BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041633
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 100/145 (68%), Gaps = 14/145 (9%)
Query: 32 ADDDAV----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPANVAANQASKEEA 87
+D DA+ KEL EMK+R+ EME EAA LR MQ +++ E A ++ KE
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESI 52
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEA 146
D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E V A
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 147 LQLNESELHGRQLKVLPKRTNVPGM 171
L LN S LH R LKV PKRTNVPGM
Sbjct: 113 LLLNGSMLHERPLKVTPKRTNVPGM 137
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 112/182 (61%), Gaps = 25/182 (13%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGN 96
EL+ +K R+KEMEEEA +++MQ++V+K+M G+ A V + K+E D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGN 102
Query: 97 VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELH 155
VDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 156 GRQLKVLPKRTNVPGMK--------QYRPR--RFN------------PYMGYRGRRPYVP 193
GRQ+KV+ KRTN PG+ +R R R + MGYRGR Y
Sbjct: 163 GRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYA 222
Query: 194 PY 195
PY
Sbjct: 223 PY 224
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 21/183 (11%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGN 96
EL+ +K R+KEMEEEA +++MQ++V+K+M G+ A V + K+E D+RSV+VGN
Sbjct: 43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGN 102
Query: 97 VDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELH 155
VDY + EE++ HF CGT+NRVTIL +K G PKGFAY+EF + V+ AL +NE+
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162
Query: 156 GRQLKVLPKRTNVPGM-------------KQYRPRRFNPYMGYRGRRPYVPPY-----FY 197
GRQ+KV+ KRTN PG+ + R R + +RG R + Y +Y
Sbjct: 163 GRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYY 222
Query: 198 SPY 200
+PY
Sbjct: 223 APY 225
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 101/137 (73%), Gaps = 4/137 (2%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVG 95
EL+ +K R++EMEEEA L+E+Q +VEK+M + P N V + K EAD+RS++VG
Sbjct: 114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVG 173
Query: 96 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESEL 154
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES
Sbjct: 174 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 233
Query: 155 HGRQLKVLPKRTNVPGM 171
GRQ+KV+PKRTN PG+
Sbjct: 234 RGRQIKVIPKRTNRPGI 250
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 101/137 (73%), Gaps = 4/137 (2%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVG 95
EL+ +K R++EMEEEA L+E+Q +VEK+M + P N V + K EAD+RS++VG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 96 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESEL 154
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 155 HGRQLKVLPKRTNVPGM 171
GRQ+KV+PKRTN PG+
Sbjct: 238 RGRQIKVIPKRTNRPGI 254
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 101/137 (73%), Gaps = 4/137 (2%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVG 95
EL+ +K R++EMEEEA L+E+Q +VEK+M + P N V + K EAD+RS++VG
Sbjct: 118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 177
Query: 96 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESEL 154
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES
Sbjct: 178 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 237
Query: 155 HGRQLKVLPKRTNVPGM 171
GRQ+KV+PKRTN PG+
Sbjct: 238 RGRQIKVIPKRTNRPGI 254
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 133 bits (335), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 101/137 (73%), Gaps = 4/137 (2%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVG 95
EL+ +K R++EMEEEA L+E+Q +VEK+M + P N V + K EAD+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 168
Query: 96 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESEL 154
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLF 228
Query: 155 HGRQLKVLPKRTNVPGM 171
GRQ+KV+PKRTN PG+
Sbjct: 229 RGRQIKVVPKRTNRPGI 245
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 133 bits (335), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 101/137 (73%), Gaps = 4/137 (2%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVG 95
EL+ +K R++EMEEEA L+E+Q +VEK+M + P N V + K EAD+RS++VG
Sbjct: 108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVG 167
Query: 96 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESEL 154
NVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES
Sbjct: 168 NVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLF 227
Query: 155 HGRQLKVLPKRTNVPGM 171
GRQ+KV+PKRTN PG+
Sbjct: 228 RGRQIKVVPKRTNRPGI 244
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 101/137 (73%), Gaps = 4/137 (2%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVG 95
EL+ +K R++EMEEEA L+E+Q +VEK+M + P N V + K EAD+RS++VG
Sbjct: 109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVG 168
Query: 96 NVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESEL 154
NVDY T EE++ HF CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES
Sbjct: 169 NVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLF 228
Query: 155 HGRQLKVLPKRTNVPGM 171
GRQ+KV+PKRTN PG+
Sbjct: 229 RGRQIKVVPKRTNRPGI 245
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 89/139 (64%), Gaps = 8/139 (5%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPANVAAN-------QASKEEADSRS 91
EL+EMKKR +EMEEEA L E+Q +E + +EE DSRS
Sbjct: 43 ELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQEEIDSRS 102
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLN 150
V+VGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEF+ +++ A+ LN
Sbjct: 103 VYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALN 162
Query: 151 ESELHGRQLKVLPKRTNVP 169
+S + RQLK+ PKRTN+P
Sbjct: 163 DSFFNERQLKITPKRTNLP 181
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 19/151 (12%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPANVAANQA---------------- 82
EL ++ R++EMEEEA L+ + + +K +G + P +
Sbjct: 26 ELKAIRMRVREMEEEAERLKGLSGQ-DKSIGVSTRPCMQTTHSKMTAGAYTEGPPQPLSA 84
Query: 83 -SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEI 140
K+E D RSV+VGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E
Sbjct: 85 EEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER 144
Query: 141 DAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
++V A+ ++E+ GR +KVLPKRTN+PG+
Sbjct: 145 NSVDAAVAMDETVFRGRTIKVLPKRTNMPGI 175
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 98/151 (64%), Gaps = 19/151 (12%)
Query: 39 ELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDP------ANVAANQAS--------- 83
EL ++ R++EMEEEA L+ + + +K +G + P + + A + +
Sbjct: 26 ELKAIRMRVREMEEEAERLKGLSGQ-DKSIGVSPRPCMKLIHSKMTAGEYTEGPPRPLSA 84
Query: 84 --KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEI 140
K+E D RSV+VGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E
Sbjct: 85 EEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAER 144
Query: 141 DAVQEALQLNESELHGRQLKVLPKRTNVPGM 171
++V A+ ++E+ GR +KVLPKRTN+PG+
Sbjct: 145 NSVDAAVTMDETVFRGRTIKVLPKRTNMPGI 175
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 90/145 (62%), Gaps = 11/145 (7%)
Query: 38 KELDEMKKRLKEMEEEAAALRE--MQAKVEKEMGAAQ----DPANVAANQAS----KEEA 87
+EL+ +K ++ ME+ R +Q + E+E G A P V + K EA
Sbjct: 85 QELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEA 144
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEA 146
D RSV+VGNVDY + EE++ HF CG V+RVTIL DKF G PKG+AY+EF +VQ A
Sbjct: 145 DHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAA 204
Query: 147 LQLNESELHGRQLKVLPKRTNVPGM 171
++L++S GR +KVLPKRTN PG+
Sbjct: 205 VELDQSLFRGRVIKVLPKRTNFPGI 229
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 15/147 (10%)
Query: 38 KELDEMKKRLKEMEEEAA----------ALREMQAKVEKEMGAAQDPANVAANQASKE-- 85
+EL+ +K +L ME A A E +A+V + + + + + ++ SKE
Sbjct: 81 QELEAIKLKLWAMEHAEAQPEPPCVQRKATEEERAEVRQLL--SPETVDCFFSRTSKENV 138
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQ 144
EAD RSVFVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +V+
Sbjct: 139 EADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVK 198
Query: 145 EALQLNESELHGRQLKVLPKRTNVPGM 171
A+ L+ES GR +KVLPKRTN PG+
Sbjct: 199 AAVGLDESTFRGRVIKVLPKRTNFPGI 225
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 24/137 (17%)
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQ 144
EAD RSV+VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +VQ
Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQ 194
Query: 145 EALQLNESELHGRQLKVLPKRTNVPGMKQY---------------------RPRRFNPYM 183
A++L+ES GR +KVLPKRTN PG+ R R P+
Sbjct: 195 AAVRLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSSSRAAFLQGSLQRKPRLRPHG 254
Query: 184 GYRGRRPYVPPYFYSPY 200
RGR P ++SPY
Sbjct: 255 QSRGRGRASP--WFSPY 269
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 4/124 (3%)
Query: 49 EMEEEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQ 108
E+E E+A L ++Q K+ K + +A A V + ++ D++SVF+GNVD+ T EEV++
Sbjct: 23 EIEAESAILEQIQNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEE 79
Query: 109 HFQSCGTVNRVTILTDKFGQP-KGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167
HF+ CG + R TI DKF + K FAY+EF + +++ AL +N S R + V KRTN
Sbjct: 80 HFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 139
Query: 168 VPGM 171
+PGM
Sbjct: 140 IPGM 143
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 80/124 (64%), Gaps = 4/124 (3%)
Query: 49 EMEEEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQ 108
E+E E+A L+++Q K+ K + +A A V + ++ D++SVF+GNVD+ T EE+++
Sbjct: 17 EIEAESAILQQIQNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEE 73
Query: 109 HFQSCGTVNRVTILTDKFGQP-KGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167
HF+ CG + + TI DKF + K FAY+EF + +++ AL +N S R + V KRTN
Sbjct: 74 HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTN 133
Query: 168 VPGM 171
+PGM
Sbjct: 134 IPGM 137
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEI 140
A + EADSRS+FVGN+ TPE+++ HF+ CG + R+T+L D+ G PKG+ Y+EF
Sbjct: 56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESP 115
Query: 141 DAVQEALQLNESELHGRQLKVLPKRTNVPGMKQY 174
++ALQLN EL G+++ V KRTN+PG ++
Sbjct: 116 AYREKALQLNGGELKGKKIAVSRKRTNIPGFNRH 149
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEA 146
D RSVFVGN+ Y +++HF CG++ V I+ DK G KGF YV F D+V A
Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344
Query: 147 LQLNESELHGRQLKVL 162
L+LN SEL GR+L+V+
Sbjct: 345 LKLNNSELMGRKLRVM 360
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 77 VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI---------LTDKFG 127
+ NQ + + R+VFVGN+ C ++++ F+ G + V L+ K
Sbjct: 172 IQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLA 231
Query: 128 ---------QPKGFAYVEFLEIDAVQEALQLNESEL 154
Q AYV F E A +AL+ N +++
Sbjct: 232 AIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQI 267
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 50 MEEEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQH 109
+EE AA + +Q + + ++A+ AS+ D RSVFVGN+ Y +++H
Sbjct: 248 FKEERAAAKALQRNGAQIAEGFRIRVDLASETASR---DKRSVFVGNLPYRVDESALEEH 304
Query: 110 FQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNV 168
F CG++ V I+ + G +GF YV F DAV AL+LN SEL GR+L+V+ + N
Sbjct: 305 FLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNK 363
Query: 169 PGMKQYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGY 204
+KQ NP + G + F S G +
Sbjct: 364 EKLKQQNS---NPSVKKDGSKSKQRLNFTSKEGKSH 396
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI---------LTDKFG---------QP 129
+ R+VFVGN+ C ++++ F+ G V V L+ K Q
Sbjct: 181 NERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQK 240
Query: 130 KGFAYVEFLEIDAVQEALQLNESEL 154
AYV F E A +ALQ N +++
Sbjct: 241 SINAYVVFKEERAAAKALQRNGAQI 265
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 50 MEEEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQH 109
++E+AA + +Q + + ++A+ AS+ D RSVFVGN+ Y +++H
Sbjct: 254 FKDESAAAKALQRNGAQIAEGFRIRVDLASETASR---DKRSVFVGNLPYKIEDSALEEH 310
Query: 110 FQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNV 168
F CG++ V I+ + G +GF YV F DAV AL+LN SEL GR+L+V+ + N
Sbjct: 311 FLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNK 369
Query: 169 PGMKQ 173
+KQ
Sbjct: 370 EKLKQ 374
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI---------LTDKFG---------QP 129
+ R+VFVGN+ C ++++ F+ G V V LT K Q
Sbjct: 187 NERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQK 246
Query: 130 KGFAYVEFLEIDAVQEALQLNESEL 154
AYV F + A +ALQ N +++
Sbjct: 247 SINAYVVFKDESAAAKALQRNGAQI 271
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+D+ + E + +HF SCG + V I+ D K KGFAYV+F ++ +V +AL
Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318
Query: 149 LNESEL---HGRQLKV 161
LN+ ++ GR+L+V
Sbjct: 319 LNDKKMAVGKGRKLRV 334
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+D+ E + +HF+ CG + V I+ D K KGFAYV+F + +V +AL
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 356
Query: 149 LNESELH----GRQLKV 161
L+E ++H R+L++
Sbjct: 357 LHEKKIHEGKKARKLRI 373
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 8/80 (10%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+D+ E + +HF +CG++ V I+ D K KGFAYV+F E+ +V +AL
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287
Query: 149 LNES-------ELHGRQLKV 161
LNE L R+L+V
Sbjct: 288 LNEKPMISQNEHLKKRKLRV 307
>sp|Q804A9|DAZL_CHICK Deleted in azoospermia-like OS=Gallus gallus GN=DAZL PE=2 SV=1
Length = 289
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLN 150
+VFVG +D E++ +F+ GTV V I+TD+ G KG+ +V FL+ VQ+ ++ +
Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95
Query: 151 ESELHGRQLKVLP---KRTNVPGMKQYRPRRFNP 181
+ +HG++LK+ P K+ N+ Q RP FNP
Sbjct: 96 QISVHGKRLKLGPAIRKQQNLCSYMQPRPLAFNP 129
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
RS+FVGN+D+ E + +HF+ CG + V I+ D K KGFAYV+F ++ +V +AL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 149 LNESELHGRQ 158
LNE + ++
Sbjct: 339 LNEKPMKSQK 348
>sp|Q09100|RNP24_SCHPO RNA-binding protein rnp24 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnp24 PE=4 SV=2
Length = 369
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 69 GAAQDPANV----AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT- 123
G PAN A+ Q+SK+E S +FVGN+D+ T ++++HF G + RV ++T
Sbjct: 204 GRPSKPANTLSKTASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTF 262
Query: 124 DKFGQPKGFAYVEFLEIDAVQEALQL 149
+ G+ KGF +V+F +ID +A++L
Sbjct: 263 EDTGKCKGFGFVDFPDIDTCMKAMEL 288
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 92 VFVGNVDYACTPE--------EVQQHFQSCGTVNRVTILTDKFG------------QPKG 131
++VGN+ + T E E + + N I T++ Q KG
Sbjct: 107 IWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKG 166
Query: 132 FAYVEFLEIDAVQEALQLNESELHGRQLKV 161
FAYV+F DA++ ALQ +E L+GR + +
Sbjct: 167 FAYVDFATEDALKLALQCSEKALNGRNILI 196
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
R VFVGN+ + E + ++F CG+++ V I+ D K KGFAY++F + V +AL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 149 LNESEL-HGRQLKVLPKRTNVP 169
LNE ++ GR L+++ ++ P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 72 QDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKG 131
++P A+NQ + S+++FVGN+ Y E+V+Q FQ G V + T + G +G
Sbjct: 433 EEPKTPASNQ--NQATGSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRG 490
Query: 132 FAYVEFLEIDAVQEALQLNESELHGRQLKV 161
F +VEF +A ++AL+L +L GR +++
Sbjct: 491 FGHVEFATAEAAKKALELAGHDLMGRPVRL 520
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 86 EADSRSVFVGNVDYACTPEEV----QQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEI 140
++ ++F+ D + ++ ++HF SCG + RV+I D + G KG AY++F +
Sbjct: 545 QSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADN 604
Query: 141 DAVQEALQLNESELHGRQLKV 161
++ +A +LN S+L G L V
Sbjct: 605 GSLSKAYELNGSDLGGYSLYV 625
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 60 MQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRV 119
+ K+EK M A D A N K+E DSR++FV N+ Y+ T EE+Q+ F++ +
Sbjct: 300 TEVKIEKAM--AFDKNKTAEN---KKERDSRTLFVKNIPYSTTVEELQEIFENA---KDI 351
Query: 120 TILTDKFGQPKGFAYVEFLEIDAVQEALQLNE-SELHGRQLKV 161
I T K G KG AYVEF D +AL+ + +E+ GR + V
Sbjct: 352 RIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 394
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQE 145
E DS+ + V N+ Y+ T + +++ F+ ++ + G+ KGFA++EF + ++
Sbjct: 411 EGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIEFSSAEDAKD 466
Query: 146 AL-QLNESELHGRQLKV 161
A+ N +E+ GR +++
Sbjct: 467 AMDSCNNTEIEGRSIRL 483
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 62 AKVEKEMGAAQDPANVAANQASKEEADSR--SVFVGNVDYACTPEEVQQHFQSCGTVNRV 119
AK +KEM P + + +K + S S+F+GN++ +E++ + + +
Sbjct: 208 AKRKKEM-----PKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNL 262
Query: 120 TILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKV 161
TI + G K F YV+F + V++AL+L ++ G ++K+
Sbjct: 263 TIQDIRIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKI 304
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEF 137
A S+++FV + T E +++ F G+VN I+TD+ G KGF +V+F
Sbjct: 500 AQSKTLFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDF 548
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 40 LDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDY 99
LD + + ++ ++ ++ E+++ N + + ++ +FVG +
Sbjct: 60 LDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPP 119
Query: 100 ACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQ 158
T EE +Q+F+ G V V I+ D+ +P+GF +V F DAV L +L G+Q
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 179
Query: 159 LKV---LPKRTN 167
++V LPK N
Sbjct: 180 VEVKRALPKDAN 191
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQ 144
++D +FVG + + +++++HF + G V++ ++ DK G+P+GF +V F + +
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 145 EALQ 148
LQ
Sbjct: 62 RVLQ 65
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEALQ 148
R VFVG +D+ E + + F SCG V V I+ D K KGFAYV+F ++++V++AL
Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333
Query: 149 LN--------ESELHGRQLKV 161
LN +S + R+L+V
Sbjct: 334 LNGKGINELSKSTTNKRKLRV 354
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFLEIDAVQEAL 147
S +VFVGN+ + T +++ F CG + + + TD + G+ KGF YV F +ID+ ++ +
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424
Query: 148 QLNESELHGRQLKV 161
++N + GR ++
Sbjct: 425 EMNGHFIAGRPCRL 438
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 67 EMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-K 125
E + + PA + + S++ ++ +VFVG + + + + Q F+ GT+ ++ D +
Sbjct: 242 EPASEERPAKIT--KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQ 299
Query: 126 FGQPKGFAYVEFLEIDAVQEALQLNES-ELHGRQLKV 161
G+ KG+ YV+F +A + A+ N + E+ GR + +
Sbjct: 300 SGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE----IDA 142
A +++V NV+ A T EE+++HF CGT+ ++ D+ G+ KGF +V F IDA
Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDA 360
Query: 143 VQEALQLNESELHGRQLKV 161
V+ + HG+ L V
Sbjct: 361 VK---TFHGQMFHGKPLYV 376
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQ-L 149
+VFV N+ + T +Q F+ G + + T + G+ +G+ +V+F + DA A+Q L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 150 NESELHGRQLKV 161
N + + +++ V
Sbjct: 173 NSTIVADKEIYV 184
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 19/140 (13%)
Query: 75 ANVAANQASKEEADSR--SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF 132
+N AA S+ + DS ++FVG +D T EE++Q F G V V I KG
Sbjct: 278 SNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAG-----KGC 332
Query: 133 AYVEFLEIDAVQEALQLNESELHGRQ-LKVLPKRTNVPGMKQYRPRRFNPYM-GYRGRRP 190
+V+F + + QEA+Q + G+Q +++ R+ P KQ R + + GY GR+
Sbjct: 333 GFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRS--PANKQMRTDSGSQWNGGYNGRQN 390
Query: 191 YVPPYFYSPYGYGYEGSEVQ 210
Y GYGY S+ Q
Sbjct: 391 YG--------GYGYGASQNQ 402
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 78 AANQASKEE------ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPK 130
A N S++E ++++ +F+ N+ Y+C ++++ F G + +V + DK PK
Sbjct: 305 AENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPK 364
Query: 131 GFAYVEFLEI-DAVQEALQLNESELHGRQLKVLPKR 165
GFAY++F + DAV+ L+L+ GR L VLP +
Sbjct: 365 GFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQP-KGFAYVEFLEIDAVQEALQ-L 149
+ + N+ + T ++VQ + G + V + KF + +GFA+ EF+ A++ L
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRV-PKKFDRSARGFAFAEFVTAREAANAMRAL 781
Query: 150 NESELHGRQL 159
+ L GR L
Sbjct: 782 KNTHLLGRHL 791
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 73 DPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF 132
+P A+NQ+ E S ++F+GN+ + ++V++ FQ G V V + T + G +GF
Sbjct: 296 EPKTPASNQSQGTE--SATLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGF 353
Query: 133 AYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK-QYRPRRFNPYMGYRGR-RP 190
+V+F + ++AL+L+ +L GR P R ++ + Y P N ++ + R
Sbjct: 354 GHVQFASSEEAKKALELHGCDLDGR-----PVRLDLAHERGAYTPHSRNDTGSFQKQNRG 408
Query: 191 YVPPYFYSPYGYGYEGSEVQKANEVHALLLADCAPV 226
F + E S+++++ E H ADC +
Sbjct: 409 SSQSIFVKGFDSSLEESKIRESLEGH---FADCGEI 441
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 89 SRSVFVGNVDYACTPEEVQQ----HFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAV 143
S+S+FV D + ++++ HF CG + RV++ D+ G KG AY++F + +
Sbjct: 410 SQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASF 469
Query: 144 QEALQLNESELHGRQLKV 161
+AL+L+ S+L G L V
Sbjct: 470 SKALELSGSDLGGYNLYV 487
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 30/196 (15%)
Query: 7 EVYGGEIPDVEGDMDAHNTDVDMSAADDDA--------VKELDEMKKRLKEM-EEEAAAL 57
+V G + + E D H +++ A + D+ V +LD + L+ M E+E
Sbjct: 19 DVAGSAVLETETSQDIHQLEIEKDAGETDSDAGSIAMNVHQLDTAGEPLQSMNEDEVDPN 78
Query: 58 REMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN 117
E A +KE +A + + N +FV + +E+QQ F GTV
Sbjct: 79 NESTALDKKEPQSAPEGSENLGND----------LFVSGIASRMQEDELQQIFSKFGTVT 128
Query: 118 RVTILTDKFGQ-PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTNVPGMKQYR 175
V I+ + + +GF ++ F ++ A+ LN E +GR L NV K+ R
Sbjct: 129 HVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVL-------NVQKAKRSR 181
Query: 176 PRRFNP--YMGYRGRR 189
P P YMGY RR
Sbjct: 182 PHSPTPGKYMGYDRRR 197
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQ-LNESELHGRQLKV 161
+V A+ LN +L+GR +K+
Sbjct: 62 SVPYAMNLLNGIKLYGRPIKI 82
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEID 141
S+EE D R+VFV + T E+ F+ G V I+ DK G+ KG AYVEF D
Sbjct: 233 SEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHED 292
Query: 142 AVQEALQLNESELHGRQLKVLP 163
+VQ A+ L+ G++L LP
Sbjct: 293 SVQAAIALS-----GKRLLGLP 309
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 94 VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNES 152
V N+ + T E+V+ F+ G + V + D + KGF Y+++ + + AL ++N
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGF 403
Query: 153 ELHGRQLKV 161
+L GR ++V
Sbjct: 404 DLAGRNMRV 412
>sp|P57052|RBM11_HUMAN Splicing regulator RBM11 OS=Homo sapiens GN=RBM11 PE=1 SV=1
Length = 281
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDA 142
++EEAD R+VFVGN++ E + + F G + +VTI D+ G+PK F +V F ++
Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62
Query: 143 VQEALQ-LNESELHGRQLKV 161
V A+ LN L+GR + V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>sp|Q80YT9|RBM11_MOUSE Splicing regulator RBM11 OS=Mus musculus GN=Rbm11 PE=1 SV=1
Length = 238
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDA 142
++EEAD R+VFVGN++ E + + F G + +VT+ D+ G+PK F +V F ++
Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDRDGKPKSFGFVCFKHPES 62
Query: 143 VQEALQ-LNESELHGRQLKV 161
V A+ LN L+GR + V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEAL- 147
+++FV ++Y + ++++ F+S G + RV ++TD+ +PKG+A++E++ ++ A
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 148 QLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMG 184
Q + ++ GR++ V +R + +RPRR +G
Sbjct: 198 QADGQKIDGRRVLVDVERGRT--VPNWRPRRLGGGLG 232
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G+V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ- 148
S++VGN+ Y+ T +++ + F G+V RV + TD+ G+ +GF +VE A A+Q
Sbjct: 2 SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQA 61
Query: 149 LNESELHGRQLKVLPKR 165
L+ +E GR LKV R
Sbjct: 62 LDGAEWMGRVLKVNKAR 78
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL 147
S +FVG + Y+ +++ F G V I+ D+ G+ +GFA+V F + A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 148 QLNESELHGRQLKV 161
QL+ +LHGR+++V
Sbjct: 93 QLDGQDLHGRRIRV 106
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEID 141
A+ EAD R++FVGN++ T E + + F G V +V I DK G+PK FA+V F
Sbjct: 3 AAAAEAD-RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEV 61
Query: 142 AVQEALQ-LNESELHGRQLKV 161
+V A+ LN +L GR +K+
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKI 82
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ 148
RSVFVGN+ Y T E+++ F G V ++ D+ G+PKG+ + E+ + + A++
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 149 -LNESELHGRQLKV 161
LN E GR L+V
Sbjct: 76 NLNGREFSGRALRV 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,514,910
Number of Sequences: 539616
Number of extensions: 3906344
Number of successful extensions: 20213
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 562
Number of HSP's that attempted gapping in prelim test: 18830
Number of HSP's gapped (non-prelim): 1818
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)