Query 041631
Match_columns 358
No_of_seqs 148 out of 1508
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 5.6E-35 1.2E-39 254.1 26.6 217 97-325 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 2.7E-15 5.8E-20 123.0 16.9 139 206-345 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 2.7E-15 5.9E-20 117.9 13.8 104 206-309 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 1.9E-11 4.2E-16 110.5 22.1 314 1-346 7-372 (373)
5 PHA02713 hypothetical protein; 98.9 4.4E-07 9.4E-12 88.8 21.4 216 95-335 297-545 (557)
6 PF12937 F-box-like: F-box-lik 98.8 8.3E-10 1.8E-14 70.1 0.0 40 1-40 4-43 (47)
7 PF00646 F-box: F-box domain; 98.7 3.8E-09 8.2E-14 67.4 1.1 42 1-42 6-47 (48)
8 PLN02153 epithiospecifier prot 98.7 6.3E-06 1.4E-10 76.0 22.4 207 113-333 52-294 (341)
9 PHA03098 kelch-like protein; P 98.7 4.2E-06 9E-11 82.1 22.4 195 113-332 313-520 (534)
10 PHA02713 hypothetical protein; 98.7 3.1E-06 6.8E-11 82.9 21.4 197 113-333 274-499 (557)
11 smart00256 FBOX A Receptor for 98.7 2.7E-09 5.8E-14 65.6 -0.3 39 1-39 1-39 (41)
12 KOG4441 Proteins containing BT 98.6 6.9E-06 1.5E-10 80.4 21.5 214 95-332 326-555 (571)
13 PLN02193 nitrile-specifier pro 98.6 1.5E-05 3.3E-10 76.6 22.4 206 113-332 195-419 (470)
14 PHA02790 Kelch-like protein; P 98.6 1.1E-05 2.4E-10 77.8 21.3 185 113-330 289-477 (480)
15 KOG4441 Proteins containing BT 98.5 8.9E-06 1.9E-10 79.6 18.0 195 114-332 304-508 (571)
16 TIGR03548 mutarot_permut cycli 98.4 0.00013 2.8E-09 66.8 23.3 172 171-351 87-311 (323)
17 TIGR03547 muta_rot_YjhT mutatr 98.4 0.00015 3.3E-09 67.0 23.5 216 99-333 15-308 (346)
18 PLN02193 nitrile-specifier pro 98.3 0.00017 3.7E-09 69.4 22.6 176 172-351 193-385 (470)
19 PLN02153 epithiospecifier prot 98.3 0.0002 4.3E-09 66.1 20.7 159 172-334 50-236 (341)
20 PHA03098 kelch-like protein; P 98.2 0.00011 2.4E-09 72.0 18.6 168 173-351 312-495 (534)
21 PRK14131 N-acetylneuraminic ac 98.1 0.00086 1.9E-08 62.7 21.7 218 97-333 34-330 (376)
22 PHA02790 Kelch-like protein; P 98.1 0.00023 4.9E-09 68.7 17.0 165 171-352 286-455 (480)
23 PRK14131 N-acetylneuraminic ac 97.9 0.0043 9.4E-08 58.0 22.1 151 172-329 189-374 (376)
24 TIGR03548 mutarot_permut cycli 97.9 0.0035 7.5E-08 57.3 20.1 134 113-266 90-231 (323)
25 TIGR03547 muta_rot_YjhT mutatr 97.3 0.012 2.5E-07 54.4 15.6 150 179-332 33-236 (346)
26 KOG4693 Uncharacterized conser 97.2 0.039 8.4E-07 47.5 15.6 154 179-335 109-288 (392)
27 KOG2120 SCF ubiquitin ligase, 96.9 0.00018 4E-09 62.7 -0.5 38 1-38 101-138 (419)
28 KOG1230 Protein containing rep 96.8 0.075 1.6E-06 48.7 14.7 155 179-334 158-351 (521)
29 KOG0379 Kelch repeat-containin 96.7 0.17 3.6E-06 49.0 17.5 155 179-334 92-260 (482)
30 KOG0379 Kelch repeat-containin 96.3 0.39 8.5E-06 46.5 17.8 207 113-334 90-312 (482)
31 KOG2997 F-box protein FBX9 [Ge 96.3 0.0013 2.9E-08 57.6 0.6 44 1-44 110-158 (366)
32 KOG0281 Beta-TrCP (transducin 96.0 0.0024 5.1E-08 56.6 0.6 41 3-43 84-124 (499)
33 KOG1230 Protein containing rep 95.6 0.45 9.8E-06 43.7 13.4 154 179-334 102-291 (521)
34 KOG4693 Uncharacterized conser 95.0 0.29 6.3E-06 42.3 9.9 132 179-311 161-310 (392)
35 PF02191 OLF: Olfactomedin-lik 94.9 1.3 2.9E-05 38.7 14.1 129 196-333 65-213 (250)
36 smart00284 OLF Olfactomedin-li 93.0 3.7 7.9E-05 35.9 13.0 123 202-332 75-217 (255)
37 PF13964 Kelch_6: Kelch motif 92.8 0.32 6.8E-06 30.6 4.8 36 206-241 7-44 (50)
38 COG4257 Vgb Streptogramin lyas 91.2 9.9 0.00022 33.5 13.6 218 99-333 70-315 (353)
39 PF01344 Kelch_1: Kelch motif; 90.2 1.3 2.9E-05 27.1 5.5 35 206-240 7-43 (47)
40 PF07646 Kelch_2: Kelch motif; 89.6 1.2 2.6E-05 27.8 5.1 37 206-242 7-47 (49)
41 KOG2055 WD40 repeat protein [G 89.3 10 0.00023 35.6 12.5 103 225-332 280-383 (514)
42 PF07893 DUF1668: Protein of u 88.9 10 0.00023 34.9 12.7 127 101-246 76-223 (342)
43 KOG0310 Conserved WD40 repeat- 88.8 21 0.00046 33.7 15.0 162 172-354 48-218 (487)
44 PF06433 Me-amine-dh_H: Methyl 88.6 9 0.00019 34.9 11.5 120 206-330 189-327 (342)
45 PF02897 Peptidase_S9_N: Proly 87.7 25 0.00054 33.2 15.5 122 206-331 283-412 (414)
46 TIGR02658 TTQ_MADH_Hv methylam 87.6 23 0.00051 32.7 14.0 118 207-329 202-336 (352)
47 PF13964 Kelch_6: Kelch motif 87.4 1.5 3.2E-05 27.5 4.4 30 302-331 10-44 (50)
48 PF07762 DUF1618: Protein of u 87.4 5.3 0.00011 31.0 8.4 67 226-292 7-99 (131)
49 PF08450 SGL: SMP-30/Gluconola 86.0 22 0.00047 30.7 21.4 197 98-334 8-224 (246)
50 PF10282 Lactonase: Lactonase, 85.8 29 0.00062 31.9 15.5 116 210-332 154-286 (345)
51 TIGR01640 F_box_assoc_1 F-box 84.8 24 0.00052 30.2 12.7 119 208-333 3-137 (230)
52 PF08450 SGL: SMP-30/Gluconola 84.2 26 0.00057 30.2 14.7 111 206-331 5-130 (246)
53 PF07893 DUF1668: Protein of u 82.0 32 0.00069 31.7 12.2 82 179-266 203-296 (342)
54 PF05096 Glu_cyclase_2: Glutam 81.3 37 0.00081 29.9 14.1 139 171-331 67-211 (264)
55 PF10282 Lactonase: Lactonase, 80.8 46 0.00099 30.6 18.4 119 209-332 201-333 (345)
56 KOG0274 Cdc4 and related F-box 79.3 0.46 1E-05 46.4 -0.8 41 1-41 111-151 (537)
57 KOG4341 F-box protein containi 79.0 0.53 1.1E-05 43.6 -0.5 36 1-36 75-110 (483)
58 PF07250 Glyoxal_oxid_N: Glyox 78.6 34 0.00073 29.8 10.5 160 179-350 50-225 (243)
59 KOG3545 Olfactomedin and relat 76.8 50 0.0011 28.7 10.9 121 205-333 72-212 (249)
60 PF13418 Kelch_4: Galactose ox 74.8 8 0.00017 23.8 4.3 35 206-240 7-44 (49)
61 PRK11138 outer membrane biogen 73.8 76 0.0016 29.7 12.6 108 206-328 65-183 (394)
62 KOG0293 WD40 repeat-containing 72.1 63 0.0014 30.2 10.7 68 258-330 406-477 (519)
63 smart00564 PQQ beta-propeller 71.7 12 0.00027 20.6 4.3 25 302-328 5-29 (33)
64 PRK11028 6-phosphogluconolacto 70.4 83 0.0018 28.4 11.8 96 225-324 12-111 (330)
65 PRK11138 outer membrane biogen 70.1 96 0.0021 29.0 13.2 104 206-329 252-359 (394)
66 TIGR03300 assembly_YfgL outer 68.1 1E+02 0.0022 28.5 12.4 104 206-327 61-167 (377)
67 COG4257 Vgb Streptogramin lyas 66.1 59 0.0013 28.9 8.8 124 96-247 194-319 (353)
68 PF13088 BNR_2: BNR repeat-lik 65.7 93 0.002 27.2 13.8 124 179-308 138-275 (275)
69 PF03088 Str_synth: Strictosid 65.2 14 0.00031 26.5 4.3 34 298-331 3-53 (89)
70 KOG2106 Uncharacterized conser 65.1 1.4E+02 0.003 28.9 12.6 68 270-344 389-457 (626)
71 TIGR03866 PQQ_ABC_repeats PQQ- 65.0 94 0.002 27.0 14.8 104 226-332 180-289 (300)
72 cd01207 Ena-Vasp Enabled-VASP- 63.9 25 0.00055 26.4 5.6 41 113-161 11-51 (111)
73 TIGR03300 assembly_YfgL outer 63.2 1.3E+02 0.0027 27.9 13.0 105 206-329 237-344 (377)
74 smart00612 Kelch Kelch domain. 59.8 11 0.00023 22.5 2.6 19 171-192 14-32 (47)
75 PF01011 PQQ: PQQ enzyme repea 59.8 18 0.00039 21.0 3.4 24 304-329 1-24 (38)
76 PF13360 PQQ_2: PQQ-like domai 58.1 1.1E+02 0.0025 25.7 17.4 188 100-328 35-235 (238)
77 KOG0292 Vesicle coat complex C 57.5 86 0.0019 32.5 9.4 72 257-330 214-287 (1202)
78 KOG2096 WD40 repeat protein [G 56.3 1.6E+02 0.0034 26.8 10.1 35 297-332 192-226 (420)
79 PF13360 PQQ_2: PQQ-like domai 55.8 1.2E+02 0.0027 25.4 14.4 129 179-328 7-145 (238)
80 COG1520 FOG: WD40-like repeat 55.8 1.7E+02 0.0037 27.0 12.3 106 206-327 64-175 (370)
81 PF12458 DUF3686: ATPase invol 55.2 1.3E+02 0.0029 28.4 9.6 139 98-278 235-383 (448)
82 KOG0279 G protein beta subunit 54.9 58 0.0012 28.8 6.9 68 253-327 197-266 (315)
83 PRK11028 6-phosphogluconolacto 54.8 1.6E+02 0.0035 26.5 17.9 121 208-332 183-315 (330)
84 PF13415 Kelch_3: Galactose ox 53.7 33 0.00072 21.1 4.1 16 225-240 19-34 (49)
85 KOG0647 mRNA export protein (c 52.1 61 0.0013 29.0 6.7 62 270-336 49-115 (347)
86 KOG0649 WD40 repeat protein [G 51.3 1.4E+02 0.0029 26.1 8.4 59 271-331 81-152 (325)
87 PLN02772 guanylate kinase 51.1 1.1E+02 0.0024 28.8 8.6 72 206-280 30-107 (398)
88 KOG1920 IkappaB kinase complex 51.0 3.6E+02 0.0077 29.3 17.6 67 226-292 267-335 (1265)
89 PF03178 CPSF_A: CPSF A subuni 51.0 1.9E+02 0.0041 26.1 12.9 99 225-334 62-170 (321)
90 PF13570 PQQ_3: PQQ-like domai 50.2 26 0.00056 20.5 3.1 21 302-324 20-40 (40)
91 COG2706 3-carboxymuconate cycl 49.6 2.1E+02 0.0046 26.2 14.1 77 256-333 199-286 (346)
92 cd01206 Homer Homer type EVH1 49.0 47 0.001 24.8 4.7 38 113-161 13-51 (111)
93 COG3386 Gluconolactonase [Carb 46.8 2.2E+02 0.0049 25.8 12.5 108 211-330 37-158 (307)
94 KOG0291 WD40-repeat-containing 46.6 3.4E+02 0.0074 27.8 15.1 116 206-325 251-382 (893)
95 COG3055 Uncharacterized protei 46.2 2.4E+02 0.0052 26.1 9.6 82 206-292 42-134 (381)
96 COG3055 Uncharacterized protei 45.1 2.6E+02 0.0055 25.9 12.4 128 179-311 200-357 (381)
97 KOG0321 WD40 repeat-containing 45.1 70 0.0015 31.6 6.5 102 226-329 75-181 (720)
98 PF05096 Glu_cyclase_2: Glutam 42.8 2.4E+02 0.0052 24.9 13.2 108 209-329 54-163 (264)
99 PTZ00420 coronin; Provisional 41.3 3.8E+02 0.0082 26.8 14.0 116 209-331 177-301 (568)
100 KOG1446 Histone H3 (Lys4) meth 40.4 2.8E+02 0.006 25.0 12.5 97 226-330 163-269 (311)
101 KOG2055 WD40 repeat protein [G 39.9 1.3E+02 0.0028 28.7 7.1 84 270-355 234-326 (514)
102 TIGR03075 PQQ_enz_alc_DH PQQ-d 39.0 3.9E+02 0.0085 26.3 12.7 110 206-328 65-194 (527)
103 KOG0293 WD40 repeat-containing 38.1 2.4E+02 0.0052 26.6 8.5 53 270-328 333-389 (519)
104 PF14583 Pectate_lyase22: Olig 37.8 73 0.0016 29.8 5.3 105 224-331 167-280 (386)
105 TIGR03074 PQQ_membr_DH membran 35.1 5.4E+02 0.012 26.8 12.3 29 206-239 190-220 (764)
106 COG2706 3-carboxymuconate cycl 35.0 3.6E+02 0.0079 24.8 14.3 116 212-332 53-184 (346)
107 KOG4378 Nuclear protein COP1 [ 34.3 1.4E+02 0.003 28.8 6.5 56 270-329 186-245 (673)
108 PF02191 OLF: Olfactomedin-lik 33.0 2.6E+02 0.0057 24.5 7.8 40 206-245 176-215 (250)
109 PF13013 F-box-like_2: F-box-l 32.9 11 0.00025 28.2 -0.6 26 1-26 25-50 (109)
110 KOG0271 Notchless-like WD40 re 32.7 1.2E+02 0.0026 28.2 5.7 46 269-326 135-190 (480)
111 KOG0649 WD40 repeat protein [G 31.6 3.6E+02 0.0078 23.7 12.6 97 225-330 136-242 (325)
112 PF02239 Cytochrom_D1: Cytochr 31.5 4.3E+02 0.0094 24.6 11.8 97 225-329 16-114 (369)
113 PF14157 YmzC: YmzC-like prote 31.3 65 0.0014 21.3 2.8 17 315-331 41-57 (63)
114 KOG4152 Host cell transcriptio 31.0 5.2E+02 0.011 25.3 12.5 90 113-217 59-153 (830)
115 PF08268 FBA_3: F-box associat 30.1 1.5E+02 0.0033 22.5 5.4 48 303-350 5-61 (129)
116 PF12768 Rax2: Cortical protei 30.0 3.9E+02 0.0085 23.9 8.5 65 171-242 15-81 (281)
117 PF10382 DUF2439: Protein of u 29.2 2.1E+02 0.0045 20.2 5.4 33 300-334 18-50 (83)
118 KOG0316 Conserved WD40 repeat- 29.1 3.9E+02 0.0085 23.3 13.3 185 100-330 27-220 (307)
119 PF14339 DUF4394: Domain of un 28.6 1.7E+02 0.0038 25.3 5.8 57 99-159 36-92 (236)
120 PF15525 DUF4652: Domain of un 27.9 3.6E+02 0.0078 22.5 7.6 59 274-333 89-158 (200)
121 cd00260 Sialidase Sialidases o 27.7 4.7E+02 0.01 23.8 12.2 85 206-290 151-242 (351)
122 KOG2437 Muskelin [Signal trans 26.8 1.3E+02 0.0029 29.1 5.1 122 116-245 234-366 (723)
123 PF06058 DCP1: Dcp1-like decap 26.2 91 0.002 23.9 3.4 28 306-335 22-49 (122)
124 PF06433 Me-amine-dh_H: Methyl 26.2 5.2E+02 0.011 23.8 18.4 166 146-329 41-219 (342)
125 KOG3926 F-box proteins [Amino 25.6 29 0.00063 30.5 0.6 37 1-37 205-242 (332)
126 KOG2502 Tub family proteins [G 25.2 42 0.00091 30.6 1.5 34 1-34 48-89 (355)
127 PF00397 WW: WW domain; Inter 24.9 1E+02 0.0022 16.9 2.6 14 314-327 13-26 (31)
128 KOG1273 WD40 repeat protein [G 24.0 5.6E+02 0.012 23.4 14.1 122 226-352 176-314 (405)
129 KOG2048 WD40 repeat protein [G 23.7 7E+02 0.015 25.2 9.4 112 207-330 436-555 (691)
130 KOG1310 WD40 repeat protein [G 23.5 4.4E+02 0.0095 26.0 7.8 113 99-234 59-179 (758)
131 KOG0639 Transducin-like enhanc 22.1 1.4E+02 0.0031 28.8 4.3 69 258-329 476-545 (705)
132 TIGR02800 propeller_TolB tol-p 22.1 6.4E+02 0.014 23.4 13.5 120 208-332 153-275 (417)
133 KOG0295 WD40 repeat-containing 21.3 5.6E+02 0.012 23.8 7.7 59 270-331 313-372 (406)
134 PF15408 PH_7: Pleckstrin homo 21.2 19 0.0004 25.5 -1.1 23 16-38 77-99 (104)
135 TIGR03866 PQQ_ABC_repeats PQQ- 21.2 5.3E+02 0.011 22.1 20.7 94 226-327 96-191 (300)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=5.6e-35 Score=254.05 Aligned_cols=217 Identities=24% Similarity=0.395 Sum_probs=162.6
Q ss_pred eeeecceEEEeecCCeeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeE
Q 041631 97 GGPYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSL 176 (358)
Q Consensus 97 ~~s~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~ 176 (358)
++|||||||+... ..++||||+||+++.||+++.... . .....++||||+.+++||||++...... .....+|
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~--~-~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~- 73 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRS--N-KESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQ- 73 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccc--c-cccceEEEeecccCCcEEEEEEEeecCC--CCCccEE-
Confidence 4799999999875 457999999999999997653211 1 1122689999999999999999765321 1356788
Q ss_pred EEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCc-eEEEEEECCCceEE-EecCCCCcccc-cccc
Q 041631 177 CTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKH-KIIISFDMANEVFQ-EVQCPDIASSA-YMET 253 (358)
Q Consensus 177 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~~-~i~~P~~~~~~-~~~~ 253 (358)
||++++++||.+...+ +....... +|++||++||++....... ..|++||+++|+|+ .+++|...... ....
T Consensus 74 --Vys~~~~~Wr~~~~~~--~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 74 --VYTLGSNSWRTIECSP--PHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred --EEEeCCCCccccccCC--CCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 9999999999987411 11112223 8999999999998654222 38999999999999 58998765321 1237
Q ss_pred eeEECCeEEEEEecCCCcEEEEEEECC---CeeeEEEEEccC---Cc---cceEEEeeCCcEEEEecCCCCE-EEEEeCC
Q 041631 254 LDLYHDSLSLLFLNTTNNHYEIWVLKE---RIWSKHLSVTLL---GV---EEPLGVWNNGGFFVQSDSRPRR-LLLYDPN 323 (358)
Q Consensus 254 L~~~~g~L~~~~~~~~~~~l~IW~l~~---~~W~~~~~i~~~---~~---~~p~~~~~~g~i~~~~~~~~~~-l~~yd~~ 323 (358)
|++++|+|+++.......+++||+|++ .+|+|.++|+.. .+ ..|+++.++|+|++........ +++||++
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence 999999999998754445799999997 679999999742 22 3478888999999987621144 9999998
Q ss_pred CC
Q 041631 324 TQ 325 (358)
Q Consensus 324 t~ 325 (358)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=2.7e-15 Score=123.04 Aligned_cols=139 Identities=21% Similarity=0.406 Sum_probs=100.4
Q ss_pred eEEeCCeEEEEEeecCCCc-eEEEEEECCCceE-EEecCCCCccc-ccccceeEE-CCeEEEEEecCCCcEEEEEEECC-
Q 041631 206 CTYLDGLCHWLWELEDSKH-KIIISFDMANEVF-QEVQCPDIASS-AYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE- 280 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~-~~i~~P~~~~~-~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~- 280 (358)
+|++||++||++....... ..|++||+++|+| +.+++|..... .....|.+. +|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 5899999999999775332 2899999999999 88999987762 222266544 78999998654456799999994
Q ss_pred ----CeeeEEEEEccCC---c-----cceEEEeeCCcEEEEecC--CC---CEEEEEeCCCCcEEEeeecCc-e--eEEE
Q 041631 281 ----RIWSKHLSVTLLG---V-----EEPLGVWNNGGFFVQSDS--RP---RRLLLYDPNTQEMRDLGLRSF-W--FSVY 340 (358)
Q Consensus 281 ----~~W~~~~~i~~~~---~-----~~p~~~~~~g~i~~~~~~--~~---~~l~~yd~~t~~~~~v~~~~~-~--~~~~ 340 (358)
.+|+|.++|+... . ...+.+.+++++++.... +. ..++.|+ +.+.++++.+... . +.++
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 6999999998542 1 123444455667776542 11 5688888 7788888876432 2 6678
Q ss_pred Eeeec
Q 041631 341 NFKES 345 (358)
Q Consensus 341 ~y~~s 345 (358)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 99887
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.66 E-value=2.7e-15 Score=117.95 Aligned_cols=104 Identities=31% Similarity=0.460 Sum_probs=80.0
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCCC-cccccccceeEECCeEEEEEecCCC--cEEEEEEECC--
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDI-ASSAYMETLDLYHDSLSLLFLNTTN--NHYEIWVLKE-- 280 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~-~~~~~~~~L~~~~g~L~~~~~~~~~--~~l~IW~l~~-- 280 (358)
++++||++||++.........|++||+++|+|+.|++|.. ........|.+++|+|+++...... ..++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 5899999999999854456799999999999999999922 1222223899999999999865332 4799999998
Q ss_pred -CeeeEEEEEccC---C-----ccceEEEeeCCcEEEE
Q 041631 281 -RIWSKHLSVTLL---G-----VEEPLGVWNNGGFFVQ 309 (358)
Q Consensus 281 -~~W~~~~~i~~~---~-----~~~p~~~~~~g~i~~~ 309 (358)
++|+|.+.+-+. . ...+.++.++|+|++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 799998775443 1 1346666678888887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.46 E-value=1.9e-11 Score=110.55 Aligned_cols=314 Identities=12% Similarity=0.054 Sum_probs=152.1
Q ss_pred CchhHHHHHHhcCCc-cccceeeeccccchhhcCChHhHHHHhhcCCCcEEEEEeecCCCCCCCCCCcceeeccCCCccc
Q 041631 1 MYGDAMVEILSTLSV-KNLLRFKCVCKSWYSLIENPIFISKHLKNVSTRLIVVYVDEDDGTDEYYHPTDLSCMFPDETLA 79 (358)
Q Consensus 1 LP~Dll~eIL~rLP~-~sl~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
||+|||..|..|||. -+++|||+|||.||+.+.... +.....+.++++.....+.. .+.+... . ....++.+
T Consensus 7 Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~-~~~~~~~l 79 (373)
T PLN03215 7 LPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNPFRTRPLILFNPINPSE--TLTDDRS-Y-ISRPGAFL 79 (373)
T ss_pred CCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCCcccccccccCcccCCC--Ccccccc-c-ccccccee
Confidence 799999999999985 499999999999999877421 00001111111111000000 0000000 0 00000000
Q ss_pred ccc-CcCCCCCCCCccEEeeeecceEEEeecC---CeeEEEecCccceecCCCCCCCCCCCC-CcccceEEE-eeeCCC-
Q 041631 80 DLS-VQDLDHQQPATGVLGGPYDGIYCIFGLR---DRITLWNVATRDSRTLPNYGPTCPPNT-KVYKTSVGF-GLDPNR- 152 (358)
Q Consensus 80 ~~~-~~~~~~p~~~~~~~~~s~~GLl~l~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~-~~~~~~~~~-g~d~~~- 152 (358)
.+. +..++ ...++..|+|.-.... .+..+.||+++.-..+|+...+...-. ......+.+ +.+...
T Consensus 80 s~~~~~r~~-------~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~~ 152 (373)
T PLN03215 80 SRAAFFRVT-------LSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRRE 152 (373)
T ss_pred eeeEEEEee-------cCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccccc
Confidence 000 00000 0113567888776544 345999999999777775332211100 000111111 111100
Q ss_pred --CCEEEEEEEEEecCCCcccceeeEEEEEec------CCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCc
Q 041631 153 --NDYKLIMIYTYWDERTTELHEFSLCTIYNL------RTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKH 224 (358)
Q Consensus 153 --~~ykvv~~~~~~~~~~~~~~~~e~~~vyss------~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~ 224 (358)
..|+-+.+....... ...+-+..|+.. ..++|..++. .. ......++.+|.+|-+...+
T Consensus 153 ~~~~~~~~~~~~~~~~~---~~~~~vl~i~~~g~l~~w~~~~Wt~l~~-~~-----~~~~DIi~~kGkfYAvD~~G---- 219 (373)
T PLN03215 153 TRPGYQRSALVKVKEGD---NHRDGVLGIGRDGKINYWDGNVLKALKQ-MG-----YHFSDIIVHKGQTYALDSIG---- 219 (373)
T ss_pred cccceeEEEEEEeecCC---CcceEEEEEeecCcEeeecCCeeeEccC-CC-----ceeeEEEEECCEEEEEcCCC----
Confidence 013211111111110 111111113322 2356666642 11 11222799999999875433
Q ss_pred eEEEEEECCCceEEEecCCCC--cc---cccccceeEECCeEEEEEecC---------------CCcEEEEEEECC--Ce
Q 041631 225 KIIISFDMANEVFQEVQCPDI--AS---SAYMETLDLYHDSLSLLFLNT---------------TNNHYEIWVLKE--RI 282 (358)
Q Consensus 225 ~~il~fD~~~e~~~~i~~P~~--~~---~~~~~~L~~~~g~L~~~~~~~---------------~~~~l~IW~l~~--~~ 282 (358)
.+.++|..- +.+.+..+.. .. ......|++..|+|.++.... ....++|+.++. +.
T Consensus 220 -~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~ 297 (373)
T PLN03215 220 -IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAK 297 (373)
T ss_pred -eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCc
Confidence 366666322 1222221111 00 011237999999999988521 124689999987 89
Q ss_pred eeEEEEEccC----CccceEEEe-------eCCcEEEEecCCCCEEEEEeCCCCcEEEeeecC--ce-eEEEEeeecc
Q 041631 283 WSKHLSVTLL----GVEEPLGVW-------NNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRS--FW-FSVYNFKESL 346 (358)
Q Consensus 283 W~~~~~i~~~----~~~~p~~~~-------~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~~~~--~~-~~~~~y~~sl 346 (358)
|+++.+++-. .....+.+. +++.|+|..+ ....+||++.++...+...- .. ..+-+|.+|+
T Consensus 298 WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd---~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 372 (373)
T PLN03215 298 WMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED---TMPKVFKLDNGNGSSIETTISESSQSSFEMFVPSF 372 (373)
T ss_pred EEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC---CcceEEECCCCCccceEeecCccccchheeecccc
Confidence 9999988632 111122221 3567888864 67889999999977764322 11 2334566654
No 5
>PHA02713 hypothetical protein; Provisional
Probab=98.87 E-value=4.4e-07 Score=88.84 Aligned_cols=216 Identities=10% Similarity=0.035 Sum_probs=129.1
Q ss_pred EEeeeecceEEEeecC-------CeeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCC
Q 041631 95 VLGGPYDGIYCIFGLR-------DRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDER 167 (358)
Q Consensus 95 ~~~~s~~GLl~l~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 167 (358)
...+..+|-|-+..+. +.....||.+++|..+|+.+... .....+.+ + =||..+......
T Consensus 297 ~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R-----~~~~~~~~--~-----g~IYviGG~~~~- 363 (557)
T PHA02713 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR-----CRFSLAVI--D-----DTIYAIGGQNGT- 363 (557)
T ss_pred eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-----hceeEEEE--C-----CEEEEECCcCCC-
Confidence 3345566666555432 12478999999999999876321 01111111 2 144444432211
Q ss_pred CcccceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCC-------------------CceEEE
Q 041631 168 TTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDS-------------------KHKIII 228 (358)
Q Consensus 168 ~~~~~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------------------~~~~il 228 (358)
.....+| +|+..+++|...+. ++..... ..++.++|.+|-+...... ....+.
T Consensus 364 -~~~~sve---~Ydp~~~~W~~~~~---mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 364 -NVERTIE---CYTMGDDKWKMLPD---MPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred -CCCceEE---EEECCCCeEEECCC---CCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 1234689 99999999998874 3331112 2377889999988643210 124689
Q ss_pred EEECCCceEEEecC-CCCcccccccceeEECCeEEEEEecCCCcE-E-EEEEECC---CeeeEEEEEccCCccceEEEee
Q 041631 229 SFDMANEVFQEVQC-PDIASSAYMETLDLYHDSLSLLFLNTTNNH-Y-EIWVLKE---RIWSKHLSVTLLGVEEPLGVWN 302 (358)
Q Consensus 229 ~fD~~~e~~~~i~~-P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~-l-~IW~l~~---~~W~~~~~i~~~~~~~p~~~~~ 302 (358)
+||+.+++|+.++- |... ....++.++|+|+++....+... . .+-+.+. ..|+..-.++-......+++ -
T Consensus 436 ~YDP~td~W~~v~~m~~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~ 511 (557)
T PHA02713 436 RYDTVNNIWETLPNFWTGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-H 511 (557)
T ss_pred EECCCCCeEeecCCCCccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-E
Confidence 99999999997632 3222 22267888999999875322111 1 2344443 47998776543212222222 2
Q ss_pred CCcEEEEecC-CCCEEEEEeCCCCcEEEeeecCc
Q 041631 303 NGGFFVQSDS-RPRRLLLYDPNTQEMRDLGLRSF 335 (358)
Q Consensus 303 ~g~i~~~~~~-~~~~l~~yd~~t~~~~~v~~~~~ 335 (358)
+|+|++..+. ....+-.||++|++|+.+.-...
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 7788887651 11258899999999999875543
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.80 E-value=8.3e-10 Score=70.08 Aligned_cols=40 Identities=25% Similarity=0.599 Sum_probs=34.8
Q ss_pred CchhHHHHHHhcCCccccceeeeccccchhhcCChHhHHH
Q 041631 1 MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISK 40 (358)
Q Consensus 1 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~ 40 (358)
||+|++.+||.+||++++.++++|||+|++++.++.+.+.
T Consensus 4 LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 4 LPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp S-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 7999999999999999999999999999999998855444
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.72 E-value=3.8e-09 Score=67.44 Aligned_cols=42 Identities=38% Similarity=0.615 Sum_probs=36.3
Q ss_pred CchhHHHHHHhcCCccccceeeeccccchhhcCChHhHHHHh
Q 041631 1 MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHL 42 (358)
Q Consensus 1 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~~ 42 (358)
||+|++.+||.+|+.+++++++.|||+|++++.++.+...+.
T Consensus 6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 799999999999999999999999999999999999876653
No 8
>PLN02153 epithiospecifier protein
Probab=98.70 E-value=6.3e-06 Score=76.00 Aligned_cols=207 Identities=11% Similarity=0.095 Sum_probs=115.0
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceeccc
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVC 192 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~ 192 (358)
+++.||.+.+|..+|+.... +.........+.++ =+++.+...... .....++ +|+..+++|...+.
T Consensus 52 ~~~yd~~~~~W~~~~~~~~~-p~~~~~~~~~~~~~-------~~iyv~GG~~~~--~~~~~v~---~yd~~t~~W~~~~~ 118 (341)
T PLN02153 52 LYVFDFNTHTWSIAPANGDV-PRISCLGVRMVAVG-------TKLYIFGGRDEK--REFSDFY---SYDTVKNEWTFLTK 118 (341)
T ss_pred EEEEECCCCEEEEcCccCCC-CCCccCceEEEEEC-------CEEEEECCCCCC--CccCcEE---EEECCCCEEEEecc
Confidence 59999999999998865311 11000001111221 134444322111 1234677 99999999998764
Q ss_pred cc--CeeeeecCCcceEEeCCeEEEEEeecCC-------CceEEEEEECCCceEEEecCCCCc-ccccccceeEECCeEE
Q 041631 193 FK--TIHYCIPHSHGCTYLDGLCHWLWELEDS-------KHKIIISFDMANEVFQEVQCPDIA-SSAYMETLDLYHDSLS 262 (358)
Q Consensus 193 ~~--~~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fD~~~e~~~~i~~P~~~-~~~~~~~L~~~~g~L~ 262 (358)
.. ..|.... ...++..+|.+|-+...... ....+.+||+.+.+|..++.+... .......++..+|+++
T Consensus 119 ~~~~~~p~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iy 197 (341)
T PLN02153 119 LDEEGGPEART-FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIW 197 (341)
T ss_pred CCCCCCCCCce-eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEE
Confidence 11 1121111 12267889999977653211 113688999999999987643211 1111224667899998
Q ss_pred EEEecC------C---CcEEEEEEECC--CeeeEEEEEccCCc--cceEEEeeCCcEEEEecCC-------------CCE
Q 041631 263 LLFLNT------T---NNHYEIWVLKE--RIWSKHLSVTLLGV--EEPLGVWNNGGFFVQSDSR-------------PRR 316 (358)
Q Consensus 263 ~~~~~~------~---~~~l~IW~l~~--~~W~~~~~i~~~~~--~~p~~~~~~g~i~~~~~~~-------------~~~ 316 (358)
++.... + ...-.|++++- ..|+++......+. ...-.+.-+++|++..+.. .+.
T Consensus 198 v~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 198 VVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred EEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccccccccc
Confidence 876321 0 01124555554 89998865432221 1111222356777765410 136
Q ss_pred EEEEeCCCCcEEEeeec
Q 041631 317 LLLYDPNTQEMRDLGLR 333 (358)
Q Consensus 317 l~~yd~~t~~~~~v~~~ 333 (358)
++.||+++++|+++...
T Consensus 278 v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 278 GYALDTETLVWEKLGEC 294 (341)
T ss_pred EEEEEcCccEEEeccCC
Confidence 89999999999998643
No 9
>PHA03098 kelch-like protein; Provisional
Probab=98.70 E-value=4.2e-06 Score=82.07 Aligned_cols=195 Identities=10% Similarity=0.120 Sum_probs=117.8
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceeccc
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVC 192 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~ 192 (358)
.+.+||.|++|..+|+.+... . ....+.+ + + ++..+..... ......++ +|+..+++|+..+.
T Consensus 313 v~~yd~~~~~W~~~~~~~~~R--~---~~~~~~~--~----~-~lyv~GG~~~--~~~~~~v~---~yd~~~~~W~~~~~ 375 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIYPR--K---NPGVTVF--N----N-RIYVIGGIYN--SISLNTVE---SWKPGESKWREEPP 375 (534)
T ss_pred EEEEeCCCCeeeECCCCCccc--c---cceEEEE--C----C-EEEEEeCCCC--CEecceEE---EEcCCCCceeeCCC
Confidence 489999999999998765221 0 1111111 1 1 2433332211 12245678 99999999998764
Q ss_pred ccCeeeeecCCcceEEeCCeEEEEEeecC--CCceEEEEEECCCceEEEecC-CCCcccccccceeEECCeEEEEEecCC
Q 041631 193 FKTIHYCIPHSHGCTYLDGLCHWLWELED--SKHKIIISFDMANEVFQEVQC-PDIASSAYMETLDLYHDSLSLLFLNTT 269 (358)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i~~-P~~~~~~~~~~L~~~~g~L~~~~~~~~ 269 (358)
+|... ....++.++|.+|-+..... .....+..||+.+++|+.+.- |.... ....+..+|+++++.....
T Consensus 376 ---lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 376 ---LIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY---GGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred ---cCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc---CceEEEECCEEEEECCccC
Confidence 33211 11226788999998765321 123578999999999998743 43221 1245667999988774321
Q ss_pred Cc----EEEEEEECC--CeeeEEEEEccCCccceEEEeeCCcEEEEecCC----CCEEEEEeCCCCcEEEeee
Q 041631 270 NN----HYEIWVLKE--RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSR----PRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 270 ~~----~l~IW~l~~--~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~----~~~l~~yd~~t~~~~~v~~ 332 (358)
.. .-.+|+.+. ..|++.-.+.........++ -+++|++..+.. ...+..||+++++|+.+..
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 11 123777776 89998654322111122222 367788776521 2479999999999998864
No 10
>PHA02713 hypothetical protein; Provisional
Probab=98.70 E-value=3.1e-06 Score=82.86 Aligned_cols=197 Identities=12% Similarity=0.128 Sum_probs=117.8
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceeccc
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVC 192 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~ 192 (358)
...+||.|++|..+++.+... .....+. ++ + +|..+..... .......++ .|+..++.|...+.
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r------~~~~~a~-l~----~-~IYviGG~~~-~~~~~~~v~---~Yd~~~n~W~~~~~ 337 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHI------INYASAI-VD----N-EIIIAGGYNF-NNPSLNKVY---KINIENKIHVELPP 337 (557)
T ss_pred EEEEeCCCCeEEECCCCCccc------cceEEEE-EC----C-EEEEEcCCCC-CCCccceEE---EEECCCCeEeeCCC
Confidence 477999999999998776321 1111111 11 1 3444432110 011234678 99999999988764
Q ss_pred ccCeeeeecCCcceEEeCCeEEEEEeecCC-CceEEEEEECCCceEEEecC-CCCcccccccceeEECCeEEEEEecCCC
Q 041631 193 FKTIHYCIPHSHGCTYLDGLCHWLWELEDS-KHKIIISFDMANEVFQEVQC-PDIASSAYMETLDLYHDSLSLLFLNTTN 270 (358)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~il~fD~~~e~~~~i~~-P~~~~~~~~~~L~~~~g~L~~~~~~~~~ 270 (358)
++.... ...++.++|.+|-++...+. ....+-+||+.+++|+.++- |..... ...+.++|+++++......
T Consensus 338 ---m~~~R~-~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~---~~~~~~~g~IYviGG~~~~ 410 (557)
T PHA02713 338 ---MIKNRC-RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS---YGMCVLDQYIYIIGGRTEH 410 (557)
T ss_pred ---Ccchhh-ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc---ccEEEECCEEEEEeCCCcc
Confidence 333111 22378999999988764321 23568999999999998743 433221 2567789999998743211
Q ss_pred -------------------cEEEEEEECC--CeeeEEEEEccCCccceEEEeeCCcEEEEecCC-----CCEEEEEeCCC
Q 041631 271 -------------------NHYEIWVLKE--RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSR-----PRRLLLYDPNT 324 (358)
Q Consensus 271 -------------------~~l~IW~l~~--~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~-----~~~l~~yd~~t 324 (358)
..-.+...+- ..|+.+-.+........++ .-+|+|++..+.. ...+..||+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 0123555554 8898765443221222223 2367888886510 12467999999
Q ss_pred -CcEEEeeec
Q 041631 325 -QEMRDLGLR 333 (358)
Q Consensus 325 -~~~~~v~~~ 333 (358)
++|+.+...
T Consensus 490 ~~~W~~~~~m 499 (557)
T PHA02713 490 YNGWELITTT 499 (557)
T ss_pred CCCeeEcccc
Confidence 899998654
No 11
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.69 E-value=2.7e-09 Score=65.64 Aligned_cols=39 Identities=38% Similarity=0.589 Sum_probs=37.0
Q ss_pred CchhHHHHHHhcCCccccceeeeccccchhhcCChHhHH
Q 041631 1 MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFIS 39 (358)
Q Consensus 1 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~ 39 (358)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.64 E-value=6.9e-06 Score=80.38 Aligned_cols=214 Identities=14% Similarity=0.129 Sum_probs=132.6
Q ss_pred EEeeeecceEEEeecCC-------eeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCC
Q 041631 95 VLGGPYDGIYCIFGLRD-------RITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDER 167 (358)
Q Consensus 95 ~~~~s~~GLl~l~~~~~-------~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 167 (358)
.-++..+|.|-...+.+ .....||.+.+|..+|+.... + ..++++ .-+.++.++....+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~------R--~~~~v~----~l~g~iYavGG~dg-- 391 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK------R--SDFGVA----VLDGKLYAVGGFDG-- 391 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc------c--ccceeE----EECCEEEEEecccc--
Confidence 44566777665554333 238999999999999987632 1 112221 01234555543332
Q ss_pred CcccceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCC--CceEEEEEECCCceEEEecCCCC
Q 041631 168 TTELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDS--KHKIIISFDMANEVFQEVQCPDI 245 (358)
Q Consensus 168 ~~~~~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i~~P~~ 245 (358)
......+| .|+..++.|...+. ++... ....++.++|.+|-+....+. ....+.+||+.+++|+.+ |+.
T Consensus 392 ~~~l~svE---~YDp~~~~W~~va~---m~~~r-~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M 462 (571)
T KOG4441|consen 392 EKSLNSVE---CYDPVTNKWTPVAP---MLTRR-SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APM 462 (571)
T ss_pred ccccccEE---EecCCCCcccccCC---CCcce-eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCc
Confidence 23455799 99999999999975 22211 122388999999987764432 246899999999999975 332
Q ss_pred cccccccceeEECCeEEEEEecCCC---cEEEEEEECCCeeeEEEEEccCCccceEEEeeCCcEEEEecC----CCCEEE
Q 041631 246 ASSAYMETLDLYHDSLSLLFLNTTN---NHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDS----RPRRLL 318 (358)
Q Consensus 246 ~~~~~~~~L~~~~g~L~~~~~~~~~---~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~----~~~~l~ 318 (358)
........++.++|+|+++....+. .+++..--+...|..+..+.... ...-...-++.+++..+. .-..+-
T Consensus 463 ~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG~~~~~~l~~ve 541 (571)
T KOG4441|consen 463 NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGGFDGNNNLNTVE 541 (571)
T ss_pred ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-ccccEEEECCEEEEEecccCccccceeE
Confidence 2222223678889999999864332 22333333338898885443221 111111236667776541 244689
Q ss_pred EEeCCCCcEEEeee
Q 041631 319 LYDPNTQEMRDLGL 332 (358)
Q Consensus 319 ~yd~~t~~~~~v~~ 332 (358)
.||+++++|+....
T Consensus 542 ~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 542 CYDPETDTWTEVTE 555 (571)
T ss_pred EcCCCCCceeeCCC
Confidence 99999999999864
No 13
>PLN02193 nitrile-specifier protein
Probab=98.59 E-value=1.5e-05 Score=76.63 Aligned_cols=206 Identities=10% Similarity=0.076 Sum_probs=117.7
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceeccc
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVC 192 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~ 192 (358)
+++.||.+.+|..+|+.... +. ..+... ....++ + ++..+..... ......++ +|++.+++|+.+..
T Consensus 195 v~~yD~~~~~W~~~~~~g~~-P~-~~~~~~-~~v~~~----~-~lYvfGG~~~--~~~~ndv~---~yD~~t~~W~~l~~ 261 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDV-PH-LSCLGV-RMVSIG----S-TLYVFGGRDA--SRQYNGFY---SFDTTTNEWKLLTP 261 (470)
T ss_pred EEEEECCCCEEEeCCCCCCC-CC-Ccccce-EEEEEC----C-EEEEECCCCC--CCCCccEE---EEECCCCEEEEcCc
Confidence 58999999999988754211 11 000011 111111 1 2333322111 11234577 99999999998864
Q ss_pred ccCeeeeecCCcceEEeCCeEEEEEeecC-CCceEEEEEECCCceEEEecCCCCcc-cccccceeEECCeEEEEEecCCC
Q 041631 193 FKTIHYCIPHSHGCTYLDGLCHWLWELED-SKHKIIISFDMANEVFQEVQCPDIAS-SAYMETLDLYHDSLSLLFLNTTN 270 (358)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~~P~~~~-~~~~~~L~~~~g~L~~~~~~~~~ 270 (358)
....|... ....++.+++.+|.+.-... .....+.+||+.+.+|+.++.|.... ......++..+|+++++......
T Consensus 262 ~~~~P~~R-~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 262 VEEGPTPR-SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred CCCCCCCc-cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC
Confidence 21112111 11226778999998764332 12346889999999999886543221 11122566779999888753222
Q ss_pred cEEEEEEECC--CeeeEEEEEccCC--ccceEEEeeCCcEEEEecCC-------------CCEEEEEeCCCCcEEEeee
Q 041631 271 NHYEIWVLKE--RIWSKHLSVTLLG--VEEPLGVWNNGGFFVQSDSR-------------PRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 271 ~~l~IW~l~~--~~W~~~~~i~~~~--~~~p~~~~~~g~i~~~~~~~-------------~~~l~~yd~~t~~~~~v~~ 332 (358)
..-++|+++- .+|++...+...+ -...-++.-+++|++..+.. .+.++.||++|++|+++..
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 2346777765 8999887653222 11112222356777765410 1248999999999999864
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=98.59 E-value=1.1e-05 Score=77.76 Aligned_cols=185 Identities=8% Similarity=0.024 Sum_probs=113.0
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceeccc
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVC 192 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~ 192 (358)
....||.+++|..+|+.+... .....+. .+ =+|..+..... ...+| .|+..+++|...+.
T Consensus 289 v~~Ydp~~~~W~~~~~m~~~r-----~~~~~v~--~~-----~~iYviGG~~~-----~~sve---~ydp~~n~W~~~~~ 348 (480)
T PHA02790 289 AIAVNYISNNWIPIPPMNSPR-----LYASGVP--AN-----NKLYVVGGLPN-----PTSVE---RWFHGDAAWVNMPS 348 (480)
T ss_pred EEEEECCCCEEEECCCCCchh-----hcceEEE--EC-----CEEEEECCcCC-----CCceE---EEECCCCeEEECCC
Confidence 367899999999999876321 0111111 11 13444432211 24578 99999999998864
Q ss_pred ccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCCCcccccccceeEECCeEEEEEecCCCcE
Q 041631 193 FKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNH 272 (358)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~ 272 (358)
++.... ...++.++|.+|-+..... ....+..||+++++|+.++.++.... ....+..+|+|+++.. .
T Consensus 349 ---l~~~r~-~~~~~~~~g~IYviGG~~~-~~~~ve~ydp~~~~W~~~~~m~~~r~--~~~~~~~~~~IYv~GG-----~ 416 (480)
T PHA02790 349 ---LLKPRC-NPAVASINNVIYVIGGHSE-TDTTTEYLLPNHDQWQFGPSTYYPHY--KSCALVFGRRLFLVGR-----N 416 (480)
T ss_pred ---CCCCCc-ccEEEEECCEEEEecCcCC-CCccEEEEeCCCCEEEeCCCCCCccc--cceEEEECCEEEEECC-----c
Confidence 332111 2237899999998865432 12467899999999998744332221 1256678999998762 2
Q ss_pred EEEEEECCCeeeEEEEEccCCccceEEEeeCCcEEEEecC----CCCEEEEEeCCCCcEEEe
Q 041631 273 YEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDS----RPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 273 l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~----~~~~l~~yd~~t~~~~~v 330 (358)
.++.-.+...|+..-.+.........++ -+|+|++..+. ....+-.||+++++|+-.
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 3444334488997654432112222222 37788888651 124688999999999764
No 15
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.49 E-value=8.9e-06 Score=79.60 Aligned_cols=195 Identities=15% Similarity=0.175 Sum_probs=124.3
Q ss_pred EEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceecccc
Q 041631 114 TLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCF 193 (358)
Q Consensus 114 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~~ 193 (358)
...||.+++|..+.+.+... ... +...-. + +|..+..... .......+| .|++.++.|...+.
T Consensus 304 e~yd~~~~~w~~~a~m~~~r------~~~--~~~~~~---~-~lYv~GG~~~-~~~~l~~ve---~YD~~~~~W~~~a~- 366 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSPR------CRV--GVAVLN---G-KLYVVGGYDS-GSDRLSSVE---RYDPRTNQWTPVAP- 366 (571)
T ss_pred EEecCCcCcEeecCCCCccc------ccc--cEEEEC---C-EEEEEccccC-CCcccceEE---EecCCCCceeccCC-
Confidence 68999999999999877322 111 111111 1 4444433321 123456889 99999999999764
Q ss_pred cCeeeeecCCcceEEeCCeEEEEEeecC-CCceEEEEEECCCceEEEec-CCCCcccccccceeEECCeEEEEEecCCCc
Q 041631 194 KTIHYCIPHSHGCTYLDGLCHWLWELED-SKHKIIISFDMANEVFQEVQ-CPDIASSAYMETLDLYHDSLSLLFLNTTNN 271 (358)
Q Consensus 194 ~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~ 271 (358)
+....... ..+.++|.+|-++...+ .....+-.||..+++|+.+. ++... .....++++|+|+++.......
T Consensus 367 --M~~~R~~~-~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r---~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 367 --MNTKRSDF-GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR---SGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred --ccCccccc-eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce---eeeEEEEECCEEEEEcCcCCCc
Confidence 33211122 27899999999886553 33567999999999999874 44422 2225788899999998543322
Q ss_pred ----EEEEEEECCCeeeEEEEEccCCccceEEEeeCCcEEEEecC----CCCEEEEEeCCCCcEEEeee
Q 041631 272 ----HYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDS----RPRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 272 ----~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~----~~~~l~~yd~~t~~~~~v~~ 332 (358)
+++..--....|+..-.+.-......+++. ++.||...+. .-..+-.||+++++|+.+..
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 233332222889887766543222234433 6778888662 12347889999999999964
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.44 E-value=0.00013 Score=66.76 Aligned_cols=172 Identities=11% Similarity=0.114 Sum_probs=103.0
Q ss_pred cceeeEEEEEecCCCCc----eecccccCeeeeecCCcceEEeCCeEEEEEeecC-CCceEEEEEECCCceEEEec-CCC
Q 041631 171 LHEFSLCTIYNLRTNSW----RDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED-SKHKIIISFDMANEVFQEVQ-CPD 244 (358)
Q Consensus 171 ~~~~e~~~vyss~~~~W----~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-~P~ 244 (358)
...++ .|+..++.| +..+ ++|.... ...++.++|.+|.+..... .....+.+||+.+++|+.++ +|.
T Consensus 87 ~~~v~---~~d~~~~~w~~~~~~~~---~lp~~~~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 159 (323)
T TIGR03548 87 FSSVY---RITLDESKEELICETIG---NLPFTFE-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG 159 (323)
T ss_pred ceeEE---EEEEcCCceeeeeeEcC---CCCcCcc-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC
Confidence 34677 899999888 3433 3443111 2237788999998765321 12357999999999999885 554
Q ss_pred CcccccccceeEECCeEEEEEecCCCcEEEEEEECC--CeeeEEEEEcc--CC--c-cceEEEeeCCcEEEEecCC----
Q 041631 245 IASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKE--RIWSKHLSVTL--LG--V-EEPLGVWNNGGFFVQSDSR---- 313 (358)
Q Consensus 245 ~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~--~~--~-~~p~~~~~~g~i~~~~~~~---- 313 (358)
.... ...++..+|+|+++.........++|+.+- ..|++...+.. .+ . .....+..++.|++..+..
T Consensus 160 ~~r~--~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~ 237 (323)
T TIGR03548 160 EPRV--QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVY 237 (323)
T ss_pred CCCC--cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHH
Confidence 3221 124567799999988543233345677665 89987654321 11 1 1111222356777765411
Q ss_pred --------------------------------CCEEEEEeCCCCcEEEeeecC-ce---eEEEEeeecceeCCC
Q 041631 314 --------------------------------PRRLLLYDPNTQEMRDLGLRS-FW---FSVYNFKESLIPVKG 351 (358)
Q Consensus 314 --------------------------------~~~l~~yd~~t~~~~~v~~~~-~~---~~~~~y~~slv~~~~ 351 (358)
.+.+..||+++++|+.+.... .. ..+......|.-+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 238 NDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING 311 (323)
T ss_pred HHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec
Confidence 146999999999999987332 11 334444445544443
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.42 E-value=0.00015 Score=66.95 Aligned_cols=216 Identities=11% Similarity=0.092 Sum_probs=119.6
Q ss_pred eecceEEEeecC--CeeEEEec--CccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCC----Ccc
Q 041631 99 PYDGIYCIFGLR--DRITLWNV--ATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDER----TTE 170 (358)
Q Consensus 99 s~~GLl~l~~~~--~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~----~~~ 170 (358)
..++-|-+..+. +..++.++ .+++|..+|+.+.. ++ .....+.+ + =+|..+....... ...
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~R---~~~~~~~~--~-----~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGG-PR---NQAVAAAI--D-----GKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCC-Cc---ccceEEEE--C-----CEEEEEeCCCCCCCCCccee
Confidence 445555443332 23477774 67899999976521 11 00111111 2 1344443221110 011
Q ss_pred cceeeEEEEEecCCCCceecccccCeeeeecCCcceE-EeCCeEEEEEeecCC---------------------------
Q 041631 171 LHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCT-YLDGLCHWLWELEDS--------------------------- 222 (358)
Q Consensus 171 ~~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~--------------------------- 222 (358)
...++ .|+..+++|+..+. ..+..... ..++ .++|.+|-+......
T Consensus 84 ~~~v~---~Yd~~~~~W~~~~~--~~p~~~~~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 84 FDDVY---RYDPKKNSWQKLDT--RSPVGLLG-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred cccEE---EEECCCCEEecCCC--CCCCcccc-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 34688 99999999999863 22321111 1133 689999987643210
Q ss_pred --------CceEEEEEECCCceEEEec-CCCCcccccccceeEECCeEEEEEecC--CCcEEEEEEEC--C--CeeeEEE
Q 041631 223 --------KHKIIISFDMANEVFQEVQ-CPDIASSAYMETLDLYHDSLSLLFLNT--TNNHYEIWVLK--E--RIWSKHL 287 (358)
Q Consensus 223 --------~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~L~~~~g~L~~~~~~~--~~~~l~IW~l~--~--~~W~~~~ 287 (358)
....+.+||+.+.+|+.+. +|.... ....++..+|+|.++.... .....++|..+ . ..|.+.-
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP 235 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC
Confidence 0147999999999999874 342211 1225677899999987532 12334566543 2 6898876
Q ss_pred EEccCC------ccceEEEeeCCcEEEEecCCC---------------------CEEEEEeCCCCcEEEeeec
Q 041631 288 SVTLLG------VEEPLGVWNNGGFFVQSDSRP---------------------RRLLLYDPNTQEMRDLGLR 333 (358)
Q Consensus 288 ~i~~~~------~~~p~~~~~~g~i~~~~~~~~---------------------~~l~~yd~~t~~~~~v~~~ 333 (358)
.+.... ......+.-+++|++..+... ..+-.||+++++|+.+...
T Consensus 236 ~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l 308 (346)
T TIGR03547 236 PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL 308 (346)
T ss_pred CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC
Confidence 553211 011112234778888765100 1467899999999988643
No 18
>PLN02193 nitrile-specifier protein
Probab=98.35 E-value=0.00017 Score=69.40 Aligned_cols=176 Identities=9% Similarity=0.061 Sum_probs=100.8
Q ss_pred ceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC-CCceEEEEEECCCceEEEecCCC-Ccccc
Q 041631 172 HEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED-SKHKIIISFDMANEVFQEVQCPD-IASSA 249 (358)
Q Consensus 172 ~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~~P~-~~~~~ 249 (358)
..++ +|+.++++|...+.....|........++.+++.+|-+.-... .....+.+||+.+.+|+.+.... .....
T Consensus 193 ~~v~---~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R 269 (470)
T PLN02193 193 KHLY---VFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR 269 (470)
T ss_pred CcEE---EEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc
Confidence 3577 9999999999765311222211112226788999997764322 12356889999999999874321 11111
Q ss_pred cccceeEECCeEEEEEecCCC-cEEEEEEECC--CeeeEEEEEccC---CccceEEEeeCCcEEEEecC---CCCEEEEE
Q 041631 250 YMETLDLYHDSLSLLFLNTTN-NHYEIWVLKE--RIWSKHLSVTLL---GVEEPLGVWNNGGFFVQSDS---RPRRLLLY 320 (358)
Q Consensus 250 ~~~~L~~~~g~L~~~~~~~~~-~~l~IW~l~~--~~W~~~~~i~~~---~~~~p~~~~~~g~i~~~~~~---~~~~l~~y 320 (358)
....++..+++|+++...... ..-.+|+++- ..|+........ .....+.+ -+++|++..+. ....+..|
T Consensus 270 ~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 270 SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEE
Confidence 112456678999887743221 2234555554 899865432111 11222333 35667776441 12569999
Q ss_pred eCCCCcEEEeeecCc---e---eEEEEeeecceeCCC
Q 041631 321 DPNTQEMRDLGLRSF---W---FSVYNFKESLIPVKG 351 (358)
Q Consensus 321 d~~t~~~~~v~~~~~---~---~~~~~y~~slv~~~~ 351 (358)
|+++++|+++...+. + .....+...|+-+.+
T Consensus 349 D~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 349 DPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred ECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 999999999965421 1 334444455554444
No 19
>PLN02153 epithiospecifier protein
Probab=98.28 E-value=0.0002 Score=66.05 Aligned_cols=159 Identities=7% Similarity=0.067 Sum_probs=92.5
Q ss_pred ceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC-CCceEEEEEECCCceEEEecCC-CC--cc
Q 041631 172 HEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED-SKHKIIISFDMANEVFQEVQCP-DI--AS 247 (358)
Q Consensus 172 ~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~~P-~~--~~ 247 (358)
..++ +|+..++.|.........|.........+.++|.+|-+..... .....+.+||+.+.+|+.++-. .. ..
T Consensus 50 ~~~~---~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~ 126 (341)
T PLN02153 50 KDLY---VFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPE 126 (341)
T ss_pred CcEE---EEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCC
Confidence 3577 9999999999876421222200111226888999998765322 1234689999999999987431 10 01
Q ss_pred cccccceeEECCeEEEEEecCCCc------E-EEEEEECC--CeeeEEEEEcc--CC-ccceEEEeeCCcEEEEecC---
Q 041631 248 SAYMETLDLYHDSLSLLFLNTTNN------H-YEIWVLKE--RIWSKHLSVTL--LG-VEEPLGVWNNGGFFVQSDS--- 312 (358)
Q Consensus 248 ~~~~~~L~~~~g~L~~~~~~~~~~------~-l~IW~l~~--~~W~~~~~i~~--~~-~~~p~~~~~~g~i~~~~~~--- 312 (358)
.......+..+++++++....... . -.||+.+- ..|...-.... .+ ....+.+ -+++|++..+.
T Consensus 127 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 127 ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 111124567789988877432110 1 24666654 88997554321 11 1112232 35666665320
Q ss_pred ---------CCCEEEEEeCCCCcEEEeeecC
Q 041631 313 ---------RPRRLLLYDPNTQEMRDLGLRS 334 (358)
Q Consensus 313 ---------~~~~l~~yd~~t~~~~~v~~~~ 334 (358)
..+.+..||+++++|+++...+
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccccC
Confidence 0246899999999999997543
No 20
>PHA03098 kelch-like protein; Provisional
Probab=98.22 E-value=0.00011 Score=72.04 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=101.4
Q ss_pred eeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC-CCceEEEEEECCCceEEEec-CCCCccccc
Q 041631 173 EFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED-SKHKIIISFDMANEVFQEVQ-CPDIASSAY 250 (358)
Q Consensus 173 ~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~il~fD~~~e~~~~i~-~P~~~~~~~ 250 (358)
.+. .|+..++.|...+. ++... .....+.++|.+|-+..... .....+..||+.+.+|+.++ +|....
T Consensus 312 ~v~---~yd~~~~~W~~~~~---~~~~R-~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~--- 381 (534)
T PHA03098 312 SVV---SYDTKTKSWNKVPE---LIYPR-KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY--- 381 (534)
T ss_pred cEE---EEeCCCCeeeECCC---CCccc-ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc---
Confidence 566 89999999988764 22211 11237888999998775432 12346889999999999873 343321
Q ss_pred ccceeEECCeEEEEEecCC--CcEEEEEEECC--CeeeEEEEEccCCccceEEEeeCCcEEEEecCC-------CCEEEE
Q 041631 251 METLDLYHDSLSLLFLNTT--NNHYEIWVLKE--RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSR-------PRRLLL 319 (358)
Q Consensus 251 ~~~L~~~~g~L~~~~~~~~--~~~l~IW~l~~--~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~-------~~~l~~ 319 (358)
....+..+|+++++..... ...=.+++.+- ..|.+...++. +....-.+..++.|++..+.. -..+..
T Consensus 382 ~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 382 NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 2245677999999875311 11123455544 89988654321 222222333467788775410 124899
Q ss_pred EeCCCCcEEEeeecCce---eEEEEeeecceeCCC
Q 041631 320 YDPNTQEMRDLGLRSFW---FSVYNFKESLIPVKG 351 (358)
Q Consensus 320 yd~~t~~~~~v~~~~~~---~~~~~y~~slv~~~~ 351 (358)
||+++++|+++.....+ ...+.+...+.-+++
T Consensus 461 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG 495 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGG 495 (534)
T ss_pred ecCCCCceeeCCCCCcccccceEEEECCEEEEEcC
Confidence 99999999998643322 334445444444443
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.13 E-value=0.00086 Score=62.69 Aligned_cols=218 Identities=13% Similarity=0.116 Sum_probs=118.9
Q ss_pred eeeecceEEEeecC--CeeEEEecC--ccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEec-CC---C
Q 041631 97 GGPYDGIYCIFGLR--DRITLWNVA--TRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWD-ER---T 168 (358)
Q Consensus 97 ~~s~~GLl~l~~~~--~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~---~ 168 (358)
.+..++-|-+..+. ...++.++. +++|..+|+.+.. ++ .....+.. + + +|..+..... .. .
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~-~r---~~~~~v~~--~---~--~IYV~GG~~~~~~~~~~ 102 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGG-PR---EQAVAAFI--D---G--KLYVFGGIGKTNSEGSP 102 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCC-Cc---ccceEEEE--C---C--EEEEEcCCCCCCCCCce
Confidence 44556666554332 234777764 5789999865421 11 01111111 1 1 2333322111 00 0
Q ss_pred cccceeeEEEEEecCCCCceecccccCeeeeecCCcceEE-eCCeEEEEEeecCC-------------------------
Q 041631 169 TELHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTY-LDGLCHWLWELEDS------------------------- 222 (358)
Q Consensus 169 ~~~~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~------------------------- 222 (358)
.....++ +|+..+++|+.... ..|..... ..++. .+|.+|.+......
T Consensus 103 ~~~~~v~---~YD~~~n~W~~~~~--~~p~~~~~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~ 176 (376)
T PRK14131 103 QVFDDVY---KYDPKTNSWQKLDT--RSPVGLAG-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA 176 (376)
T ss_pred eEcccEE---EEeCCCCEEEeCCC--CCCCcccc-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHH
Confidence 1134677 99999999999863 12221111 11343 79999988653210
Q ss_pred ----------CceEEEEEECCCceEEEec-CCCCcccccccceeEECCeEEEEEec--CCCcEEEEEEEC--C--CeeeE
Q 041631 223 ----------KHKIIISFDMANEVFQEVQ-CPDIASSAYMETLDLYHDSLSLLFLN--TTNNHYEIWVLK--E--RIWSK 285 (358)
Q Consensus 223 ----------~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~L~~~~g~L~~~~~~--~~~~~l~IW~l~--~--~~W~~ 285 (358)
....+..||+.+.+|+.+. +|..... ...++..+++|+++... .+....++|..+ . ..|++
T Consensus 177 ~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~--~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 254 (376)
T PRK14131 177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTA--GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQK 254 (376)
T ss_pred HhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCC--cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceee
Confidence 0246999999999999874 3432211 12566679999998843 123455666543 2 78998
Q ss_pred EEEEccCC-------ccceEEEeeCCcEEEEecCCC---------------------CEEEEEeCCCCcEEEeeec
Q 041631 286 HLSVTLLG-------VEEPLGVWNNGGFFVQSDSRP---------------------RRLLLYDPNTQEMRDLGLR 333 (358)
Q Consensus 286 ~~~i~~~~-------~~~p~~~~~~g~i~~~~~~~~---------------------~~l~~yd~~t~~~~~v~~~ 333 (358)
+..+.... ........-+++|++..+... ..+-.||+++++|+.+...
T Consensus 255 ~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l 330 (376)
T PRK14131 255 LPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL 330 (376)
T ss_pred cCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC
Confidence 77664211 011112224677887754100 1234799999999988643
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=98.07 E-value=0.00023 Score=68.73 Aligned_cols=165 Identities=7% Similarity=0.004 Sum_probs=104.7
Q ss_pred cceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecC-CCCcccc
Q 041631 171 LHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQC-PDIASSA 249 (358)
Q Consensus 171 ~~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~-P~~~~~~ 249 (358)
...++ .|+..++.|...+. ++..... ...+.++|.+|-++.... ...+-.||+.+++|..++- |....
T Consensus 286 ~~~v~---~Ydp~~~~W~~~~~---m~~~r~~-~~~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r~-- 354 (480)
T PHA02790 286 HNNAI---AVNYISNNWIPIPP---MNSPRLY-ASGVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPRC-- 354 (480)
T ss_pred CCeEE---EEECCCCEEEECCC---CCchhhc-ceEEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCCc--
Confidence 34567 89999999999875 2221111 226789999998875432 2458899999999987733 33222
Q ss_pred cccceeEECCeEEEEEecCC-CcEEEEEEECCCeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEE
Q 041631 250 YMETLDLYHDSLSLLFLNTT-NNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMR 328 (358)
Q Consensus 250 ~~~~L~~~~g~L~~~~~~~~-~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~ 328 (358)
....+.++|+|+++..... ...++.+-.+...|+..-.+.. +......+.-+|+|++..+ ..-.||+++++|+
T Consensus 355 -~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~~~IYv~GG----~~e~ydp~~~~W~ 428 (480)
T PHA02790 355 -NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFGRRLFLVGR----NAEFYCESSNTWT 428 (480)
T ss_pred -ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-ccccceEEEECCEEEEECC----ceEEecCCCCcEe
Confidence 2256788999999875322 2456666555589987544321 2222223334788888743 4678999999999
Q ss_pred EeeecCce---eEEEEeeecceeCCCC
Q 041631 329 DLGLRSFW---FSVYNFKESLIPVKGV 352 (358)
Q Consensus 329 ~v~~~~~~---~~~~~y~~slv~~~~~ 352 (358)
.+.....+ .....+...+.-+++.
T Consensus 429 ~~~~m~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 429 LIDDPIYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred EcCCCCCCccccEEEEECCEEEEECCc
Confidence 98643322 4444555555555443
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.91 E-value=0.0043 Score=57.99 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=87.6
Q ss_pred ceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC----CCceEEEEEECCCceEEEec-CCCCc
Q 041631 172 HEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED----SKHKIIISFDMANEVFQEVQ-CPDIA 246 (358)
Q Consensus 172 ~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~~il~fD~~~e~~~~i~-~P~~~ 246 (358)
..++ +|+..++.|...+. +|.........+.+++.+|.+..... ........||.++.+|..+. +|...
T Consensus 189 ~~v~---~YD~~t~~W~~~~~---~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~ 262 (376)
T PRK14131 189 KEVL---SYDPSTNQWKNAGE---SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAP 262 (376)
T ss_pred ceEE---EEECCCCeeeECCc---CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCC
Confidence 4578 99999999998864 22201112236778999998875321 11234566788999998763 45432
Q ss_pred ccc-c----ccceeEECCeEEEEEecCCC--------------------cEEEEEEECCCeeeEEEEEccCCccceEEEe
Q 041631 247 SSA-Y----METLDLYHDSLSLLFLNTTN--------------------NHYEIWVLKERIWSKHLSVTLLGVEEPLGVW 301 (358)
Q Consensus 247 ~~~-~----~~~L~~~~g~L~~~~~~~~~--------------------~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~ 301 (358)
... . ....+.++|+|+++...... ...+++-.+...|++...++. +.....++.
T Consensus 263 ~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~-~r~~~~av~ 341 (376)
T PRK14131 263 GGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ-GLAYGVSVS 341 (376)
T ss_pred cCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCC-CccceEEEE
Confidence 111 0 00135678998887743110 124455555588987654432 222222333
Q ss_pred eCCcEEEEecC-----CCCEEEEEeCCCCcEEE
Q 041631 302 NNGGFFVQSDS-----RPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 302 ~~g~i~~~~~~-----~~~~l~~yd~~t~~~~~ 329 (358)
-+++|++..+. ....+..|+++++++..
T Consensus 342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 342 WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 46778887652 12367888887766653
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.86 E-value=0.0035 Score=57.34 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=73.8
Q ss_pred eEEEecCccce----ecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCce
Q 041631 113 ITLWNVATRDS----RTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWR 188 (358)
Q Consensus 113 ~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~ 188 (358)
.+.+|+.+++| ..+|+.|... ..... ..++ =+|..+..... ......++ +|+..++.|.
T Consensus 90 v~~~d~~~~~w~~~~~~~~~lp~~~------~~~~~-~~~~-----~~iYv~GG~~~--~~~~~~v~---~yd~~~~~W~ 152 (323)
T TIGR03548 90 VYRITLDESKEELICETIGNLPFTF------ENGSA-CYKD-----GTLYVGGGNRN--GKPSNKSY---LFNLETQEWF 152 (323)
T ss_pred EEEEEEcCCceeeeeeEcCCCCcCc------cCceE-EEEC-----CEEEEEeCcCC--CccCceEE---EEcCCCCCee
Confidence 47889999887 6677655221 11111 1112 13444332211 11234678 9999999999
Q ss_pred ecccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCC-Ccccc---cccceeEECCeEEEE
Q 041631 189 DLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPD-IASSA---YMETLDLYHDSLSLL 264 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~-~~~~~---~~~~L~~~~g~L~~~ 264 (358)
..+..+..+. .....+.++|.+|-+..........+.+||+.+++|+.+.... ..... ....++..+|++.++
T Consensus 153 ~~~~~p~~~r---~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 229 (323)
T TIGR03548 153 ELPDFPGEPR---VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI 229 (323)
T ss_pred ECCCCCCCCC---CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence 8864111111 1222678899999876533222235789999999999875321 11110 011233447888777
Q ss_pred Ee
Q 041631 265 FL 266 (358)
Q Consensus 265 ~~ 266 (358)
..
T Consensus 230 GG 231 (323)
T TIGR03548 230 GG 231 (323)
T ss_pred CC
Confidence 64
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.31 E-value=0.012 Score=54.42 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=86.7
Q ss_pred EEec--CCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCC-------CceEEEEEECCCceEEEecCCCCcccc
Q 041631 179 IYNL--RTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDS-------KHKIIISFDMANEVFQEVQCPDIASSA 249 (358)
Q Consensus 179 vyss--~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~il~fD~~~e~~~~i~~P~~~~~~ 249 (358)
+|++ .++.|+..+..+..+. .....+.++|.+|-+...... ....+-+||+.+.+|+.+..|.... .
T Consensus 33 ~~d~~~~~~~W~~l~~~p~~~R---~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~ 108 (346)
T TIGR03547 33 KLDLKKPSKGWQKIADFPGGPR---NQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-L 108 (346)
T ss_pred EEECCCCCCCceECCCCCCCCc---ccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-c
Confidence 7886 4578998875221111 112378899999988754211 1246889999999999886332111 1
Q ss_pred ccccee-EECCeEEEEEecCCC-----------------------------------cEEEEEEECC--CeeeEEEEEcc
Q 041631 250 YMETLD-LYHDSLSLLFLNTTN-----------------------------------NHYEIWVLKE--RIWSKHLSVTL 291 (358)
Q Consensus 250 ~~~~L~-~~~g~L~~~~~~~~~-----------------------------------~~l~IW~l~~--~~W~~~~~i~~ 291 (358)
.....+ ..+|+|+++...... ..=.+|+.+- ..|++.-.+..
T Consensus 109 ~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~ 188 (346)
T TIGR03547 109 LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPF 188 (346)
T ss_pred cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCC
Confidence 111223 569999988743210 0124666665 89998765542
Q ss_pred CCccceEEEeeCCcEEEEecC-----CCCEEEEE--eCCCCcEEEeee
Q 041631 292 LGVEEPLGVWNNGGFFVQSDS-----RPRRLLLY--DPNTQEMRDLGL 332 (358)
Q Consensus 292 ~~~~~p~~~~~~g~i~~~~~~-----~~~~l~~y--d~~t~~~~~v~~ 332 (358)
......-.+.-+++|++..+. ....+..| |+++++|+++..
T Consensus 189 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 189 LGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred CcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 222222223346778887541 01224444 567789998764
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.17 E-value=0.039 Score=47.52 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=89.3
Q ss_pred EEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC-C--CceEEEEEECCCceEEEecC---CCCccccccc
Q 041631 179 IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED-S--KHKIIISFDMANEVFQEVQC---PDIASSAYME 252 (358)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~--~~~~il~fD~~~e~~~~i~~---P~~~~~~~~~ 252 (358)
-|+.+++.|++.+..-.+|... ....+.+.+..+|-...-.+ . -..-+-+||+.+.+|+.+.. |+.-.+..
T Consensus 109 ~fDp~t~~W~~p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH-- 185 (392)
T KOG4693|consen 109 EFDPETNVWKKPEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH-- 185 (392)
T ss_pred eeccccccccccceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh--
Confidence 6999999999887522233312 22325666667775543221 1 12468899999999999865 44332222
Q ss_pred ceeEECCeEEEEEecCCC----------cEEEEEEECC--CeeeEEEEEccCCcc--ceEEEeeCCcEEEEecC------
Q 041631 253 TLDLYHDSLSLLFLNTTN----------NHYEIWVLKE--RIWSKHLSVTLLGVE--EPLGVWNNGGFFVQSDS------ 312 (358)
Q Consensus 253 ~L~~~~g~L~~~~~~~~~----------~~l~IW~l~~--~~W~~~~~i~~~~~~--~p~~~~~~g~i~~~~~~------ 312 (358)
.-.+++|.++++....+. -.-.|-.|+- +.|...-.-...+.. ..-.+.-+|++++-.+-
T Consensus 186 ~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~ 265 (392)
T KOG4693|consen 186 TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV 265 (392)
T ss_pred hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh
Confidence 334556777776632111 1123444443 788775322211221 11222347778776541
Q ss_pred CCCEEEEEeCCCCcEEEeeecCc
Q 041631 313 RPRRLLLYDPNTQEMRDLGLRSF 335 (358)
Q Consensus 313 ~~~~l~~yd~~t~~~~~v~~~~~ 335 (358)
--+.|+.||++|..|..|.-.|.
T Consensus 266 HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 266 HFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred hhcceeecccccchheeeeccCC
Confidence 13469999999999999988764
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00018 Score=62.71 Aligned_cols=38 Identities=29% Similarity=0.537 Sum_probs=35.5
Q ss_pred CchhHHHHHHhcCCccccceeeeccccchhhcCChHhH
Q 041631 1 MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFI 38 (358)
Q Consensus 1 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~ 38 (358)
||||+++.|++.|+.|+|.++..|||+|+++.++....
T Consensus 101 lpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 101 LPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 79999999999999999999999999999998887653
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.78 E-value=0.075 Score=48.66 Aligned_cols=155 Identities=11% Similarity=0.123 Sum_probs=90.2
Q ss_pred EEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC----CCceEEEEEECCCceEEEecCCCC-cccccccc
Q 041631 179 IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED----SKHKIIISFDMANEVFQEVQCPDI-ASSAYMET 253 (358)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~~il~fD~~~e~~~~i~~P~~-~~~~~~~~ 253 (358)
+|++.++.|.++.. ..-|....+.+..++-+-.+-+-...+. .-.+-+.+||+.+=+|+.+..+.. ....++.+
T Consensus 158 ~fd~~trkweql~~-~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq 236 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEF-GGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQ 236 (521)
T ss_pred eeeeccchheeecc-CCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcce
Confidence 89999999999885 2222111122212222221111111110 013468999999999999876442 11223335
Q ss_pred eeEE-CCeEEEEEe----------cCCCcEEEEEEECC-------CeeeEEEEEccCC---ccceEEEeeCCcEEEEec-
Q 041631 254 LDLY-HDSLSLLFL----------NTTNNHYEIWVLKE-------RIWSKHLSVTLLG---VEEPLGVWNNGGFFVQSD- 311 (358)
Q Consensus 254 L~~~-~g~L~~~~~----------~~~~~~l~IW~l~~-------~~W~~~~~i~~~~---~~~p~~~~~~g~i~~~~~- 311 (358)
+.+. +|.+.+... +.+...-++|.|+. -.|.++..+...+ ...-++++++++-++-.+
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV 316 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGV 316 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecce
Confidence 6666 777777652 12345668999976 4688877665432 344577777755444332
Q ss_pred ----C--------CCCEEEEEeCCCCcEEEeeecC
Q 041631 312 ----S--------RPRRLLLYDPNTQEMRDLGLRS 334 (358)
Q Consensus 312 ----~--------~~~~l~~yd~~t~~~~~v~~~~ 334 (358)
. ..+.|+.||+..++|.+.++.+
T Consensus 317 ~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 317 CDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred ecccccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 0 1345899999999998876643
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.65 E-value=0.17 Score=48.97 Aligned_cols=155 Identities=9% Similarity=0.010 Sum_probs=96.4
Q ss_pred EEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC--CCceEEEEEECCCceEEEecCCCC-ccccccccee
Q 041631 179 IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED--SKHKIIISFDMANEVFQEVQCPDI-ASSAYMETLD 255 (358)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i~~P~~-~~~~~~~~L~ 255 (358)
+|+..+..|......-..|... .....+.++..+|....... .....+-+||+.+.+|..+..-.. ........++
T Consensus 92 ~~d~~~~~w~~~~~~g~~p~~r-~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~ 170 (482)
T KOG0379|consen 92 VLDLESQLWTKPAATGDEPSPR-YGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSAT 170 (482)
T ss_pred EeecCCcccccccccCCCCCcc-cceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEE
Confidence 8888888898776522233211 22226788888887765442 224579999999999998754222 1111112566
Q ss_pred EECCeEEEEEecCCC--cEEEEEEECC--CeeeEEEEEccCC--ccceEEEeeCCcEEEEecC-----CCCEEEEEeCCC
Q 041631 256 LYHDSLSLLFLNTTN--NHYEIWVLKE--RIWSKHLSVTLLG--VEEPLGVWNNGGFFVQSDS-----RPRRLLLYDPNT 324 (358)
Q Consensus 256 ~~~g~L~~~~~~~~~--~~l~IW~l~~--~~W~~~~~i~~~~--~~~p~~~~~~g~i~~~~~~-----~~~~l~~yd~~t 324 (358)
..+.+|.++...... ..-++|+++- ..|.+..+.+..+ -..+..+.-++++++..+. .-..+..+|+.+
T Consensus 171 ~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~ 250 (482)
T KOG0379|consen 171 VVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLST 250 (482)
T ss_pred EECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeeccc
Confidence 667777777743222 4668898887 7799999877543 2334333334444444331 123489999999
Q ss_pred CcEEEeeecC
Q 041631 325 QEMRDLGLRS 334 (358)
Q Consensus 325 ~~~~~v~~~~ 334 (358)
.+|.++...+
T Consensus 251 ~~W~~~~~~g 260 (482)
T KOG0379|consen 251 WEWKLLPTGG 260 (482)
T ss_pred ceeeeccccC
Confidence 9999776554
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.32 E-value=0.39 Score=46.45 Aligned_cols=207 Identities=13% Similarity=0.070 Sum_probs=115.6
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceeccc
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVC 192 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~ 192 (358)
++|+|-.+..|.............. ......++ + +++.+..... .......+. .|+..|+.|+....
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~--g~~~~~~~------~-~l~lfGG~~~-~~~~~~~l~---~~d~~t~~W~~l~~ 156 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRY--GHSLSAVG------D-KLYLFGGTDK-KYRNLNELH---SLDLSTRTWSLLSP 156 (482)
T ss_pred eEEeecCCcccccccccCCCCCccc--ceeEEEEC------C-eEEEEccccC-CCCChhheE---eccCCCCcEEEecC
Confidence 6999999988876665432211111 11112222 2 2222221111 011233555 89999999998875
Q ss_pred ccCeeeeecCCcceEEeCCeEEEEEeecCC--CceEEEEEECCCceEEEecCCCCccc-ccccceeEECCeEEEEEecC-
Q 041631 193 FKTIHYCIPHSHGCTYLDGLCHWLWELEDS--KHKIIISFDMANEVFQEVQCPDIASS-AYMETLDLYHDSLSLLFLNT- 268 (358)
Q Consensus 193 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i~~P~~~~~-~~~~~L~~~~g~L~~~~~~~- 268 (358)
....|....... ++.++-.+|........ ..+.+.+||+++.+|..+........ .....++..+++++++....
T Consensus 157 ~~~~P~~r~~Hs-~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~ 235 (482)
T KOG0379|consen 157 TGDPPPPRAGHS-ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD 235 (482)
T ss_pred cCCCCCCcccce-EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc
Confidence 222222111222 55555567765543321 35689999999999999866443322 22236677799999988543
Q ss_pred C-CcEEEEEEECC--CeeeEEEEEccC---CccceEEEeeCCcEEEEecCC------CCEEEEEeCCCCcEEEeeecC
Q 041631 269 T-NNHYEIWVLKE--RIWSKHLSVTLL---GVEEPLGVWNNGGFFVQSDSR------PRRLLLYDPNTQEMRDLGLRS 334 (358)
Q Consensus 269 ~-~~~l~IW~l~~--~~W~~~~~i~~~---~~~~p~~~~~~g~i~~~~~~~------~~~l~~yd~~t~~~~~v~~~~ 334 (358)
. ..-=++|.|+= ..|.+.....-. ....... ..+..+++..+.. -..++.||.+++.|..+...+
T Consensus 236 ~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 236 GDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred CCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 2 23348888887 677744432211 1333444 3344455444311 235799999999999987655
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.27 E-value=0.0013 Score=57.61 Aligned_cols=44 Identities=14% Similarity=0.366 Sum_probs=39.2
Q ss_pred CchhHHHHHHhcCC-----ccccceeeeccccchhhcCChHhHHHHhhc
Q 041631 1 MYGDAMVEILSTLS-----VKNLLRFKCVCKSWYSLIENPIFISKHLKN 44 (358)
Q Consensus 1 LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~~~~F~~~~~~~ 44 (358)
||||+|.+||.++= .++|.++.+|||.|+-...+|+|.+..+..
T Consensus 110 LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K 158 (366)
T KOG2997|consen 110 LPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK 158 (366)
T ss_pred CCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence 89999999999875 489999999999999999999998876654
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.96 E-value=0.0024 Score=56.60 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=37.2
Q ss_pred hhHHHHHHhcCCccccceeeeccccchhhcCChHhHHHHhh
Q 041631 3 GDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKHLK 43 (358)
Q Consensus 3 ~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~~~ 43 (358)
+++.+.||+.|...+|..+..|||+|+++++++-..++...
T Consensus 84 ~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 84 DHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 88999999999999999999999999999999987665443
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.60 E-value=0.45 Score=43.75 Aligned_cols=154 Identities=15% Similarity=0.170 Sum_probs=94.8
Q ss_pred EEecCCCCceeccc-ccCeeeeecCCcceEEeCCeEEEEEeecC-------CCceEEEEEECCCceEEEecCCCCccccc
Q 041631 179 IYNLRTNSWRDLVC-FKTIHYCIPHSHGCTYLDGLCHWLWELED-------SKHKIIISFDMANEVFQEVQCPDIASSAY 250 (358)
Q Consensus 179 vyss~~~~W~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~-------~~~~~il~fD~~~e~~~~i~~P~~~~~~~ 250 (358)
+|+-++++|+.+.. ..+.|. ...+..|+-.|.+|....... ..+.-+-.||+.+.+|..+.++......+
T Consensus 102 ~Yn~k~~eWkk~~spn~P~pR--sshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RS 179 (521)
T KOG1230|consen 102 SYNTKKNEWKKVVSPNAPPPR--SSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRS 179 (521)
T ss_pred EEeccccceeEeccCCCcCCC--ccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCc
Confidence 78889999999986 223332 222224444475554332211 22456889999999999999988766666
Q ss_pred ccceeEECCeEEEEEecCC-CcE----EEEEEEC--CCeeeEEEEEc--cCC-ccceEEEeeCCcEEEEec-C-------
Q 041631 251 METLDLYHDSLSLLFLNTT-NNH----YEIWVLK--ERIWSKHLSVT--LLG-VEEPLGVWNNGGFFVQSD-S------- 312 (358)
Q Consensus 251 ~~~L~~~~g~L~~~~~~~~-~~~----l~IW~l~--~~~W~~~~~i~--~~~-~~~p~~~~~~g~i~~~~~-~------- 312 (358)
+.+++..+.+|.++....+ ... -+||+.+ ...|.|...=. |.+ -...+.+...|.|++..+ +
T Consensus 180 GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~ 259 (521)
T KOG1230|consen 180 GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKD 259 (521)
T ss_pred cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhh
Confidence 6688999999999873211 111 1566654 48999987621 211 122345555666777654 0
Q ss_pred -----CCCEEEEEeCCC-----CcEEEeeecC
Q 041631 313 -----RPRRLLLYDPNT-----QEMRDLGLRS 334 (358)
Q Consensus 313 -----~~~~l~~yd~~t-----~~~~~v~~~~ 334 (358)
.-..++..++++ -+|++|.-.|
T Consensus 260 ~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g 291 (521)
T KOG1230|consen 260 VDKGTRHSDMFLLKPEDGREDKWVWTKVKPSG 291 (521)
T ss_pred hhcCceeeeeeeecCCcCCCcceeEeeccCCC
Confidence 112368899988 6777775433
No 34
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.02 E-value=0.29 Score=42.33 Aligned_cols=132 Identities=13% Similarity=0.187 Sum_probs=79.1
Q ss_pred EEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecC------C----CceEEEEEECCCceEEEecC-CCCcc
Q 041631 179 IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELED------S----KHKIIISFDMANEVFQEVQC-PDIAS 247 (358)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~------~----~~~~il~fD~~~e~~~~i~~-P~~~~ 247 (358)
+++..|-.||.... ...|-.......++.++|.+|-.....+ + --..|++||+.++.|..-+- |.-..
T Consensus 161 ~ld~~TmtWr~~~T-kg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~ 239 (392)
T KOG4693|consen 161 VLDFATMTWREMHT-KGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG 239 (392)
T ss_pred eEeccceeeeehhc-cCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC
Confidence 78888999998864 1112112233347788899997765431 0 02479999999999986422 11111
Q ss_pred cccccceeEECCeEEEEEecCC---CcEEEEEEECC--CeeeEEEEEccC--CccceEEEeeCCcEEEEec
Q 041631 248 SAYMETLDLYHDSLSLLFLNTT---NNHYEIWVLKE--RIWSKHLSVTLL--GVEEPLGVWNNGGFFVQSD 311 (358)
Q Consensus 248 ~~~~~~L~~~~g~L~~~~~~~~---~~~l~IW~l~~--~~W~~~~~i~~~--~~~~p~~~~~~g~i~~~~~ 311 (358)
........+++|+++++....+ ..--++|..+. ..|.++..=.-. +-.+..++-.++++++-.+
T Consensus 240 GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 240 GRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred cccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 1111267889999999885432 22347899988 789886543321 2223334444666666543
No 35
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.91 E-value=1.3 Score=38.67 Aligned_cols=129 Identities=12% Similarity=0.188 Sum_probs=76.6
Q ss_pred eeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEE-EecCCCCccccc------c---cceeEECCeEEEEE
Q 041631 196 IHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQ-EVQCPDIASSAY------M---ETLDLYHDSLSLLF 265 (358)
Q Consensus 196 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~------~---~~L~~~~g~L~~~~ 265 (358)
+|. .+.+.+.|.-||.+|+-.... ..|+.||+.+++.. ...+|....... . ..+++-+.-|-++.
T Consensus 65 Lp~-~~~GtG~vVYngslYY~~~~s----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 65 LPY-PWQGTGHVVYNGSLYYNKYNS----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred Eec-eeccCCeEEECCcEEEEecCC----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 444 233344788999999877644 48999999999988 778887654311 0 14555566676666
Q ss_pred ecCCC-cEEEEEEECC------CeeeEEEEEccCCccceEEEeeCCcEEEEecC---CCCEEEEEeCCCCcEEEeeec
Q 041631 266 LNTTN-NHYEIWVLKE------RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDS---RPRRLLLYDPNTQEMRDLGLR 333 (358)
Q Consensus 266 ~~~~~-~~l~IW~l~~------~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~---~~~~l~~yd~~t~~~~~v~~~ 333 (358)
...+. ..+.|=.|+. ..|.-.+.=.-..-...+ .|.++..... +..--+.||+.+++-+.+.+.
T Consensus 140 at~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmv----CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 140 ATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMV----CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred ecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeE----eeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 54333 3577777776 445422110000111122 3666666541 123458899988888776653
No 36
>smart00284 OLF Olfactomedin-like domains.
Probab=93.01 E-value=3.7 Score=35.90 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=72.3
Q ss_pred CCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEe-cCCCCccc---c------cccceeEECCeEEEEEecC-CC
Q 041631 202 HSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEV-QCPDIASS---A------YMETLDLYHDSLSLLFLNT-TN 270 (358)
Q Consensus 202 ~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~---~------~~~~L~~~~g~L~~~~~~~-~~ 270 (358)
...+.|+-||.+|+-.... ..|+.||+.+++.... .+|..... . ....|++-+.-|-++.... ..
T Consensus 75 ~GtG~VVYngslYY~~~~s----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFNS----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred ccccEEEECceEEEEecCC----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 3344899999999865443 4799999999998643 45643211 0 1125666666777766543 34
Q ss_pred cEEEEEEECC------CeeeEEEEEccCCccceEEEeeCCcEEEEec---CCCCEEEEEeCCCCcEEEeee
Q 041631 271 NHYEIWVLKE------RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSD---SRPRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 271 ~~l~IW~l~~------~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~---~~~~~l~~yd~~t~~~~~v~~ 332 (358)
..|.|=+|+. ..|.-.+.-.-..-...+ .|.++.... ....--+.||..|++-+.+.+
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmv----CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTYNKRSASNAFMI----CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCCCcccccccEEE----eeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 6788888877 455442211100111122 366666542 123346889998888776654
No 37
>PF13964 Kelch_6: Kelch motif
Probab=92.82 E-value=0.32 Score=30.65 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=29.1
Q ss_pred eEEeCCeEEEEEeecC--CCceEEEEEECCCceEEEec
Q 041631 206 CTYLDGLCHWLWELED--SKHKIIISFDMANEVFQEVQ 241 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i~ 241 (358)
++.++|.+|.+..... .....+..||+++.+|+.++
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 7899999998875543 22568999999999999874
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.23 E-value=9.9 Score=33.49 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=110.8
Q ss_pred eecceEEEeecCCe-eEEEecCccceecCCCCCCCCCCCCC---------cccceEEEeeeCCCCCEEEEEEEEEecCCC
Q 041631 99 PYDGIYCIFGLRDR-ITLWNVATRDSRTLPNYGPTCPPNTK---------VYKTSVGFGLDPNRNDYKLIMIYTYWDERT 168 (358)
Q Consensus 99 s~~GLl~l~~~~~~-~~V~NP~T~~~~~LP~~~~~~~~~~~---------~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 168 (358)
+-+|-|-+...... +-=.||.|++..+.|.....++.+.. ......-.-+|+.+.+++=.-+-- +..
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---~~a 146 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---EHA 146 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---ccC
Confidence 33566665544332 35579999999988876544332110 000001111244333333222211 112
Q ss_pred cccceeeEEEEEecCCCCceeccc------cc-Ceeeeec-----CCcc--eEEeCCeEEEEEeecCCCceEEEEEECCC
Q 041631 169 TELHEFSLCTIYNLRTNSWRDLVC------FK-TIHYCIP-----HSHG--CTYLDGLCHWLWELEDSKHKIIISFDMAN 234 (358)
Q Consensus 169 ~~~~~~e~~~vyss~~~~W~~~~~------~~-~~~~~~~-----~~~~--~v~~~G~lywl~~~~~~~~~~il~fD~~~ 234 (358)
...+..- ||+-..+-|-+... .+ .-....+ ..++ ++.-||.+|+-..-+ ++|...|..+
T Consensus 147 ~~nlet~---vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag----naiaridp~~ 219 (353)
T COG4257 147 DANLETA---VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG----NAIARIDPFA 219 (353)
T ss_pred CCcccce---eeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc----cceEEccccc
Confidence 3466666 89988888854432 01 0000111 2233 455679998766555 4899999999
Q ss_pred ceEEEecCCCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECC--CeeeEEEEEccC-CccceEEEeeCCcEEEEe
Q 041631 235 EVFQEVQCPDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE--RIWSKHLSVTLL-GVEEPLGVWNNGGFFVQS 310 (358)
Q Consensus 235 e~~~~i~~P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~-~~~~p~~~~~~g~i~~~~ 310 (358)
..-.+++.|........ .+... .|++-.-.. ..=.+-..+- .+|.. +.++-. +-..-+.+..-|.+.+..
T Consensus 220 ~~aev~p~P~~~~~gsR-riwsdpig~~wittw----g~g~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 220 GHAEVVPQPNALKAGSR-RIWSDPIGRAWITTW----GTGSLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred CCcceecCCCccccccc-ccccCccCcEEEecc----CCceeeEeCccccccee-eeCCCCCCCcceeeeccCCcEEeec
Confidence 98888888887433211 12111 222222110 0111111111 33432 222211 112234455567777754
Q ss_pred cCCCCEEEEEeCCCCcEEEeeec
Q 041631 311 DSRPRRLLLYDPNTQEMRDLGLR 333 (358)
Q Consensus 311 ~~~~~~l~~yd~~t~~~~~v~~~ 333 (358)
.. .+.+..+|+++.+++.+-+.
T Consensus 294 a~-agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 294 AD-AGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred cc-cCceeecCcccceEEEecCC
Confidence 32 67899999999999998664
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=90.15 E-value=1.3 Score=27.14 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=29.4
Q ss_pred eEEeCCeEEEEEeecC--CCceEEEEEECCCceEEEe
Q 041631 206 CTYLDGLCHWLWELED--SKHKIIISFDMANEVFQEV 240 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i 240 (358)
++.++|.+|-+..... .....+..||+.+.+|+.+
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 7899999998886544 3367999999999999976
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=89.61 E-value=1.2 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=28.9
Q ss_pred eEEeCCeEEEEEee--c--CCCceEEEEEECCCceEEEecC
Q 041631 206 CTYLDGLCHWLWEL--E--DSKHKIIISFDMANEVFQEVQC 242 (358)
Q Consensus 206 ~v~~~G~lywl~~~--~--~~~~~~il~fD~~~e~~~~i~~ 242 (358)
++.++|++|...-. . ......+-.||+++.+|+.++.
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 78889999987765 1 2235688999999999998754
No 41
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.31 E-value=10 Score=35.56 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=61.9
Q ss_pred eEEEEEECCCceEEEecCCCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccCCccceEEEeeC
Q 041631 225 KIIISFDMANEVFQEVQCPDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNN 303 (358)
Q Consensus 225 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~ 303 (358)
.++.+||+.+.+...+..|...........-+. ++...++... ...|.|-..+.++|.-...|. ....-+.+..+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~--~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSd 355 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN--NGHIHLLHAKTKELITSFKIE--GVVSDFTFSSD 355 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc--CceEEeehhhhhhhhheeeec--cEEeeEEEecC
Confidence 589999999999999988887764332233333 3443332222 344444444435555444443 33334555566
Q ss_pred CcEEEEecCCCCEEEEEeCCCCcEEEeee
Q 041631 304 GGFFVQSDSRPRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 304 g~i~~~~~~~~~~l~~yd~~t~~~~~v~~ 332 (358)
++.++...+ .+.++.+|++++...+...
T Consensus 356 sk~l~~~~~-~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 356 SKELLASGG-TGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred CcEEEEEcC-CceEEEEecCCcceEEEEe
Confidence 655554432 6799999999997777544
No 42
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.91 E-value=10 Score=34.87 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=68.8
Q ss_pred cceEEEeecCCeeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCccc---ceeeEE
Q 041631 101 DGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTEL---HEFSLC 177 (358)
Q Consensus 101 ~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~---~~~e~~ 177 (358)
+.-|+..+...+.+|+++.|+....+|..... +.....+.+| + ++..+........... ..+|
T Consensus 76 gskIv~~d~~~~t~vyDt~t~av~~~P~l~~p-----k~~pisv~VG-----~--~LY~m~~~~~~~~~~~~~~~~FE-- 141 (342)
T PF07893_consen 76 GSKIVAVDQSGRTLVYDTDTRAVATGPRLHSP-----KRCPISVSVG-----D--KLYAMDRSPFPEPAGRPDFPCFE-- 141 (342)
T ss_pred CCeEEEEcCCCCeEEEECCCCeEeccCCCCCC-----CcceEEEEeC-----C--eEEEeeccCccccccCccceeEE--
Confidence 34444444444569999999999999875421 1112223332 1 2444433222111111 1667
Q ss_pred EEEec----------CCCCceecccccCeeeeec-----CCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEe--
Q 041631 178 TIYNL----------RTNSWRDLVCFKTIHYCIP-----HSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEV-- 240 (358)
Q Consensus 178 ~vyss----------~~~~W~~~~~~~~~~~~~~-----~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-- 240 (358)
+++. ++-+|+..+. |++..... -.+.+|+ +|.--|+...+.. .+-.+||+.+.+|+..
T Consensus 142 -~l~~~~~~~~~~~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~--~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 142 -ALVYRPPPDDPSPEESWSWRSLPP-PPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR--WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred -EeccccccccccCCCcceEEcCCC-CCccccCCcccceEEEEEEe-cCCeEEEEecCCc--eEEEEEEcCCcceeeccc
Confidence 5522 2236777764 33433211 1223677 8977777554311 3689999999999975
Q ss_pred -cCCCCc
Q 041631 241 -QCPDIA 246 (358)
Q Consensus 241 -~~P~~~ 246 (358)
.+|-.-
T Consensus 217 W~LPF~G 223 (342)
T PF07893_consen 217 WMLPFHG 223 (342)
T ss_pred eecCcCC
Confidence 566543
No 43
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.82 E-value=21 Score=33.69 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=85.7
Q ss_pred ceeeEEEEEecCCCCcee-cccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceE-EEe---cCCCCc
Q 041631 172 HEFSLCTIYNLRTNSWRD-LVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVF-QEV---QCPDIA 246 (358)
Q Consensus 172 ~~~e~~~vyss~~~~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~-~~i---~~P~~~ 246 (358)
..+. +|++.+.+=+. ......... +..+..||.|.-.....+ .|-.||..+... +.+ +.|...
T Consensus 48 ~rvq---ly~~~~~~~~k~~srFk~~v~-----s~~fR~DG~LlaaGD~sG----~V~vfD~k~r~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 48 VRVQ---LYSSVTRSVRKTFSRFKDVVY-----SVDFRSDGRLLAAGDESG----HVKVFDMKSRVILRQLYAHQAPVHV 115 (487)
T ss_pred cEEE---EEecchhhhhhhHHhhcccee-----EEEeecCCeEEEccCCcC----cEEEeccccHHHHHHHhhccCceeE
Confidence 3455 99988854333 221111111 114556798865444333 789999665321 111 223222
Q ss_pred ccccccceeEECCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccC-CccceEEEeeCCcEEEEecCCCCEEEEEeCCCC
Q 041631 247 SSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLL-GVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQ 325 (358)
Q Consensus 247 ~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~-~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~ 325 (358)
. .....++.+.+.+.+ +....+|.+.+.. + ...+... ...+...+.....-++.++++++.+-.||.++.
T Consensus 116 ~-----~f~~~d~t~l~s~sD--d~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 116 T-----KFSPQDNTMLVSGSD--DKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred E-----EecccCCeEEEecCC--CceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 1 222235555555544 6789999999733 2 3333322 344555555444434444445889999999998
Q ss_pred cEEEeeec-CceeEEEEeee--cceeCCCCCC
Q 041631 326 EMRDLGLR-SFWFSVYNFKE--SLIPVKGVDS 354 (358)
Q Consensus 326 ~~~~v~~~-~~~~~~~~y~~--slv~~~~~~~ 354 (358)
+-+.+++. |.+-...+|.+ |+|-..+|++
T Consensus 187 ~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 187 TSRVVELNHGCPVESVLALPSGSLIASAGGNS 218 (487)
T ss_pred CceeEEecCCCceeeEEEcCCCCEEEEcCCCe
Confidence 73333443 34433334444 5777666664
No 44
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.60 E-value=9 Score=34.94 Aligned_cols=120 Identities=15% Similarity=0.110 Sum_probs=66.8
Q ss_pred eEEeC--CeEEEEEeecCCCceEEEEEECCCceEEEe---cCCCCcc----cccc-cceeEE---CCeEEEEEec-----
Q 041631 206 CTYLD--GLCHWLWELEDSKHKIIISFDMANEVFQEV---QCPDIAS----SAYM-ETLDLY---HDSLSLLFLN----- 267 (358)
Q Consensus 206 ~v~~~--G~lywl~~~~~~~~~~il~fD~~~e~~~~i---~~P~~~~----~~~~-~~L~~~---~g~L~~~~~~----- 267 (358)
+++.+ |.+||+++.+ .|...|+..+.-... ++-.... ..++ .++..+ .|+|+++...
T Consensus 189 ~~~~~~~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gs 263 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGS 263 (342)
T ss_dssp -EEETTTTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-
T ss_pred cceECCCCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCC
Confidence 45443 5799988876 599999988764332 2211111 1111 255544 6789887642
Q ss_pred CCCcEEEEEEECCCeeeEEEEEccCCccceEEEeeCCc-EEEEecCCCCEEEEEeCCCCcEEEe
Q 041631 268 TTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGG-FFVQSDSRPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 268 ~~~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~-i~~~~~~~~~~l~~yd~~t~~~~~v 330 (358)
.+...=+||+++-..=.++.+|++..-...+.+..+.+ +++.....+..|+.||..|++..+.
T Consensus 264 HKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred ccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 23567899999984444556665431112466666554 4433221156899999998876654
No 45
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.74 E-value=25 Score=33.16 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=68.3
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCce---EEEecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECCCe
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEV---FQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERI 282 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~---~~~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~~ 282 (358)
....++.+|.++. .+.....|++.|+.+-. |..+-.|..... .-..+...++.|.+........+|.|+-+. ..
T Consensus 283 v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~ 359 (414)
T PF02897_consen 283 VDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV-SLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DG 359 (414)
T ss_dssp EEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE-EEEEEEEETTEEEEEEEETTEEEEEEEETT--T
T ss_pred EEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEcCCCCce-eEEEEEEECCEEEEEEEECCccEEEEEECC-CC
Confidence 3455778887766 33345789999998865 654333332211 011344568898888877666667776666 23
Q ss_pred eeEEEEEccCCccceEEEe---eCCcEEEEec--CCCCEEEEEeCCCCcEEEee
Q 041631 283 WSKHLSVTLLGVEEPLGVW---NNGGFFVQSD--SRPRRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 283 W~~~~~i~~~~~~~p~~~~---~~g~i~~~~~--~~~~~l~~yd~~t~~~~~v~ 331 (358)
|..... .+........+. +...++|... .....++.||+++++.+.+.
T Consensus 360 ~~~~~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 360 KESREI-PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEE-ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred cEEeee-cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 443332 222222112221 2456666544 23568999999999998874
No 46
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=87.56 E-value=23 Score=32.68 Aligned_cols=118 Identities=12% Similarity=0.129 Sum_probs=69.7
Q ss_pred EEeCCeEEEEEeecCCCceEEEEEECCCc------eEEEecCCCCc-cccccc-c-eeEE--CCeEEEEEecCC-----C
Q 041631 207 TYLDGLCHWLWELEDSKHKIIISFDMANE------VFQEVQCPDIA-SSAYME-T-LDLY--HDSLSLLFLNTT-----N 270 (358)
Q Consensus 207 v~~~G~lywl~~~~~~~~~~il~fD~~~e------~~~~i~~P~~~-~~~~~~-~-L~~~--~g~L~~~~~~~~-----~ 270 (358)
...+|..+|.+..+ .|...|+.+. .|..+..-... ...... + +..- +++|+++..... .
T Consensus 202 ~~~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 202 SNKSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred EcCCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 44479999998874 5888896553 23333221110 111111 2 2322 455655442111 2
Q ss_pred cEEEEEEECCCeeeEEEEEccCCccceEEEeeCCc-EEEEecCCCCEEEEEeCCCCcEEE
Q 041631 271 NHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGG-FFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 271 ~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~-i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
..=+||+++-..+..+.+|....-...+.+..+|+ .++......+.+.++|..+++..+
T Consensus 277 ~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 22389999988888888887544444677778887 666554335679999998875444
No 47
>PF13964 Kelch_6: Kelch motif
Probab=87.37 E-value=1.5 Score=27.47 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=23.4
Q ss_pred eCCcEEEEecCC-----CCEEEEEeCCCCcEEEee
Q 041631 302 NNGGFFVQSDSR-----PRRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 302 ~~g~i~~~~~~~-----~~~l~~yd~~t~~~~~v~ 331 (358)
-+++|++..+.. ...+..||++|++|+.+.
T Consensus 10 ~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 10 VGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred ECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 467788876521 357999999999999985
No 48
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=87.36 E-value=5.3 Score=30.98 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=49.1
Q ss_pred EEEEEECCCc--eEEEecCCCCccccc-----------ccceeEECCeEEEEEecC--------CCcEEEEEEECC----
Q 041631 226 IIISFDMANE--VFQEVQCPDIASSAY-----------METLDLYHDSLSLLFLNT--------TNNHYEIWVLKE---- 280 (358)
Q Consensus 226 ~il~fD~~~e--~~~~i~~P~~~~~~~-----------~~~L~~~~g~L~~~~~~~--------~~~~l~IW~l~~---- 280 (358)
+|+.+|+-.+ .++-|++|....... ...++..+|+|-++.... ...++.+|.|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5888898765 678889987664321 125677799998888432 356899999976
Q ss_pred -CeeeEEEEEccC
Q 041631 281 -RIWSKHLSVTLL 292 (358)
Q Consensus 281 -~~W~~~~~i~~~ 292 (358)
.+|.+-+++...
T Consensus 87 ~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 87 SWEWKKDCEVDLS 99 (131)
T ss_pred CCCEEEeEEEEhh
Confidence 789999988753
No 49
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.97 E-value=22 Score=30.73 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=104.9
Q ss_pred eeecceEEEeecC-CeeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeE
Q 041631 98 GPYDGIYCIFGLR-DRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSL 176 (358)
Q Consensus 98 ~s~~GLl~l~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~ 176 (358)
...+|-|.+.+.. ..++.++|.+++...+..+. ..++.++...+.+-|. . .....
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l~v~-~----------~~~~~- 63 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRLYVA-D----------SGGIA- 63 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEEEEE-E----------TTCEE-
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEEEEE-E----------cCceE-
Confidence 3445666666643 35699999999876544332 3455556333333222 1 22334
Q ss_pred EEEEecCCCCceeccccc-Ce-eeeecCCcc--eEEeCCeEEEEEeecCC--Cc--eEEEEEECCCceEEEe----cCCC
Q 041631 177 CTIYNLRTNSWRDLVCFK-TI-HYCIPHSHG--CTYLDGLCHWLWELEDS--KH--KIIISFDMANEVFQEV----QCPD 244 (358)
Q Consensus 177 ~~vyss~~~~W~~~~~~~-~~-~~~~~~~~~--~v~~~G~lywl~~~~~~--~~--~~il~fD~~~e~~~~i----~~P~ 244 (358)
+++..++.++.....+ .- +. ..++ .+--+|.+|........ .. ..|..+|.. .+...+ ..|.
T Consensus 64 --~~d~~~g~~~~~~~~~~~~~~~---~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN 137 (246)
T PF08450_consen 64 --VVDPDTGKVTVLADLPDGGVPF---NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN 137 (246)
T ss_dssp --EEETTTTEEEEEEEEETTCSCT---EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE
T ss_pred --EEecCCCcEEEEeeccCCCccc---CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc
Confidence 6788888777665411 00 11 1122 45567898866553321 12 579999999 444432 2232
Q ss_pred CcccccccceeEE-CCeEEEEEecCCCcEEEEEEECC--CeeeEEEEE-ccCC-ccce--EEEeeCCcEEEEecCCCCEE
Q 041631 245 IASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE--RIWSKHLSV-TLLG-VEEP--LGVWNNGGFFVQSDSRPRRL 317 (358)
Q Consensus 245 ~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i-~~~~-~~~p--~~~~~~g~i~~~~~~~~~~l 317 (358)
.|+.. +|+..++... ....+....++. ..+.....+ .+.. ...| +++..+|.|++.... .+++
T Consensus 138 --------Gi~~s~dg~~lyv~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-~~~I 207 (246)
T PF08450_consen 138 --------GIAFSPDGKTLYVADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-GGRI 207 (246)
T ss_dssp --------EEEEETTSSEEEEEET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-TTEE
T ss_pred --------ceEECCcchheeeccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-CCEE
Confidence 34434 5654443322 244544444443 346555444 2222 1124 556678999888542 6799
Q ss_pred EEEeCCCCcEEEeeecC
Q 041631 318 LLYDPNTQEMRDLGLRS 334 (358)
Q Consensus 318 ~~yd~~t~~~~~v~~~~ 334 (358)
..||++.+.++++....
T Consensus 208 ~~~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 208 VVFDPDGKLLREIELPV 224 (246)
T ss_dssp EEEETTSCEEEEEE-SS
T ss_pred EEECCCccEEEEEcCCC
Confidence 99999977777787763
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.83 E-value=29 Score=31.94 Aligned_cols=116 Identities=11% Similarity=0.239 Sum_probs=72.4
Q ss_pred CCeEEEEEeecCCCceEEEEEECCCce--E---EEecCCCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECC--C
Q 041631 210 DGLCHWLWELEDSKHKIIISFDMANEV--F---QEVQCPDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE--R 281 (358)
Q Consensus 210 ~G~lywl~~~~~~~~~~il~fD~~~e~--~---~~i~~P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~--~ 281 (358)
+|..-|....+. ..|..|++..+. + ..+.+|.....+ .++.. +|+..++... ...++.++.++. +
T Consensus 154 dg~~v~v~dlG~---D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR---h~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 154 DGRFVYVPDLGA---DRVYVYDIDDDTGKLTPVDSIKVPPGSGPR---HLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDG 226 (345)
T ss_dssp TSSEEEEEETTT---TEEEEEEE-TTS-TEEEEEEEECSTTSSEE---EEEE-TTSSEEEEEET-TTTEEEEEEEETTTT
T ss_pred CCCEEEEEecCC---CEEEEEEEeCCCceEEEeeccccccCCCCc---EEEEcCCcCEEEEecC-CCCcEEEEeecccCC
Confidence 566555655443 478888877655 4 335666655433 34433 6666555543 478999999994 8
Q ss_pred eeeEEEEEccCC-------ccceEEEeeCCcEEEEecCCCCEEEEEeC--CCCcEEEeee
Q 041631 282 IWSKHLSVTLLG-------VEEPLGVWNNGGFFVQSDSRPRRLLLYDP--NTQEMRDLGL 332 (358)
Q Consensus 282 ~W~~~~~i~~~~-------~~~p~~~~~~g~i~~~~~~~~~~l~~yd~--~t~~~~~v~~ 332 (358)
.++...++...+ ...-+.+..+|+.++......+.+..|++ ++++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 888888877541 12335666788766664433678888887 6678888764
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=84.80 E-value=24 Score=30.17 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=66.9
Q ss_pred EeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCCCcccccc---cceeE--ECC--eEEEEEec---CCCcEEEEEE
Q 041631 208 YLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYM---ETLDL--YHD--SLSLLFLN---TTNNHYEIWV 277 (358)
Q Consensus 208 ~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~---~~L~~--~~g--~L~~~~~~---~~~~~l~IW~ 277 (358)
.+||.+ .+... ..++..|+.|+++..++.|........ ..++- ..+ ++..+... .....++|..
T Consensus 3 sCnGLl-c~~~~-----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 3 PCDGLI-CFSYG-----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred ccceEE-EEecC-----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 468877 34332 369999999999999876643211000 01111 011 22222211 1235788999
Q ss_pred ECCCeeeEEEEEccC-CccceEEEeeCCcEEEEecC---CC-CEEEEEeCCCCcEEE-eeec
Q 041631 278 LKERIWSKHLSVTLL-GVEEPLGVWNNGGFFVQSDS---RP-RRLLLYDPNTQEMRD-LGLR 333 (358)
Q Consensus 278 l~~~~W~~~~~i~~~-~~~~p~~~~~~g~i~~~~~~---~~-~~l~~yd~~t~~~~~-v~~~ 333 (358)
+..++|.......+. ..... ++.-+|.++..... .. ..++.||++++++++ +..+
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred eCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 988899987632211 11121 33346766666431 01 179999999999995 5443
No 52
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.20 E-value=26 Score=30.19 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=69.7
Q ss_pred eEEe--CCeEEEEEeecCCCceEEEEEECCCceEEEecCCCCcccccccceeEE--CCeEEEEEecCCCcEEEEEEECCC
Q 041631 206 CTYL--DGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLY--HDSLSLLFLNTTNNHYEIWVLKER 281 (358)
Q Consensus 206 ~v~~--~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~L~~~--~g~L~~~~~~~~~~~l~IW~l~~~ 281 (358)
+++. +|.+||...... .|..+|+.+.+.+.+.+|... .+... +|+|.+... ..+.+.-++.+
T Consensus 5 p~~d~~~g~l~~~D~~~~----~i~~~~~~~~~~~~~~~~~~~------G~~~~~~~g~l~v~~~----~~~~~~d~~~g 70 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGG----RIYRVDPDTGEVEVIDLPGPN------GMAFDRPDGRLYVADS----GGIAVVDPDTG 70 (246)
T ss_dssp EEEETTTTEEEEEETTTT----EEEEEETTTTEEEEEESSSEE------EEEEECTTSEEEEEET----TCEEEEETTTT
T ss_pred eEEECCCCEEEEEEcCCC----EEEEEECCCCeEEEEecCCCc------eEEEEccCCEEEEEEc----CceEEEecCCC
Confidence 4555 699999876554 899999999999988887721 22322 577766542 23333333337
Q ss_pred eeeEEEEEccC--Cccce--EEEeeCCcEEEEecC-----CC--CEEEEEeCCCCcEEEee
Q 041631 282 IWSKHLSVTLL--GVEEP--LGVWNNGGFFVQSDS-----RP--RRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 282 ~W~~~~~i~~~--~~~~p--~~~~~~g~i~~~~~~-----~~--~~l~~yd~~t~~~~~v~ 331 (358)
+++........ +..+| +++.++|.+++.... .. ++++.++.+ ++.+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 78777776311 34445 455568888887641 01 569999998 6766654
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=82.00 E-value=32 Score=31.72 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=46.8
Q ss_pred EEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceE-----------EEecCCCCcc
Q 041631 179 IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVF-----------QEVQCPDIAS 247 (358)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~-----------~~i~~P~~~~ 247 (358)
-|+-++.+|+..+. -.+|+ ..+ +.++...=-|...........+-+.|+.+..- ..+..|.. .
T Consensus 203 sfDt~~~~W~~~Gd-W~LPF---~G~-a~y~~el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~~-~ 276 (342)
T PF07893_consen 203 SFDTESHEWRKHGD-WMLPF---HGQ-AEYVPELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEELFPPEE-W 276 (342)
T ss_pred EEEcCCcceeeccc-eecCc---CCc-cEECCCcCeEEEeccCCCCcEEEEEeccccccCCCCCcceecccccccccc-c
Confidence 56666789999985 34554 222 66665555566665543224789999887432 22233322 1
Q ss_pred cccccceeEE-CCeEEEEEe
Q 041631 248 SAYMETLDLY-HDSLSLLFL 266 (358)
Q Consensus 248 ~~~~~~L~~~-~g~L~~~~~ 266 (358)
......|+.+ +|+.|++-.
T Consensus 277 ~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 277 RHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccCceEEECCCCCEEEEEE
Confidence 1112267766 678877763
No 54
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.31 E-value=37 Score=29.86 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=76.9
Q ss_pred cceeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCc-eEEEecCCCCcccc
Q 041631 171 LHEFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANE-VFQEVQCPDIASSA 249 (358)
Q Consensus 171 ~~~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e-~~~~i~~P~~~~~~ 249 (358)
...+. .|+..++.=..... ++. .........+++.+|-++...+ ..+.||..+- ....++.|.+
T Consensus 67 ~S~l~---~~d~~tg~~~~~~~---l~~-~~FgEGit~~~d~l~qLTWk~~----~~f~yd~~tl~~~~~~~y~~E---- 131 (264)
T PF05096_consen 67 QSSLR---KVDLETGKVLQSVP---LPP-RYFGEGITILGDKLYQLTWKEG----TGFVYDPNTLKKIGTFPYPGE---- 131 (264)
T ss_dssp EEEEE---EEETTTSSEEEEEE----TT-T--EEEEEEETTEEEEEESSSS----EEEEEETTTTEEEEEEE-SSS----
T ss_pred cEEEE---EEECCCCcEEEEEE---CCc-cccceeEEEECCEEEEEEecCC----eEEEEccccceEEEEEecCCc----
Confidence 45555 78887765332221 222 1122336788999999998775 7899999863 3344555531
Q ss_pred cccceeEECCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccCCccceEEEe-----eCCcEEEEecCCCCEEEEEeCCC
Q 041631 250 YMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVW-----NNGGFFVQSDSRPRRLLLYDPNT 324 (358)
Q Consensus 250 ~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~-----~~g~i~~~~~~~~~~l~~yd~~t 324 (358)
+..|+..+..|.+-. .+=.|+.++........+|....-..|+... -+|.|+-.... .+.++..|++|
T Consensus 132 -GWGLt~dg~~Li~SD-----GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~-td~I~~Idp~t 204 (264)
T PF05096_consen 132 -GWGLTSDGKRLIMSD-----GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQ-TDRIVRIDPET 204 (264)
T ss_dssp ---EEEECSSCEEEE------SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETT-SSEEEEEETTT
T ss_pred -ceEEEcCCCEEEEEC-----CccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCC-CCeEEEEeCCC
Confidence 124554444544422 2334555665445566666543223333322 27888887763 67899999999
Q ss_pred CcEEEee
Q 041631 325 QEMRDLG 331 (358)
Q Consensus 325 ~~~~~v~ 331 (358)
+++..+-
T Consensus 205 G~V~~~i 211 (264)
T PF05096_consen 205 GKVVGWI 211 (264)
T ss_dssp -BEEEEE
T ss_pred CeEEEEE
Confidence 9998864
No 55
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.84 E-value=46 Score=30.58 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=68.1
Q ss_pred eCCe-EEEEEeecCCCceEEEEEECC--CceEEEec----CCCCcccc-cccceeEE-CCeEEEEEecCCCcEEEEEEEC
Q 041631 209 LDGL-CHWLWELEDSKHKIIISFDMA--NEVFQEVQ----CPDIASSA-YMETLDLY-HDSLSLLFLNTTNNHYEIWVLK 279 (358)
Q Consensus 209 ~~G~-lywl~~~~~~~~~~il~fD~~--~e~~~~i~----~P~~~~~~-~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~ 279 (358)
-+|. +|...... ..|.+|++. +.+++.++ +|...... ....+... +|+..++... ...++.++.++
T Consensus 201 pdg~~~Yv~~e~s----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d 275 (345)
T PF10282_consen 201 PDGKYAYVVNELS----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLD 275 (345)
T ss_dssp TTSSEEEEEETTT----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEEC
T ss_pred CCcCEEEEecCCC----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEe
Confidence 3664 66544333 356666666 66665542 34432221 11145555 6776555544 36899999996
Q ss_pred C--CeeeEEEEEccC-CccceEEEeeCCcEEEEecCCCCEEEEE--eCCCCcEEEeee
Q 041631 280 E--RIWSKHLSVTLL-GVEEPLGVWNNGGFFVQSDSRPRRLLLY--DPNTQEMRDLGL 332 (358)
Q Consensus 280 ~--~~W~~~~~i~~~-~~~~p~~~~~~g~i~~~~~~~~~~l~~y--d~~t~~~~~v~~ 332 (358)
+ +.-+++..+... ..-+-+.+.++|+.++......+.+..| |.++++++.+..
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 5 555555555432 2334566667887777654325666666 568999998863
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=79.31 E-value=0.46 Score=46.42 Aligned_cols=41 Identities=24% Similarity=0.497 Sum_probs=36.7
Q ss_pred CchhHHHHHHhcCCccccceeeeccccchhhcCChHhHHHH
Q 041631 1 MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPIFISKH 41 (358)
Q Consensus 1 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F~~~~ 41 (358)
||.++...||..|+.++++++++||+.|+.+..+.....+.
T Consensus 111 lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 111 LPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred ccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 68889999999999999999999999999999987776643
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=78.99 E-value=0.53 Score=43.62 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=32.8
Q ss_pred CchhHHHHHHhcCCccccceeeeccccchhhcCChH
Q 041631 1 MYGDAMVEILSTLSVKNLLRFKCVCKSWYSLIENPI 36 (358)
Q Consensus 1 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~ 36 (358)
||.+++..|++-|..+++.|++.+||.|.-+..+..
T Consensus 75 LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 75 LPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 799999999999999999999999999998876543
No 58
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.60 E-value=34 Score=29.82 Aligned_cols=160 Identities=20% Similarity=0.185 Sum_probs=82.1
Q ss_pred EEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCC----ceEEEecCCCCc-ccccccc
Q 041631 179 IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMAN----EVFQEVQCPDIA-SSAYMET 253 (358)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~----e~~~~i~~P~~~-~~~~~~~ 253 (358)
+|+..+++++.... ....++....+.-||.+.-..... .....+-.|+..+ ..|.. .+... ..+....
T Consensus 50 ~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~-~G~~~ir~~~p~~~~~~~~w~e--~~~~m~~~RWYpT 122 (243)
T PF07250_consen 50 EYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDN-DGNKAIRIFTPCTSDGTCDWTE--SPNDMQSGRWYPT 122 (243)
T ss_pred EEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCC-ccccceEEEecCCCCCCCCceE--CcccccCCCcccc
Confidence 68888888877753 122333333556677655222211 1234577777654 34443 33221 1122224
Q ss_pred eeEE-CCeEEEEEecCCCcEEEEEEECC-----CeeeEEEEEc---cCCccceEEEeeCCcEEEEecCCCCEEEEEeCCC
Q 041631 254 LDLY-HDSLSLLFLNTTNNHYEIWVLKE-----RIWSKHLSVT---LLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNT 324 (358)
Q Consensus 254 L~~~-~g~L~~~~~~~~~~~l~IW~l~~-----~~W~~~~~i~---~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t 324 (358)
...+ +|++.++.... ..+.+.|=-.. ..|....... +..++--+.+..+|+||+... ..-..||.++
T Consensus 123 ~~~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an---~~s~i~d~~~ 198 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN---RGSIIYDYKT 198 (243)
T ss_pred ceECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc---CCcEEEeCCC
Confidence 4445 88888877542 45566654322 1221111111 112333344557999988865 5677789999
Q ss_pred CcE-EEee-ecCceeEEEEeeecceeCC
Q 041631 325 QEM-RDLG-LRSFWFSVYNFKESLIPVK 350 (358)
Q Consensus 325 ~~~-~~v~-~~~~~~~~~~y~~slv~~~ 350 (358)
+++ +++- +++. .+.++...+-+-++
T Consensus 199 n~v~~~lP~lPg~-~R~YP~sgssvmLP 225 (243)
T PF07250_consen 199 NTVVRTLPDLPGG-PRNYPASGSSVMLP 225 (243)
T ss_pred CeEEeeCCCCCCC-ceecCCCcceEEec
Confidence 976 4442 3332 55666666544433
No 59
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=76.78 E-value=50 Score=28.69 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=67.5
Q ss_pred ceEEeCCeEEEEEeecCCCceEEEEEECCCce-EEEecCCCCccccc---------ccceeEECCeEEEEEec-CCCcEE
Q 041631 205 GCTYLDGLCHWLWELEDSKHKIIISFDMANEV-FQEVQCPDIASSAY---------METLDLYHDSLSLLFLN-TTNNHY 273 (358)
Q Consensus 205 ~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~-~~~i~~P~~~~~~~---------~~~L~~~~g~L~~~~~~-~~~~~l 273 (358)
..|+.+|.+|+..... ..|+.||++++. .....+|....... ...+++.+.-|-++... +....+
T Consensus 72 g~VVynGs~yynk~~t----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~i 147 (249)
T KOG3545|consen 72 GHVVYNGSLYYNKAGT----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTI 147 (249)
T ss_pred ceEEEcceEEeeccCC----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcE
Confidence 3799999999876443 479999999954 33445555432211 12556655556555533 334556
Q ss_pred EEEEECC------CeeeEEEEEccCCccceEEEeeCCcEEEEec-C-CCCEE-EEEeCCCCcEEEeeec
Q 041631 274 EIWVLKE------RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSD-S-RPRRL-LLYDPNTQEMRDLGLR 333 (358)
Q Consensus 274 ~IW~l~~------~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~-~-~~~~l-~~yd~~t~~~~~v~~~ 333 (358)
.|=.|+. ..|.-... ..... -++.-.|.++.... . ....+ +.||..+++-+.+.++
T Consensus 148 v~skLdp~tl~~e~tW~T~~~--k~~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTTLP--KRSAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred EeeccCHHHhheeeeeccccC--CCCcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 6677765 44422111 11111 11112366666654 1 23334 7999998888777653
No 60
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=74.81 E-value=8 Score=23.83 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=20.2
Q ss_pred eEEe-CCeEEEEEeecC--CCceEEEEEECCCceEEEe
Q 041631 206 CTYL-DGLCHWLWELED--SKHKIIISFDMANEVFQEV 240 (358)
Q Consensus 206 ~v~~-~G~lywl~~~~~--~~~~~il~fD~~~e~~~~i 240 (358)
++.+ ++.+|-..-... .....+..||+.+.+|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4445 467775554332 1245789999999999988
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=73.80 E-value=76 Score=29.70 Aligned_cols=108 Identities=6% Similarity=0.002 Sum_probs=58.9
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCce--EEEecCCCCccccc-------ccceeEECCeEEEEEecCCCcEEEEE
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEV--FQEVQCPDIASSAY-------METLDLYHDSLSLLFLNTTNNHYEIW 276 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~-------~~~L~~~~g~L~~~~~~~~~~~l~IW 276 (358)
++..+|.+|.....+ .+.+||..+.+ |+. +++....... ...++..+|++++... ...+.-.
T Consensus 65 Pvv~~~~vy~~~~~g-----~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~al 135 (394)
T PRK11138 65 PAVAYNKVYAADRAG-----LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYAL 135 (394)
T ss_pred cEEECCEEEEECCCC-----eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEE
Confidence 688899999765543 69999987654 442 3332111000 0123445677665332 2233222
Q ss_pred EECC--CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEE
Q 041631 277 VLKE--RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMR 328 (358)
Q Consensus 277 ~l~~--~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~ 328 (358)
-.+. ..|.... .......|+.. ++.+++... ++.++.+|.+|++..
T Consensus 136 d~~tG~~~W~~~~--~~~~~ssP~v~--~~~v~v~~~--~g~l~ald~~tG~~~ 183 (394)
T PRK11138 136 NAEDGEVAWQTKV--AGEALSRPVVS--DGLVLVHTS--NGMLQALNESDGAVK 183 (394)
T ss_pred ECCCCCCcccccC--CCceecCCEEE--CCEEEEECC--CCEEEEEEccCCCEe
Confidence 2222 5676542 11112334442 566777665 678999999888754
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.09 E-value=63 Score=30.25 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccC--Ccc-ceEEEe-eCCcEEEEecCCCCEEEEEeCCCCcEEEe
Q 041631 258 HDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLL--GVE-EPLGVW-NNGGFFVQSDSRPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 258 ~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~--~~~-~p~~~~-~~g~i~~~~~~~~~~l~~yd~~t~~~~~v 330 (358)
+|+++++... ..++.+|-+++ |..+.+.... +.+ ---|++ .+..++.... .+.+++.||.++++.-.+
T Consensus 406 d~k~~LvnL~--~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 406 DGKLALVNLQ--DQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKLLAV 477 (519)
T ss_pred CCcEEEEEcc--cCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCceeEe
Confidence 7899988865 68999999995 3332221111 111 112222 2335555543 377899999888887665
No 63
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.74 E-value=12 Score=20.58 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.3
Q ss_pred eCCcEEEEecCCCCEEEEEeCCCCcEE
Q 041631 302 NNGGFFVQSDSRPRRLLLYDPNTQEMR 328 (358)
Q Consensus 302 ~~g~i~~~~~~~~~~l~~yd~~t~~~~ 328 (358)
.+|.+++... ++.++.+|.++++..
T Consensus 5 ~~~~v~~~~~--~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGST--DGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcC--CCEEEEEEcccCcEE
Confidence 4566777766 789999999888754
No 64
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=70.42 E-value=83 Score=28.43 Aligned_cols=96 Identities=6% Similarity=0.064 Sum_probs=52.9
Q ss_pred eEEEEEECCC-ceEEEecC-CCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECC-CeeeEEEEEccCCccceEEE
Q 041631 225 KIIISFDMAN-EVFQEVQC-PDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE-RIWSKHLSVTLLGVEEPLGV 300 (358)
Q Consensus 225 ~~il~fD~~~-e~~~~i~~-P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~p~~~ 300 (358)
..|-.||+.+ .++..++. +.... ...+... +|+..++... ....+.+|..++ +.+.....+....-...+.+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~---~~~l~~spd~~~lyv~~~-~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQ---VQPMVISPDKRHLYVGVR-PEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCC---CccEEECCCCCEEEEEEC-CCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 3688888853 34444422 21111 1134333 5654444433 357888999986 66766666543222234555
Q ss_pred eeCCcEEEEecCCCCEEEEEeCCC
Q 041631 301 WNNGGFFVQSDSRPRRLLLYDPNT 324 (358)
Q Consensus 301 ~~~g~i~~~~~~~~~~l~~yd~~t 324 (358)
..+|+.++......+.+.+||+++
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECC
Confidence 667766665432267889998864
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=70.08 E-value=96 Score=29.00 Aligned_cols=104 Identities=12% Similarity=0.126 Sum_probs=57.7
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCce--EEEecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECC--C
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEV--FQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKE--R 281 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~--~ 281 (358)
++..+|.+|.....+ .+.++|..+.+ |+. +.... ..+...+|++++...+ ..+...-.++ .
T Consensus 252 P~v~~~~vy~~~~~g-----~l~ald~~tG~~~W~~-~~~~~------~~~~~~~~~vy~~~~~---g~l~ald~~tG~~ 316 (394)
T PRK11138 252 PVVVGGVVYALAYNG-----NLVALDLRSGQIVWKR-EYGSV------NDFAVDGGRIYLVDQN---DRVYALDTRGGVE 316 (394)
T ss_pred cEEECCEEEEEEcCC-----eEEEEECCCCCEEEee-cCCCc------cCcEEECCEEEEEcCC---CeEEEEECCCCcE
Confidence 678899999766543 69999998754 543 22111 1233445666654422 2222222222 3
Q ss_pred eeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 282 IWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 282 ~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
.|.... ........|+. .++.|++... ++.++.+|.++++..-
T Consensus 317 ~W~~~~-~~~~~~~sp~v--~~g~l~v~~~--~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 317 LWSQSD-LLHRLLTAPVL--YNGYLVVGDS--EGYLHWINREDGRFVA 359 (394)
T ss_pred EEcccc-cCCCcccCCEE--ECCEEEEEeC--CCEEEEEECCCCCEEE
Confidence 443211 11111233543 3677888776 7889999999987654
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=68.10 E-value=1e+02 Score=28.52 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=53.7
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCceEE-EecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECC--Ce
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEVFQ-EVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKE--RI 282 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~--~~ 282 (358)
++..+|.+|.....+ .+.+||..+.+-. ..+++..... ..+..++.+.+... ...+.-+-.+. ..
T Consensus 61 p~v~~~~v~v~~~~g-----~v~a~d~~tG~~~W~~~~~~~~~~----~p~v~~~~v~v~~~---~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 61 PAVAGGKVYAADADG-----TVVALDAETGKRLWRVDLDERLSG----GVGADGGLVFVGTE---KGEVIALDAEDGKEL 128 (377)
T ss_pred eEEECCEEEEECCCC-----eEEEEEccCCcEeeeecCCCCccc----ceEEcCCEEEEEcC---CCEEEEEECCCCcEe
Confidence 677888998665443 6999998765432 2344443221 22233444443221 22333333322 44
Q ss_pred eeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcE
Q 041631 283 WSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEM 327 (358)
Q Consensus 283 W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~ 327 (358)
|.... .......|+. .++.+++... ++.++.+|.++++.
T Consensus 129 W~~~~--~~~~~~~p~v--~~~~v~v~~~--~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 129 WRAKL--SSEVLSPPLV--ANGLVVVRTN--DGRLTALDAATGER 167 (377)
T ss_pred eeecc--CceeecCCEE--ECCEEEEECC--CCeEEEEEcCCCce
Confidence 54321 1111222333 3566666655 67899999987764
No 67
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.05 E-value=59 Score=28.86 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=68.3
Q ss_pred EeeeecceEEEeecCCe-eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCccccee
Q 041631 96 LGGPYDGIYCIFGLRDR-ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEF 174 (358)
Q Consensus 96 ~~~s~~GLl~l~~~~~~-~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 174 (358)
+++.-+|-|-+..-..+ +...||.++.--.+|.+..... ..-.+.-|+- .-+++.+.. .-.+
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-------gsRriwsdpi----g~~wittwg------~g~l 256 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-------GSRRIWSDPI----GRAWITTWG------TGSL 256 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-------cccccccCcc----CcEEEeccC------Ccee
Confidence 44444555554432222 3778999997777776653111 1111222321 122332211 2233
Q ss_pred eEEEEEecCCCCceecccccCeeeeecCCcceEEeCCe-EEEEEeecCCCceEEEEEECCCceEEEecCCCCcc
Q 041631 175 SLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGL-CHWLWELEDSKHKIIISFDMANEVFQEVQCPDIAS 247 (358)
Q Consensus 175 e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~ 247 (358)
. -|+..+.+|..-+ +|. ....+.++++|.. .-|+..-.. ..|..||.++++|+++++|....
T Consensus 257 ~---rfdPs~~sW~eyp----LPg-s~arpys~rVD~~grVW~sea~a---gai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 257 H---RFDPSVTSWIEYP----LPG-SKARPYSMRVDRHGRVWLSEADA---GAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred e---EeCcccccceeee----CCC-CCCCcceeeeccCCcEEeecccc---CceeecCcccceEEEecCCCCCC
Confidence 3 7888888888665 222 1122336777653 446644332 58999999999999998887543
No 68
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=65.69 E-value=93 Score=27.17 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=70.0
Q ss_pred EEecCCC-CceecccccCeeeeecCCcc-eEEeCCeEEEEEeecCCCceEEEEEECC-CceEEEe---cCCCCccccccc
Q 041631 179 IYNLRTN-SWRDLVCFKTIHYCIPHSHG-CTYLDGLCHWLWELEDSKHKIIISFDMA-NEVFQEV---QCPDIASSAYME 252 (358)
Q Consensus 179 vyss~~~-~W~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~il~fD~~-~e~~~~i---~~P~~~~~~~~~ 252 (358)
+||...+ +|........... ...+. ...-+|.+|.+.... ......++.-.. .++|+.. .+|.... ..
T Consensus 138 ~~S~D~G~tW~~~~~~~~~~~--~~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~---~~ 211 (275)
T PF13088_consen 138 YYSDDGGKTWSSGSPIPDGQG--ECEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPNS---SI 211 (275)
T ss_dssp EEESSTTSSEEEEEECECSEE--EEEEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCCE---EE
T ss_pred EEeCCCCceeeccccccccCC--cceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCcccC---Cc
Confidence 4665554 7988864211111 11111 223578999777663 222445555554 4578753 4444321 11
Q ss_pred ceeEE-CCeEEEEEec-CCCcEEEEEEECC--CeeeEEEEEccCC---ccce-EEEeeCCcEEE
Q 041631 253 TLDLY-HDSLSLLFLN-TTNNHYEIWVLKE--RIWSKHLSVTLLG---VEEP-LGVWNNGGFFV 308 (358)
Q Consensus 253 ~L~~~-~g~L~~~~~~-~~~~~l~IW~l~~--~~W~~~~~i~~~~---~~~p-~~~~~~g~i~~ 308 (358)
.+..+ +|++.++... .....+.|+.-.+ ..|.....|...+ ...| +...+||+|.+
T Consensus 212 ~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 212 SLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred eEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 34444 7888888863 2357899988877 8999998887543 3333 44456777654
No 69
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=65.16 E-value=14 Score=26.51 Aligned_cols=34 Identities=38% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEEeeC-CcEEEEecC----------------CCCEEEEEeCCCCcEEEee
Q 041631 298 LGVWNN-GGFFVQSDS----------------RPRRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 298 ~~~~~~-g~i~~~~~~----------------~~~~l~~yd~~t~~~~~v~ 331 (358)
+.+.++ |.|+|...+ ..++|+.||++|++.+.+.
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh
Confidence 455555 788887641 2568999999999988864
No 70
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=65.06 E-value=1.4e+02 Score=28.91 Aligned_cols=68 Identities=19% Similarity=0.329 Sum_probs=35.9
Q ss_pred CcEEEEEEECC-CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEeeecCceeEEEEeee
Q 041631 270 NNHYEIWVLKE-RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRSFWFSVYNFKE 344 (358)
Q Consensus 270 ~~~l~IW~l~~-~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~y~~ 344 (358)
...+.+|- +. -+|+++.. ++ ...++++..|.+.+-.. .+..++.|.+++.+-.+...+.+..+..|.+
T Consensus 389 dk~v~lW~-~~k~~wt~~~~-d~---~~~~~fhpsg~va~Gt~--~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp 457 (626)
T KOG2106|consen 389 DKHVRLWN-DHKLEWTKIIE-DP---AECADFHPSGVVAVGTA--TGRWFVLDTETQDLVTIHTDNEQLSVVRYSP 457 (626)
T ss_pred cceEEEcc-CCceeEEEEec-Cc---eeEeeccCcceEEEeec--cceEEEEecccceeEEEEecCCceEEEEEcC
Confidence 56788888 44 78887653 11 12233344453444344 5667777777666655554433233333433
No 71
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=64.96 E-value=94 Score=26.99 Aligned_cols=104 Identities=9% Similarity=0.108 Sum_probs=55.6
Q ss_pred EEEEEECCCceE-EEecCC--CCcccc-cccceeEE-CCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccCCccceEEE
Q 041631 226 IIISFDMANEVF-QEVQCP--DIASSA-YMETLDLY-HDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGV 300 (358)
Q Consensus 226 ~il~fD~~~e~~-~~i~~P--~~~~~~-~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~ 300 (358)
.|..+|+++.+. ..+... ...... ....+... +|+..++... ...++.+|-++. |.....+........+.+
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKT--YEVLDYLLVGQRVWQLAF 256 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECCC--CcEEEEEEeCCCcceEEE
Confidence 688899988654 333321 110000 00123322 5665444432 245788886653 444443322222234556
Q ss_pred eeCCcEEEEecCCCCEEEEEeCCCCcE-EEeee
Q 041631 301 WNNGGFFVQSDSRPRRLLLYDPNTQEM-RDLGL 332 (358)
Q Consensus 301 ~~~g~i~~~~~~~~~~l~~yd~~t~~~-~~v~~ 332 (358)
..+|+.++.....++.+..||+++++. +++..
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 667776665432267899999999885 55554
No 72
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=63.86 E-value=25 Score=26.41 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=28.8
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEE
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIY 161 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 161 (358)
..+.||.|+.|. |..+.. .....+.+.+++..+.|.|+...
T Consensus 11 Vm~~d~~tk~W~--P~~~~~------~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 11 VMVYDDSNKKWV--PAGGGS------QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred eeEEcCCCCcEE--cCCCCC------CCcceEEEEEcCCCCEEEEEEee
Confidence 488999999855 433310 12456778889989999999764
No 73
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.17 E-value=1.3e+02 Score=27.87 Aligned_cols=105 Identities=8% Similarity=-0.015 Sum_probs=59.0
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCceEEEe-cCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECC--Ce
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEV-QCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKE--RI 282 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~--~~ 282 (358)
++..+|.+|.....+ .+.++|..+.+..+- ..+.. ......+|++++... ...+..+-.++ ..
T Consensus 237 p~~~~~~vy~~~~~g-----~l~a~d~~tG~~~W~~~~~~~------~~p~~~~~~vyv~~~---~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 237 PVVDGGQVYAVSYQG-----RVAALDLRSGRVLWKRDASSY------QGPAVDDNRLYVTDA---DGVVVALDRRSGSEL 302 (377)
T ss_pred cEEECCEEEEEEcCC-----EEEEEECCCCcEEEeeccCCc------cCceEeCCEEEEECC---CCeEEEEECCCCcEE
Confidence 567788998765543 699999877543221 22111 123344666655431 34455555544 45
Q ss_pred eeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 283 WSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 283 W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
|.... +.......|+. .++.+++... ++.++.+|.+++++.-
T Consensus 303 W~~~~-~~~~~~ssp~i--~g~~l~~~~~--~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 303 WKNDE-LKYRQLTAPAV--VGGYLVVGDF--EGYLHWLSREDGSFVA 344 (377)
T ss_pred Ecccc-ccCCccccCEE--ECCEEEEEeC--CCEEEEEECCCCCEEE
Confidence 65421 11112233443 3567777766 7899999998877654
No 74
>smart00612 Kelch Kelch domain.
Probab=59.80 E-value=11 Score=22.52 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=15.5
Q ss_pred cceeeEEEEEecCCCCceeccc
Q 041631 171 LHEFSLCTIYNLRTNSWRDLVC 192 (358)
Q Consensus 171 ~~~~e~~~vyss~~~~W~~~~~ 192 (358)
...++ +|+.+++.|+..+.
T Consensus 14 ~~~v~---~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVE---VYDPETNKWTPLPS 32 (47)
T ss_pred eeeEE---EECCCCCeEccCCC
Confidence 44677 99999999998764
No 75
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=59.79 E-value=18 Score=21.02 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=17.8
Q ss_pred CcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 304 GGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 304 g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
|.+++... .+.++.+|.+|++..=
T Consensus 1 ~~v~~~~~--~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVGTP--DGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEETT--TSEEEEEETTTTSEEE
T ss_pred CEEEEeCC--CCEEEEEECCCCCEEE
Confidence 34566655 7899999999998653
No 76
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=58.07 E-value=1.1e+02 Score=25.69 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=87.7
Q ss_pred ecceEEEeecCCeeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEE
Q 041631 100 YDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTI 179 (358)
Q Consensus 100 ~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~v 179 (358)
.+|.+........++.+|+.||+...--..+.. .. .. ... + +=+|+... . ...+. .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~--~~--~~~-~----~~~v~v~~---~-----~~~l~---~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----IS--GA--PVV-D----GGRVYVGT---S-----DGSLY---A 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GG--SG--EEE-E----TTEEEEEE---T-----TSEEE---E
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----cc--ce--eee-c----cccccccc---c-----eeeeE---e
Confidence 677777776666679999999976533322211 00 01 011 0 11222221 1 11334 5
Q ss_pred EecCCC--Ccee-cccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceE--EE-ecCCCCcccc---c
Q 041631 180 YNLRTN--SWRD-LVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVF--QE-VQCPDIASSA---Y 250 (358)
Q Consensus 180 yss~~~--~W~~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~--~~-i~~P~~~~~~---~ 250 (358)
++..+| .|+. ....+.... . ........++.+|..... ..|.++|+++.+- .. +..|...... .
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGV-R-SSSSPAVDGDRLYVGTSS-----GKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCST-B---SEEEEETTEEEEEETC-----SEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred cccCCcceeeeecccccccccc-c-cccCceEecCEEEEEecc-----CcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 665555 6884 432111111 1 111133335666654433 2799999887654 32 2223321110 0
Q ss_pred --ccceeEECCeEEEEEecCCCcEEEEEEECCC--eeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCc
Q 041631 251 --METLDLYHDSLSLLFLNTTNNHYEIWVLKER--IWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQE 326 (358)
Q Consensus 251 --~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~--~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~ 326 (358)
...+...+|.+++.... ...+.+ -++.+ .|.+. +. ... ......++.+++... .+.++.+|++|++
T Consensus 164 ~~~~~~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~~--~~~-~~~~~~~~~l~~~~~--~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--IS--GIY-SLPSVDGGTLYVTSS--DGRLYALDLKTGK 233 (238)
T ss_dssp TEEEEEECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--SS---EC-ECEECCCTEEEEEET--TTEEEEEETTTTE
T ss_pred ccccceEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--CC--Ccc-CCceeeCCEEEEEeC--CCEEEEEECCCCC
Confidence 01233335654443332 223444 44443 36222 21 111 112234666666665 7899999999998
Q ss_pred EE
Q 041631 327 MR 328 (358)
Q Consensus 327 ~~ 328 (358)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 77
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.49 E-value=86 Score=32.53 Aligned_cols=72 Identities=13% Similarity=0.335 Sum_probs=45.7
Q ss_pred ECCeEEEEEecCCCcEEEEEEECC-CeeeEEEEEccC-CccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEe
Q 041631 257 YHDSLSLLFLNTTNNHYEIWVLKE-RIWSKHLSVTLL-GVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 257 ~~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~-~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v 330 (358)
..+.|=++....++..+.+|.|.+ +.|+.--.=+.. ++...++ +..-++++..++ ++.+-+||++.++--..
T Consensus 214 fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf-hp~q~lIlSnsE-DksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF-HPHQDLILSNSE-DKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe-cCccceeEecCC-CccEEEEecccccceee
Confidence 355555555555688999999999 889864222222 3333333 444566666553 67899999987765444
No 78
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=56.32 E-value=1.6e+02 Score=26.79 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=26.5
Q ss_pred eEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEeee
Q 041631 297 PLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 297 p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~~ 332 (358)
.+++.+++++++.... +..++.||++.+-+..|..
T Consensus 192 ~iGiA~~~k~imsas~-dt~i~lw~lkGq~L~~idt 226 (420)
T KOG2096|consen 192 NIGIAGNAKYIMSASL-DTKICLWDLKGQLLQSIDT 226 (420)
T ss_pred EEeecCCceEEEEecC-CCcEEEEecCCceeeeecc
Confidence 4666677777776543 6789999999888888764
No 79
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=55.83 E-value=1.2e+02 Score=25.45 Aligned_cols=129 Identities=15% Similarity=0.139 Sum_probs=69.6
Q ss_pred EEecCCC--CceecccccCeeeeecCCcc-eEEeCCeEEEEEeecCCCceEEEEEECCCceEE-EecCCCCcccccccce
Q 041631 179 IYNLRTN--SWRDLVCFKTIHYCIPHSHG-CTYLDGLCHWLWELEDSKHKIIISFDMANEVFQ-EVQCPDIASSAYMETL 254 (358)
Q Consensus 179 vyss~~~--~W~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~L 254 (358)
.++..++ .|+..-. +... .... .+.-+|.+|..... ..+.++|..+.+.. ...++..... ..
T Consensus 7 ~~d~~tG~~~W~~~~~-~~~~----~~~~~~~~~~~~v~~~~~~-----~~l~~~d~~tG~~~W~~~~~~~~~~----~~ 72 (238)
T PF13360_consen 7 ALDPRTGKELWSYDLG-PGIG----GPVATAVPDGGRVYVASGD-----GNLYALDAKTGKVLWRFDLPGPISG----AP 72 (238)
T ss_dssp EEETTTTEEEEEEECS-SSCS----SEEETEEEETTEEEEEETT-----SEEEEEETTTSEEEEEEECSSCGGS----GE
T ss_pred EEECCCCCEEEEEECC-CCCC----CccceEEEeCCEEEEEcCC-----CEEEEEECCCCCEEEEeeccccccc----ee
Confidence 6777665 5877431 1110 1111 44578888865322 37999998665432 2344443322 23
Q ss_pred eEECCeEEEEEecCCCcEEEEEEEC--C--CeeeE-EEEEccCCccceEEE-eeCCcEEEEecCCCCEEEEEeCCCCcEE
Q 041631 255 DLYHDSLSLLFLNTTNNHYEIWVLK--E--RIWSK-HLSVTLLGVEEPLGV-WNNGGFFVQSDSRPRRLLLYDPNTQEMR 328 (358)
Q Consensus 255 ~~~~g~L~~~~~~~~~~~l~IW~l~--~--~~W~~-~~~i~~~~~~~p~~~-~~~g~i~~~~~~~~~~l~~yd~~t~~~~ 328 (358)
...++.+++...+ . .|+.++ + ..|.. ...-+......+... ..++.+++... .+.++.+|+++++..
T Consensus 73 ~~~~~~v~v~~~~---~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTSD---G--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--SGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTEEEEEETT---S--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--CSEEEEEETTTTEEE
T ss_pred eecccccccccce---e--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--cCcEEEEecCCCcEE
Confidence 4557777666522 3 455554 3 67874 332222222222221 23566777776 689999999998873
No 80
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=55.82 E-value=1.7e+02 Score=27.04 Aligned_cols=106 Identities=11% Similarity=0.078 Sum_probs=58.5
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCce--EEEecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECC---
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEV--FQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKE--- 280 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~--- 280 (358)
++..+|++|.....+ .|.+||.++.+ |+.-... ....... .+...+|++.+-... . .++.|+.
T Consensus 64 ~~~~dg~v~~~~~~G-----~i~A~d~~~g~~~W~~~~~~-~~~~~~~-~~~~~~G~i~~g~~~--g---~~y~ld~~~G 131 (370)
T COG1520 64 PADGDGTVYVGTRDG-----NIFALNPDTGLVKWSYPLLG-AVAQLSG-PILGSDGKIYVGSWD--G---KLYALDASTG 131 (370)
T ss_pred cEeeCCeEEEecCCC-----cEEEEeCCCCcEEecccCcC-cceeccC-ceEEeCCeEEEeccc--c---eEEEEECCCC
Confidence 489999999875544 59999998876 6543332 0111111 223337775543322 1 6677666
Q ss_pred -CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcE
Q 041631 281 -RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEM 327 (358)
Q Consensus 281 -~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~ 327 (358)
..|.....- ...+..+.. ..++.+++... ++.++..|.++++.
T Consensus 132 ~~~W~~~~~~-~~~~~~~~v-~~~~~v~~~s~--~g~~~al~~~tG~~ 175 (370)
T COG1520 132 TLVWSRNVGG-SPYYASPPV-VGDGTVYVGTD--DGHLYALNADTGTL 175 (370)
T ss_pred cEEEEEecCC-CeEEecCcE-EcCcEEEEecC--CCeEEEEEccCCcE
Confidence 445443332 000111111 13566666655 67888888887765
No 81
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=55.24 E-value=1.3e+02 Score=28.38 Aligned_cols=139 Identities=13% Similarity=0.208 Sum_probs=69.4
Q ss_pred eeecceEEEeec----CC-eeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccc
Q 041631 98 GPYDGIYCIFGL----RD-RITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELH 172 (358)
Q Consensus 98 ~s~~GLl~l~~~----~~-~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 172 (358)
+--+.||+|.-- .. +++|.|..|++..++.........-.......+.=||-=.+++||++-... ...
T Consensus 235 A~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~-------~~l 307 (448)
T PF12458_consen 235 ARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDM-------DGL 307 (448)
T ss_pred eecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccC-------CCc
Confidence 334567777642 21 569999999998888755421100000001222224444456666543211 122
Q ss_pred eeeEEEEEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCCCccccccc
Q 041631 173 EFSLCTIYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYME 252 (358)
Q Consensus 173 ~~e~~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~ 252 (358)
.++ |.+.+ |. . ...+|..-. ...+.+.+++||+-..+. ..|..+...
T Consensus 308 ~F~------------r~vrS----PN----G------EDvLYvF~~-~~~g~~~Ll~YN~I~k~v---~tPi~chG~--- 354 (448)
T PF12458_consen 308 EFE------------RKVRS----PN----G------EDVLYVFYA-REEGRYLLLPYNLIRKEV---ATPIICHGY--- 354 (448)
T ss_pred eEE------------EEecC----CC----C------ceEEEEEEE-CCCCcEEEEechhhhhhh---cCCeeccce---
Confidence 222 22221 10 0 124554433 233457889999877554 456555432
Q ss_pred ceeEE-CCeEEEEEecCCC----cEEEEEEE
Q 041631 253 TLDLY-HDSLSLLFLNTTN----NHYEIWVL 278 (358)
Q Consensus 253 ~L~~~-~g~L~~~~~~~~~----~~l~IW~l 278 (358)
+.+ +|+|+++....+. .-|+||.-
T Consensus 355 --alf~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 355 --ALFEDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred --eEecCCEEEEEecCCCCcceeccceeecC
Confidence 223 8999998854221 34677763
No 82
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=54.95 E-value=58 Score=28.83 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=43.4
Q ss_pred ceeEE-CCeEEEEEecCCCcEEEEEEECC-CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcE
Q 041631 253 TLDLY-HDSLSLLFLNTTNNHYEIWVLKE-RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEM 327 (358)
Q Consensus 253 ~L~~~-~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~ 327 (358)
.+.+. +|.||... +...++.+|-|.+ .. .+.++......-+++..+.-.+..-. +..+-.||++++..
T Consensus 197 t~~vSpDGslcasG--gkdg~~~LwdL~~~k~---lysl~a~~~v~sl~fspnrywL~~at--~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 197 TVTVSPDGSLCASG--GKDGEAMLWDLNEGKN---LYSLEAFDIVNSLCFSPNRYWLCAAT--ATSIKIWDLESKAV 266 (315)
T ss_pred EEEECCCCCEEecC--CCCceEEEEEccCCce---eEeccCCCeEeeEEecCCceeEeecc--CCceEEEeccchhh
Confidence 45555 89998865 3478999999998 33 55555444444555555554444444 45677777777654
No 83
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=54.76 E-value=1.6e+02 Score=26.49 Aligned_cols=121 Identities=9% Similarity=0.126 Sum_probs=63.6
Q ss_pred EeCCeEEEEEeecCCCceEEEEEECC--CceEEE---ec-CCCCccc-ccccceeEE-CCeEEEEEecCCCcEEEEEEEC
Q 041631 208 YLDGLCHWLWELEDSKHKIIISFDMA--NEVFQE---VQ-CPDIASS-AYMETLDLY-HDSLSLLFLNTTNNHYEIWVLK 279 (358)
Q Consensus 208 ~~~G~lywl~~~~~~~~~~il~fD~~--~e~~~~---i~-~P~~~~~-~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~ 279 (358)
.=+|...+.+.... ..|.+||+. +.++.. +. .|..... .....+... +|+..++.. .....+.+|.++
T Consensus 183 ~pdg~~lyv~~~~~---~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~-~~~~~I~v~~i~ 258 (330)
T PRK11028 183 HPNQQYAYCVNELN---SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD-RTASLISVFSVS 258 (330)
T ss_pred CCCCCEEEEEecCC---CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec-CCCCeEEEEEEe
Confidence 34555444444322 468888876 334433 32 2332111 111122222 666555442 336799999997
Q ss_pred C--CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEE--eCCCCcEEEeee
Q 041631 280 E--RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLY--DPNTQEMRDLGL 332 (358)
Q Consensus 280 ~--~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~y--d~~t~~~~~v~~ 332 (358)
. ..+.....+......+-+.+..+|+.++......+.+..| |.+++.++.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 259 EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 6 5666666654322223456667786666543224566666 456778877753
No 84
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=53.73 E-value=33 Score=21.07 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=14.5
Q ss_pred eEEEEEECCCceEEEe
Q 041631 225 KIIISFDMANEVFQEV 240 (358)
Q Consensus 225 ~~il~fD~~~e~~~~i 240 (358)
..+.+||+.+.+|+.+
T Consensus 19 nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRI 34 (49)
T ss_pred cCEEEEECCCCEEEEC
Confidence 4689999999999988
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=52.10 E-value=61 Score=29.01 Aligned_cols=62 Identities=10% Similarity=0.169 Sum_probs=39.4
Q ss_pred CcEEEEEEECC-CeeeEEEEEccCCccce---EEEeeCCcEEE-EecCCCCEEEEEeCCCCcEEEeeecCce
Q 041631 270 NNHYEIWVLKE-RIWSKHLSVTLLGVEEP---LGVWNNGGFFV-QSDSRPRRLLLYDPNTQEMRDLGLRSFW 336 (358)
Q Consensus 270 ~~~l~IW~l~~-~~W~~~~~i~~~~~~~p---~~~~~~g~i~~-~~~~~~~~l~~yd~~t~~~~~v~~~~~~ 336 (358)
+.++++|.+++ +.-+-+-.. .+..| ++..++|.-++ ... ++.+-.||+.+++...|+....+
T Consensus 49 D~tVR~wevq~~g~~~~ka~~---~~~~PvL~v~WsddgskVf~g~~--Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQ---SHDGPVLDVCWSDDGSKVFSGGC--DKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CCceEEEEEecCCcccchhhh---ccCCCeEEEEEccCCceEEeecc--CCceEEEEccCCCeeeeeecccc
Confidence 57899999987 222221111 12222 23235664444 444 78899999999999999987655
No 86
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=51.27 E-value=1.4e+02 Score=26.12 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=39.4
Q ss_pred cEEEEEEECC--------CeeeEEEEE--ccCCccceEEEe---eCCcEEEEecCCCCEEEEEeCCCCcEEEee
Q 041631 271 NHYEIWVLKE--------RIWSKHLSV--TLLGVEEPLGVW---NNGGFFVQSDSRPRRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 271 ~~l~IW~l~~--------~~W~~~~~i--~~~~~~~p~~~~---~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~ 331 (358)
..+.=|...+ ..|+.+--+ +..++....+++ +++.|++..+ +..++.+|++++++++..
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG--D~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG--DGVIYQVDLEDGRIQREY 152 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC--CeEEEEEEecCCEEEEEE
Confidence 5666677655 456554322 222333344444 4688999987 889999999999999873
No 87
>PLN02772 guanylate kinase
Probab=51.14 E-value=1.1e+02 Score=28.80 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=46.5
Q ss_pred eEEeCCeEEEEEeecCC--CceEEEEEECCCceEEEecC---CCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEEC
Q 041631 206 CTYLDGLCHWLWELEDS--KHKIIISFDMANEVFQEVQC---PDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLK 279 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~--~~~~il~fD~~~e~~~~i~~---P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~ 279 (358)
++.+++.+|.+....+. ....+..||..+.+|..-.. |+.....+ .-+.+ ++++.++-.. ....=.||.|+
T Consensus 30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~Gh--Sa~v~~~~rilv~~~~-~~~~~~~w~l~ 106 (398)
T PLN02772 30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGY--SAVVLNKDRILVIKKG-SAPDDSIWFLE 106 (398)
T ss_pred eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcc--eEEEECCceEEEEeCC-CCCccceEEEE
Confidence 88899999977753332 34589999999999986322 22222222 33444 6777776633 34457899987
Q ss_pred C
Q 041631 280 E 280 (358)
Q Consensus 280 ~ 280 (358)
-
T Consensus 107 ~ 107 (398)
T PLN02772 107 V 107 (398)
T ss_pred c
Confidence 4
No 88
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=51.03 E-value=3.6e+02 Score=29.30 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=41.0
Q ss_pred EEEEEECCCceEEEecCCCCccccccccee-EEC-CeEEEEEecCCCcEEEEEEECCCeeeEEEEEccC
Q 041631 226 IIISFDMANEVFQEVQCPDIASSAYMETLD-LYH-DSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLL 292 (358)
Q Consensus 226 ~il~fD~~~e~~~~i~~P~~~~~~~~~~L~-~~~-g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~ 292 (358)
.|+-|.-...+-..+.+|..........|. +.+ +-|+++........+.+|...+.+|-++..+...
T Consensus 267 ~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~ 335 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS 335 (1265)
T ss_pred cEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc
Confidence 577777666665555444433222112333 334 4455555544556699999999999999887654
No 89
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=51.02 E-value=1.9e+02 Score=26.10 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=56.9
Q ss_pred eEEEEEECCCc-----eEEEe---cCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECCCe-eeEEEEEccCCcc
Q 041631 225 KIIISFDMANE-----VFQEV---QCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERI-WSKHLSVTLLGVE 295 (358)
Q Consensus 225 ~~il~fD~~~e-----~~~~i---~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~~-W~~~~~i~~~~~~ 295 (358)
..|+.|++.+. ++..+ ..+..+ ..+..++|+|.+.. +..+.|+.+++.. +.+........
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V-----~ai~~~~~~lv~~~----g~~l~v~~l~~~~~l~~~~~~~~~~-- 130 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPV-----TAICSFNGRLVVAV----GNKLYVYDLDNSKTLLKKAFYDSPF-- 130 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-E-----EEEEEETTEEEEEE----TTEEEEEEEETTSSEEEEEEE-BSS--
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcc-----eEhhhhCCEEEEee----cCEEEEEEccCcccchhhheecceE--
Confidence 46777777774 44332 222211 15777899965544 5799999999955 77777665422
Q ss_pred ceEEEee-CCcEEEEecCCCCEEEEEeCCCCcEEEeeecC
Q 041631 296 EPLGVWN-NGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRS 334 (358)
Q Consensus 296 ~p~~~~~-~g~i~~~~~~~~~~l~~yd~~t~~~~~v~~~~ 334 (358)
....+.- ++.|++....+.-.++.||.+.+++..+....
T Consensus 131 ~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~ 170 (321)
T PF03178_consen 131 YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDY 170 (321)
T ss_dssp SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEES
T ss_pred EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecC
Confidence 2222222 34444443322335667788778888887544
No 90
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.16 E-value=26 Score=20.48 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=15.8
Q ss_pred eCCcEEEEecCCCCEEEEEeCCC
Q 041631 302 NNGGFFVQSDSRPRRLLLYDPNT 324 (358)
Q Consensus 302 ~~g~i~~~~~~~~~~l~~yd~~t 324 (358)
.++.+|+... ++.++.+|.+|
T Consensus 20 ~~g~vyv~~~--dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTG--DGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-T--TSEEEEEETT-
T ss_pred ECCEEEEEcC--CCEEEEEeCCC
Confidence 3677888877 79999999875
No 91
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=49.57 E-value=2.1e+02 Score=26.24 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=54.1
Q ss_pred EECCeEEEEEecCCCcEEEEEEECC--CeeeEEEEEccCC--c-----cceEEEeeCCcEEEEecCCCC--EEEEEeCCC
Q 041631 256 LYHDSLSLLFLNTTNNHYEIWVLKE--RIWSKHLSVTLLG--V-----EEPLGVWNNGGFFVQSDSRPR--RLLLYDPNT 324 (358)
Q Consensus 256 ~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~~--~-----~~p~~~~~~g~i~~~~~~~~~--~l~~yd~~t 324 (358)
.-+|+++++... -..++.+|..++ ++-+.+.++...+ + ..-+.+..+|+++.......+ .+|..|..+
T Consensus 199 Hpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 199 HPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred cCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 338999888754 468999999998 7777777776542 2 334666678888777542122 357778888
Q ss_pred CcEEEeeec
Q 041631 325 QEMRDLGLR 333 (358)
Q Consensus 325 ~~~~~v~~~ 333 (358)
++++-++..
T Consensus 278 g~L~~~~~~ 286 (346)
T COG2706 278 GKLELVGIT 286 (346)
T ss_pred CEEEEEEEe
Confidence 888887763
No 92
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=48.96 E-value=47 Score=24.80 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.3
Q ss_pred eEEEecCcc-ceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEE
Q 041631 113 ITLWNVATR-DSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIY 161 (358)
Q Consensus 113 ~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 161 (358)
.++.||.|+ .|. |..+. ...+.+-+|+..+.|+||.+.
T Consensus 13 V~~yd~~tKk~Wv--Ps~~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 13 VFQIDPKTKKNWI--PASKH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEECCCCcceeE--eCCCC---------ceeEEEEecCCCcEEEEEEec
Confidence 589999987 554 44431 356778899999999999863
No 93
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=46.82 E-value=2.2e+02 Score=25.75 Aligned_cols=108 Identities=17% Similarity=0.024 Sum_probs=61.6
Q ss_pred CeEEEEEeecCCCceEEEEEECCCceEEEecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECC-CeeeEEEEE
Q 041631 211 GLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKE-RIWSKHLSV 289 (358)
Q Consensus 211 G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i 289 (358)
+.+||..-.+. .|..+|..+.+-+.+..|...... .+...+|.|..+. ..+.++..+. ..|++....
T Consensus 37 ~~L~w~DI~~~----~i~r~~~~~g~~~~~~~p~~~~~~---~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 37 GALLWVDILGG----RIHRLDPETGKKRVFPSPGGFSSG---ALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CEEEEEeCCCC----eEEEecCCcCceEEEECCCCcccc---eeecCCCeEEEEc-----cccEEEeccCCceeEEeccc
Confidence 45788776654 799999999988988888876321 2233344444322 2233333343 555554444
Q ss_pred ccC-Cccce--EEEeeCCcEEEEecC----------CCCEEEEEeCCCCcEEEe
Q 041631 290 TLL-GVEEP--LGVWNNGGFFVQSDS----------RPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 290 ~~~-~~~~p--~~~~~~g~i~~~~~~----------~~~~l~~yd~~t~~~~~v 330 (358)
... +..+| ..+..+|.+++-... ..+.|+.||+.++..+.+
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 322 22333 344457888886542 123699999854444443
No 94
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.57 E-value=3.4e+02 Score=27.81 Aligned_cols=116 Identities=9% Similarity=0.099 Sum_probs=63.9
Q ss_pred eEEeCCeEEEEEeecC-------CCceEEEEEECCCceEEEecCCCCccccc-----cc--ce-eEE-CCeEEEEEecCC
Q 041631 206 CTYLDGLCHWLWELED-------SKHKIIISFDMANEVFQEVQCPDIASSAY-----ME--TL-DLY-HDSLSLLFLNTT 269 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~-------~~~~~il~fD~~~e~~~~i~~P~~~~~~~-----~~--~L-~~~-~g~L~~~~~~~~ 269 (358)
..+..+.-||+..... .....+++-+..++.|....+|....-+. .. .+ .+. ++-|++-+. .
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~--k 328 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS--K 328 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC--c
Confidence 5788888888885431 23468999999999999999998653321 11 11 122 334443332 2
Q ss_pred CcEEEEEEECCCeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCC
Q 041631 270 NNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQ 325 (358)
Q Consensus 270 ~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~ 325 (358)
..++-||.++..+.+++..=.. .-..-+.+.+||.++..... ++++-+||..++
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~e-DgKVKvWn~~Sg 382 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHS-DRITSLAYSPDGQLIATGAE-DGKVKVWNTQSG 382 (893)
T ss_pred cceEEEEEeeccceeeeccccc-cceeeEEECCCCcEEEeccC-CCcEEEEeccCc
Confidence 5689999988644444332000 00112333445544444322 445555555543
No 95
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.15 E-value=2.4e+02 Score=26.09 Aligned_cols=82 Identities=7% Similarity=0.028 Sum_probs=52.3
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECC--CceEEEe-cCCCCcccccccceeEECCeEEEEEecCCCc------EEEEE
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMA--NEVFQEV-QCPDIASSAYMETLDLYHDSLSLLFLNTTNN------HYEIW 276 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~--~e~~~~i-~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~------~l~IW 276 (358)
+..++..+|--.-+.+ ..-..+|+. +..|+.+ ..|....... .-+..+|+|.++....... .-++.
T Consensus 42 Ga~ig~~~YVGLGs~G---~afy~ldL~~~~k~W~~~a~FpG~~rnqa--~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y 116 (381)
T COG3055 42 GALIGDTVYVGLGSAG---TAFYVLDLKKPGKGWTKIADFPGGARNQA--VAAVIGGKLYVFGGYGKSVSSSPQVFNDAY 116 (381)
T ss_pred cceecceEEEEeccCC---ccceehhhhcCCCCceEcccCCCcccccc--hheeeCCeEEEeeccccCCCCCceEeeeeE
Confidence 6677778885444322 244555554 4689887 4476554322 4466799999988432222 23667
Q ss_pred EECC--CeeeEEEEEccC
Q 041631 277 VLKE--RIWSKHLSVTLL 292 (358)
Q Consensus 277 ~l~~--~~W~~~~~i~~~ 292 (358)
+.+. .+|.++.+..|.
T Consensus 117 ~y~p~~nsW~kl~t~sP~ 134 (381)
T COG3055 117 RYDPSTNSWHKLDTRSPT 134 (381)
T ss_pred EecCCCChhheecccccc
Confidence 7776 899999998765
No 96
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.09 E-value=2.6e+02 Score=25.92 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=69.6
Q ss_pred EEecCCCCceecccccCeeeeecCCcceEEeCCeEEEEEeec-----CCCceEEEEEECCCceEEEe-cCCCCccccccc
Q 041631 179 IYNLRTNSWRDLVCFKTIHYCIPHSHGCTYLDGLCHWLWELE-----DSKHKIIISFDMANEVFQEV-QCPDIASSAYME 252 (358)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~ 252 (358)
+|+..++.|+.....|-.+. ..+ ++...|..-++.... ........-|.....+|..+ ++|.........
T Consensus 200 sy~p~~n~W~~~G~~pf~~~---aGs-a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eG 275 (381)
T COG3055 200 SYDPSTNQWRNLGENPFYGN---AGS-AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEG 275 (381)
T ss_pred ccccccchhhhcCcCcccCc---cCc-ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccc
Confidence 67888899999986333333 221 344444433333221 11234566667778899877 556554433211
Q ss_pred ----ceeEECCeEEEEEe-----------------cC---CCcEEEEEEECCCeeeEEEEEccCCccceEEEeeCCcEEE
Q 041631 253 ----TLDLYHDSLSLLFL-----------------NT---TNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNNGGFFV 308 (358)
Q Consensus 253 ----~L~~~~g~L~~~~~-----------------~~---~~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~g~i~~ 308 (358)
.-...+|.+.+... ++ ..-+=+||.+++++|..+..++. ++..=+.+.-++.+++
T Consensus 276 vAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~-~l~YG~s~~~nn~vl~ 354 (381)
T COG3055 276 VAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ-GLAYGVSLSYNNKVLL 354 (381)
T ss_pred cceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC-CccceEEEecCCcEEE
Confidence 11233444444331 11 12345899999999999988864 3332333334555666
Q ss_pred Eec
Q 041631 309 QSD 311 (358)
Q Consensus 309 ~~~ 311 (358)
..+
T Consensus 355 IGG 357 (381)
T COG3055 355 IGG 357 (381)
T ss_pred Ecc
Confidence 654
No 97
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=45.06 E-value=70 Score=31.64 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred EEEEEECCCceEEE----ecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECCCeeeEEE-EEccCCccceEEE
Q 041631 226 IIISFDMANEVFQE----VQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHL-SVTLLGVEEPLGV 300 (358)
Q Consensus 226 ~il~fD~~~e~~~~----i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~-~i~~~~~~~p~~~ 300 (358)
.|.-||.+...|+. +..|......- -.|.-..|.+.++... ++.++..|-++.+.=+-.. .++...-..-.++
T Consensus 75 ~i~l~dt~~~~fr~ee~~lk~~~aH~nAi-fDl~wapge~~lVsas-GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf 152 (720)
T KOG0321|consen 75 GIILFDTKSIVFRLEERQLKKPLAHKNAI-FDLKWAPGESLLVSAS-GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECF 152 (720)
T ss_pred ceeeecchhhhcchhhhhhccccccccee-EeeccCCCceeEEEcc-CCceeeeeeeccceeecceeecccccccchhhh
Confidence 69999999988881 11122111100 0233335888888865 4689999999972211111 1111111223455
Q ss_pred eeCCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 301 WNNGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 301 ~~~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
...+..+|+.++++++++.||.+-+.+..
T Consensus 153 ~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 153 MPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred ccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 55666777776667888888887776443
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=42.79 E-value=2.4e+02 Score=24.94 Aligned_cols=108 Identities=18% Similarity=0.120 Sum_probs=62.9
Q ss_pred eCCeEEEEEeecCCCceEEEEEECCCceE-EEecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECCCeeeEEE
Q 041631 209 LDGLCHWLWELEDSKHKIIISFDMANEVF-QEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHL 287 (358)
Q Consensus 209 ~~G~lywl~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~ 287 (358)
-+|.+|=-+ +......|-.+|+.+++. ...++|..... ..++..+++|..++-. ....-++-.+. ..++.
T Consensus 54 ~~g~LyEST--G~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg---EGit~~~d~l~qLTWk--~~~~f~yd~~t--l~~~~ 124 (264)
T PF05096_consen 54 DDGTLYEST--GLYGQSSLRKVDLETGKVLQSVPLPPRYFG---EGITILGDKLYQLTWK--EGTGFVYDPNT--LKKIG 124 (264)
T ss_dssp ETTEEEEEE--CSTTEEEEEEEETTTSSEEEEEE-TTT--E---EEEEEETTEEEEEESS--SSEEEEEETTT--TEEEE
T ss_pred CCCEEEEeC--CCCCcEEEEEEECCCCcEEEEEECCccccc---eeEEEECCEEEEEEec--CCeEEEEcccc--ceEEE
Confidence 467777332 223457899999999876 56788876532 2678889999998865 34554554432 33444
Q ss_pred EEccCCccceEEEee-CCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 288 SVTLLGVEEPLGVWN-NGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 288 ~i~~~~~~~p~~~~~-~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
++.... .--++.. +..+++..+ ..+|...|+++-+..+
T Consensus 125 ~~~y~~--EGWGLt~dg~~Li~SDG--S~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 125 TFPYPG--EGWGLTSDGKRLIMSDG--SSRLYFLDPETFKEVR 163 (264)
T ss_dssp EEE-SS--S--EEEECSSCEEEE-S--SSEEEEE-TTT-SEEE
T ss_pred EEecCC--cceEEEcCCCEEEEECC--ccceEEECCcccceEE
Confidence 443321 1122223 456777776 7899999998765544
No 99
>PTZ00420 coronin; Provisional
Probab=41.26 E-value=3.8e+02 Score=26.77 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=58.3
Q ss_pred eCCeEEEEEeecCCCceEEEEEECCCceEE-EecCCCCcccccccceeE----ECCeEEEEEecC--CCcEEEEEEECC-
Q 041631 209 LDGLCHWLWELEDSKHKIIISFDMANEVFQ-EVQCPDIASSAYMETLDL----YHDSLSLLFLNT--TNNHYEIWVLKE- 280 (358)
Q Consensus 209 ~~G~lywl~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~L~~----~~g~L~~~~~~~--~~~~l~IW~l~~- 280 (358)
-+|.+.-.+..+ ..|..+|+++.+.. .+....... ....+.. .++...+.+... ...++.||-+..
T Consensus 177 pdG~lLat~s~D----~~IrIwD~Rsg~~i~tl~gH~g~~--~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 177 IKGNLLSGTCVG----KHMHIIDPRKQEIASSFHIHDGGK--NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred CCCCEEEEEecC----CEEEEEECCCCcEEEEEecccCCc--eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 356654333222 36888999887542 232222111 0001111 233333333221 235899999986
Q ss_pred CeeeEEEEEccC-CccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEee
Q 041631 281 RIWSKHLSVTLL-GVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 281 ~~W~~~~~i~~~-~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~ 331 (358)
..=.....++.. ....|..-..+|.+|+...+ ++.+.+|+..++.+..+.
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG-D~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKG-DGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEEC-CCeEEEEEccCCcEEeec
Confidence 432222233221 12223433345777766532 778999999888776664
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=40.35 E-value=2.8e+02 Score=25.00 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=54.7
Q ss_pred EEEEEECCC---ceEEEecCCCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECC--CeeeEEEEEccC--Cccce
Q 041631 226 IIISFDMAN---EVFQEVQCPDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE--RIWSKHLSVTLL--GVEEP 297 (358)
Q Consensus 226 ~il~fD~~~---e~~~~i~~P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i~~~--~~~~p 297 (358)
.|--||+++ +-|+.+.++........ .|--. +|+..++... . .. +-+++. +. .+.++... ....|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~--~-s~-~~~lDAf~G~--~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTN--A-SF-IYLLDAFDGT--VKSTFSGYPNAGNLP 235 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCCEEEEEeC--C-Cc-EEEEEccCCc--EeeeEeeccCCCCcc
Confidence 788888765 46777666543222211 22222 7887777743 1 11 222333 33 44555433 22223
Q ss_pred --EEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEe
Q 041631 298 --LGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 298 --~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v 330 (358)
..+..++++++.... ++.+..||++++.....
T Consensus 236 ~~a~ftPds~Fvl~gs~-dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSD-DGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeEEECCCCcEEEEecC-CCcEEEEEcCCCcEeeE
Confidence 334479999998763 57899999988775554
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=39.94 E-value=1.3e+02 Score=28.66 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=47.9
Q ss_pred CcEEEEEEECCCeeeEEEEEccC--CccceEEEeeCCc-EEEEecCCCCEEEEEeCCCCcEEEeeec-Cce-----eEEE
Q 041631 270 NNHYEIWVLKERIWSKHLSVTLL--GVEEPLGVWNNGG-FFVQSDSRPRRLLLYDPNTQEMRDLGLR-SFW-----FSVY 340 (358)
Q Consensus 270 ~~~l~IW~l~~~~W~~~~~i~~~--~~~~p~~~~~~g~-i~~~~~~~~~~l~~yd~~t~~~~~v~~~-~~~-----~~~~ 340 (358)
+..+.|..++...=.++..|.+. ++. -..+..+|. .++..+ +..-++.||+++.+++++.-. |.. ..-.
T Consensus 234 d~~lrifqvDGk~N~~lqS~~l~~fPi~-~a~f~p~G~~~i~~s~-rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQSIHLEKFPIQ-KAEFAPNGHSVIFTSG-RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred CCcEEEEEecCccChhheeeeeccCccc-eeeecCCCceEEEecc-cceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 56777777776222255555443 332 233444665 444433 155699999999999998643 221 2223
Q ss_pred EeeecceeCCCCCCC
Q 041631 341 NFKESLIPVKGVDSF 355 (358)
Q Consensus 341 ~y~~slv~~~~~~~~ 355 (358)
.+..+.|-+.+.+++
T Consensus 312 Shd~~fia~~G~~G~ 326 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGH 326 (514)
T ss_pred cCCCCeEEEcccCce
Confidence 455566666665543
No 102
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=38.95 E-value=3.9e+02 Score=26.31 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=57.0
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCc--eEEEe-cCCCCcccc-----cccceeEECCeEEEEEecCCCcEEEEEE
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANE--VFQEV-QCPDIASSA-----YMETLDLYHDSLSLLFLNTTNNHYEIWV 277 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e--~~~~i-~~P~~~~~~-----~~~~L~~~~g~L~~~~~~~~~~~l~IW~ 277 (358)
++..+|.+|.....+ .|.++|..+. .|+.- ..|...... ....+...+|++.+...+ . .|..
T Consensus 65 Pvv~~g~vyv~s~~g-----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d---g--~l~A 134 (527)
T TIGR03075 65 PLVVDGVMYVTTSYS-----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD---A--RLVA 134 (527)
T ss_pred CEEECCEEEEECCCC-----cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC---C--EEEE
Confidence 788899999755433 5999998875 45532 233221110 011234446666553322 1 2444
Q ss_pred ECC----CeeeEEEEEccC---C-ccceEEEeeCCcEEEEecC----CCCEEEEEeCCCCcEE
Q 041631 278 LKE----RIWSKHLSVTLL---G-VEEPLGVWNNGGFFVQSDS----RPRRLLLYDPNTQEMR 328 (358)
Q Consensus 278 l~~----~~W~~~~~i~~~---~-~~~p~~~~~~g~i~~~~~~----~~~~l~~yd~~t~~~~ 328 (358)
|+. ..|..... +.. . ...|+.. ++.||+.... ..+.|+.||.+|++..
T Consensus 135 LDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 135 LDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 433 45654321 111 1 1345443 4566665421 1367999999988754
No 103
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.09 E-value=2.4e+02 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=34.0
Q ss_pred CcEEEEEEECC---CeeeEEEEEccCCccceEEEeeCCc-EEEEecCCCCEEEEEeCCCCcEE
Q 041631 270 NNHYEIWVLKE---RIWSKHLSVTLLGVEEPLGVWNNGG-FFVQSDSRPRRLLLYDPNTQEMR 328 (358)
Q Consensus 270 ~~~l~IW~l~~---~~W~~~~~i~~~~~~~p~~~~~~g~-i~~~~~~~~~~l~~yd~~t~~~~ 328 (358)
+.++..|-+++ +.|.-+.. +-...+++..||+ ++.... +.++..||.+++.-+
T Consensus 333 dr~i~~wdlDgn~~~~W~gvr~----~~v~dlait~Dgk~vl~v~~--d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 333 DRTIIMWDLDGNILGNWEGVRD----PKVHDLAITYDGKYVLLVTV--DKKIRLYNREARVDR 389 (519)
T ss_pred CCcEEEecCCcchhhccccccc----ceeEEEEEcCCCcEEEEEec--ccceeeechhhhhhh
Confidence 58899999998 88976653 1113455555654 333444 567778887776544
No 104
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=37.84 E-value=73 Score=29.77 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=47.4
Q ss_pred ceEEEEEECCCceEEEecC-CCCcccccccceeEECCeEEEEEecCCCcE--EEEEEECC---CeeeEEEEEccCCccce
Q 041631 224 HKIIISFDMANEVFQEVQC-PDIASSAYMETLDLYHDSLSLLFLNTTNNH--YEIWVLKE---RIWSKHLSVTLLGVEEP 297 (358)
Q Consensus 224 ~~~il~fD~~~e~~~~i~~-P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~--l~IW~l~~---~~W~~~~~i~~~~~~~p 297 (358)
.+.|+..|+.+.+...+-- ..-.... ..--.+..+.++|..+.... -+||.++. ..|-...+.....+...
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH~---~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGHV---QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEEE---EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred CceEEEEECCCCceeEEEecCccccCc---ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 5789999999998876522 2211100 00111566777775543333 37899987 33333222221123333
Q ss_pred EEEeeCCcEEEEec--C-CCCEEEEEeCCCCcEEEee
Q 041631 298 LGVWNNGGFFVQSD--S-RPRRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 298 ~~~~~~g~i~~~~~--~-~~~~l~~yd~~t~~~~~v~ 331 (358)
....++..|++... + +..-+..||++|.+-+.+.
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 33333444554432 1 2446899999998877653
No 105
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=35.11 E-value=5.4e+02 Score=26.80 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=21.9
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCc--eEEE
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANE--VFQE 239 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e--~~~~ 239 (358)
++.++|.+|..+.. ..|+++|..+. .|+.
T Consensus 190 Plvvgg~lYv~t~~-----~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 190 PLKVGDTLYLCTPH-----NKVIALDAATGKEKWKF 220 (764)
T ss_pred CEEECCEEEEECCC-----CeEEEEECCCCcEEEEE
Confidence 78999999976543 36999998864 5653
No 106
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=35.02 E-value=3.6e+02 Score=24.77 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=71.1
Q ss_pred eEEEEEeecCCCceEEEEEECCC--ceEEEecC-CCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECC--CeeeE
Q 041631 212 LCHWLWELEDSKHKIIISFDMAN--EVFQEVQC-PDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE--RIWSK 285 (358)
Q Consensus 212 ~lywl~~~~~~~~~~il~fD~~~--e~~~~i~~-P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~--~~W~~ 285 (358)
.||-....++ ...|.+|.+.. .+.+.+.- +..... . ..+... +|+..++... ....+.|.-+++ .-|..
T Consensus 53 ~LY~v~~~~~--~ggvaay~iD~~~G~Lt~ln~~~~~g~~-p-~yvsvd~~g~~vf~AnY-~~g~v~v~p~~~dG~l~~~ 127 (346)
T COG2706 53 HLYVVNEPGE--EGGVAAYRIDPDDGRLTFLNRQTLPGSP-P-CYVSVDEDGRFVFVANY-HSGSVSVYPLQADGSLQPV 127 (346)
T ss_pred EEEEEEecCC--cCcEEEEEEcCCCCeEEEeeccccCCCC-C-eEEEECCCCCEEEEEEc-cCceEEEEEcccCCccccc
Confidence 5787766643 24677777665 57776632 221111 0 145555 5655554443 257889998876 55665
Q ss_pred EEEEccC----------CccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEeee
Q 041631 286 HLSVTLL----------GVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 286 ~~~i~~~----------~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~~ 332 (358)
+..+... +..+...+..++++++..+-..++++.|+++.++++....
T Consensus 128 v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~ 184 (346)
T COG2706 128 VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP 184 (346)
T ss_pred eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc
Confidence 5554322 1244566667888888776337899999999999888643
No 107
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=34.29 E-value=1.4e+02 Score=28.85 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=38.6
Q ss_pred CcEEEEEEECC----CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 270 NNHYEIWVLKE----RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 270 ~~~l~IW~l~~----~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
...+.+|-... -.|.+.|.-+- +-+++....+.++..-+.+.++..||..+++...
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~----~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPC----RGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCc----CcceecCCccceEEEecccceEEEeecccccccc
Confidence 67899999888 68888887543 3355555454555443337789999988777655
No 108
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=32.99 E-value=2.6e+02 Score=24.45 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=30.0
Q ss_pred eEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCCC
Q 041631 206 CTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDI 245 (358)
Q Consensus 206 ~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~ 245 (358)
+..+-|+||-+..........-.+||+.+++-..+.+|-.
T Consensus 176 aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 176 AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeec
Confidence 6788899998877654445677999999988776665543
No 109
>PF13013 F-box-like_2: F-box-like domain
Probab=32.91 E-value=11 Score=28.19 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.7
Q ss_pred CchhHHHHHHhcCCccccceeeeccc
Q 041631 1 MYGDAMVEILSTLSVKNLLRFKCVCK 26 (358)
Q Consensus 1 LP~Dll~eIL~rLP~~sl~r~r~VcK 26 (358)
||+||+..|+..-....+......|+
T Consensus 25 LP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 25 LPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred ChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 79999999999999888766666665
No 110
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=32.71 E-value=1.2e+02 Score=28.17 Aligned_cols=46 Identities=17% Similarity=0.422 Sum_probs=29.4
Q ss_pred CCcEEEEEEECC----------CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCc
Q 041631 269 TNNHYEIWVLKE----------RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQE 326 (358)
Q Consensus 269 ~~~~l~IW~l~~----------~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~ 326 (358)
++.++++|-++- ..|++.-...| ||+.+-.... ++.+..||+++++
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-----------Dgk~iASG~~-dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-----------DGKKIASGSK-DGSIRLWDPKTGQ 190 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECC-----------Ccchhhcccc-CCeEEEecCCCCC
Confidence 467899998765 67887776665 4544443221 4566667766655
No 111
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=31.56 E-value=3.6e+02 Score=23.65 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=52.7
Q ss_pred eEEEEEECCCceEEEe-cCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccC---Cccc----
Q 041631 225 KIIISFDMANEVFQEV-QCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLL---GVEE---- 296 (358)
Q Consensus 225 ~~il~fD~~~e~~~~i-~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~---~~~~---- 296 (358)
..+...|+++.+++.. +.-.+.. . .++ .+.+-.-+.....+.+++||-++.+.= +..|.+. ...+
T Consensus 136 ~~~y~~dlE~G~i~r~~rGHtDYv--H--~vv-~R~~~~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYRGHTDYV--H--SVV-GRNANGQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred eEEEEEEecCCEEEEEEcCCccee--e--eee-ecccCcceeecCCCccEEEEeccccce--eEEeccccChhhcCcccC
Confidence 4788999999999753 3322111 0 111 211111222233467999999986221 2223322 1122
Q ss_pred --eEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEe
Q 041631 297 --PLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 297 --p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v 330 (358)
.-++.-+.+-+++.. +.++-.|++++-+-+.+
T Consensus 209 ~wigala~~edWlvCGg--Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 209 KWIGALAVNEDWLVCGG--GPKLSLWHLRSSESTCV 242 (325)
T ss_pred ceeEEEeccCceEEecC--CCceeEEeccCCCceEE
Confidence 123333556677766 67899999887766655
No 112
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=31.52 E-value=4.3e+02 Score=24.58 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=52.1
Q ss_pred eEEEEEECCCce-EEEecCCCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccCCccceEEEee
Q 041631 225 KIIISFDMANEV-FQEVQCPDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWN 302 (358)
Q Consensus 225 ~~il~fD~~~e~-~~~i~~P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~ 302 (358)
..|...|..+.+ ...|+....... .+... +|+..++... ...+.++-+...+ .+.+|..-.-..-+++..
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~----~~~~s~Dgr~~yv~~r--dg~vsviD~~~~~--~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHA----GLKFSPDGRYLYVANR--DGTVSVIDLATGK--VVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEE----EEE-TT-SSEEEEEET--TSEEEEEETTSSS--EEEEEE-SSEEEEEEE--
T ss_pred CEEEEEECCCCeEEEEEcCCCCcee----EEEecCCCCEEEEEcC--CCeEEEEECCccc--EEEEEecCCCcceEEEcC
Confidence 378889998754 466665433211 12222 5776555544 4577777776532 444454322233466667
Q ss_pred CCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 303 NGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 303 ~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
+|+.++......+.+..+|.+|.+..+
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred CCCEEEEEecCCCceeEecccccccee
Confidence 887777543226789999988766554
No 113
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=31.29 E-value=65 Score=21.33 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.4
Q ss_pred CEEEEEeCCCCcEEEee
Q 041631 315 RRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 315 ~~l~~yd~~t~~~~~v~ 331 (358)
-++|.||+++++++-+.
T Consensus 41 iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEE
Confidence 37999999999988763
No 114
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=31.02 E-value=5.2e+02 Score=25.35 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=45.3
Q ss_pred eEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCC--Cceec
Q 041631 113 ITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTN--SWRDL 190 (358)
Q Consensus 113 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~--~W~~~ 190 (358)
+.|.|.+|+||. +|....+.+++ ..++||..|. -++.++...-. -..+.-+ .|.+... .|++.
T Consensus 59 LHvYNTatnqWf-~PavrGDiPpg----cAA~GfvcdG----trilvFGGMvE---YGkYsNd---LYELQasRWeWkrl 123 (830)
T KOG4152|consen 59 LHVYNTATNQWF-APAVRGDIPPG----CAAFGFVCDG----TRILVFGGMVE---YGKYSND---LYELQASRWEWKRL 123 (830)
T ss_pred hhhhccccceee-cchhcCCCCCc----hhhcceEecC----ceEEEEccEee---eccccch---HHHhhhhhhhHhhc
Confidence 499999999997 55444333322 3455565553 24444321111 1245556 7777765 45655
Q ss_pred cc---ccCeeeeecCCcceEEeCCeEEEEE
Q 041631 191 VC---FKTIHYCIPHSHGCTYLDGLCHWLW 217 (358)
Q Consensus 191 ~~---~~~~~~~~~~~~~~v~~~G~lywl~ 217 (358)
.. ....|-|..-...-..++.+.|.+.
T Consensus 124 kp~~p~nG~pPCPRlGHSFsl~gnKcYlFG 153 (830)
T KOG4152|consen 124 KPKTPKNGPPPCPRLGHSFSLVGNKCYLFG 153 (830)
T ss_pred CCCCCCCCCCCCCccCceeEEeccEeEEec
Confidence 53 1112211111222455556788665
No 115
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=30.05 E-value=1.5e+02 Score=22.54 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCcEEEEec---CCCCEEEEEeCCCCcEEEeeec--Cce----eEEEEeeecceeCC
Q 041631 303 NGGFFVQSD---SRPRRLLLYDPNTQEMRDLGLR--SFW----FSVYNFKESLIPVK 350 (358)
Q Consensus 303 ~g~i~~~~~---~~~~~l~~yd~~t~~~~~v~~~--~~~----~~~~~y~~slv~~~ 350 (358)
+|.++.... .....++.||+++++++.+..+ ... .....|..+|.-+.
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~ 61 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVS 61 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEE
Confidence 555555433 1256899999999999999885 111 45667777665543
No 116
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.99 E-value=3.9e+02 Score=23.86 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=40.9
Q ss_pred cceeeEEEEEecCCCCceecccc-cCeeeeec-CCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecC
Q 041631 171 LHEFSLCTIYNLRTNSWRDLVCF-KTIHYCIP-HSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQC 242 (358)
Q Consensus 171 ~~~~e~~~vyss~~~~W~~~~~~-~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~ 242 (358)
...+. +|+..+.+|...... ...-..+. ....-+++.|.+-.-. .....+..||+.+.+|..+..
T Consensus 15 C~~lC---~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~----~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLC---LYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNG----TNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEE---EEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECC----CCceeEEEEecCCCeeeecCC
Confidence 45566 899999999998852 11111111 1122567777654211 134689999999999987654
No 117
>PF10382 DUF2439: Protein of unknown function (DUF2439); InterPro: IPR018838 This domain is found at the N-terminal of proteins implicated in telomere maintenance in Saccharomyces cerevisiae (Baker's yeast) [] and in meiotic chromosome segregation in Schizosaccharomyces pombe (Fission yeast) [].
Probab=29.17 E-value=2.1e+02 Score=20.17 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=25.3
Q ss_pred EeeCCcEEEEecCCCCEEEEEeCCCCcEEEeeecC
Q 041631 300 VWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLGLRS 334 (358)
Q Consensus 300 ~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~~~~ 334 (358)
.|.||.+-+... ..++.+||.+.+.+.......
T Consensus 18 ~W~DG~l~~~~~--~~kv~Lyde~~~~i~~~~~~~ 50 (83)
T PF10382_consen 18 KWHDGFLKYHSF--NKKVMLYDEDGNLIGSDFLKN 50 (83)
T ss_pred eeECCEEEEEeC--CCEEEEEcCCCCEEeEEEEec
Confidence 467898888876 789999999887777665543
No 118
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.11 E-value=3.9e+02 Score=23.32 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=94.5
Q ss_pred ecceEEEeecCCee-EEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEE
Q 041631 100 YDGIYCIFGLRDRI-TLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCT 178 (358)
Q Consensus 100 ~~GLl~l~~~~~~~-~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~ 178 (358)
.+|=-|+..+.++. -+|||..+....--... ++ -.-.++..+|. -|+... + ....+.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----G~--EVlD~~~s~Dn----skf~s~----G----gDk~v~--- 84 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----GH--EVLDAALSSDN----SKFASC----G----GDKAVQ--- 84 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCC-----Cc--eeeeccccccc----cccccC----C----CCceEE---
Confidence 45777777777665 99999988654332221 11 11122233332 222211 1 133344
Q ss_pred EEecCCC----Cceeccc-ccCeeeeecCCcceEEeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCCCcccccccc
Q 041631 179 IYNLRTN----SWRDLVC-FKTIHYCIPHSHGCTYLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMET 253 (358)
Q Consensus 179 vyss~~~----~W~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~ 253 (358)
+++..|| .||.... .....+ .. ..+|.+.|.+- ..+-++|-++..+..|+.=.+..+.- .
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~f--Ne-esSVv~SgsfD----------~s~r~wDCRS~s~ePiQildea~D~V--~ 149 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRF--NE-ESSVVASGSFD----------SSVRLWDCRSRSFEPIQILDEAKDGV--S 149 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEe--cC-cceEEEecccc----------ceeEEEEcccCCCCccchhhhhcCce--e
Confidence 8888875 5766553 111111 11 22566666532 36899999999998887755543321 1
Q ss_pred eeEECCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccCCccce---EEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEe
Q 041631 254 LDLYHDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEP---LGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 254 L~~~~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~p---~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v 330 (358)
-....+...+...- +.++...-+.. .++....+..| +.+.+++...+.... +..+-..|-+|+++-+.
T Consensus 150 Si~v~~heIvaGS~--DGtvRtydiR~------G~l~sDy~g~pit~vs~s~d~nc~La~~l-~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 150 SIDVAEHEIVAGSV--DGTVRTYDIRK------GTLSSDYFGHPITSVSFSKDGNCSLASSL-DSTLRLLDKETGKLLKS 220 (307)
T ss_pred EEEecccEEEeecc--CCcEEEEEeec------ceeehhhcCCcceeEEecCCCCEEEEeec-cceeeecccchhHHHHH
Confidence 12334444444432 23444333321 11111123444 445567766665442 56788888888876554
No 119
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=28.60 E-value=1.7e+02 Score=25.28 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=37.1
Q ss_pred eecceEEEeecCCeeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEE
Q 041631 99 PYDGIYCIFGLRDRITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIM 159 (358)
Q Consensus 99 s~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~ 159 (358)
..+|.|--.....++|..||.|+.-..+=..+.. .......++|-|+|..+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~----~al~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLT----VALSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeeccccc----ccccCceEEEecCcccCcEEEEc
Confidence 4567765555666789999999987666211111 01113478899999988877773
No 120
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=27.85 E-value=3.6e+02 Score=22.51 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=34.1
Q ss_pred EEEEECC--CeeeEEEEEccC-Cccce-EEEe-eCCcEEEEec------CCCCEEEEEeCCCCcEEEeeec
Q 041631 274 EIWVLKE--RIWSKHLSVTLL-GVEEP-LGVW-NNGGFFVQSD------SRPRRLLLYDPNTQEMRDLGLR 333 (358)
Q Consensus 274 ~IW~l~~--~~W~~~~~i~~~-~~~~p-~~~~-~~g~i~~~~~------~~~~~l~~yd~~t~~~~~v~~~ 333 (358)
.||..+. ++|. ...|+.. .-..| ...| +|..|++..+ .+++.||.||+.|++++.+...
T Consensus 89 kIYIkn~~~~~~~-~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 89 KIYIKNLNNNNWW-SLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred eEEEEecCCCceE-EEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 5666654 5552 2223333 11223 2234 3455555543 2578999999999999998653
No 121
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=27.73 E-value=4.7e+02 Score=23.77 Aligned_cols=85 Identities=11% Similarity=0.098 Sum_probs=50.8
Q ss_pred eEEe-CCeEEEEEeecCC---CceEEEEEECCCceEEEecCCCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECC
Q 041631 206 CTYL-DGLCHWLWELEDS---KHKIIISFDMANEVFQEVQCPDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKE 280 (358)
Q Consensus 206 ~v~~-~G~lywl~~~~~~---~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~ 280 (358)
++.+ +|.+.+....... ....++..|=..++|+.-..+..........++++ +|+|.++..........+..-.+
T Consensus 151 gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D 230 (351)
T cd00260 151 GIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRD 230 (351)
T ss_pred eEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcC
Confidence 5555 4887766554321 23455666666789986544432111122378888 99998887654234555555555
Q ss_pred --CeeeEEEEEc
Q 041631 281 --RIWSKHLSVT 290 (358)
Q Consensus 281 --~~W~~~~~i~ 290 (358)
..|+......
T Consensus 231 ~G~tWs~~~~~~ 242 (351)
T cd00260 231 MGTTWTEALGTL 242 (351)
T ss_pred CCcCcccCcCCc
Confidence 8999876543
No 122
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=26.77 E-value=1.3e+02 Score=29.06 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=64.0
Q ss_pred EecCccceecCCCCCCCCCC--CCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCCCceecccc
Q 041631 116 WNVATRDSRTLPNYGPTCPP--NTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTNSWRDLVCF 193 (358)
Q Consensus 116 ~NP~T~~~~~LP~~~~~~~~--~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~~W~~~~~~ 193 (358)
--|.|-+|.++|+....... ..........+.+++.++.--+..-. ++...-..+- +|+-+.+.|......
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW----dG~~~l~DFW---~Y~v~e~~W~~iN~~ 306 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW----DGTQDLADFW---AYSVKENQWTCINRD 306 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc----ccchhHHHHH---hhcCCcceeEEeecC
Confidence 34667778888765422111 01122445667777765532222111 1112233455 888889999988753
Q ss_pred cCeeeeecCCcceEEeC--CeEEEEEeec-----C--CCceEEEEEECCCceEEEecCCCC
Q 041631 194 KTIHYCIPHSHGCTYLD--GLCHWLWELE-----D--SKHKIIISFDMANEVFQEVQCPDI 245 (358)
Q Consensus 194 ~~~~~~~~~~~~~v~~~--G~lywl~~~~-----~--~~~~~il~fD~~~e~~~~i~~P~~ 245 (358)
...|....+.+ .|.-- -++|.|..-- . +...-+-.||..+..|..+..-..
T Consensus 307 t~~PG~RsCHR-MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~ 366 (723)
T KOG2437|consen 307 TEGPGARSCHR-MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA 366 (723)
T ss_pred CCCCcchhhhh-hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc
Confidence 22332111111 22211 2566554211 1 235678999999999998866444
No 123
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=26.24 E-value=91 Score=23.89 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=20.4
Q ss_pred EEEEecCCCCEEEEEeCCCCcEEEeeecCc
Q 041631 306 FFVQSDSRPRRLLLYDPNTQEMRDLGLRSF 335 (358)
Q Consensus 306 i~~~~~~~~~~l~~yd~~t~~~~~v~~~~~ 335 (358)
|+.... .-.++.||.++++|++.++.|.
T Consensus 22 Il~~a~--~v~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 22 ILDTAS--HVVVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEE--EEEEEEEETTTTEEEEEEEEEE
T ss_pred HHhhCC--eEEEEeecCCCCcEeecCcEee
Confidence 444433 3467888899999999998774
No 124
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=26.24 E-value=5.2e+02 Score=23.84 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=85.8
Q ss_pred EeeeCCCCCEEEEEEEEEecCCCcccceeeEEEEEecCCC--CceecccccC-eeeeecCCcc--eEEeCCe-EEEEEee
Q 041631 146 FGLDPNRNDYKLIMIYTYWDERTTELHEFSLCTIYNLRTN--SWRDLVCFKT-IHYCIPHSHG--CTYLDGL-CHWLWEL 219 (358)
Q Consensus 146 ~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~~vyss~~~--~W~~~~~~~~-~~~~~~~~~~--~v~~~G~-lywl~~~ 219 (358)
+...|..+.+-+.--+..+..+..+.-.+| +|+..|- .+...- ++. ..... ..+. .+..||. +|.....
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~---~~D~~TL~~~~EI~i-P~k~R~~~~-~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVE---IWDTQTLSPTGEIEI-PPKPRAQVV-PYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEE---EEETTTTEEEEEEEE-TTS-B--BS---GGGEEE-TTSSEEEEEEES
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEE---EEecCcCcccceEec-CCcchheec-ccccceEEccCCcEEEEEccC
Confidence 445666666666655555555555677788 9998885 332221 111 11111 1222 5666775 5555444
Q ss_pred cCCCceEEEEEECCCceE-EEecCCCCcccccccceeEECCeEEEEEecCCCcEEEEEEECC--CeeeEEEEE-ccC--C
Q 041631 220 EDSKHKIIISFDMANEVF-QEVQCPDIASSAYMETLDLYHDSLSLLFLNTTNNHYEIWVLKE--RIWSKHLSV-TLL--G 293 (358)
Q Consensus 220 ~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~L~~~~g~L~~~~~~~~~~~l~IW~l~~--~~W~~~~~i-~~~--~ 293 (358)
.. ..|-+.|+...++ .+|+.|.+..-.+. -+....++|.+ .++.-=.|++ +.=.+.-.+ .+. +
T Consensus 116 Pa---~SVtVVDl~~~kvv~ei~~PGC~~iyP~-----~~~~F~~lC~D---Gsl~~v~Ld~~Gk~~~~~t~~F~~~~dp 184 (342)
T PF06433_consen 116 PA---TSVTVVDLAAKKVVGEIDTPGCWLIYPS-----GNRGFSMLCGD---GSLLTVTLDADGKEAQKSTKVFDPDDDP 184 (342)
T ss_dssp SS---EEEEEEETTTTEEEEEEEGTSEEEEEEE-----ETTEEEEEETT---SCEEEEEETSTSSEEEEEEEESSTTTS-
T ss_pred CC---CeEEEEECCCCceeeeecCCCEEEEEec-----CCCceEEEecC---CceEEEEECCCCCEeEeeccccCCCCcc
Confidence 43 6899999999988 67899987543211 13344444432 3444445554 110122122 111 1
Q ss_pred -ccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 294 -VEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 294 -~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
+..|.....++.++|.+. .++++..|+...+.+-
T Consensus 185 ~f~~~~~~~~~~~~~F~Sy--~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 185 LFEHPAYSRDGGRLYFVSY--EGNVYSADLSGDSAKF 219 (342)
T ss_dssp B-S--EEETTTTEEEEEBT--TSEEEEEEETTSSEEE
T ss_pred cccccceECCCCeEEEEec--CCEEEEEeccCCcccc
Confidence 223333334567777776 6788888877766443
No 125
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=25.64 E-value=29 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=28.2
Q ss_pred CchhHHHHHHhcCC-ccccceeeeccccchhhcCChHh
Q 041631 1 MYGDAMVEILSTLS-VKNLLRFKCVCKSWYSLIENPIF 37 (358)
Q Consensus 1 LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~~~~F 37 (358)
||.+++.+||.||| -++|.-...|-..-..++++...
T Consensus 205 LP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~i 242 (332)
T KOG3926|consen 205 LPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRI 242 (332)
T ss_pred chHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHH
Confidence 79999999999999 67888887776555555554433
No 126
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=25.24 E-value=42 Score=30.60 Aligned_cols=34 Identities=15% Similarity=0.426 Sum_probs=27.5
Q ss_pred CchhHHHHHHhcCCc--------cccceeeeccccchhhcCC
Q 041631 1 MYGDAMVEILSTLSV--------KNLLRFKCVCKSWYSLIEN 34 (358)
Q Consensus 1 LP~Dll~eIL~rLP~--------~sl~r~r~VcK~W~~li~~ 34 (358)
||.+++.+|+.|... ++.+-+..|||.|+....+
T Consensus 48 l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 48 LPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred CCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 678899999998852 3688899999999986553
No 127
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=24.93 E-value=1e+02 Score=16.94 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=11.6
Q ss_pred CCEEEEEeCCCCcE
Q 041631 314 PRRLLLYDPNTQEM 327 (358)
Q Consensus 314 ~~~l~~yd~~t~~~ 327 (358)
.++.++||.+|++-
T Consensus 13 ~g~~YY~N~~t~~s 26 (31)
T PF00397_consen 13 SGRPYYYNHETGES 26 (31)
T ss_dssp TSEEEEEETTTTEE
T ss_pred CCCEEEEeCCCCCE
Confidence 47899999998864
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=23.97 E-value=5.6e+02 Score=23.41 Aligned_cols=122 Identities=3% Similarity=0.081 Sum_probs=65.5
Q ss_pred EEEEEECCCceEE-EecCCCCcccccccceeE-ECCeEEEEEecCCCcEEEEEEECC-------CeeeEEEEEc-cC-Cc
Q 041631 226 IIISFDMANEVFQ-EVQCPDIASSAYMETLDL-YHDSLSLLFLNTTNNHYEIWVLKE-------RIWSKHLSVT-LL-GV 294 (358)
Q Consensus 226 ~il~fD~~~e~~~-~i~~P~~~~~~~~~~L~~-~~g~L~~~~~~~~~~~l~IW~l~~-------~~W~~~~~i~-~~-~~ 294 (358)
.++.||.++-+.. ..+.-. .. .-+.+.. .+|+-.++... +..++....++ ++=+..+.+. +. ..
T Consensus 176 kllv~~a~t~e~vas~rits-~~--~IK~I~~s~~g~~liiNts--DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITS-VQ--AIKQIIVSRKGRFLIINTS--DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred eEEEEecchheeeeeeeech-he--eeeEEEEeccCcEEEEecC--CceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 6888888775331 111111 00 0113333 36665555533 56677766654 1111111111 00 00
Q ss_pred -cceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEee--ecCce---eEEEEeeecceeCCCC
Q 041631 295 -EEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLG--LRSFW---FSVYNFKESLIPVKGV 352 (358)
Q Consensus 295 -~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~--~~~~~---~~~~~y~~slv~~~~~ 352 (358)
..-.++..+|+.++......+.|+.|.-.++.+-+|- .+|.. -...++.+.++++.+|
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg 314 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASG 314 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCC
Confidence 2235556688888876645778999999999998873 23332 3356777888877655
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=23.73 E-value=7e+02 Score=25.20 Aligned_cols=112 Identities=11% Similarity=0.156 Sum_probs=64.8
Q ss_pred EEeCCeEEEEEeecCCCceEEEEEECCCceEEEe-cC-CCCcccccccceeEE--CCeEEEEEecCCCcEEEEEEECC--
Q 041631 207 TYLDGLCHWLWELEDSKHKIIISFDMANEVFQEV-QC-PDIASSAYMETLDLY--HDSLSLLFLNTTNNHYEIWVLKE-- 280 (358)
Q Consensus 207 v~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i-~~-P~~~~~~~~~~L~~~--~g~L~~~~~~~~~~~l~IW~l~~-- 280 (358)
...++..-++.... ...+..|++++.++..+ .. |..... .-..|+.. ++-++++.. ...+.+|-|+.
T Consensus 436 ftid~~k~~~~s~~---~~~le~~el~~ps~kel~~~~~~~~~~-~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 436 FTIDKNKLFLVSKN---IFSLEEFELETPSFKELKSIQSQAKCP-SISRLVVSSDGNYIAAIST---RGQIFVYNLETLE 508 (691)
T ss_pred EEecCceEEEEecc---cceeEEEEecCcchhhhhccccccCCC-cceeEEEcCCCCEEEEEec---cceEEEEEcccce
Confidence 35556554444422 24677888888877654 22 321111 11155555 455666553 47899999998
Q ss_pred CeeeE-EEEEccCCccceEEE-eeCCcEEEEecCCCCEEEEEeCCCCcEEEe
Q 041631 281 RIWSK-HLSVTLLGVEEPLGV-WNNGGFFVQSDSRPRRLLLYDPNTQEMRDL 330 (358)
Q Consensus 281 ~~W~~-~~~i~~~~~~~p~~~-~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v 330 (358)
.+|-+ ...+. +-..... +..+.+++.+. +++++-||++.+++.+.
T Consensus 509 ~~~l~~rln~~---vTa~~~~~~~~~~lvvats--~nQv~efdi~~~~l~~w 555 (691)
T KOG2048|consen 509 SHLLKVRLNID---VTAAAFSPFVRNRLVVATS--NNQVFEFDIEARNLTRW 555 (691)
T ss_pred eecchhccCcc---eeeeeccccccCcEEEEec--CCeEEEEecchhhhhhh
Confidence 55554 22221 1111111 24678999988 89999999977776664
No 130
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=23.52 E-value=4.4e+02 Score=26.02 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=57.1
Q ss_pred eecceEEEeecCC-eeEEEecCccceecCCCCCCCCCCCCCcccceEEEeeeCCCCCEEEEEEEEEecCCCcccceeeEE
Q 041631 99 PYDGIYCIFGLRD-RITLWNVATRDSRTLPNYGPTCPPNTKVYKTSVGFGLDPNRNDYKLIMIYTYWDERTTELHEFSLC 177 (358)
Q Consensus 99 s~~GLl~l~~~~~-~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~e~~ 177 (358)
..+|-+|+...++ ++.||||..++.+.+=... + ..-.+..-|-|-+++=.|+.... .-.+.
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg------H--taNIFsvKFvP~tnnriv~sgAg--------Dk~i~-- 120 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLHSISTG------H--TANIFSVKFVPYTNNRIVLSGAG--------DKLIK-- 120 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceeeeeecc------c--ccceeEEeeeccCCCeEEEeccC--------cceEE--
Confidence 4567777776554 5699999955433222111 1 12334455567777655543221 22344
Q ss_pred EEEecCCCCceecccccCeeee--ecCCc---c-eEEeCC-eEEEEEeecCCCceEEEEEECCC
Q 041631 178 TIYNLRTNSWRDLVCFKTIHYC--IPHSH---G-CTYLDG-LCHWLWELEDSKHKIIISFDMAN 234 (358)
Q Consensus 178 ~vyss~~~~W~~~~~~~~~~~~--~~~~~---~-~v~~~G-~lywl~~~~~~~~~~il~fD~~~ 234 (358)
+|++...+=+..+.....+.. ..... . ++.=+| ..+|-+..++ .|.-+|++.
T Consensus 121 -lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG----tirQyDiRE 179 (758)
T KOG1310|consen 121 -LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG----TIRQYDIRE 179 (758)
T ss_pred -EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc----ceeeecccC
Confidence 787654222211111111110 11111 1 334445 6889888765 688888776
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=22.07 E-value=1.4e+02 Score=28.83 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=42.1
Q ss_pred CCeEEEEEecCCCcEEEEEEECC-CeeeEEEEEccCCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEE
Q 041631 258 HDSLSLLFLNTTNNHYEIWVLKE-RIWSKHLSVTLLGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRD 329 (358)
Q Consensus 258 ~g~L~~~~~~~~~~~l~IW~l~~-~~W~~~~~i~~~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~ 329 (358)
+|+-.++... ..++.||-|.. .-=.|..--.--+...-+++..|.++.|.... ++.+.+||+..+++.+
T Consensus 476 dgrtLivGGe--astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs-dGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 476 DGRTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS-DGNIAVWDLHNQTLVR 545 (705)
T ss_pred CCceEEeccc--cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc-CCcEEEEEcccceeee
Confidence 6666555544 68999999986 21111111011133445666667777776543 6789999998877655
No 132
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=22.05 E-value=6.4e+02 Score=23.38 Aligned_cols=120 Identities=9% Similarity=-0.032 Sum_probs=57.2
Q ss_pred EeCCeEEEEEeecCCCceEEEEEECCCceEEEecCCCCcccccccceeEECCe-EEEEEecCCCcEEEEEEECCCeeeEE
Q 041631 208 YLDGLCHWLWELEDSKHKIIISFDMANEVFQEVQCPDIASSAYMETLDLYHDS-LSLLFLNTTNNHYEIWVLKERIWSKH 286 (358)
Q Consensus 208 ~~~G~lywl~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~L~~~~g~-L~~~~~~~~~~~l~IW~l~~~~W~~~ 286 (358)
..++.++++...+......|...|.....-+.+.-+....... . ..-+|+ |++.....+...+.+|-++.+.-.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p--~-~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 153 AFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSP--A-WSPDGQKLAYVSFESGKPEIYVQDLATGQREKV 229 (417)
T ss_pred CcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecc--c-CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe
Confidence 3445555555443223456778887665544443333211100 1 112444 44333332234566665554433322
Q ss_pred EEEccCCccceEEEeeCCc-EEEEecC-CCCEEEEEeCCCCcEEEeee
Q 041631 287 LSVTLLGVEEPLGVWNNGG-FFVQSDS-RPRRLLLYDPNTQEMRDLGL 332 (358)
Q Consensus 287 ~~i~~~~~~~p~~~~~~g~-i~~~~~~-~~~~l~~yd~~t~~~~~v~~ 332 (358)
..+.. ... -..+..+|+ |++.... ....++.+|+++++.+.+..
T Consensus 230 ~~~~~-~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 230 ASFPG-MNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred ecCCC-Ccc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC
Confidence 22211 112 233455664 5554431 13469999999998887743
No 133
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.31 E-value=5.6e+02 Score=23.81 Aligned_cols=59 Identities=8% Similarity=0.131 Sum_probs=35.3
Q ss_pred CcEEEEEEECCCeeeEEEEEcc-CCccceEEEeeCCcEEEEecCCCCEEEEEeCCCCcEEEee
Q 041631 270 NNHYEIWVLKERIWSKHLSVTL-LGVEEPLGVWNNGGFFVQSDSRPRRLLLYDPNTQEMRDLG 331 (358)
Q Consensus 270 ~~~l~IW~l~~~~W~~~~~i~~-~~~~~p~~~~~~g~i~~~~~~~~~~l~~yd~~t~~~~~v~ 331 (358)
+.+|.+|-+.-+ .-..++.. ..-.+-+++..+|+.++.... ++.|-+||+++++-.+.-
T Consensus 313 DktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-Dktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 313 DKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCAD-DKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred cceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEec-CCcEEEEEeccceeeecc
Confidence 578888877642 01111111 112234455567888877542 668999999998876653
No 134
>PF15408 PH_7: Pleckstrin homology domain
Probab=21.24 E-value=19 Score=25.46 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=18.3
Q ss_pred cccceeeeccccchhhcCChHhH
Q 041631 16 KNLLRFKCVCKSWYSLIENPIFI 38 (358)
Q Consensus 16 ~sl~r~r~VcK~W~~li~~~~F~ 38 (358)
+.++-.+-|||.|-.+..+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 34555667999999999999985
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=21.16 E-value=5.3e+02 Score=22.08 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=46.4
Q ss_pred EEEEEECCCceE-EEecCCCCcccccccceeEE-CCeEEEEEecCCCcEEEEEEECCCeeeEEEEEccCCccceEEEeeC
Q 041631 226 IIISFDMANEVF-QEVQCPDIASSAYMETLDLY-HDSLSLLFLNTTNNHYEIWVLKERIWSKHLSVTLLGVEEPLGVWNN 303 (358)
Q Consensus 226 ~il~fD~~~e~~-~~i~~P~~~~~~~~~~L~~~-~g~L~~~~~~~~~~~l~IW~l~~~~W~~~~~i~~~~~~~p~~~~~~ 303 (358)
.|..+|+.+.+. ..++.+... ..+... +|.+.++... ....+.+|-++. ......+.......-+.+..+
T Consensus 96 ~l~~~d~~~~~~~~~~~~~~~~-----~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPVGVEP-----EGMAVSPDGKIVVNTSE-TTNMAHFIDTKT--YEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred eEEEEECCCCeEEeEeeCCCCc-----ceEEECCCCCEEEEEec-CCCeEEEEeCCC--CeEEEEEEcCCCccEEEECCC
Confidence 688899987543 333322111 122222 6666655543 223344444433 222222221111122445567
Q ss_pred CcEEEEecCCCCEEEEEeCCCCcE
Q 041631 304 GGFFVQSDSRPRRLLLYDPNTQEM 327 (358)
Q Consensus 304 g~i~~~~~~~~~~l~~yd~~t~~~ 327 (358)
|..++.....++.+..||+++++.
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCccee
Confidence 766654432257899999998765
Done!