~~~~iivsdDgs~ 43 (343)
T 1fo8_A 11 CDRST--VRRCLDKLLHYRPSAELFPIIVSQDCGH 43 (343)
T ss_dssp SSCTT--HHHHHHHHHHHCSCTTTSCEEEEECTTC
T ss_pred CCcHH--HHHHHHHHHhcCCCcCCcEEEEEECCCC
Confidence 35563 7788889999887788899999999964
No 10
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=8.93 E-value=4.1e+02 Score=23.15 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=25.4
Q ss_pred HHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchh
Q 041629 286 FFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTK 339 (362)
Q Consensus 286 l~alv~gi~r~~~~~~~~~~~~~~~~~~~wvv~~l~p~~~al~~rk~k~~iP~~ 339 (362)
++++++|+..++.++.... -..|.+...-+......+ .|++.+|.|++.+..
T Consensus 68 ~~g~i~gll~~i~g~~~~~-~p~q~lldy~laf~~~Gl-aG~f~~~~~~~~~~~ 119 (192)
T 3rlb_A 68 VGGLIWGILSMITGHAYIL-SLSQAFLEYLVAPVSLGI-AGLFRQKTAPLKLAP 119 (192)
T ss_dssp HHHHHHHHHHHHTTCSCCS-SHHHHHHHHTHHHHHGGG-GGGGCCCSSSCCHHH
T ss_pred HHHHHHHHHHHHhCCcccc-chHHHHHHHHHHHHHHHH-HHhheeccccccHHH
Confidence 5666677776665431111 123343343333333333 377766666655543
Done!