Your job contains 1 sequence.
>041633
MEEEEHEVYGGEIPDVEGDMDAHNTDVDMSAADDDAVKELDEMKKRLKEMEEEAAALREM
QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT
ILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFN
PYMGYRGRRPYVPPYFYSPYGYGYEGSEVQKANEVHALLLADCAPVEDGDICGSSIN
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041633
(237 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171780 - symbol:AT5G65260 species:3702 "Arabi... 662 5.2e-65 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 638 1.8e-62 1
UNIPROTKB|G4MUH3 - symbol:MGG_07252 "Polyadenylate-bindin... 348 9.8e-32 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 341 5.4e-31 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 324 3.4e-29 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 324 3.4e-29 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 324 3.4e-29 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 323 4.4e-29 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 323 4.4e-29 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 323 4.4e-29 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 323 4.4e-29 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 323 4.4e-29 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 323 4.4e-29 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 323 4.4e-29 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 323 4.4e-29 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 323 4.4e-29 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 319 1.2e-28 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 307 2.2e-27 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 300 1.2e-26 1
FB|FBgn0005648 - symbol:Pabp2 "Pabp2" species:7227 "Droso... 292 8.4e-26 1
UNIPROTKB|Q28ZX3 - symbol:Pabp2 "Polyadenylate-binding pr... 290 1.4e-25 1
CGD|CAL0002199 - symbol:orf19.7097 species:5476 "Candida ... 286 3.6e-25 1
UNIPROTKB|Q5AFH1 - symbol:SGN12 "Putative uncharacterized... 286 3.6e-25 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 283 7.6e-25 1
UNIPROTKB|F1NWW9 - symbol:PABPN1 "Uncharacterized protein... 282 9.7e-25 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 281 1.2e-24 1
UNIPROTKB|A6NDY0 - symbol:PABPN1L "Embryonic polyadenylat... 277 3.3e-24 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 269 2.3e-23 1
CGD|CAL0003946 - symbol:orf19.1389 species:5476 "Candida ... 264 7.8e-23 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 263 1.0e-22 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 263 1.0e-22 1
RGD|1562761 - symbol:Pabpn1l "poly(A)binding protein nucl... 263 1.0e-22 1
UNIPROTKB|G3V9K1 - symbol:Pabpn1l "Similar to embryonic p... 263 1.0e-22 1
MGI|MGI:2685954 - symbol:Pabpn1l "poly(A)binding protein ... 260 2.1e-22 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 257 4.3e-22 1
UNIPROTKB|I3LCE0 - symbol:LOC100620185 "Uncharacterized p... 251 1.9e-21 1
SGD|S000001440 - symbol:SGN1 "Cytoplasmic RNA-binding pro... 239 3.5e-20 1
WB|WBGene00017140 - symbol:EEED8.12 species:6239 "Caenorh... 221 2.8e-18 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 221 2.8e-18 1
WB|WBGene00017135 - symbol:EEED8.4 species:6239 "Caenorha... 218 5.8e-18 1
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 185 8.6e-14 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 185 9.9e-14 1
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 181 2.7e-13 1
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 179 4.3e-13 1
UNIPROTKB|H0YJH9 - symbol:PABPN1 "Polyadenylate-binding p... 169 9.1e-13 1
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 172 1.9e-12 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 172 2.5e-12 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 170 3.4e-12 1
UNIPROTKB|F1P368 - symbol:DAZL "Deleted in azoospermia-li... 164 6.1e-12 1
UNIPROTKB|Q804A9 - symbol:DAZL "Deleted in azoospermia-li... 164 6.1e-12 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 155 2.8e-11 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 153 4.5e-11 1
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 158 7.8e-11 1
TAIR|locus:2087685 - symbol:AT3G12640 species:3702 "Arabi... 156 2.8e-10 1
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 150 6.5e-10 1
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 150 7.2e-10 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 141 8.4e-10 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 141 8.4e-10 1
POMBASE|SPAC3G6.04 - symbol:rnp24 "RNA-binding protein Rn... 144 2.1e-09 1
ASPGD|ASPL0000005213 - symbol:AN6074 species:162425 "Emer... 138 5.5e-09 1
POMBASE|SPAC16E8.06c - symbol:nop12 "RNA-binding protein ... 141 6.2e-09 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 135 1.3e-08 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 129 1.6e-08 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 129 1.6e-08 1
UNIPROTKB|I3L8K8 - symbol:I3L8K8 "Uncharacterized protein... 129 1.6e-08 1
UNIPROTKB|A3DUJ0 - symbol:DAZL "Deleted in azoospermia-li... 134 1.6e-08 1
UNIPROTKB|J9NTC5 - symbol:DAZL "Uncharacterized protein" ... 134 1.6e-08 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 134 2.2e-08 1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 136 2.2e-08 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 137 2.3e-08 1
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 126 3.3e-08 1
RGD|1311646 - symbol:Sart3 "squamous cell carcinoma antig... 138 4.1e-08 1
UNIPROTKB|I3LPX5 - symbol:LOC100625706 "Uncharacterized p... 133 4.2e-08 1
ASPGD|ASPL0000069068 - symbol:AN7350 species:162425 "Emer... 134 4.4e-08 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 124 5.3e-08 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 124 5.3e-08 1
UNIPROTKB|E2QWQ0 - symbol:RBM7 "Uncharacterized protein" ... 132 7.6e-08 1
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 133 8.2e-08 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 122 8.7e-08 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 122 8.7e-08 1
UNIPROTKB|D4A0P8 - symbol:Dazl "Protein Dazl" species:101... 132 9.3e-08 1
MGI|MGI:1342328 - symbol:Dazl "deleted in azoospermia-lik... 132 1.1e-07 1
RGD|1591714 - symbol:Dazl "deleted in azoospermia-like" s... 132 1.1e-07 1
UNIPROTKB|D6RBQ9 - symbol:HNRNPD "Heterogeneous nuclear r... 120 1.4e-07 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 133 1.5e-07 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 99 1.6e-07 2
ASPGD|ASPL0000038712 - symbol:AN3427 species:162425 "Emer... 132 1.6e-07 1
UNIPROTKB|E7EV40 - symbol:DAZL "Deleted in azoospermia-li... 128 1.6e-07 1
UNIPROTKB|F5GY08 - symbol:RBM7 "RNA-binding protein 7" sp... 129 1.7e-07 1
UNIPROTKB|H0YHU8 - symbol:SART3 "Squamous cell carcinoma ... 119 1.8e-07 1
UNIPROTKB|F1N209 - symbol:RBM11 "Uncharacterized protein"... 129 2.7e-07 1
DICTYBASE|DDB_G0287335 - symbol:DDB_G0287335 "RNA-binding... 117 2.9e-07 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 130 3.4e-07 1
UNIPROTKB|Q9Y580 - symbol:RBM7 "RNA-binding protein 7" sp... 129 3.4e-07 1
UNIPROTKB|J3KPD3 - symbol:RBM7 "RNA-binding protein 7" sp... 129 3.5e-07 1
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37... 131 3.6e-07 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 116 3.8e-07 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 116 3.8e-07 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 116 3.8e-07 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 116 3.8e-07 1
WARNING: Descriptions of 371 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 132/185 (71%), Positives = 146/185 (78%)
Query: 8 VYGGEIPDV---EGDMDAHNTDVDMSXXXXXXVKXXXXXXXXXXXXXXXXXXXXXXQAKV 64
VYGGEIPDV +GDM+A N D+DM+ VK QAKV
Sbjct: 8 VYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAALREMQAKV 67
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
EKEMGA QDPA++AANQA KEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+RVTILTD
Sbjct: 68 EKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD 126
Query: 125 KFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMG 184
KFGQPKGFAYVEF+E++AVQEALQLNESELHGRQLKVL KRTNVPG+KQ+R RRFNPYMG
Sbjct: 127 KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMG 186
Query: 185 YRGRR 189
YR RR
Sbjct: 187 YRFRR 191
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 126/182 (69%), Positives = 137/182 (75%)
Query: 8 VYGGEIPDVEGDMDAHNTDVDMSXXXXXXVKXXXXXXXXXXXXXXXXXXXXXXQAKVEKE 67
VYGGEIP+V GD D + D+DMS V QAKVEKE
Sbjct: 8 VYGGEIPEV-GDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKE 66
Query: 68 MGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 127
MGA QDPA++AANQ KEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTIL DKFG
Sbjct: 67 MGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFG 126
Query: 128 QPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 187
QPKGFAYVEF+E++AVQEALQLNESELHGRQLKV PKRTNVPGMKQY P RFNP MGYR
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRF 186
Query: 188 RR 189
RR
Sbjct: 187 RR 188
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 76/137 (55%), Positives = 93/137 (67%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
AK+ +EM A+ D + + S+++ DSRS+FVGNVDY+ +PEE+Q HFQSCG++NRVTI
Sbjct: 46 AKL-REMQASLDSQSQELSTESRDDVDSRSIFVGNVDYSASPEEIQAHFQSCGSINRVTI 104
Query: 122 LTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRR-- 178
L DKF GQPKGFAYVEF E V +AL LNES GR +KV PKRTN PGM + R R
Sbjct: 105 LLDKFTGQPKGFAYVEFTEPSLVAQALVLNESVFKGRNIKVSPKRTNYPGMSRGRGRGRG 164
Query: 179 --------FNPYMGYRG 187
F P GYRG
Sbjct: 165 RGGFGRGGFPPRGGYRG 181
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 74/128 (57%), Positives = 90/128 (70%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
AK+ +EM A D + + + KE+ D+RS+FVGNVDY +PEE+Q HFQSCG++NRVTI
Sbjct: 42 AKL-REMQATLDQQSESLKE-DKEDIDARSIFVGNVDYGASPEEIQAHFQSCGSINRVTI 99
Query: 122 LTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFN 180
L DKF GQPKG+AYVEF E V +AL LNES GR LKV+PKRTN+PGM R R
Sbjct: 100 LLDKFTGQPKGYAYVEFAEPSLVAQALVLNESVFRGRNLKVVPKRTNLPGMSS-RGRGRG 158
Query: 181 PYMGY-RG 187
GY RG
Sbjct: 159 RGRGYGRG 166
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 131 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 190
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 191 RVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIST-TD 249
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 250 RGF-PRARYRAR 260
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 136 QNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 195
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 196 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 254
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 255 RGF-PRSRYRAR 265
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 136 QNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 195
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 196 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 254
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 255 RGF-PRARYRAR 265
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 109 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 168
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 169 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 227
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 228 RGF-PRARYRAR 238
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 199
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 200 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 258
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 259 RGF-PRARYRAR 269
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 199
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 200 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 258
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 259 RGF-PRARYRAR 269
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 12 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 71
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 72 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 130
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 131 RGF-PRARYRAR 141
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 12 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 71
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 72 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 130
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 131 RGF-PRARYRAR 141
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 199
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 200 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 258
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 259 RGF-PRARYRAR 269
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 140 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 199
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 200 RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TD 258
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 259 RGF-PRARYRAR 269
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/132 (52%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 130 QNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 189
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 190 RVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIST-TD 248
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 249 RGF-PRARYRAR 259
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 70/111 (63%), Positives = 78/111 (70%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDA 142
KE D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 143 VQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGR 188
V AL LN S LH R LKV PKRTNVPGM + R R R GYRGR
Sbjct: 109 VPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGR 159
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 68/132 (51%), Positives = 89/132 (67%)
Query: 61 QAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
Q +VEK+M + P N V + K EAD+RS++VGNVDY T EE++ HF CG+VN
Sbjct: 131 QNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVN 190
Query: 118 RVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
RVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+
Sbjct: 191 RVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIST-TD 249
Query: 177 RRFNPYMGYRGR 188
R F P YR R
Sbjct: 250 RGF-PRARYRAR 260
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 67/130 (51%), Positives = 86/130 (66%)
Query: 61 QAKVEKEMGAAQDPAN-VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRV 119
Q +VEK+M + PA V + K EAD RS++VGNVDY T EE++ HF CG+VNRV
Sbjct: 68 QNEVEKQMNLSPPPAGPVIMSIEEKIEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRV 127
Query: 120 TILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRR 178
TIL DKF G PKGFAY+EF + ++V+ A+ L+ES GRQ+KV KRTN PG+ R
Sbjct: 128 TILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKVGAKRTNRPGIST-TDRG 186
Query: 179 FNPYMGYRGR 188
F P +R R
Sbjct: 187 F-PRARFRSR 195
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 62/107 (57%), Positives = 76/107 (71%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDA 142
K EAD++SV+VGNVDY T EE++QHF CG+V+RVTI D+F G PKGFAYVEF E +
Sbjct: 72 KAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEG 131
Query: 143 VQEALQLNESELHGRQLKVLPKRTNVPGMKQY-RPRRFNPYMGYRGR 188
+Q AL + +S L GRQ+KV PKRTN PGM RP P+ G GR
Sbjct: 132 MQNALAMTDSLLRGRQIKVDPKRTNKPGMSTTNRP----PFRGRGGR 174
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 63/131 (48%), Positives = 86/131 (65%)
Query: 61 QAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR 118
Q++V+K+M G+ A V + K+E D+RSV+VGNVDY + EE++ HF CGT+NR
Sbjct: 65 QSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINR 124
Query: 119 VTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR 177
VTIL +K G PKGFAY+EF + V+ AL +NE+ GRQ+KV+ KRTN PG+
Sbjct: 125 VTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLST--TN 182
Query: 178 RFNPYMGYRGR 188
RF +RGR
Sbjct: 183 RF-ARGSFRGR 192
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 63/131 (48%), Positives = 86/131 (65%)
Query: 61 QAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR 118
Q++V+K+M G+ A V + K+E D+RSV+VGNVDY + EE++ HF CGT+NR
Sbjct: 65 QSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINR 124
Query: 119 VTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR 177
VTIL +K G PKGFAY+EF + V+ AL +NE+ GRQ+KV+ KRTN PG+
Sbjct: 125 VTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLST--TN 182
Query: 178 RFNPYMGYRGR 188
RF +RGR
Sbjct: 183 RF-ARGSFRGR 192
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDA 142
K + D+RS+++GNVDY TP E+QQHF S G VNRVTILT+KF GQPKGFAY+EF + DA
Sbjct: 57 KRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDA 116
Query: 143 VQEALQ-LNESELHGRQLKVLPKRTNVPGMKQYR--PRRFNP-YMGYRGR 188
V +A+ L+ S RQLKV KRTN+PG+ R P R + G RGR
Sbjct: 117 VNKAVATLDGSTFRERQLKVSAKRTNIPGISVKRGFPGRGRGNFRGGRGR 166
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDA 142
K + D+RS+++GNVDY TP E+QQHF S G VNRVTILT+KF GQPKGFAY+EF + DA
Sbjct: 57 KRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDA 116
Query: 143 VQEALQ-LNESELHGRQLKVLPKRTNVPGMKQYR--PRRFNP-YMGYRGR 188
V +A+ L+ S RQLKV KRTN+PG+ R P R + G RGR
Sbjct: 117 VNKAVATLDGSTFRERQLKVSAKRTNIPGISVKRGFPGRGRGNFRGGRGR 166
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 52/99 (52%), Positives = 75/99 (75%)
Query: 74 PANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGF 132
P ++A + K+E D RSV+VGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+
Sbjct: 79 PQPLSAEE--KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY 136
Query: 133 AYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
AY+EF E ++V A+ ++E+ GR +KVLPKRTN+PG+
Sbjct: 137 AYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 53/89 (59%), Positives = 69/89 (77%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDA 142
K EAD RS++VGNVDY T EE++ HF CG +NRVTIL DKF G PKG+AY+EF + +
Sbjct: 46 KVEADQRSIYVGNVDYGGTAEELESHFNICGRINRVTILCDKFSGHPKGYAYIEFEQKSS 105
Query: 143 VQEALQLNESELHGRQLKVLPKRTNVPGM 171
V+ A++L+ES GR +KVLPKRTN+PG+
Sbjct: 106 VKAAVELDESIFRGRVIKVLPKRTNMPGI 134
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 52/99 (52%), Positives = 75/99 (75%)
Query: 74 PANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGF 132
P ++A + K+E D RSV+VGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+
Sbjct: 79 PRPLSAEE--KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGY 136
Query: 133 AYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
AY+EF E ++V A+ ++E+ GR +KVLPKRTN+PG+
Sbjct: 137 AYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGI 175
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 63/134 (47%), Positives = 81/134 (60%)
Query: 61 QAKVEKEMGAAQ--DPANV----AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCG 114
QA+ E+ A Q P V + K EAD RSV+VGNVDY + EE++ HF CG
Sbjct: 112 QAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCG 171
Query: 115 TVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 173
V+RVTIL DKF G PKG+AY+EF +VQ A++L++S GR +KVLPKRTN PG+
Sbjct: 172 EVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISS 231
Query: 174 YRPRRFNPYMGYRG 187
+ G RG
Sbjct: 232 TDRGGLRGHPGSRG 245
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 57/108 (52%), Positives = 76/108 (70%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDA 142
+EE DSRSV+VGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEF+ ++
Sbjct: 95 QEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKES 154
Query: 143 VQEALQLNESELHGRQLKVLPKRTNVPG-MKQ-YRPRRFNPYMGYRGR 188
+ A+ LN+S + RQLK+ PKRTN+P M+Q P + G RGR
Sbjct: 155 IINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 55/114 (48%), Positives = 78/114 (68%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEI 140
A +EE D RSV+VGNVDY TPE++++ F G + RVTIL D+F G PKG+AY+EF +
Sbjct: 20 AKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQT 79
Query: 141 DAVQEAL-QLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGR 188
++VQ+A+ +L+ E GR+L+V KRTN+PG ++ R R R G+RGR
Sbjct: 80 ESVQKAIDELHGKEFRGRELRVTAKRTNLPGFRRGRGRGGFRARGRGRGGFRGR 133
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 49/89 (55%), Positives = 67/89 (75%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDA 142
K EAD RS++VGNVDY T +E++ +F CG ++RVTIL DKF G PKG+AY+EF +
Sbjct: 153 KAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATESS 212
Query: 143 VQEALQLNESELHGRQLKVLPKRTNVPGM 171
Q A++L++S GR +KVLPKRTN+PG+
Sbjct: 213 AQAAVELDKSIFRGRVIKVLPKRTNLPGI 241
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 58/125 (46%), Positives = 73/125 (58%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
EKE G D K EAD RSV+VGNVDY T E++ +F CG ++RVTIL D
Sbjct: 143 EKEAGFPSD------TPTEKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCD 196
Query: 125 KF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYM 183
KF G PKG+AY+EF + Q A++L+ S GR +KVLPKRTN PG+ +
Sbjct: 197 KFSGHPKGYAYIEFATESSAQAAVELDNSVFRGRVIKVLPKRTNFPGISSTDRGGLRGHP 256
Query: 184 GYRGR 188
RGR
Sbjct: 257 SARGR 261
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 53/93 (56%), Positives = 68/93 (73%)
Query: 82 ASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFL 138
A KE EAD RSV+VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF
Sbjct: 129 APKENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFA 188
Query: 139 EIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
+VQ A++L+ES GR +KVLPKRTN PG+
Sbjct: 189 SKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 53/93 (56%), Positives = 68/93 (73%)
Query: 82 ASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFL 138
A KE EAD RSV+VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF
Sbjct: 144 APKENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFA 203
Query: 139 EIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
+VQ A++L+ES GR +KVLPKRTN PG+
Sbjct: 204 SKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 236
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 53/95 (55%), Positives = 69/95 (72%)
Query: 80 NQASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVE 136
++ SKE EAD RSVFVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+E
Sbjct: 131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIE 190
Query: 137 FLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
F +V+ A+ L+ES GR +KVLPKRTN PG+
Sbjct: 191 FASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 60/143 (41%), Positives = 87/143 (60%)
Query: 61 QAKVEKEMGAAQDPANVAANQASKEEADS--RSVFVGNVDYACTPEEVQQHFQSCGTVNR 118
Q +VE++ + + A + + +E DS RS++VGNVDY T +E++ +F SCG VNR
Sbjct: 36 QYEVERQFPYSPE-AELFFDMTHEERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNR 94
Query: 119 VTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ---Y 174
VTI ++F G PKGFAY+EF + ++V+ A+ L+E+ GR +KV PKRTN+PG Y
Sbjct: 95 VTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVSPKRTNIPGFSTTDVY 154
Query: 175 -----------RPRRFNPYMGYR 186
R RFNP+ G R
Sbjct: 155 LRGGWSRGRGVRASRFNPFRGCR 177
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 56/125 (44%), Positives = 71/125 (56%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
EKE G D K EAD RSV+VGNVDY T E++ +F CG ++RVTIL D
Sbjct: 143 EKEAGFPSD------TPTEKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCD 196
Query: 125 KF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYM 183
KF G PKG+AY+EF + Q ++L+ S G +KVLPKRTN PG+ +
Sbjct: 197 KFSGHPKGYAYIEFATESSAQAPVELDNSVFRGPVIKVLPKRTNFPGISSTDRGGLRGHP 256
Query: 184 GYRGR 188
RGR
Sbjct: 257 SARGR 261
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEI 140
A + EADSRS+FVGN+ TPE+++ HF+ CG + R+T+L D+ G PKG+ Y+EF E
Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF-ES 114
Query: 141 DAVQE-ALQLNESELHGRQLKVLPKRTNVPGMKQY 174
A +E ALQLN EL G+++ V KRTN+PG ++
Sbjct: 115 PAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRH 149
>WB|WBGene00017140 [details] [associations]
symbol:EEED8.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15923 RefSeq:NP_495021.1 ProteinModelPortal:Q09301 SMR:Q09301
IntAct:Q09301 STRING:Q09301 EnsemblMetazoa:EEED8.12 GeneID:173922
KEGG:cel:CELE_EEED8.12 UCSC:EEED8.12 CTD:173922 WormBase:EEED8.12
InParanoid:Q09301 OMA:HESIFRD NextBio:881677 Uniprot:Q09301
Length = 197
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 47/112 (41%), Positives = 70/112 (62%)
Query: 61 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 120
Q K+ K + +A A V + ++ D++SVF+GNVD+ T EEV++HF+ CG + R T
Sbjct: 35 QNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTT 91
Query: 121 ILTDKFGQP-KGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
I DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM
Sbjct: 92 IPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 46/96 (47%), Positives = 64/96 (66%)
Query: 77 VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYV 135
+A +E+ D+RSV+VGNVD+ T E+++HF CG V RVTI DKF G K FA+V
Sbjct: 33 MAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFV 92
Query: 136 EFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
EF ++++VQ AL L+ + R++ V KRTN PGM
Sbjct: 93 EFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGM 128
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 45/112 (40%), Positives = 70/112 (62%)
Query: 61 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 120
Q K+ K + +A A V + ++ D++SVF+GNVD+ T EE+++HF+ CG + + T
Sbjct: 29 QNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTT 85
Query: 121 ILTDKFGQP-KGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
I DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM
Sbjct: 86 IPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 185 (70.2 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 49/120 (40%), Positives = 66/120 (55%)
Query: 66 KEMGAA-QDPANVAANQASKEEA-DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 123
K GA D + + AS+ + D RSVFVGN+ Y +++HF CG++ V I+
Sbjct: 239 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 298
Query: 124 DKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYR--PRRFN 180
DK G KGF YV F D+V AL+LN SEL GR+L+V+ + N KQ PR N
Sbjct: 299 DKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM-RSVNKEKFKQQNSNPRLKN 357
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 185 (70.2 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 49/120 (40%), Positives = 66/120 (55%)
Query: 66 KEMGAA-QDPANVAANQASKEEA-DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT 123
K GA D + + AS+ + D RSVFVGN+ Y +++HF CG++ V I+
Sbjct: 261 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 320
Query: 124 DKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYR--PRRFN 180
DK G KGF YV F D+V AL+LN SEL GR+L+V+ + N KQ PR N
Sbjct: 321 DKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM-RSVNKEKFKQQNSNPRLKN 379
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 181 (68.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 44/103 (42%), Positives = 60/103 (58%)
Query: 63 KVEKEMGAA-QDPANVAANQASKEEA-DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 120
K K GA D + + AS+ + D RSVFVGN+ Y V++HF CG++ V
Sbjct: 258 KALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVR 317
Query: 121 ILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 162
I+ D+ G +GF YV F DAV AL+LN SEL GR+L+V+
Sbjct: 318 IVRDRVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM 360
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 179 (68.1 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 49/121 (40%), Positives = 67/121 (55%)
Query: 62 AKVEKEMGAA-QDPANVAANQASKEEA-DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRV 119
AK + GA D + + AS+ + D RSVFVGN+ Y V++HF CG+V V
Sbjct: 253 AKALERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSVVAV 312
Query: 120 TILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP-------KRTNVPGM 171
I+ D G +GF YV F DAV AL+LN SEL GR+L+V+ K+ + PG+
Sbjct: 313 RIVRDPVTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMRSIHKEKLKQNSNPGL 372
Query: 172 K 172
K
Sbjct: 373 K 373
>UNIPROTKB|H0YJH9 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HGNC:HGNC:8565 Ensembl:ENST00000555295 Uniprot:H0YJH9
Length = 96
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 38/70 (54%), Positives = 48/70 (68%)
Query: 120 TILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRR 178
TIL DKF G PKGFAY+EF + ++V+ +L L+ES GRQ+KV+PKRTN PG+ R
Sbjct: 2 TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIST-TDRG 60
Query: 179 FNPYMGYRGR 188
F P YR R
Sbjct: 61 F-PRARYRAR 69
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 41/99 (41%), Positives = 60/99 (60%)
Query: 76 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAY 134
++A+ AS+ D RSVFVGN+ Y +++HF CG++ V I+ + G +GF Y
Sbjct: 280 DLASETASR---DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGY 336
Query: 135 VEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 173
V F DAV AL+LN SEL GR+L+V+ + N +KQ
Sbjct: 337 VLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 374
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 172 (65.6 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 41/99 (41%), Positives = 60/99 (60%)
Query: 76 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAY 134
++A+ AS+ D RSVFVGN+ Y +++HF CG++ V I+ + G +GF Y
Sbjct: 274 DLASETASR---DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGY 330
Query: 135 VEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 173
V F DAV AL+LN SEL GR+L+V+ + N +KQ
Sbjct: 331 VLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 368
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 170 (64.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 76 NVAANQASKEEA--DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGF 132
++ + ASK + RSVF+GN+ Y + V++HF CG V V I+ D+ G KGF
Sbjct: 236 HIRVDSASKNSLHDNKRSVFLGNLAYDISDSAVREHFADCGDVVAVRIVRDRQSGMGKGF 295
Query: 133 AYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNP 181
YV F DAV AL+LN S+L GR+L+V KR G R P
Sbjct: 296 GYVLFENTDAVHLALKLNNSDLMGRKLRV--KRCVEKGRAPQRSTTSRP 342
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 164 (62.8 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLN 150
+VFVG +D E++ +F+ GTV V I+TD+ G KG+ +V FL+ VQ+ ++ +
Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95
Query: 151 ESELHGRQLKVLP---KRTNVPGMKQYRPRRFNP 181
+ +HG++LK+ P K+ N+ Q RP FNP
Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPRPLAFNP 129
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 164 (62.8 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLN 150
+VFVG +D E++ +F+ GTV V I+TD+ G KG+ +V FL+ VQ+ ++ +
Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95
Query: 151 ESELHGRQLKVLP---KRTNVPGMKQYRPRRFNP 181
+ +HG++LK+ P K+ N+ Q RP FNP
Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPRPLAFNP 129
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-Q 148
SV+VGN + T EE+ F S G +N V I+ D+ G+P+GFA++EF E + Q A+ Q
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 149 LNESELHGRQLKV 161
+N +E +GR L+V
Sbjct: 66 MNGAEFNGRPLRV 78
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-Q 148
SV+VGNV Y T EE+ +F + G VN V I+ D+ G+P+GFA+VEF E Q A+ Q
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 149 LNESELHGRQLKV 161
LN +GR L+V
Sbjct: 67 LNGVAFNGRNLRV 79
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 158 (60.7 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 41/111 (36%), Positives = 63/111 (56%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFL 138
+Q SK + RS+FVGN+ Y + +Q HFQ CG + V ++ D+ G KGF YV F
Sbjct: 243 SQHSKHD-HKRSIFVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFE 301
Query: 139 EIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGRR 189
D+V AL+LN S L R+++V KR+ +K+ + ++ P G+R
Sbjct: 302 SPDSVMLALKLNGSTLQQRKIRV--KRS----VKKEKEKKTPPGRKAEGQR 346
>TAIR|locus:2087685 [details] [associations]
symbol:AT3G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
IPI:IPI01019808 RefSeq:NP_566430.3 UniGene:At.42987
UniGene:At.63536 ProteinModelPortal:F4J9U9 SMR:F4J9U9 PRIDE:F4J9U9
EnsemblPlants:AT3G12640.1 GeneID:820444 KEGG:ath:AT3G12640
OMA:LVEYVIV Uniprot:F4J9U9
Length = 638
Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 36/107 (33%), Positives = 57/107 (53%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
A V++E + + E+A SR++FV NV + T + + +HF G V + I
Sbjct: 452 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 511
Query: 122 LTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167
+TD GQP G AY+EF +A + AL L+ + R LK++ K +N
Sbjct: 512 VTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKIV-KGSN 557
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 150 (57.9 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 40/114 (35%), Positives = 64/114 (56%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
A + ++ G A+D Q S ++A R++FVG++ Y+ T E++++ F SCG ++ +
Sbjct: 239 ASMAEKFGQAKD------QQPSDKDA-KRTIFVGSLKYSATEEQLREIFSSCGEIDYIRC 291
Query: 122 LTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYR 175
L D KG AYV F + DAV AL+LN++ L R + V + G KQ R
Sbjct: 292 LQDGDKGCKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKLGAKQVR 345
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 150 (57.9 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
RS+FVGN+D+ E + +HF+ CG + V I+ D K KGFAYV+F ++ +V +AL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 149 LNESELHGRQLKVLPKRTNVPGMKQYRPR 177
LNE + ++ + + T P K + R
Sbjct: 339 LNEKPMKSQKQE--DENTKKPTKKARKLR 365
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-Q 148
SV+VGN + T +++ +F G V+ V I+ D+ G+P+GFA+VEF E A Q A+ Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 149 LNESELHGRQLKV 161
N + +GR L+V
Sbjct: 65 FNGVDFNGRALRV 77
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-Q 148
SV+VGN + T +++ +F G V+ V I+ D+ G+P+GFA+VEF E A Q A+ Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 149 LNESELHGRQLKV 161
N + +GR L+V
Sbjct: 65 FNGVDFNGRALRV 77
>POMBASE|SPAC3G6.04 [details] [associations]
symbol:rnp24 "RNA-binding protein Rnp24" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC3G6.04 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 HOGENOM:HOG000193653
OrthoDB:EOG47DDRF EMBL:U24430 EMBL:AB027862 PIR:T38723
RefSeq:NP_594970.1 ProteinModelPortal:Q09100 STRING:Q09100
EnsemblFungi:SPAC3G6.04.1 GeneID:2542965 KEGG:spo:SPAC3G6.04
NextBio:20804000 Uniprot:Q09100
Length = 369
Score = 144 (55.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 32/89 (35%), Positives = 54/89 (60%)
Query: 69 GAAQDPANV----AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT- 123
G PAN A+ Q+SK+E S +FVGN+D+ T ++++HF G + RV ++T
Sbjct: 204 GRPSKPANTLSKTASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTF 262
Query: 124 DKFGQPKGFAYVEFLEIDAVQEALQLNES 152
+ G+ KGF +V+F +ID +A++L +
Sbjct: 263 EDTGKCKGFGFVDFPDIDTCMKAMELGHN 291
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 138 (53.6 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 26/74 (35%), Positives = 49/74 (66%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
+SVF+GN+ Y T E+V+ + GTV + ++ + + G+PKG+ + +F + DA A++
Sbjct: 8 KSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVR 67
Query: 149 -LNESELHGRQLKV 161
LN+ E+ GR+++V
Sbjct: 68 NLNDYEIMGRKIRV 81
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 141 (54.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
R VFVGN+ + E + ++F CG+++ V I+ D K KGFAY++F + V +AL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 149 LNESEL-HGRQLKVLPKRTNVP 169
LNE ++ GR L+++ ++ P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL 147
SR VFVGN+ Y + E++ F G V ++ D+ G+PKGF + E+ + D+ A+
Sbjct: 7 SRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAV 66
Query: 148 Q-LNESELHGRQLKV 161
+ LN++E+ GR+L+V
Sbjct: 67 RNLNDTEIMGRKLRV 81
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
+++EEAD R+VFVGN++ E + + F G + +VTI D+ G PK F +V F +
Sbjct: 3 SAQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPE 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N L+GR + V
Sbjct: 62 SVSYAIALLNGIRLYGRPINV 82
>UNIPROTKB|A3DUJ0 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like transcript variant
1" species:9913 "Bos taurus" [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:DAAA02003725 EMBL:DQ408764 EMBL:DQ408765
EMBL:EF501823 IPI:IPI00706010 RefSeq:NP_001075194.1
UniGene:Bt.63695 STRING:A3DUJ0 Ensembl:ENSBTAT00000048665
GeneID:530116 KEGG:bta:530116 InParanoid:A3DUJ0 NextBio:20875183
Uniprot:A3DUJ0
Length = 295
Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE- 98
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFNP 181
++ HG++LK+ P ++ N+ Q RP FNP
Sbjct: 99 SQINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNP 133
>UNIPROTKB|J9NTC5 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 CTD:1618 OMA:YVIPPAY EMBL:AAEX03013583
RefSeq:XP_534251.3 Ensembl:ENSCAFT00000046462 GeneID:477055
KEGG:cfa:477055 Uniprot:J9NTC5
Length = 295
Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE- 98
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFNP 181
++ HG++LK+ P ++ N+ Q RP FNP
Sbjct: 99 SQINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNP 133
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 134 (52.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQ 144
+ RSVFVGN+ Y + + ++ F G V + ++ D+ G+PKG+ ++EF +I +
Sbjct: 14 DRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAE 73
Query: 145 EALQ-LNESELHGRQLKV 161
A++ LN EL GR L+V
Sbjct: 74 VAIRNLNGYELSGRILRV 91
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 136 (52.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 79 ANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEF 137
A + S + RSVFVGN+ Y T E++++ F G V + ++ D+ G+PKGF + E+
Sbjct: 5 AQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEY 64
Query: 138 LEIDAVQEALQ-LNESELHGRQLKVLPKRTNVPGMKQYR----PRRFNPY 182
+ + A++ LN E+ GR L+V T M+ + P+ NPY
Sbjct: 65 KDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPY 114
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 137 (53.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 66 KEMGAAQDPANVAANQASK-EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
K+ A ++PA AA++ SK EE S ++FVGN+ + T E + Q F+ G ++ I+T+
Sbjct: 254 KKRKAEEEPA--AASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTE 310
Query: 125 K-FGQPKGFAYVEFLEI-DAVQEALQLNESELHGRQLKVLPKRTNVPGMK 172
+ G+ +GF YVEF DA + + E E+ GR++ L T P K
Sbjct: 311 RDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKIN-LDYATGRPANK 359
Score = 129 (50.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 66 KEMGAAQDPA-NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
K+ G ++ A N A + + +S ++FVGN+ ++ + V + F G V + + TD
Sbjct: 359 KDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTD 418
Query: 125 -KFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV---LPKRTNVPG 170
+ G+PKGF YV++ +D ++A +L +E+ GR +++ P+ N G
Sbjct: 419 MESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPRANNGGG 469
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQE 145
EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F +V
Sbjct: 4 EAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPY 62
Query: 146 ALQL-NESELHGRQLKV 161
A+ L N +L+GR +K+
Sbjct: 63 AMNLLNGIKLYGRPIKI 79
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 138 (53.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQH--FQSCGTVNRVTIL 122
EK +D VA + +SK DS +VFV N+ Y+ EV+ F++CG V ++ +
Sbjct: 681 EKAASLKRDMPKVA-HDSSK---DSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPI 736
Query: 123 TDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP--KRTNVPGMKQYR 175
G +G+ YVEF E + Q+AL L+ + GR + V P ++ P K +R
Sbjct: 737 FSNRGDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSPCVDKSKNPDFKMFR 791
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 27/92 (29%), Positives = 51/92 (55%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +F+ + ++CT EE++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 797 EKHKLFISGLPFSCTKEELEGICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 856
Query: 147 LQLNESELHGRQLKVL---PKRTNVPGMKQYR 175
L+++ + +KV P + VP + R
Sbjct: 857 LKMDGMTIKENVIKVAISNPPQRKVPEKPEVR 888
>UNIPROTKB|I3LPX5 [details] [associations]
symbol:LOC100625706 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0045836 "positive regulation of
meiosis" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YVIPPAY
EMBL:FP312724 Ensembl:ENSSSCT00000022390 Uniprot:I3LPX5
Length = 298
Score = 133 (51.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
++FVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 41 TIFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE- 98
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFNP 181
++ HG++LK+ P ++ N+ Q RP FNP
Sbjct: 99 SQINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNP 133
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 134 (52.2 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 94 VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQEALQLNES 152
+GN+ + T ++ F CG N V I+ DK + PKGF YVEF +D +++AL L+ +
Sbjct: 86 IGNLSFDATSGDISDLFADCGVTN-VRIVEDKLTKAPKGFGYVEFETVDGLKKALDLSGA 144
Query: 153 ELHGRQLKV 161
L GR ++V
Sbjct: 145 TLQGRSIRV 153
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 75 ANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFA 133
++ ++N + +E D R+++VGN+ Y V++ F G+V+ V ++ DK G+ +GF
Sbjct: 57 SSTSSNTIASDE-DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFG 115
Query: 134 YVEFLEIDAVQEALQLNESELHGRQLKV 161
+VE D + LN++E R LKV
Sbjct: 116 FVEMASDDLDKAISALNDTEFQQRTLKV 143
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 75 ANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFA 133
++ ++N + +E D R+++VGN+ Y V++ F G+V+ V ++ DK G+ +GF
Sbjct: 57 SSTSSNTIASDE-DVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFG 115
Query: 134 YVEFLEIDAVQEALQLNESELHGRQLKV 161
+VE D + LN++E R LKV
Sbjct: 116 FVEMASDDLDKAISALNDTEFQQRTLKV 143
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 132 (51.5 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EEAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAEEAD-RTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 133 (51.9 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
++ E+++ N + + ++ +FVG + T EE +Q+F+ G V V I
Sbjct: 82 SREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAI 141
Query: 122 LTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKV---LPKRTNVPG 170
+ D+ +P+GF +V F DAV L +L G+Q++V LPK N PG
Sbjct: 142 MYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDAN-PG 193
Score = 107 (42.7 bits), Expect = 0.00099, P = 0.00099
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQ 144
++D +FVG + + +++++HF + G V++ ++ DK G+P+GF +V F + +
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 145 EALQLNESELHGRQLKV 161
LQ S + R++ V
Sbjct: 62 RVLQEKHS-IDTREVDV 77
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDA 142
K ++VG++ Y T +E+Q F G + ++ D+ G+ KGFA++ + DA
Sbjct: 12 KMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 143 VQEAL-QLNESELHGRQLKVLPKRTN 167
QEA+ + N +L GR+++V R N
Sbjct: 72 AQEAVSKANGIDLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDA 142
K ++VG++ Y T +E+Q F G + ++ D+ G+ KGFA++ + DA
Sbjct: 12 KMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 143 VQEAL-QLNESELHGRQLKVLPKRTN 167
QEA+ + N +L GR+++V R N
Sbjct: 72 AQEAVSKANGIDLQGRKIRVNIAREN 97
>UNIPROTKB|D4A0P8 [details] [associations]
symbol:Dazl "Protein Dazl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063480 CTD:1618 EMBL:CH473987
IPI:IPI00870381 RefSeq:NP_001102884.1 UniGene:Rn.136288
Ensembl:ENSRNOT00000066517 GeneID:680486 KEGG:rno:680486
NextBio:718813 Uniprot:D4A0P8
Length = 281
Score = 132 (51.5 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE- 98
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFNP 181
++ HG++LK+ P ++ N+ Q RP FNP
Sbjct: 99 SQINFHGKKLKLGPAIRKQNLCTYHVQPRPLIFNP 133
>MGI|MGI:1342328 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=ISO;IDA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0044464 "cell part" evidence=IDA] [GO:0045836 "positive
regulation of meiosis" evidence=IMP] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO;IDA]
[GO:0048477 "oogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1342328 GO:GO:0007275 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:X95724 EMBL:U38690 EMBL:U46694 EMBL:AK014854
EMBL:AK033183 IPI:IPI00262067 RefSeq:NP_034151.3 UniGene:Mm.280641
PDB:2XS2 PDB:2XS5 PDB:2XS7 PDB:2XSF PDBsum:2XS2 PDBsum:2XS5
PDBsum:2XS7 PDBsum:2XSF ProteinModelPortal:Q64368 SMR:Q64368
IntAct:Q64368 MINT:MINT-133503 STRING:Q64368 PhosphoSite:Q64368
PaxDb:Q64368 PRIDE:Q64368 Ensembl:ENSMUST00000010736 GeneID:13164
KEGG:mmu:13164 UCSC:uc008cyv.2 InParanoid:Q64368
EvolutionaryTrace:Q64368 NextBio:283242 Bgee:Q64368 CleanEx:MM_DAZL
Genevestigator:Q64368 GermOnline:ENSMUSG00000010592 Uniprot:Q64368
Length = 298
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE- 98
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFNP 181
++ HG++LK+ P ++ N+ Q RP FNP
Sbjct: 99 SQINFHGKKLKLGPAIRKQNLCTYHVQPRPLIFNP 133
>RGD|1591714 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IEA;ISO] [GO:0044464 "cell part" evidence=ISO] [GO:0045836
"positive regulation of meiosis" evidence=IEA;ISO] [GO:0045948
"positive regulation of translational initiation" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008494 GO:GO:0003730 GO:GO:0007281
GO:GO:0005844 GO:GO:0045836 GO:GO:0045948 OrthoDB:EOG4T783S
EMBL:CH473987 UniGene:Rn.136288 IPI:IPI00765442
Ensembl:ENSRNOT00000039512 UCSC:RGD:1591714 Uniprot:D4A3C6
Length = 298
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE- 98
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFNP 181
++ HG++LK+ P ++ N+ Q RP FNP
Sbjct: 99 SQINFHGKKLKLGPAIRKQNLCTYHVQPRPLIFNP 133
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 67 EMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF 126
E G+A+ A ASK E D +F+G + + T ++++ +F G V T+ D
Sbjct: 57 EGGSAESEG--AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 114
Query: 127 -GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
G+ +GF +V F E ++V + + E +L+G+ + PKR
Sbjct: 115 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID--PKR 152
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 133 (51.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/98 (35%), Positives = 52/98 (53%)
Query: 79 ANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEF 137
+++ S+EE D R+VFV + T E+ F+ G V I+ DK G+ KG AYVEF
Sbjct: 229 SSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
Query: 138 LEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYR 175
D+VQ A+ L+ L G L V+ + T ++ R
Sbjct: 289 CHEDSVQAAIALSGKRLLG--LPVIVQLTEAEKNRKAR 324
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 99 (39.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFLEIDAVQEALQ- 148
S+ V N+ Y +P+ +++ F+ G V V I D++ + +GFA+V F + ++A+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 149 LNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 187
++ + L GR+L+V R P + RR P Y G
Sbjct: 75 MDGAVLDGRELRVQMARYGRPP-DSHHSRRGPPPRRYGG 112
Score = 35 (17.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 9 YGGEIPDVEG 18
YG PDVEG
Sbjct: 3 YGRPPPDVEG 12
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 71 AQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT-DKFGQP 129
+QD N A + + S+ +FVGN+ + T E +++HF CGTV V + T G+
Sbjct: 163 SQDDGNNAPTSSGRPP--SKRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKC 220
Query: 130 KGFAYVEFLEIDAVQEA 146
KG+A+VEF +++A + A
Sbjct: 221 KGYAWVEFEDLEAAKTA 237
>UNIPROTKB|E7EV40 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010139
HGNC:HGNC:2685 IPI:IPI00927411 ProteinModelPortal:E7EV40 SMR:E7EV40
Ensembl:ENST00000454457 ArrayExpress:E7EV40 Bgee:E7EV40
Uniprot:E7EV40
Length = 204
Score = 128 (50.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 79 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVD-VQKIVE- 136
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFN 180
++ HG++LK+ P ++ N+ Q RP FN
Sbjct: 137 SQINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFN 170
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 129 (50.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +F+ + ++CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 38 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 97
Query: 147 LQLNESELHGRQLKVL---PKRTNVPGMKQYRPRRFNPYM 183
++++ + +KV P + VP + R P +
Sbjct: 98 MKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPML 137
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDA 142
++EEAD R+VFVGN++ E + + F G + +VTI D+ G+PK F +V F ++
Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62
Query: 143 VQEALQL-NESELHGRQLKV 161
V A+ L N L+GR + V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQEAL 147
+ +FV + ++ E ++QHF G++N ++ DK + +GF +V F + D+VQ+A+
Sbjct: 2 NNKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAM 61
Query: 148 QLNESELHGRQLKV 161
+ E+E+ GR+L V
Sbjct: 62 EA-ENEMGGRKLVV 74
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 130 (50.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 61 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 120
+ + E + G + QAS EE ++VGN+ Y T E+ Q F GTV V
Sbjct: 90 EVEEEGDEGEEEVEEEKQTTQASGEEG---RLYVGNLPYTITSSELSQIFGEAGTVVDVQ 146
Query: 121 ILTDKF-GQPKGFAYVEFLEIDAVQEALQL-NESELHGRQLKV 161
I+ DK + +GF +V I+ +EA+Q+ N S++ GR +KV
Sbjct: 147 IVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 129 (50.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 129 (50.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 131 (51.2 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/125 (28%), Positives = 68/125 (54%)
Query: 64 VEKEMGAAQDPANVAANQASKEEADS-RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 122
VEK AA+D N D +++FV ++Y + ++++ F+S G + RV ++
Sbjct: 114 VEK---AAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLV 170
Query: 123 TDKF-GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR-TNVPGMKQYRPRRF 179
TD+ +PKG+A++E++ ++ A Q + ++ GR++ V +R VP +RPRR
Sbjct: 171 TDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPN---WRPRRL 227
Query: 180 NPYMG 184
+G
Sbjct: 228 GGGLG 232
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEAL 147
++ ++VG++ Y T +++++ F GTV V I+TD + G+ KG YV L + +EA+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 148 Q-LNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYR-GRR 189
+ L+ + L R + V R + PRR P G R G++
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRP-APRRGKPGPGGRPGKK 104
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 81 QASKEE--ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEF 137
QA E+ + +++VGN+ Y EV+ F G VN V ++ D K G+ KGF +VE
Sbjct: 53 QADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEM 112
Query: 138 LEIDAVQEALQLNESELHGRQLKVLPKRT 166
E A + ++LN+ R LKV +T
Sbjct: 113 SEAGAQKAMVKLNDFNFQERTLKVREAKT 141
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEAL 147
++ ++VG++ Y T +++++ F GTV V I+TD + G+ KG YV L + +EA+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 148 Q-LNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYR-GRR 189
+ L+ + L R + V R + PRR P G R G++
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRP-APRRGKPGPGGRPGKK 104
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 81 QASKEE--ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEF 137
QA E+ + +++VGN+ Y EV+ F G VN V ++ D K G+ KGF +VE
Sbjct: 53 QADDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEM 112
Query: 138 LEIDAVQEALQLNESELHGRQLKVLPKRT 166
E A + ++LN+ R LKV +T
Sbjct: 113 SEAGAQKAMVKLNDFNFQERTLKVREAKT 141
>UNIPROTKB|P57052 [details] [associations]
symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
Length = 281
Score = 129 (50.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDA 142
++EEAD R+VFVGN++ E + + F G + +VTI D+ G+PK F +V F ++
Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62
Query: 143 VQEALQL-NESELHGRQLKV 161
V A+ L N L+GR + V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>FB|FBgn0035063 [details] [associations]
symbol:Eap "Exu-associated protein" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P52298
KO:K14789 ChiTaRS:RPL22 FlyBase:FBgn0035063 EMBL:BT030793
RefSeq:NP_523855.1 UniGene:Dm.30940 SMR:Q9W108 IntAct:Q9W108
MINT:MINT-1546135 EnsemblMetazoa:FBtr0072374 GeneID:37964
KEGG:dme:Dmel_CG3594 UCSC:CG3594-RA CTD:37964 InParanoid:Q9W108
OMA:IRIPKKR GenomeRNAi:37964 NextBio:806275 Uniprot:Q9W108
Length = 250
Score = 128 (50.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNE 151
++V N+++ T ++++ HF + GTV + I + G GFA+VE ++ + Q A QL+
Sbjct: 116 LYVTNLNFETTKDDLELHFSAAGTVKSIRIPKKRRG---GFAFVEMADLSSFQNAFQLHN 172
Query: 152 SELHGRQLKV 161
+EL GR +KV
Sbjct: 173 TELQGRNIKV 182
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL 147
S +FVG + + ++Q F S G V T++ D+ G+ +GF +V F D+ A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 148 -QLNESELHGRQLKV--LPKRTNVP 169
+++ EL+GRQ++V +R++ P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 127 (49.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDA 142
++EEAD R+VFVGN++ E + + F G + +VT+ D+ G+PK F +V F ++
Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPES 62
Query: 143 VQEALQL-NESELHGRQLKV 161
V A+ L N L+GR + V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 127 (49.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDA 142
++EEAD R+VFVGN++ E + + F G + +VT+ D+ G+PK F +V F ++
Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPES 62
Query: 143 VQEALQL-NESELHGRQLKV 161
V A+ L N L+GR + V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 130 (50.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 76 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAY 134
N + N S ++ +FVG + A T +E + +F++ G V+ I+ D+ Q P+GF +
Sbjct: 96 NASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGF 155
Query: 135 VEFLEIDAVQEALQLNESELHGRQLKV---LPKRTNVPGM 171
V F D+V L +L+G+Q++V LPK N PG+
Sbjct: 156 VSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDAN-PGI 194
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 129 (50.5 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEI 140
ASK E D+ +FVG + + + ++++ +F G V TI D G+ +GF ++ F E
Sbjct: 37 ASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKES 96
Query: 141 DAVQEALQLNESELHGRQLKVLPKR 165
D+V LQ E L GRQ+ PKR
Sbjct: 97 DSVDRVLQQKEHRLDGRQID--PKR 119
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 129 (50.5 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 30/102 (29%), Positives = 55/102 (53%)
Query: 67 EMGAAQDPANVAANQ--ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
+ GAA + NQ AS + D R +FVG + + T +E++ HF G + + + TD
Sbjct: 31 DAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTD 90
Query: 125 -KFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
+ G+ +GFA++ F +A+ + +E ++ + KV PK+
Sbjct: 91 PQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSK--KVDPKK 130
>UNIPROTKB|Q92904 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0007281 "germ cell development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 EMBL:CH471055 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0003730
GO:GO:0007281 GO:GO:0005844 GO:GO:0045836 eggNOG:NOG260394
GO:GO:0045948 OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573
HOGENOM:HOG000246400 EMBL:U65918 EMBL:U66726 EMBL:U66078
EMBL:U77476 EMBL:U77467 EMBL:U77468 EMBL:U77469 EMBL:U77470
EMBL:U77471 EMBL:U77472 EMBL:U77473 EMBL:U77474 EMBL:U77475
EMBL:AK303026 EMBL:BX648638 EMBL:AC010139 EMBL:BC027595
IPI:IPI00871660 RefSeq:NP_001177740.1 RefSeq:NP_001342.2
UniGene:Hs.131179 ProteinModelPortal:Q92904 SMR:Q92904
IntAct:Q92904 STRING:Q92904 PhosphoSite:Q92904 DMDM:27805453
PRIDE:Q92904 DNASU:1618 Ensembl:ENST00000250863
Ensembl:ENST00000399444 GeneID:1618 KEGG:hsa:1618 UCSC:uc003cbb.3
GeneCards:GC03M016603 HGNC:HGNC:2685 HPA:HPA019593 HPA:HPA019777
MIM:601486 neXtProt:NX_Q92904 PharmGKB:PA27155 OMA:YVIPPAY
GenomeRNAi:1618 NextBio:6646 ArrayExpress:Q92904 Bgee:Q92904
CleanEx:HS_DAZL Genevestigator:Q92904 GermOnline:ENSG00000092345
Uniprot:Q92904
Length = 295
Score = 128 (50.1 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVD-VQKIVE- 98
Query: 150 NESELHGRQLKVLP--KRTNVPGMK-QYRPRRFN 180
++ HG++LK+ P ++ N+ Q RP FN
Sbjct: 99 SQINFHGKKLKLGPAIRKQNLCAYHVQPRPLVFN 132
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 127 (49.8 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEI-DAVQEALQ 148
S+ V N+ C PEE+++ F+ G V V I D + GQP+GFA+VEF++ DA +
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 149 LNESELHGRQLKVL 162
+N GR++ V+
Sbjct: 108 MNRRSFAGREITVV 121
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 132 (51.5 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 37/116 (31%), Positives = 60/116 (51%)
Query: 66 KEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACT-PE-EVQQHFQSCGTVNRVT-IL 122
K A +P + ++ D VFV N+ + PE +++ FQ CGT+ +V +
Sbjct: 665 KNQQGAPEPQRQPHDMPKEQRKDENCVFVSNLTFNMEDPEGKLRTLFQGCGTIQQVRPVF 724
Query: 123 TDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP---KRTNVPGMKQYR 175
T K G +G+ YV+F + AV EAL+++ E+ GR + V P K N P K ++
Sbjct: 725 TAK-GTFRGYCYVQFEDRLAVPEALKMDRQEVDGRPMYVSPCVDKNKN-PDFKVFK 778
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDA 142
K + +F+ + Y+ T E ++ + GT+ + I+T++ G+ KG AYVEF E A
Sbjct: 780 KTSMEKHKIFISGLPYSATKETLEDLCKEHGTIRAIRIVTNRSGKSKGLAYVEFEDEAQA 839
Query: 143 VQEALQLNESELHGRQLKVLPKRTNVPG--MK-QYRPRRF 179
Q L+++ + L L V +N PG MK + P RF
Sbjct: 840 SQAVLKMDGTMLENFTLSVAI--SNPPGRRMKDEAAPSRF 877
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 130 (50.8 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 71 AQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQP 129
AQ A +Q S E +D+ VFVGN+ + T +++ F CG + + + TD + G+
Sbjct: 350 AQQRAGNFGDQLS-EPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRL 406
Query: 130 KGFAYVEFLEIDAVQEALQLNESELHGRQLKV 161
KGF YV F +ID+ ++ +++N + GR ++
Sbjct: 407 KGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRL 438
>UNIPROTKB|J9PA68 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:54033
OMA:YRFGSSR GeneTree:ENSGT00690000102191 EMBL:AAEX03016434
RefSeq:XP_535558.1 ProteinModelPortal:J9PA68
Ensembl:ENSCAFT00000043040 GeneID:478383 KEGG:cfa:478383
Uniprot:J9PA68
Length = 238
Score = 126 (49.4 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAV 143
+EEAD R+VFVGN++ E + + F G + +VTI D+ G+PK F +V F ++V
Sbjct: 5 QEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKTFGFVCFKHPESV 63
Query: 144 QEALQL-NESELHGRQLKV 161
A+ L N L+GR + V
Sbjct: 64 SYAIALLNGIRLYGRPINV 82
>UNIPROTKB|F1PL96 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:AAEX03013583
Ensembl:ENSCAFT00000009460 Uniprot:F1PL96
Length = 413
Score = 129 (50.5 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G+V V I+TD+ G KG+ +V F ++D VQ+ ++
Sbjct: 42 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE- 99
Query: 150 NESELHGRQLKVLP--KRTNVPGMKQY----RPRRFNP 181
++ HG++LK+ P ++ N+ Y RP FNP
Sbjct: 100 SQINFHGKKLKLGPAIRKQNLCEKGAYHVQPRPLVFNP 137
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQE 145
+D +FVG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 146 ALQ-LNESELHGRQLKV-LPKRTNV 168
A+ +N + GRQ++V P R +V
Sbjct: 63 AMMAMNGKSVDGRQIRVDQPLRPSV 87
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFLEIDAVQEAL 147
S ++FV + ++ T E + Q F G V +V ++ DK +PKGFAYV F + ++AL
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 148 -QLNESELHGR 157
+LN + GR
Sbjct: 80 LELNAQLVDGR 90
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/90 (24%), Positives = 48/90 (53%)
Query: 77 VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYV 135
++ +++ KE R +F+G + + T E ++ HF+ GT+ ++ D + +GF +V
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 136 EFLEIDAVQEALQLNESELHGRQLKVLPKR 165
+ ++ V A+ ++ GR ++ PKR
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVE--PKR 88
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 130 (50.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 38/115 (33%), Positives = 60/115 (52%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQH--FQSCGTVNRVTIL 122
EK +D VA + +SK DS +VFV N+ Y+ EV+ F+ CG V ++ +
Sbjct: 683 EKAASLKRDMPKVA-HDSSK---DSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPI 738
Query: 123 TDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP--KRTNVPGMKQYR 175
G +G+ YVEF E + Q+AL+L+ + GR + V P ++ P K +R
Sbjct: 739 FSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSPCVDKSKNPDFKVFR 793
Score = 119 (46.9 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +F+ + ++CT EE++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 799 EKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAV 858
Query: 147 LQLNESELHGRQLKVL---PKRTNVPGMKQYR 175
++++ + +KV P + VP + R
Sbjct: 859 MKMDGMTIRENVIKVAISNPPQRKVPEKPEVR 890
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 123 (48.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|J9NU83 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 EMBL:AAEX03002684
Ensembl:ENSCAFT00000043962 Uniprot:J9NU83
Length = 344
Score = 126 (49.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 63 KVEKEMGAA-QDPANVAANQASKEEA-DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 120
K K GA D + + AS+ + D RSVFVGN+ Y V++HF CG++ V
Sbjct: 255 KALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVR 314
Query: 121 ILTDKF-GQPKGFAYVEFLEIDA 142
I+ D+ G +GF YV F E+ +
Sbjct: 315 IVRDRVTGVGRGFGYVLFEEVSS 337
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 125 (49.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/87 (29%), Positives = 52/87 (59%)
Query: 76 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI-LTDKFGQPKGFAY 134
N A ++ S E + ++ N+ + V++ F CG+++RV++ + + G+ KGFA+
Sbjct: 147 NGANSKPSDGEGEPTTIVCRNIAFTVDETLVKEFFSKCGSISRVSLPVYEDSGRLKGFAF 206
Query: 135 VEFLEIDAVQEALQLNESELHGRQLKV 161
V F DAV++A+ L ++ GR+++V
Sbjct: 207 VSFDSEDAVEKAIALTGTKFEGREIQV 233
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 109 (43.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFLEIDAVQEAL-QL 149
+F+G + + T + + + F CG V I+ D+ + KGF +V F D Q+AL +
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 150 NESELHGRQLKV 161
N +L+GR + V
Sbjct: 96 NGQQLNGRTIFV 107
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 123 (48.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 40 (19.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLISGNPQ 206
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 127 (49.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 71 AQDPANVAANQASKEEADSRS-VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQ 128
A++ A + EE+D S +FVGN+ + + + F+ CGTV ++TD+ G+
Sbjct: 219 AEEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGR 278
Query: 129 PKGFAYVEFLEIDAVQEALQLNESE-LHGRQLKV 161
KGF YV+F + ++A + + GR++KV
Sbjct: 279 SKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKV 312
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 129 (50.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 78 AANQASKEE------ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPK 130
A N S++E ++++ +F+ N+ Y+C ++++ F G + +V + DK PK
Sbjct: 305 AENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPK 364
Query: 131 GFAYVEFLEID-AVQEALQLNESELHGRQLKVLPKR 165
GFAY++F + D AV+ L+L+ GR L VLP +
Sbjct: 365 GFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 123 (48.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 94 (38.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFLEIDAVQEALQ- 148
S+ V N+ Y +P+ +++ F+ G V V I D++ + +GFA+V F + ++A+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 149 LNESELHGRQLKVLPKRTNVPGMKQYRPRRFNP 181
++ + L GR+L+V R P + RR P
Sbjct: 75 MDGAVLDGRELRVQMARYGRPP-DSHHSRRGPP 106
Score = 35 (17.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 9 YGGEIPDVEG 18
YG PDVEG
Sbjct: 3 YGRPPPDVEG 12
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 123 (48.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|O57437 [details] [associations]
symbol:dazl-a "Deleted in azoospermia-like-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0008354 "germ cell migration" evidence=IMP] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0032019
"mitochondrial cloud" evidence=IDA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283
GO:GO:0003723 GO:GO:0008494 GO:GO:0007281 GO:GO:0045948
GO:GO:0045495 GO:GO:0008354 EMBL:AF017778 RefSeq:NP_001081772.1
UniGene:Xl.311 HSSP:Q15427 ProteinModelPortal:O57437 GeneID:398041
KEGG:xla:398041 CTD:1618 Xenbase:XB-GENE-6078612 HOVERGEN:HBG000573
GO:GO:0032019 Uniprot:O57437
Length = 286
Score = 124 (48.7 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 35/116 (30%), Positives = 56/116 (48%)
Query: 65 EKEMGAAQDPANVAANQA---SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
E+ A A NQ + E +VFVG +D E++ F G V V I
Sbjct: 5 EESSNYAATAEEEAVNQGFVLPEGEIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKI 64
Query: 122 LTDKFGQPKGFAYVEFL-EIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+TD+ G KG+ ++ F E+D VQ+ ++ ++ HG++LK+ P + Q RP
Sbjct: 65 ITDRTGVSKGYGFISFSDEVD-VQKIVK-SQISFHGKKLKLGPAIRKICTYVQPRP 118
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 123 (48.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 123 (48.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 108 (43.1 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQE 145
+D +FVG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 146 ALQ-LNESELHGRQLKV 161
A+ +N + GRQ++V
Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 123 (48.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 123 (48.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 123 (48.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 123 (48.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 123 (48.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 123 (48.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 127 (49.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE 139
++ K A +++V NV+ A T EE+++HF CGT+ ++ D+ G+ KGF +V F
Sbjct: 294 HEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353
Query: 140 IDAVQEALQLNESEL-HGRQLKV 161
+ +A++ ++ HG+ L V
Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYV 376
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 129 (50.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 38/117 (32%), Positives = 61/117 (52%)
Query: 65 EKEMGAA--QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQH--FQSCGTVNRVT 120
+KE AA +D V + +SK DS +VFV N+ Y+ EV+ F++CG V +
Sbjct: 800 QKERAAALKRDMPKVP-HDSSK---DSITVFVSNLPYSMDEPEVKLRPLFEACGEVTEIR 855
Query: 121 ILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP--KRTNVPGMKQYR 175
+ G +G+ YVEF E + +AL+L+ + GR + V P ++ P K +R
Sbjct: 856 PIFSNRGDFRGYCYVEFKEEKSALQALELDRKTVEGRPMFVSPCVDKSKHPDFKVFR 912
Score = 123 (48.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +FV + ++CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 918 EKHKLFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQAV 977
Query: 147 LQLNESELHGRQLKVL---PKRTNVP 169
L+++ + +KV P + VP
Sbjct: 978 LKMDGMTIKENVIKVAISNPPQRKVP 1003
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 124 (48.7 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/104 (25%), Positives = 62/104 (59%)
Query: 76 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 135
N A N + E+ R++FVG ++Y + ++++ F++ G + ++T++ D+ G+P+G+A++
Sbjct: 91 NPAENPRASEDP-YRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFI 149
Query: 136 EFLEIDAVQEALQLNES-ELHGRQLKVLPKRTNVPGMKQYRPRR 178
E+ + + A + + ++ G++L V +R K + PRR
Sbjct: 150 EYSDKAEMHTAYKKADGIKVDGKRLVVDYERGRT--QKTWLPRR 191
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 107 (42.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 77 VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYV 135
++ +++ KE R +F+G + + T E ++ HF+ GT+ ++ D + +GF +V
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 136 EFLEIDAVQEALQLNESELHGR 157
+ ++ V A+ ++ GR
Sbjct: 61 TYATVEEVDAAMNARPHKVDGR 82
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 125 (49.1 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 34/114 (29%), Positives = 56/114 (49%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
+K G + N + A +E+ R+V+V ++D T E++ F SCG V I D
Sbjct: 148 KKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD 207
Query: 125 KFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNV-PGMKQYRPR 177
+ FA++EF + + AL L+ + L +KVLP +T + P + PR
Sbjct: 208 PNSVLR-FAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPR 260
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 123 (48.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Score = 39 (18.8 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 159 LKVLPKRTNVPGMKQYRPR 177
LK+L ++TN+P + P+
Sbjct: 188 LKILHRQTNIPTLIAGNPQ 206
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 122 (48.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 28/107 (26%), Positives = 56/107 (52%)
Query: 73 DPANVAANQASKEEADSRS--VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-P 129
D N+ Q +S+S +FVG + + C E++++F+ G V V ++ D Q P
Sbjct: 121 DGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRP 180
Query: 130 KGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+GF ++ F + +V +A+ ++ ++ G++++V KR K P
Sbjct: 181 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV--KRAEPRDSKSQAP 225
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 69 GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-G 127
G + P++ + + +A R +FVG +D++ T E ++ +F G V I+ DK
Sbjct: 34 GTSGAPSHSSVSARKAAQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN 93
Query: 128 QPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
Q +GF +V+F + + V L L GR + PK+
Sbjct: 94 QSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID--PKQ 129
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 125 (49.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 20 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 79
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 80 NLNGREFSGRALRV 93
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 123 (48.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 31/101 (30%), Positives = 56/101 (55%)
Query: 67 EM-GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 125
EM G A++ A + ASK + D +F+G + + + +++ ++ G V TI TD
Sbjct: 6 EMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDP 65
Query: 126 F-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
G+ +GF +V F + +V++ L+L E +L G+ + PKR
Sbjct: 66 VTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLID--PKR 104
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 123 (48.4 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 67 EMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF 126
E G+A+ A ASK E D +F+G + + T ++++ +F G V T+ D
Sbjct: 24 EGGSAESEG--AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 81
Query: 127 -GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
G+ +GF +V F E ++V + + E +L+G+ + PKR MK P
Sbjct: 82 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID--PKRAKA--MKTKEP 128
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 123 (48.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 30/110 (27%), Positives = 56/110 (50%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
EKE A ++ + + ++ R +FV N+ ++ + ++ + F CGTVN V I+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 125 KFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV-LPKRTNVPGMK 172
K G+ +GFA+V + Q A+ + + ++ GR + V +R P K
Sbjct: 130 KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPK 179
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 127 (49.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 29/93 (31%), Positives = 50/93 (53%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEID 141
S + D+ +FV N+ Y T EE+ +HF + G ++ V ++ DK + +G AY+ +L +
Sbjct: 287 SDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPE 346
Query: 142 AVQEALQ-LNESELHGRQLKVLPKRTNVPGMKQ 173
A++ L+ S GR L +LP + KQ
Sbjct: 347 CAARAMEELDNSSFQGRLLHILPAKHRETSDKQ 379
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 125 (49.1 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 78 AANQASKEEA-DS--RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFA 133
AA A+++ A D RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+
Sbjct: 9 AAAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYG 68
Query: 134 YVEFLEIDAVQEALQ-LNESELHGRQLKV 161
+ E+ + + A++ LN E GR L+V
Sbjct: 69 FCEYQDQETALSAMRNLNGREFSGRALRV 97
>UNIPROTKB|Q4V7Y4 [details] [associations]
symbol:dazl-b "Deleted in azoospermia-like-B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0007281 "germ cell
development" evidence=ISS] [GO:0008354 "germ cell migration"
evidence=ISS] [GO:0008494 "translation activator activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=ISS]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0003723
GO:GO:0008494 GO:GO:0007281 GO:GO:0045948 GO:GO:0008354
UniGene:Xl.311 HSSP:Q15427 Xenbase:XB-GENE-6078612
HOVERGEN:HBG000573 GO:GO:0032019 EMBL:BC071023 EMBL:BC097658
ProteinModelPortal:Q4V7Y4 Uniprot:Q4V7Y4
Length = 286
Score = 122 (48.0 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQL 149
+VFVG +D E++ F G V V I+TD+ G KG+ ++ F E+D +Q+ ++
Sbjct: 34 TVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDRTGVSKGYGFISFSDEVD-IQKIVK- 91
Query: 150 NESELHGRQLKVLPKRTNVPGMKQYRP 176
++ HG++LK+ P + Q RP
Sbjct: 92 SQISFHGKKLKLGPAIRKICTYVQPRP 118
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 122 (48.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 64 VEKEMGAAQDP-ANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 122
+ E +D A+VA + AD + +FVGN+ + ++ Q F+S G V V ++
Sbjct: 65 ITSEFEVEEDGFADVAPPKEQSFSADLK-LFVGNLPFNVDSAQLAQLFESAGNVEMVEVI 123
Query: 123 TDKF-GQPKGFAYVEFLEIDAVQEALQ-LNESELHGRQLKV 161
DK G+ +GF +V + V+ A Q N EL GR L+V
Sbjct: 124 YDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 123 (48.4 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 31/101 (30%), Positives = 56/101 (55%)
Query: 67 EM-GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 125
EM G A++ A + ASK + D +F+G + + + +++ ++ G V TI TD
Sbjct: 42 EMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDP 101
Query: 126 F-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
G+ +GF +V F + +V++ L+L E +L G+ + PKR
Sbjct: 102 VTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLID--PKR 140
>TAIR|locus:2061077 [details] [associations]
symbol:AT2G24350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10 EMBL:BT033027
EMBL:AK228942 IPI:IPI00535352 RefSeq:NP_180012.2 UniGene:At.13805
UniGene:At.39171 ProteinModelPortal:Q0WPW8 SMR:Q0WPW8 PRIDE:Q0WPW8
EnsemblPlants:AT2G24350.1 GeneID:816971 KEGG:ath:AT2G24350
TAIR:At2g24350 eggNOG:NOG242858 HOGENOM:HOG000120691
InParanoid:Q0WPW8 OMA:TEPHIAY PhylomeDB:Q0WPW8
ProtClustDB:CLSN2690892 Genevestigator:Q0WPW8 Uniprot:Q0WPW8
Length = 537
Score = 125 (49.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 61 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQS-CGTVNRV 119
Q K +K P + +Q ++ ++SR + V NV YA E + F S CG V V
Sbjct: 416 QLKKQKVEERKPSPQS-GESQYQEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNV 474
Query: 120 TILTDKFGQ-PKGFAYVEFLEIDAVQEALQLNESELHGRQLKV 161
++TD + PKG A+V F ++V +A+ L+ + + R +KV
Sbjct: 475 IVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYSRPIKV 517
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 125 (49.1 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 123 (48.4 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A D A+ ASK E D+ +FVG + + + ++++ +F G V TI D G+
Sbjct: 75 AGDDGADGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGR 134
Query: 129 PKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
+GF ++ F E V + L E L GRQ+ PK+
Sbjct: 135 SRGFGFILFKEPSGVDKVLAQKEHRLDGRQID--PKK 169
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 126 (49.4 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQP-KGFAYVEFLEIDAV 143
EE+D R+VFV + +++ F GTV V ++TDK + KG YVEF + + V
Sbjct: 261 EESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMV 320
Query: 144 QEALQLNESELHGRQLKV 161
+A+ L+ S L G+Q+ V
Sbjct: 321 DKAIALSGSVLDGQQILV 338
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 119 (46.9 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 80 NQASKEEADSRS--VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVE 136
NQ +S+S +FVG + + C E++++F+ G V V ++ D Q P+GF ++
Sbjct: 79 NQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFIT 138
Query: 137 FLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
F + +V +A+ ++ ++ G++++V KR K P
Sbjct: 139 FEDEQSVDQAVNMHFHDIMGKKVEV--KRAEPRDSKSQAP 176
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 125 (49.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 125 (49.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 121 (47.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 71 AQDPANVAANQASKEEA---DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F 126
+Q ++V A+ + + S +FVG + Y+ +++ F G V I+ D+
Sbjct: 12 SQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRET 71
Query: 127 GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKV 161
G+ +GFA+V F + A+QL+ +LHGR+++V
Sbjct: 72 GRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRV 106
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 125 (49.1 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 125 (49.1 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 125 (49.1 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 125 (49.1 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +FV + ++CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 497 EKHKLFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQAV 556
Query: 147 LQLNESELHGRQLKVL---PKRTNVPGMKQYR 175
L+++ + +KV P + VP + R
Sbjct: 557 LKMDGMTIRENVIKVAISNPPQRKVPEKPEAR 588
Score = 118 (46.6 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 36/115 (31%), Positives = 56/115 (48%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYAC-TPEE-VQQHFQSCGTVNRVTIL 122
E +GA + + +SK D +VFV N+ Y P ++ F++CG V V +
Sbjct: 380 EVRVGARRRDVPKVPHDSSK---DGVTVFVSNLPYGLGEPAATLRPLFEACGDVVEVRPI 436
Query: 123 TDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP--KRTNVPGMKQYR 175
G +G+ YVEF E A +ALQL+ + GR + V P ++ P K +R
Sbjct: 437 FSNRGDFRGYCYVEFREEAAALQALQLDRQSVEGRPMFVSPCVDKSKNPDFKVFR 491
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 104 (41.7 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTI---LTDKFGQPKGFAYVEFLEIDAVQEAL- 147
+FVG +D + + F S G + + + +T K + +GFA+VE++E+D + AL
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTK--KNRGFAFVEYVEVDDAKHALY 67
Query: 148 QLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+N EL+G+++ V +T Y+P
Sbjct: 68 NMNNFELNGKRIHVNYSKTKKAD--HYKP 94
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 104 (41.7 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTI---LTDKFGQPKGFAYVEFLEIDAVQEAL- 147
+FVG +D + + F S G + + + +T K + +GFA+VE++E+D + AL
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTK--KNRGFAFVEYVEVDDAKHALY 67
Query: 148 QLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+N EL+G+++ V +T Y+P
Sbjct: 68 NMNNFELNGKRIHVNYSKTKKAD--HYKP 94
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 123 (48.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 121 (47.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 75 ANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFA 133
A A ASK E D +F+G + + T ++++ +F G V T+ D G+ +GF
Sbjct: 61 AEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 120
Query: 134 YVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+V F E ++V + + E +L+G+ + PKR MK P
Sbjct: 121 FVLFKESESVDKVMDQKEHKLNGKVID--PKRAKA--MKTKEP 159
>ZFIN|ZDB-GENE-030131-6724 [details] [associations]
symbol:zgc:77304 "zgc:77304" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6724 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG009324 KO:K13188 HSSP:O08583
EMBL:BC049507 IPI:IPI00496411 RefSeq:NP_956219.1 UniGene:Dr.75468
ProteinModelPortal:Q7ZWA5 SMR:Q7ZWA5 STRING:Q7ZWA5 GeneID:334784
KEGG:dre:334784 NextBio:20810542 ArrayExpress:Q7ZWA5 Uniprot:Q7ZWA5
Length = 252
Score = 119 (46.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQ 144
+EAD R++FVGN+D T E + + F G + +V I + G+ K FA+V F +V
Sbjct: 5 DEAD-RTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNEGKSKLFAFVNFKHEVSVP 63
Query: 145 EALQL-NESELHGRQLKV 161
AL L N LHGRQL +
Sbjct: 64 YALNLLNGIRLHGRQLNI 81
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/111 (31%), Positives = 53/111 (47%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFL 138
N A +E +FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F
Sbjct: 2 NSAGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 139 EIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGRR 189
+ + V L L GR + PK GM+ P R P G++G R
Sbjct: 60 DPNCVGTVLASRPHTLDGRNID--PKPCTPRGMQ---PERTRPKEGWKGPR 105
Score = 118 (46.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 107 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 166
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 167 DQAVNMHFHDIMGKKVEV--KRAEPRDSKNQAP 197
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 120 (47.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/106 (28%), Positives = 54/106 (50%)
Query: 61 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 120
QA+ + + + P N ASK + D +F+G + + + +++ + G V T
Sbjct: 2 QAEEQGDFSTDEFPEGSKIN-ASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCT 60
Query: 121 ILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
I TD G+ +GF +V F + ++V L+L E +L G+ + PKR
Sbjct: 61 IKTDPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLID--PKR 104
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 103 (41.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFL 138
+ +S + ++ ++VGN+ Y ++ Q+F G + V I+ + + G+ KG+A+V ++
Sbjct: 34 DDSSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYV 93
Query: 139 EIDAVQEALQLNESELHGRQLKV 161
+AL + +L GR L V
Sbjct: 94 TPKQAVKALDAHGKDLQGRSLVV 116
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 103 (41.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFL 138
+ +S + ++ ++VGN+ Y ++ Q+F G + V I+ + + G+ KG+A+V ++
Sbjct: 34 DDSSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYV 93
Query: 139 EIDAVQEALQLNESELHGRQLKV 161
+AL + +L GR L V
Sbjct: 94 TPKQAVKALDAHGKDLQGRSLVV 116
>POMBASE|SPBC365.04c [details] [associations]
symbol:SPBC365.04c "RNA-binding protein, involved in
ribosome biogenesis (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISS;IDA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC365.04c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000001011 KO:K14789 OMA:GPRFILF OrthoDB:EOG4JHGRC
PIR:T40311 RefSeq:NP_596033.1 ProteinModelPortal:Q9Y7Y3
STRING:Q9Y7Y3 PRIDE:Q9Y7Y3 EnsemblFungi:SPBC365.04c.1
GeneID:2540924 KEGG:spo:SPBC365.04c NextBio:20802039 Uniprot:Q9Y7Y3
Length = 233
Score = 118 (46.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/106 (29%), Positives = 56/106 (52%)
Query: 61 QAKVEKEMGAAQDPANVAANQASKEEADSRSV--FVGNVDYACTPEEVQQHFQSCGTVNR 118
Q+ + + + P ++ K + + R V FVGN+ + E +Q HF+ G V
Sbjct: 61 QSNDKDKHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPS 120
Query: 119 VTILTDKF-GQPKGFAYVEFL--EIDAVQEALQLNESELHGRQLKV 161
V I TDK G+ KG+A+VEF+ + D + +AL+ + + R++ +
Sbjct: 121 VRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINI 166
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 112 (44.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG-QPKGFAYVEFLEIDAVQEALQ- 148
S+ V N+ Y +PE +++ F+ G V V I D++ + +GFA+V F + ++A+
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 149 LNESELHGRQLKVLPKRTNVPGMKQYRPRRFNP--YMGYRGRR 189
++ + L GR+L+V R P Y R P Y GY GRR
Sbjct: 75 MDGALLDGRELRVQMARYGRPPDAHYSRRGAPPRRYGGY-GRR 116
Score = 35 (17.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 9 YGGEIPDVEG 18
YG PDVEG
Sbjct: 3 YGRPPPDVEG 12
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 120 (47.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPK 130
Q A + ASK E D +FVG + + T ++++ +F G V T+ D G+ +
Sbjct: 36 QGEAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSR 95
Query: 131 GFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
GF +V F E ++V++ + E +L+G+ + PK+ MK P
Sbjct: 96 GFGFVLFKEAESVEKVITQKEHKLNGKVID--PKKAKA--MKTKEP 137
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 71 AQDPANV-AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQ 128
A P N A NQ +E + S+++GN+ Y T + FQ + V I D+ G
Sbjct: 151 ASKPGNRDAMNQ--EERTPTSSLYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGW 208
Query: 129 PKGFAYVEFLEIDAVQEALQ-LNESELHGRQLKVLPKRTNVP 169
P+GFA+ +F ++++ +A++ + EL GR L+V VP
Sbjct: 209 PRGFAHADFKDVESATKAVEKVKLMELMGRTLRVDYSTPRVP 250
Score = 118 (46.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 30/111 (27%), Positives = 52/111 (46%)
Query: 64 VEKEMGAAQDPANVAANQASK--EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
+ + ++ ANV N S + +FV N+ + T E + + F G V +
Sbjct: 45 IARAFSVSRTLANVEENSGSSLPRQEQPNGIFVRNLVFDATNEHLAEAFSQYGNVVDAKV 104
Query: 122 LTDKFGQPKGFAYVEFLEIDAVQEALQ-LNESELHGRQLKVLPK-RTNVPG 170
D G KGF ++ F +A Q+A + N + HGR++ V P+ + + PG
Sbjct: 105 ARDARGLSKGFGFIYFETPEAAQKACEEANNTFWHGRRINVAPRIKASKPG 155
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 119 (46.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQE 145
EAD R++FVGN+D T E + + F G V +V I DK G+ K FA+V F ++V
Sbjct: 7 EAD-RTLFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQKQFAFVSFKHEESVPY 65
Query: 146 ALQL-NESELHGRQLKV 161
+ L N +L+GR + +
Sbjct: 66 GMNLLNGIKLYGRPINI 82
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 123 (48.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 74 PANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGF 132
P N A + + EE D R++ + + P ++++ F + G V V I+TD + G+ KG
Sbjct: 155 PKN-AKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGI 213
Query: 133 AYVEFLEIDAVQEALQLNESELHGRQLKV 161
YVEF + ++V L LN L G L++
Sbjct: 214 CYVEFWDEESVPLGLALNGQRLMGAPLQI 242
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 123 (48.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 123 (48.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>UNIPROTKB|F8W0K0 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021052
ProteinModelPortal:F8W0K0 SMR:F8W0K0 Ensembl:ENST00000551002
ArrayExpress:F8W0K0 Bgee:F8W0K0 Uniprot:F8W0K0
Length = 170
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQP 129
AA++P N+ ++ K + + F+GN+ Y T E +++ F+ ++ V + +
Sbjct: 33 AAREP-NIDRSRLPK--SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPE 88
Query: 130 --KGFAYVEFLEIDAVQEALQLNESELHGRQLKV 161
KGF Y EF ++D++ AL LNE L R+++V
Sbjct: 89 RLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 122
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 119 (46.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/98 (23%), Positives = 48/98 (48%)
Query: 68 MGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 127
+ ++ P NQ+ KE R +F+G + + T E ++ HF+ G + ++
Sbjct: 1 LNSSPPPLPSCLNQSPKELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDCVVMDPNTK 60
Query: 128 QPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165
+ +GF +V + ++ V A+ ++ GR ++ PKR
Sbjct: 61 RSRGFGFVTYTTVEEVDAAMNARPQKMDGRVVE--PKR 96
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 123 (48.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 39/125 (31%), Positives = 60/125 (48%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQ--QHFQSCGTVNRVTIL 122
E E G Q+ Q + D+ +VFV N+ Y T EV+ + F+SCG V++V +
Sbjct: 614 EGEWG--QEEEEDPLRQREHDSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPV 671
Query: 123 TDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP---KRTNVPGMKQYRPRRF 179
G +G+ YVEF + + +AL ++ + GR + V P K N P K F
Sbjct: 672 FSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMFVSPCVDKNKN-PDFKV----NF 726
Query: 180 NPYMG 184
N + G
Sbjct: 727 NSFSG 731
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 38/116 (32%), Positives = 61/116 (52%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQ--QHFQSCGTVNRVTIL 122
EK + +D V + +SK D+ +VFV N+ Y T EV+ + F+SCG V++V +
Sbjct: 567 EKPSTSRKDVPKVL-HDSSK---DNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPV 622
Query: 123 TDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP---KRTNVPGMKQYR 175
G +G+ YVEF + + +AL ++ + GR + V P K N P K +R
Sbjct: 623 FSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMFVSPCVDKNKN-PDFKVFR 677
Score = 112 (44.5 bits), Expect = 0.00058, P = 0.00058
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +F+ + ++CT EE++ ++ G V + ++T++ G+PKG AYVE+ E A Q
Sbjct: 683 EKHKLFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAV 742
Query: 147 LQLNESELHGRQLKV 161
L+++ + +KV
Sbjct: 743 LKMDGLTIKEHVIKV 757
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 108 (43.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/99 (26%), Positives = 56/99 (56%)
Query: 67 EMGAAQDPANVAANQASKEEA--DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 124
E+ + +D + +++ +E + DS +++VGN+ + T E++ + F CG V + + D
Sbjct: 6 ELSSYRDQ-HFKGSRSEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLD 64
Query: 125 KFGQ-PKGFAYVEFLEIDAVQEALQ-LNESELHGRQLKV 161
K+ + P GF +VE+ + A++ +N + L R ++V
Sbjct: 65 KYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRV 103
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 69 GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSC-GTVNRVTILTDKFG 127
GA VAA S+E + R V++ N+ Y ++++ F+ G++ V + D+ G
Sbjct: 37 GAGSQGGGVAARDRSRERRNCR-VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESG 95
Query: 128 QPKGFAYVEFLEIDAVQEALQ-LNESELHGRQLKV 161
+ +G VEF + + VQ+AL+ +N E++GR+L V
Sbjct: 96 KARGCGIVEFKDPENVQKALEKMNRYEVNGRELVV 130
>FB|FBgn0031224 [details] [associations]
symbol:CG11454 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 eggNOG:NOG273605 EMBL:BT021281
ProteinModelPortal:Q5BIE3 STRING:Q5BIE3 PaxDb:Q5BIE3 PRIDE:Q5BIE3
FlyBase:FBgn0031224 InParanoid:Q5BIE3 OrthoDB:EOG49ZW5B
ArrayExpress:Q5BIE3 Bgee:Q5BIE3 Uniprot:Q5BIE3
Length = 238
Score = 116 (45.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 32/101 (31%), Positives = 50/101 (49%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAV 143
+E+ + R++F GN+D T E + + F G + V I TD G+P+ F +V + + AV
Sbjct: 64 EEDEEQRTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQRLCAV 123
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRF-NPYM 183
AL L + L Q KV K+ + Y R N +M
Sbjct: 124 PFALDLYQG-LELFQKKVTIKQQGGKQLPAYNQSRLRNQFM 163
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 123 (48.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 38/116 (32%), Positives = 61/116 (52%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQ--QHFQSCGTVNRVTIL 122
EK + +D V + +SK D+ +VFV N+ Y T EV+ + F+SCG V++V +
Sbjct: 577 EKPSTSRKDVPKVL-HDSSK---DNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPV 632
Query: 123 TDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP---KRTNVPGMKQYR 175
G +G+ YVEF + + +AL ++ + GR + V P K N P K +R
Sbjct: 633 FSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMFVSPCVDKNKN-PDFKVFR 687
Score = 112 (44.5 bits), Expect = 0.00065, P = 0.00065
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +F+ + ++CT EE++ ++ G V + ++T++ G+PKG AYVE+ E A Q
Sbjct: 693 EKHKLFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAV 752
Query: 147 LQLNESELHGRQLKV 161
L+++ + +KV
Sbjct: 753 LKMDGLTIKEHVIKV 767
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 120 (47.3 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 31/101 (30%), Positives = 53/101 (52%)
Query: 63 KVEKEMGAAQDPANVAANQASK-EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121
+ E G DP+ V AN + E R ++VGN+D A T + ++Q+FQ G + + I
Sbjct: 48 QAEDNQGE-NDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKI 106
Query: 122 LTDKFGQPKGFAYVEFLEIDAVQEALQ-LNESELHGRQLKV 161
+ DK + +A+VE+ + ALQ LN ++ +K+
Sbjct: 107 MIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 147
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 120 (47.3 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQ 148
S S+FVGN+ Y TPE++ + F G V R I+T + G +G VEF D V A++
Sbjct: 160 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIR 218
Query: 149 LNESELHGRQLKVLPKRTNVPGMKQYRPRR 178
+ K+ ++ N P + R+
Sbjct: 219 QYDGAFF-MDRKIFVRQDNPPPSNNIKERK 247
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 51 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 110
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 111 DQAVNMHFHDIMGKKVEV--KRAEPRDSKSQAP 141
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 100 (40.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 95 GNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ-LNES 152
GN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++ LN
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 153 ELHGRQLKV 161
E GR L+V
Sbjct: 62 EFSGRALRV 70
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 100 (40.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQ-L 149
++VGN++Y ++++ F + GTV ++ D+ G+ +GF +VE Q A+ L
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 150 NESELHGRQLKV 161
N E+ GR L V
Sbjct: 65 NGKEMDGRNLMV 76
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 119 (46.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 26/106 (24%), Positives = 57/106 (53%)
Query: 81 QASKEEAD-SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFL 138
+ SK +++ S+ +FVG + + C E++ +F G V V ++ D Q P+GF ++ F
Sbjct: 103 KGSKSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFE 162
Query: 139 EIDAVQEALQLNESELHGRQLKVL---PKRTNVPGMKQYRPRRFNP 181
+V +A+ ++ ++ G++++V P+ + P Q ++ P
Sbjct: 163 AEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQWGP 208
Score = 111 (44.1 bits), Expect = 0.00031, P = 0.00031
Identities = 28/94 (29%), Positives = 47/94 (50%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLN 150
+FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F + + V+ L
Sbjct: 13 LFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDTK 72
Query: 151 ESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMG 184
L GR + PK GM+ + R + + G
Sbjct: 73 PHNLDGRNID--PKPCTPRGMQPEKTRTKDGWKG 104
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 119 (46.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + S EE D+R+VF + P +++ F + G V V I++D+ + K
Sbjct: 139 KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 198
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF EI +V A+ L L G
Sbjct: 199 GIAYVEFCEIQSVPLAIGLTGQRLLG 224
>MGI|MGI:1914260 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
Length = 265
Score = 116 (45.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+ K FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 116 (45.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+ K FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEV 61
Query: 142 AVQEALQL-NESELHGRQLKV 161
+V A+ L N +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 20/77 (25%), Positives = 46/77 (59%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQE 145
++ +FVG +++ + ++ HF+S G ++ V ++ D+ Q +GF ++ F + + +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASD 62
Query: 146 ALQ-LNESELHGRQLKV 161
A++ +N L GRQ++V
Sbjct: 63 AMRAMNGESLDGRQIRV 79
>UNIPROTKB|F8VYE9 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021378
ProteinModelPortal:F8VYE9 SMR:F8VYE9 Ensembl:ENST00000550390
ArrayExpress:F8VYE9 Bgee:F8VYE9 Uniprot:F8VYE9
Length = 185
Score = 112 (44.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQP 129
AA++P N+ ++ K + + F+GN+ Y T E +++ F+ ++ V + +
Sbjct: 79 AAREP-NIDRSRLPK--SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPE 134
Query: 130 --KGFAYVEFLEIDAVQEALQLNESELHGRQLKV 161
KGF Y EF ++D++ AL LNE L R+++V
Sbjct: 135 RLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 168
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 119 (46.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + S EE D+R+VF + P +++ F + G V V I++D+ + K
Sbjct: 148 KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 207
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF EI +V A+ L L G
Sbjct: 208 GIAYVEFCEIQSVPLAIGLTGQRLLG 233
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 118 (46.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 25/93 (26%), Positives = 50/93 (53%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
E + S +FVG + + C E++++F G V V ++ D Q P+GF ++ F + +V
Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 169 DQAVNMHFHDIMGKKVEV--KRAEPRDSKSQTP 199
Score = 109 (43.4 bits), Expect = 0.00046, P = 0.00046
Identities = 30/96 (31%), Positives = 47/96 (48%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLN 150
+FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F + + V L
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 151 ESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYR 186
L GR + PK GM+ P R P G++
Sbjct: 72 PHTLDGRNID--PKPCTPRGMQ---PERSRPREGWQ 102
>WB|WBGene00012245 [details] [associations]
symbol:W04D2.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477 GO:GO:0003676
Gene3D:1.20.1390.10 EMBL:Z75552 SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 EMBL:Z75551 GeneID:259655
KEGG:cel:CELE_W04D2.6 CTD:259655 RefSeq:NP_001256427.1
ProteinModelPortal:H2L2D0 SMR:H2L2D0 EnsemblMetazoa:W04D2.6c.1
EnsemblMetazoa:W04D2.6c.2 WormBase:W04D2.6c OMA:VENDFMM
Uniprot:H2L2D0
Length = 707
Score = 121 (47.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 79 ANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL 138
A Q+S+++ DS VFVGN+ C+ E +++ CG V + G+ +GF + F
Sbjct: 36 AQQSSQQKPDSSPVFVGNISDKCSDEFIRKILNECGNVASWKRIKGSNGKLQGFGFCHFT 95
Query: 139 EIDAVQEALQ-LNESELHGRQLKVLP 163
+++ AL+ L+E L ++L V P
Sbjct: 96 DLEGTLRALRILHEFHLGDKKLTVKP 121
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 118 (46.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 73 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 132
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 133 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 181
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 99 (39.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLN 150
+F+G + + T ++++ +F G V T+ D G+ +GF +V F E ++V + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 151 ESELHGRQLKVLPKRTNVPGMKQYRP 176
E +L+G+ + PKR MK P
Sbjct: 61 EHKLNGKVID--PKRAKA--MKTKEP 82
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 119 (46.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + S EE D+R+VF + P +++ F + G V V I++D+ + K
Sbjct: 163 KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 222
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF EI +V A+ L L G
Sbjct: 223 GIAYVEFCEIQSVPLAIGLTGQRLLG 248
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 108 (43.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQE 145
+D +FVG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 146 ALQ-LNESELHGRQLKV 161
A+ +N + GRQ++V
Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 119 (46.9 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDA 142
+E+ + +FVG V CT EE + F G V T++ DK G+P+GF +V + A
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 143 VQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMG 184
V+ + +HG+ ++V + T ++ R + Y G
Sbjct: 301 VEATMSQPYITIHGKPVEV-KRATPKASLRDSHDRHQHGYHG 341
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 117 (46.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE 139
++A +E++ R+V+V ++D + T E + F +CG V I D + FA+VEF +
Sbjct: 131 SKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR-FAFVEFAD 189
Query: 140 IDAVQEALQLNESELHGRQLKVLPKRTNV-PGMKQYRPR 177
EAL L + L ++VLP +T + P + PR
Sbjct: 190 DQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPR 228
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 118 (46.6 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 98 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 157
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 158 DQAVNMHFHDIMGKKVEV--KRAEPRDSKSQAP 188
Score = 110 (43.8 bits), Expect = 0.00040, P = 0.00040
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLN 150
+FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F + + V L
Sbjct: 2 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 61
Query: 151 ESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGY-RGRR 189
L GR + PK GM+ P R P G+ +G R
Sbjct: 62 PHTLDGRNID--PKPCTPRGMQ---PERTRPKEGWQKGPR 96
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 118 (46.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 168 DQAVNMHFHDIMGKKVEV--KRAEPRDSKNQAP 198
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 35/112 (31%), Positives = 53/112 (47%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFL 138
N A +E +FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F
Sbjct: 2 NSAGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 139 EIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGY-RGRR 189
+ + V L L GR + PK GM+ P R P G+ +G R
Sbjct: 60 DPNCVGTVLASRPHTLDGRNID--PKPCTPRGMQ---PERTRPKEGWQKGPR 106
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 118 (46.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 168 DQAVNMHFHDIMGKKVEV--KRAEPRDSKNQAP 198
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 35/112 (31%), Positives = 53/112 (47%)
Query: 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFL 138
N A +E +FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F
Sbjct: 2 NSAGADEIGK--LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Query: 139 EIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGY-RGRR 189
+ + V L L GR + PK GM+ P R P G+ +G R
Sbjct: 60 DPNCVGTVLASRPHTLDGRNID--PKPCTPRGMQ---PERTRPKEGWQKGPR 106
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 118 (46.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 168 DQAVNMHFHDIMGKKVEV--KRAEPRDSKSQAP 198
Score = 110 (43.8 bits), Expect = 0.00041, P = 0.00041
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLN 150
+FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F + + V L
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 151 ESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGY-RGRR 189
L GR + PK GM+ P R P G+ +G R
Sbjct: 72 PHTLDGRNID--PKPCTPRGMQ---PERTRPKEGWQKGPR 106
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 118 (46.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 168 DQAVNMHFHDIMGKKVEV--KRAEPRDSKSQAP 198
Score = 110 (43.8 bits), Expect = 0.00041, P = 0.00041
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLN 150
+FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F + + V L
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 151 ESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGY-RGRR 189
L GR + PK GM+ P R P G+ +G R
Sbjct: 72 PHTLDGRNID--PKPCTPRGMQ---PERTRPKEGWQKGPR 106
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 118 (46.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/93 (25%), Positives = 51/93 (54%)
Query: 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAV 143
+ + S +FVG + + C E++++F+ G V V ++ D Q P+GF ++ F + +V
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 144 QEALQLNESELHGRQLKVLPKRTNVPGMKQYRP 176
+A+ ++ ++ G++++V KR K P
Sbjct: 168 DQAVNMHFHDIMGKKVEV--KRAEPRDSKSQAP 198
Score = 110 (43.8 bits), Expect = 0.00041, P = 0.00041
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLN 150
+FVG +D++ T E ++ +F G V I+ DK Q +GF +V+F + + V L
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 151 ESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGY-RGRR 189
L GR + PK GM+ P R P G+ +G R
Sbjct: 72 PHTLDGRNID--PKPCTPRGMQ---PERTRPKEGWQKGPR 106
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 119 (46.9 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 29/102 (28%), Positives = 58/102 (56%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G ++ + ++ D + G+
Sbjct: 226 AEKNRAAALANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGR 285
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTN 167
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+
Sbjct: 286 SKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTD 327
Score = 109 (43.4 bits), Expect = 0.00082, P = 0.00082
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V I++D+ + K
Sbjct: 131 RSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSK 190
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AY+EF++ +V A+ L+ L G
Sbjct: 191 GIAYIEFVDSTSVPLAIGLSGQRLLG 216
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 118 (46.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00060, P = 0.00060
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 118 (46.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/90 (26%), Positives = 55/90 (61%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQL 149
+++F+G + Y + +++++ F+S G + V I+ DK +P+G+A++EF ++ +A +L
Sbjct: 98 KTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKL 157
Query: 150 NESE-LHGRQLKVLPKRTNVPGMKQYRPRR 178
+ + + R++ V +R +K + PRR
Sbjct: 158 ADGKKIENRRILVDIERGRT--IKNWIPRR 185
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 118 (46.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/90 (26%), Positives = 55/90 (61%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQL 149
+++F+G + Y + +++++ F+S G + V I+ DK +P+G+A++EF ++ +A +L
Sbjct: 98 KTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSMNDAYKL 157
Query: 150 NESE-LHGRQLKVLPKRTNVPGMKQYRPRR 178
+ + + R++ V +R +K + PRR
Sbjct: 158 ADGKKIENRRILVDIERGRT--IKNWIPRR 185
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 118 (46.6 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + S EE D+R+VF + P +++ F + G V V I++D+ + K
Sbjct: 133 KSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 192
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF EI +V A+ L L G
Sbjct: 193 GIAYVEFCEIQSVPLAIGLTGQRLLG 218
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 109 (43.4 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQEAL 147
S +++VGN+ + T E++Q+ F CG V R+ + DK + P GF +VE+ + A+
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 148 Q-LNESELHGRQLK 160
+ +N + L R ++
Sbjct: 102 RFINGTRLDDRIIR 115
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 119 (46.9 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 76 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 135
N A+ +K A ++VGN+ ++ ++Q F+ G + V + D+ G+ +G+ +V
Sbjct: 259 NSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDETGRSRGYGFV 318
Query: 136 EFLEIDAVQEALQ-LNESELHGRQLKV 161
+F + + +EAL+ +N +L GR ++V
Sbjct: 319 QFRDPNQAREALEKMNGYDLGGRAIRV 345
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 118 (46.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + S EE D+R+VF + P +++ F + G V V I++D+ + K
Sbjct: 149 KSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 208
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF EI +V A+ L L G
Sbjct: 209 GIAYVEFCEIQSVPLAIGLTGQRLLG 234
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 106 (42.4 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/77 (25%), Positives = 44/77 (57%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQE 145
++ +FVG +++ + ++ HF S G ++ V ++ D+ Q +GF ++ F + +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 146 ALQ-LNESELHGRQLKV 161
A++ +N L GRQ++V
Sbjct: 63 AMRAMNGESLDGRQIRV 79
>RGD|1585290 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1585290 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473982 CTD:81892
GeneTree:ENSGT00390000008624 OrthoDB:EOG4Z62Q4 IPI:IPI00365864
RefSeq:NP_001102977.1 UniGene:Rn.65910 Ensembl:ENSRNOT00000016479
GeneID:688717 KEGG:rno:688717 UCSC:RGD:1585290 NextBio:737107
Uniprot:D4A4W6
Length = 111
Score = 98 (39.6 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 93 FVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNE 151
F+ + + E+++HF G V R T+ DK G +G +V+F + +Q ALQ
Sbjct: 22 FIRKIPWTAASSELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQEEH 81
Query: 152 SELHGRQLKVLPKRTNV 168
+ G ++ V P++ V
Sbjct: 82 HIIDGVEIHVQPQKPKV 98
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 118 (46.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + S EE D+R+VF + P +++ F + G V V I++D+ + K
Sbjct: 161 KSPVREPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 220
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF EI +V A+ L L G
Sbjct: 221 GIAYVEFCEIQSVPLAIGLTGQRLLG 246
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 118 (46.6 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEID 141
+ + R VFVGN+ Y T E++++ G V ++TD+ G+PKG+ + E+ + +
Sbjct: 2 ASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
Query: 142 AVQEALQ-LNESELHGRQLKV 161
A + L E++GRQL+V
Sbjct: 62 TALSARRNLQSYEINGRQLRV 82
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 115 (45.5 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 88 DSRSVFVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDA 142
D + +FV D + + ++++ +HF SCG + V++ D+ G KG AY+EF E
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE--G 456
Query: 143 VQEALQLNESELHG 156
++AL+LN S++ G
Sbjct: 457 KEKALELNGSDMGG 470
Score = 39 (18.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 65 EKEMGAAQDPANVAANQASKEEADSRS 91
E+E A + PA AA+ + + DS S
Sbjct: 72 EEEEKAKKVPAKKAASSSDESSDDSSS 98
Score = 35 (17.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEAD 88
A V+KE + P V ++ S E++
Sbjct: 46 AAVQKEKAVKKVPKKVESSDDSDSESE 72
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 117 (46.2 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+K ++ S+FV N+ + CTPE++++ F + G V I+T K G +G VEF + +
Sbjct: 115 ATKRNFEN-SIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNE 172
Query: 142 AVQEALQLNESELHGRQLKVLPKRTNVP 169
+VQ+A+ + L K++ ++ N P
Sbjct: 173 SVQDAISKFDGALF-MDRKLMVRQDNPP 199
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 117 (46.2 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 38/118 (32%), Positives = 59/118 (50%)
Query: 75 ANVAANQASKEEADSRS--VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF 132
+N AA S+ + DS + +FVG +D T EE++Q F G V V++ K KG
Sbjct: 278 SNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEV--VSV---KIPAGKGC 332
Query: 133 AYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMG-YRGRR 189
+V+F + + QEA+Q + G+Q L + P KQ R + + G Y GR+
Sbjct: 333 GFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRS-PANKQMRTDSGSQWNGGYNGRQ 389
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 118 (46.6 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00082, P = 0.00082
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 118 (46.6 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00082, P = 0.00082
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 118 (46.6 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00082, P = 0.00082
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 118 (46.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00083, P = 0.00083
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 118 (46.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00083, P = 0.00083
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 118 (46.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00083, P = 0.00083
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 118 (46.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00083, P = 0.00083
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 118 (46.6 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 70 AAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 128
A ++ A AN K A ++VG++ + T + ++ F+ G + + ++ D + G+
Sbjct: 230 AEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289
Query: 129 PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV--LPKRTNVPGMKQY 174
KG+ ++ F + + ++AL QLN EL GR +KV + +RT+ +
Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSF 338
Score = 109 (43.4 bits), Expect = 0.00083, P = 0.00083
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PK 130
+ P + + EE D+R+VF + P ++++ F + G V V +++D+ + K
Sbjct: 135 KSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSK 194
Query: 131 GFAYVEFLEIDAVQEALQLNESELHG 156
G AYVEF+++ +V A+ L + G
Sbjct: 195 GIAYVEFVDVSSVPLAIGLTGQRVLG 220
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 97 (39.2 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQEALQLN 150
+FV + ++ E ++ HF G + ++ D+ + KGF +V+F ++VQ A+ +
Sbjct: 6 IFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAIN-S 64
Query: 151 ESELHGRQLKV 161
++E++GR+L V
Sbjct: 65 DNEINGRKLVV 75
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 108 (43.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQEAL 147
S +++VGN+ + T E++Q+ F CG V R+ + DK + P GF +VE+ + A+
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 148 Q-LNESELHGR 157
+ +N + L R
Sbjct: 102 RFINGTRLDDR 112
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 108 (43.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQE 145
+D +FVG + + + ++Q F G ++ V ++ D+ Q +GF +V F ID ++
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 146 ALQ-LNESELHGRQLKV 161
A+ +N + GRQ++V
Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 106 (42.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 20/77 (25%), Positives = 44/77 (57%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFLEIDAVQE 145
++ +FVG +++ + ++ HF S G ++ V ++ D+ Q +GF ++ F + +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 146 ALQ-LNESELHGRQLKV 161
A++ +N L GRQ++V
Sbjct: 63 AMRAMNGESLDGRQIRV 79
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 115 (45.5 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 79 ANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL 138
A++A +E++ R+V+V ++D + T E + F SCG V I D + FA+VEF
Sbjct: 117 ASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEFS 175
Query: 139 EIDAVQEALQLNESELHGRQLKVLPKRTNV-PGMKQYRPR 177
+ + AL L + + ++VLP +T + P + PR
Sbjct: 176 DDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPR 215
Score = 114 (45.2 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 74 PANVAANQASKEEAD--SRSVFVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQPK 130
P N S++E + SR+++ NVD T ++V FQS CG V R+ +L D+ +
Sbjct: 207 PVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTR 266
Query: 131 GFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNV 168
A+VEF ++ AL + L + ++V P +T V
Sbjct: 267 -IAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPV 303
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 115 (45.5 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 76 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAY 134
N ++ S D +F+G + + T E ++ +F G VN ++ D + +GF +
Sbjct: 31 NADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGF 90
Query: 135 VEFLEIDAVQEALQLNESELHGRQL--KV-LPKRT 166
+ F++ +V + L E EL G+++ KV PKRT
Sbjct: 91 ITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRT 125
>UNIPROTKB|F1RGA7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 OMA:SQAVMKM EMBL:CU424486
RefSeq:XP_001926720.3 UniGene:Ssc.37664 Ensembl:ENSSSCT00000010898
GeneID:100152586 KEGG:ssc:100152586 Uniprot:F1RGA7
Length = 959
Score = 120 (47.3 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACT-PEEVQQH-FQSCGTVNRV 119
+K ++ + A + + +SK D +VFV N+ Y+ P V + F++CG V +
Sbjct: 675 SKPKERVAAPRRDVPKVLHDSSK---DGITVFVSNLPYSLEEPATVLRPLFEACGDVVEI 731
Query: 120 TILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP--KRTNVPGMKQYR 175
+ G +G+ YVEF E A Q AL+L+ + GR + V P ++ P K +R
Sbjct: 732 RPIFSNRGDFRGYCYVEFKEEAAAQRALELDRKSVEGRPMFVSPCVDKSKNPDFKVFR 789
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEA 146
+ +F+ + ++CT EE+++ ++ GTV + ++T++ G+PKG AYVE+ E A Q
Sbjct: 795 EKHKLFISGLPFSCTREELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENESQASQAV 854
Query: 147 LQLNESELHGRQLKV 161
L+++ + +KV
Sbjct: 855 LKMDGMTVKENIIKV 869
WARNING: HSPs involving 221 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 237 183 0.00076 110 3 11 22 0.47 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 471
No. of states in DFA: 560 (60 KB)
Total size of DFA: 146 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.69u 0.14s 15.83t Elapsed: 00:00:01
Total cpu time: 15.71u 0.14s 15.85t Elapsed: 00:00:01
Start: Mon May 20 17:34:13 2013 End: Mon May 20 17:34:14 2013
WARNINGS ISSUED: 2