BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041631
         (358 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RN2|A Chain A, Structural Basis Of Cytosolic Dna Recognition By Innate
           Immune Receptors
 pdb|3RN2|B Chain B, Structural Basis Of Cytosolic Dna Recognition By Innate
           Immune Receptors
 pdb|3RN5|A Chain A, Structural Basis Of Cytosolic Dna Recognition By Innate
           Immune Receptors
 pdb|3RN5|B Chain B, Structural Basis Of Cytosolic Dna Recognition By Innate
           Immune Receptors
 pdb|3RN5|C Chain C, Structural Basis Of Cytosolic Dna Recognition By Innate
           Immune Receptors
 pdb|3RN5|D Chain D, Structural Basis Of Cytosolic Dna Recognition By Innate
           Immune Receptors
          Length = 208

 Score = 31.6 bits (70), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 296 EPLGVWNNGGFFVQSDSRPRRLLLYD--PNTQEMRDLGLRS 334
           +PLG   NG F VQ  +  ++ +L+D   NT +M  LG+R+
Sbjct: 119 QPLGTIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRN 159


>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
 pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
 pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
 pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
          Length = 386

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 94  GVLGGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSV 144
           GV GG +D    + GLR  +    +A R+++ +  Y  T P   K+Y  S+
Sbjct: 230 GVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSL 280


>pdb|3DXI|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Putative
           Aldolase (Bvu_2661) From Bacteroides Vulgatus
 pdb|3DXI|B Chain B, Crystal Structure Of The N-Terminal Domain Of A Putative
           Aldolase (Bvu_2661) From Bacteroides Vulgatus
          Length = 320

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 35  PIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLS-CMFPDETLADLSVQDLDHQQ 90
           P+ + KHL+N+ST+ I + ++E + T     P DL+  + P   L D     +D Q 
Sbjct: 61  PVSVLKHLRNISTKKIAIXLNEKNTT-----PEDLNHLLLPIIGLVDXIRIAIDPQN 112


>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
          Length = 766

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 11/75 (14%)

Query: 284 SKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFK 343
           ++H SV  L  ++ LG  + GG  + ++    R+      T E  DLG+ +++F  Y F 
Sbjct: 437 ARHESVRSLNWKDMLGWQSRGGSEIGTN----RV------TPEEADLGMIAYYFQKYEF- 485

Query: 344 ESLIPVKGVDSFSDI 358
           + LI V G ++F  +
Sbjct: 486 DGLIIVGGFEAFESL 500


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,645,465
Number of Sequences: 62578
Number of extensions: 503755
Number of successful extensions: 1025
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 5
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)