Query 041633
Match_columns 237
No_of_seqs 255 out of 2760
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.1E-20 2.3E-25 146.5 15.5 83 87-169 32-116 (144)
2 KOG0113 U1 small nuclear ribon 99.7 1E-16 2.2E-21 133.4 14.9 94 87-182 99-194 (335)
3 KOG0105 Alternative splicing f 99.7 1.4E-17 3E-22 130.1 8.5 134 88-236 5-147 (241)
4 TIGR01659 sex-lethal sex-letha 99.7 1.4E-16 3E-21 139.9 14.8 80 88-167 192-275 (346)
5 KOG0121 Nuclear cap-binding pr 99.7 3.3E-17 7.1E-22 120.7 8.0 79 88-166 35-115 (153)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.6E-16 3.5E-21 140.1 12.5 80 88-167 268-349 (352)
7 PF00076 RRM_1: RNA recognitio 99.7 1.6E-16 3.6E-21 107.2 9.7 69 92-160 1-70 (70)
8 TIGR01645 half-pint poly-U bin 99.7 6.5E-16 1.4E-20 143.1 13.8 80 87-166 105-186 (612)
9 KOG0149 Predicted RNA-binding 99.7 1.2E-16 2.6E-21 129.2 7.2 78 88-165 11-89 (247)
10 TIGR01659 sex-lethal sex-letha 99.7 3.6E-16 7.7E-21 137.4 10.8 82 85-166 103-186 (346)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.4E-16 9.5E-21 137.3 11.2 79 89-167 3-83 (352)
12 KOG0107 Alternative splicing f 99.7 1.4E-15 2.9E-20 117.9 11.5 77 89-169 10-87 (195)
13 PLN03120 nucleic acid binding 99.6 2.3E-15 4.9E-20 125.3 11.3 76 89-166 4-79 (260)
14 PF14259 RRM_6: RNA recognitio 99.6 5E-15 1.1E-19 100.4 10.0 69 92-160 1-70 (70)
15 KOG0122 Translation initiation 99.6 6E-15 1.3E-19 119.9 9.9 81 87-167 187-269 (270)
16 TIGR01648 hnRNP-R-Q heterogene 99.6 2E-14 4.3E-19 133.0 14.6 73 88-167 232-307 (578)
17 TIGR01645 half-pint poly-U bin 99.6 1.1E-14 2.4E-19 135.0 11.6 80 89-168 204-285 (612)
18 KOG0125 Ataxin 2-binding prote 99.6 7.3E-15 1.6E-19 123.8 8.9 79 88-167 95-174 (376)
19 KOG0148 Apoptosis-promoting RN 99.6 2.4E-14 5.3E-19 117.9 11.2 78 85-167 160-238 (321)
20 PLN03121 nucleic acid binding 99.6 2.6E-14 5.7E-19 117.3 10.6 77 88-166 4-80 (243)
21 KOG4207 Predicted splicing fac 99.6 2.3E-14 5E-19 113.9 9.5 80 87-166 11-92 (256)
22 KOG0130 RNA-binding protein RB 99.6 1.2E-14 2.6E-19 108.2 7.1 85 87-171 70-156 (170)
23 KOG0127 Nucleolar protein fibr 99.5 1.5E-14 3.2E-19 129.0 9.0 83 85-167 288-378 (678)
24 PLN03213 repressor of silencin 99.5 2E-14 4.3E-19 127.0 9.6 78 87-167 8-88 (759)
25 TIGR01622 SF-CC1 splicing fact 99.5 5.6E-14 1.2E-18 128.2 11.4 80 86-165 86-166 (457)
26 KOG0111 Cyclophilin-type pepti 99.5 9.3E-15 2E-19 117.2 5.3 82 87-168 8-91 (298)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 5.6E-14 1.2E-18 130.0 11.2 78 88-165 57-136 (578)
28 KOG0126 Predicted RNA-binding 99.5 5.3E-15 1.2E-19 115.3 3.5 82 85-166 31-114 (219)
29 TIGR01628 PABP-1234 polyadenyl 99.5 7.2E-14 1.6E-18 130.8 11.5 76 91-166 2-79 (562)
30 TIGR01628 PABP-1234 polyadenyl 99.5 7.7E-14 1.7E-18 130.6 11.1 80 87-166 283-363 (562)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.4E-13 3.1E-18 127.1 12.6 80 88-167 294-375 (509)
32 smart00362 RRM_2 RNA recogniti 99.5 1.4E-13 3.1E-18 92.1 9.3 71 91-162 1-72 (72)
33 TIGR01622 SF-CC1 splicing fact 99.5 9.6E-14 2.1E-18 126.7 11.1 78 89-166 186-265 (457)
34 KOG0117 Heterogeneous nuclear 99.5 4.4E-14 9.6E-19 123.3 7.3 80 87-166 81-163 (506)
35 KOG4209 Splicing factor RNPS1, 99.5 2.4E-13 5.3E-18 112.7 10.1 155 37-191 46-205 (231)
36 KOG0148 Apoptosis-promoting RN 99.5 2.3E-13 4.9E-18 112.3 8.3 80 89-168 62-143 (321)
37 COG0724 RNA-binding proteins ( 99.4 5E-13 1.1E-17 111.8 10.2 77 89-165 115-193 (306)
38 smart00360 RRM RNA recognition 99.4 5.6E-13 1.2E-17 88.8 8.3 69 94-162 1-71 (71)
39 cd00590 RRM RRM (RNA recogniti 99.4 1.4E-12 3E-17 87.7 10.1 73 91-163 1-74 (74)
40 KOG0117 Heterogeneous nuclear 99.4 9.3E-13 2E-17 115.2 10.8 73 89-168 259-332 (506)
41 KOG0114 Predicted RNA-binding 99.4 8.4E-13 1.8E-17 94.1 8.4 77 88-166 17-94 (124)
42 KOG0108 mRNA cleavage and poly 99.4 7E-13 1.5E-17 118.6 8.3 79 90-168 19-99 (435)
43 KOG0145 RNA-binding protein EL 99.4 1.2E-12 2.5E-17 107.6 8.5 82 86-167 38-121 (360)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.2E-12 4.8E-17 118.6 11.2 77 87-167 273-351 (481)
45 KOG0124 Polypyrimidine tract-b 99.4 5.2E-13 1.1E-17 114.2 6.3 79 87-165 111-191 (544)
46 KOG0131 Splicing factor 3b, su 99.4 6.8E-13 1.5E-17 103.6 5.6 78 88-165 8-87 (203)
47 KOG0116 RasGAP SH3 binding pro 99.4 5.7E-12 1.2E-16 112.2 12.1 85 88-172 287-372 (419)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.6E-12 5.6E-17 118.1 10.3 73 88-165 1-76 (481)
49 KOG0144 RNA-binding protein CU 99.4 1.4E-12 2.9E-17 113.7 7.8 84 88-171 123-210 (510)
50 KOG0144 RNA-binding protein CU 99.4 1.2E-12 2.6E-17 114.1 7.3 83 85-167 30-117 (510)
51 KOG0415 Predicted peptidyl pro 99.4 4.9E-12 1.1E-16 107.9 10.5 82 86-167 236-319 (479)
52 KOG4212 RNA-binding protein hn 99.3 5.9E-12 1.3E-16 110.0 10.6 79 88-166 43-123 (608)
53 KOG0127 Nucleolar protein fibr 99.3 5.5E-12 1.2E-16 112.8 9.0 80 87-166 115-195 (678)
54 PF13893 RRM_5: RNA recognitio 99.3 2.8E-11 6E-16 78.4 7.6 55 106-164 1-56 (56)
55 smart00361 RRM_1 RNA recogniti 99.3 3.5E-11 7.6E-16 81.7 8.3 59 103-161 2-69 (70)
56 KOG0109 RNA-binding protein LA 99.2 1.1E-11 2.4E-16 103.3 5.8 71 90-167 3-74 (346)
57 TIGR01642 U2AF_lg U2 snRNP aux 99.2 3.2E-11 6.9E-16 111.5 9.3 76 85-165 171-258 (509)
58 KOG0147 Transcriptional coacti 99.2 1.9E-11 4.1E-16 109.5 5.9 78 87-164 276-355 (549)
59 KOG0145 RNA-binding protein EL 99.2 1.6E-10 3.5E-15 95.1 9.7 79 89-167 278-358 (360)
60 KOG0153 Predicted RNA-binding 99.1 1.3E-10 2.7E-15 99.1 8.0 79 83-166 222-302 (377)
61 KOG0146 RNA-binding protein ET 99.1 6.5E-11 1.4E-15 97.8 5.7 86 83-168 279-366 (371)
62 KOG4205 RNA-binding protein mu 99.1 6.7E-11 1.5E-15 101.8 5.4 81 88-168 5-86 (311)
63 KOG4206 Spliceosomal protein s 99.1 2.4E-10 5.3E-15 92.4 8.2 78 88-167 8-90 (221)
64 KOG4208 Nucleolar RNA-binding 99.1 2.1E-10 4.6E-15 91.5 7.0 80 87-166 47-129 (214)
65 KOG0123 Polyadenylate-binding 99.1 3.1E-10 6.8E-15 100.6 8.7 74 91-166 78-152 (369)
66 KOG0146 RNA-binding protein ET 99.1 2.1E-10 4.6E-15 94.7 6.7 81 87-167 17-101 (371)
67 KOG0131 Splicing factor 3b, su 99.1 2.9E-10 6.4E-15 89.0 6.3 81 86-166 93-176 (203)
68 KOG0132 RNA polymerase II C-te 99.1 3E-10 6.5E-15 105.4 7.3 75 88-167 420-495 (894)
69 KOG0109 RNA-binding protein LA 99.0 2.2E-10 4.8E-15 95.6 5.3 75 86-167 75-150 (346)
70 KOG4205 RNA-binding protein mu 99.0 7.8E-10 1.7E-14 95.3 8.3 79 89-167 97-176 (311)
71 KOG4661 Hsp27-ERE-TATA-binding 99.0 7.7E-10 1.7E-14 99.7 8.2 83 89-171 405-489 (940)
72 KOG0151 Predicted splicing reg 99.0 4.3E-09 9.4E-14 97.0 10.9 82 86-167 171-257 (877)
73 KOG0110 RNA-binding protein (R 99.0 5.2E-10 1.1E-14 103.0 4.8 79 89-167 613-693 (725)
74 KOG0110 RNA-binding protein (R 99.0 1.7E-09 3.7E-14 99.6 7.9 75 91-165 517-596 (725)
75 KOG0124 Polypyrimidine tract-b 99.0 1.8E-09 3.8E-14 92.8 7.2 81 88-168 209-291 (544)
76 KOG0123 Polyadenylate-binding 98.9 3.1E-09 6.8E-14 94.2 8.1 72 90-166 2-74 (369)
77 KOG0533 RRM motif-containing p 98.9 2.9E-08 6.3E-13 82.6 11.8 80 87-166 81-161 (243)
78 KOG4212 RNA-binding protein hn 98.9 4.3E-09 9.3E-14 92.3 6.8 74 87-164 534-608 (608)
79 KOG1548 Transcription elongati 98.8 1.1E-08 2.4E-13 87.3 8.0 81 87-167 132-221 (382)
80 KOG1457 RNA binding protein (c 98.8 5.7E-08 1.2E-12 78.6 10.0 81 88-168 33-119 (284)
81 KOG0106 Alternative splicing f 98.8 1.2E-08 2.6E-13 83.2 5.7 71 90-167 2-73 (216)
82 KOG0226 RNA-binding proteins [ 98.7 1.2E-08 2.7E-13 83.8 4.2 80 85-164 186-267 (290)
83 KOG4660 Protein Mei2, essentia 98.6 2.9E-08 6.3E-13 89.5 4.9 73 84-160 70-143 (549)
84 KOG4454 RNA binding protein (R 98.6 1.4E-08 3.1E-13 81.8 1.8 77 89-166 9-86 (267)
85 KOG4211 Splicing factor hnRNP- 98.5 4.8E-07 1E-11 80.7 9.5 78 88-167 9-86 (510)
86 KOG1995 Conserved Zn-finger pr 98.5 4.5E-07 9.7E-12 78.1 8.0 82 86-167 63-154 (351)
87 KOG4211 Splicing factor hnRNP- 98.5 1.8E-06 3.8E-11 77.2 10.8 78 87-164 101-179 (510)
88 PF04059 RRM_2: RNA recognitio 98.4 2.9E-06 6.3E-11 61.0 9.4 77 90-166 2-86 (97)
89 KOG0147 Transcriptional coacti 98.4 1.4E-07 3E-12 85.0 2.0 80 85-164 175-255 (549)
90 KOG4210 Nuclear localization s 98.3 7.3E-07 1.6E-11 76.5 4.6 81 88-168 183-265 (285)
91 KOG4849 mRNA cleavage factor I 98.3 2E-06 4.4E-11 73.8 7.0 75 89-163 80-158 (498)
92 KOG1190 Polypyrimidine tract-b 98.2 5.3E-06 1.2E-10 72.7 8.2 75 89-167 297-373 (492)
93 KOG0120 Splicing factor U2AF, 98.1 1.7E-06 3.6E-11 78.7 3.6 79 88-166 288-368 (500)
94 KOG4206 Spliceosomal protein s 98.1 1.7E-05 3.6E-10 64.6 7.7 76 86-165 143-220 (221)
95 PF11608 Limkain-b1: Limkain b 98.0 2.2E-05 4.8E-10 54.3 6.2 67 90-165 3-75 (90)
96 COG5175 MOT2 Transcriptional r 98.0 4E-05 8.7E-10 65.8 8.3 78 89-166 114-202 (480)
97 KOG1855 Predicted RNA-binding 98.0 5.9E-05 1.3E-09 66.6 9.5 68 83-150 225-306 (484)
98 KOG0106 Alternative splicing f 97.9 7.2E-06 1.6E-10 67.0 2.8 71 87-164 97-168 (216)
99 KOG1457 RNA binding protein (c 97.8 2E-05 4.4E-10 64.0 4.1 64 89-155 210-274 (284)
100 KOG3152 TBP-binding protein, a 97.8 3.8E-05 8.3E-10 63.6 5.2 71 88-158 73-157 (278)
101 KOG4307 RNA binding protein RB 97.7 0.00011 2.4E-09 68.5 7.7 77 87-163 864-943 (944)
102 PF08777 RRM_3: RNA binding mo 97.7 9.8E-05 2.1E-09 54.0 5.7 69 90-163 2-76 (105)
103 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 4E-09 45.8 5.2 52 90-147 2-53 (53)
104 KOG1365 RNA-binding protein Fu 97.5 0.00058 1.3E-08 59.8 9.1 78 89-166 280-361 (508)
105 KOG1456 Heterogeneous nuclear 97.5 0.002 4.4E-08 56.3 11.4 76 88-167 119-199 (494)
106 KOG0129 Predicted RNA-binding 97.4 0.0005 1.1E-08 62.2 7.4 81 83-164 364-451 (520)
107 KOG2314 Translation initiation 97.4 0.00063 1.4E-08 62.2 7.8 75 89-163 58-140 (698)
108 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00094 2E-08 48.3 7.2 76 89-165 6-90 (100)
109 KOG1456 Heterogeneous nuclear 97.3 0.0017 3.6E-08 56.8 8.7 77 86-166 284-362 (494)
110 KOG1365 RNA-binding protein Fu 97.3 0.00023 5E-09 62.2 3.4 75 90-164 162-240 (508)
111 PF08952 DUF1866: Domain of un 97.2 0.0021 4.6E-08 49.4 7.9 72 88-166 26-106 (146)
112 KOG0120 Splicing factor U2AF, 97.2 0.0012 2.6E-08 60.4 7.3 62 105-166 425-491 (500)
113 KOG0129 Predicted RNA-binding 97.1 0.00095 2.1E-08 60.4 6.0 61 86-147 256-323 (520)
114 KOG1190 Polypyrimidine tract-b 97.1 0.0018 3.9E-08 57.2 6.8 77 87-166 412-490 (492)
115 KOG0128 RNA-binding protein SA 97.0 0.00078 1.7E-08 64.2 4.0 78 89-166 736-814 (881)
116 KOG4676 Splicing factor, argin 96.9 0.0012 2.6E-08 57.9 4.8 76 90-165 8-87 (479)
117 KOG0105 Alternative splicing f 96.8 0.017 3.7E-07 46.0 9.7 61 89-155 115-176 (241)
118 KOG1548 Transcription elongati 96.8 0.006 1.3E-07 52.8 7.7 77 87-166 263-351 (382)
119 KOG0112 Large RNA-binding prot 96.6 0.0022 4.8E-08 61.6 4.4 76 86-166 452-530 (975)
120 KOG2202 U2 snRNP splicing fact 96.6 0.00092 2E-08 55.6 1.6 61 104-164 83-145 (260)
121 KOG0115 RNA-binding protein p5 96.5 0.0066 1.4E-07 50.6 6.1 77 90-166 32-113 (275)
122 KOG2416 Acinus (induces apopto 96.5 0.0025 5.3E-08 58.8 3.7 77 85-166 440-521 (718)
123 KOG0128 RNA-binding protein SA 96.2 0.00025 5.5E-09 67.5 -4.4 67 90-156 668-735 (881)
124 KOG4307 RNA binding protein RB 96.2 0.0029 6.2E-08 59.4 2.3 77 88-164 433-511 (944)
125 PF10309 DUF2414: Protein of u 96.2 0.038 8.3E-07 36.2 6.9 54 89-149 5-62 (62)
126 KOG0112 Large RNA-binding prot 95.9 0.0023 5E-08 61.5 0.4 80 85-164 368-448 (975)
127 PF15023 DUF4523: Protein of u 95.9 0.044 9.6E-07 41.9 7.0 73 85-164 82-159 (166)
128 KOG1996 mRNA splicing factor [ 95.7 0.036 7.9E-07 47.2 6.7 61 104-164 301-364 (378)
129 PF08675 RNA_bind: RNA binding 95.4 0.1 2.2E-06 36.3 6.7 53 90-150 10-63 (87)
130 KOG2135 Proteins containing th 95.2 0.011 2.4E-07 53.2 2.1 73 89-166 372-445 (526)
131 KOG4483 Uncharacterized conser 94.8 0.19 4E-06 44.7 8.3 56 88-149 390-446 (528)
132 KOG2068 MOT2 transcription fac 94.7 0.019 4.2E-07 49.7 2.2 78 89-166 77-162 (327)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.072 1.6E-06 42.6 5.2 77 88-164 6-95 (176)
134 KOG2193 IGF-II mRNA-binding pr 94.5 0.044 9.6E-07 48.9 3.8 71 90-166 2-75 (584)
135 PF07576 BRAP2: BRCA1-associat 94.3 0.64 1.4E-05 34.2 9.1 66 90-156 13-81 (110)
136 PF04847 Calcipressin: Calcipr 93.9 0.18 4E-06 40.5 6.1 61 102-167 8-71 (184)
137 KOG2253 U1 snRNP complex, subu 93.7 0.046 1E-06 51.2 2.5 75 81-163 32-107 (668)
138 PRK11634 ATP-dependent RNA hel 92.8 1.7 3.7E-05 41.7 11.6 68 91-167 488-563 (629)
139 KOG4285 Mitotic phosphoprotein 92.6 0.41 8.9E-06 41.1 6.4 68 91-164 199-267 (350)
140 PF03880 DbpA: DbpA RNA bindin 91.6 1.1 2.3E-05 30.3 6.5 58 99-164 11-74 (74)
141 KOG4574 RNA-binding protein (c 91.5 0.13 2.8E-06 49.7 2.3 72 91-167 300-374 (1007)
142 PF11767 SET_assoc: Histone ly 91.3 1.4 3E-05 29.3 6.6 54 100-161 11-65 (66)
143 KOG4210 Nuclear localization s 91.1 0.15 3.2E-06 44.0 2.3 77 88-164 87-165 (285)
144 KOG4676 Splicing factor, argin 91.1 0.022 4.8E-07 50.2 -2.7 77 80-159 142-218 (479)
145 KOG4660 Protein Mei2, essentia 90.1 0.53 1.1E-05 43.5 4.9 79 88-166 387-472 (549)
146 KOG0804 Cytoplasmic Zn-finger 89.9 1.5 3.3E-05 39.7 7.4 67 89-156 74-142 (493)
147 KOG2591 c-Mpl binding protein, 89.3 0.72 1.6E-05 42.8 5.1 69 88-162 174-247 (684)
148 KOG2318 Uncharacterized conser 89.0 1.8 4E-05 40.4 7.5 79 86-164 171-305 (650)
149 KOG2193 IGF-II mRNA-binding pr 82.7 0.13 2.8E-06 46.0 -2.9 74 89-164 80-154 (584)
150 KOG4410 5-formyltetrahydrofola 82.2 1.5 3.3E-05 37.4 3.3 46 90-140 331-377 (396)
151 KOG4454 RNA binding protein (R 77.2 0.52 1.1E-05 38.7 -0.9 66 88-153 79-149 (267)
152 PF04931 DNA_pol_phi: DNA poly 73.0 3.2 6.9E-05 41.0 3.1 7 106-112 741-747 (784)
153 PF15513 DUF4651: Domain of un 71.6 10 0.00023 24.7 4.2 20 104-123 9-28 (62)
154 PF03468 XS: XS domain; Inter 70.8 9.9 0.00021 28.1 4.6 48 102-151 30-78 (116)
155 PF10567 Nab6_mRNP_bdg: RNA-re 70.2 7 0.00015 33.6 4.1 77 88-164 14-105 (309)
156 KOG4019 Calcineurin-mediated s 70.0 5 0.00011 32.1 3.0 74 90-168 11-91 (193)
157 KOG2295 C2H2 Zn-finger protein 67.9 1.3 2.9E-05 41.0 -0.7 70 89-158 231-302 (648)
158 KOG1999 RNA polymerase II tran 62.4 77 0.0017 31.9 9.9 28 128-155 208-236 (1024)
159 KOG4213 RNA-binding protein La 56.2 18 0.0004 28.9 3.8 59 88-150 110-170 (205)
160 PF07530 PRE_C2HC: Associated 54.7 22 0.00048 23.6 3.6 61 104-166 2-64 (68)
161 PF04889 Cwf_Cwc_15: Cwf15/Cwc 53.7 78 0.0017 26.7 7.5 11 40-50 148-158 (244)
162 KOG2891 Surface glycoprotein [ 53.6 14 0.00029 31.7 2.9 34 89-122 149-194 (445)
163 PRK14548 50S ribosomal protein 52.0 66 0.0014 22.4 5.7 55 91-147 22-78 (84)
164 KOG0156 Cytochrome P450 CYP2 s 45.8 38 0.00083 31.6 4.9 59 93-159 36-97 (489)
165 COG5638 Uncharacterized conser 44.1 75 0.0016 28.9 6.1 38 86-123 143-185 (622)
166 COG0724 RNA-binding proteins ( 43.5 32 0.00069 27.8 3.7 39 87-125 223-261 (306)
167 PF09707 Cas_Cas2CT1978: CRISP 43.0 47 0.001 23.2 3.9 48 89-138 25-72 (86)
168 smart00596 PRE_C2HC PRE_C2HC d 42.9 43 0.00094 22.4 3.4 60 104-165 2-63 (69)
169 COG5193 LHP1 La protein, small 38.3 15 0.00032 33.1 0.9 59 89-147 174-243 (438)
170 PF07292 NID: Nmi/IFP 35 domai 36.1 46 0.00099 23.4 2.9 31 133-163 1-33 (88)
171 KOG4365 Uncharacterized conser 32.6 10 0.00022 34.5 -0.9 75 90-165 4-80 (572)
172 KOG1295 Nonsense-mediated deca 29.8 67 0.0015 28.8 3.6 66 89-154 7-77 (376)
173 KOG4008 rRNA processing protei 28.9 49 0.0011 27.7 2.4 33 87-119 38-70 (261)
174 PRK11558 putative ssRNA endonu 27.6 1.1E+02 0.0023 22.0 3.7 50 89-140 27-76 (97)
175 KOG3973 Uncharacterized conser 26.8 1.2E+02 0.0025 27.1 4.5 8 91-98 296-303 (465)
176 PF14893 PNMA: PNMA 23.4 77 0.0017 28.0 2.8 52 88-139 17-71 (331)
177 COG0030 KsgA Dimethyladenosine 23.4 1.3E+02 0.0028 25.6 4.1 34 89-122 95-128 (259)
178 KOG3228 Uncharacterized conser 22.7 3E+02 0.0065 22.4 5.7 14 37-50 125-138 (226)
179 PF02714 DUF221: Domain of unk 22.4 88 0.0019 27.0 3.0 31 133-165 1-32 (325)
180 PF05918 API5: Apoptosis inhib 22.2 29 0.00064 32.8 0.0 15 39-53 375-389 (556)
181 PF03439 Spt5-NGN: Early trans 20.5 1.9E+02 0.0042 19.7 3.9 34 115-152 33-67 (84)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.1e-20 Score=146.52 Aligned_cols=83 Identities=24% Similarity=0.550 Sum_probs=77.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+.+|+++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|+.|| .|+++.|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 347799999999999999999999999999999999998 7999999999999999999999 79999999999999999
Q ss_pred CCCCC
Q 041633 165 RTNVP 169 (237)
Q Consensus 165 ~~~~~ 169 (237)
..++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1e-16 Score=133.42 Aligned_cols=94 Identities=23% Similarity=0.538 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
-+.+||||+-|+.++++..|+..|+.||+|+.|+|+.++ ||+++|||||+|....+..+|. ..+|..|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 568999999999999999999999999999999999998 9999999999999999999999 79999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 041633 165 RTNVPGMKQYRPRRFNPY 182 (237)
Q Consensus 165 ~~~~~~~~~~~~r~~~~~ 182 (237)
+.+. ...|.+|+-|++
T Consensus 179 RgRT--vkgW~PRRLGGG 194 (335)
T KOG0113|consen 179 RGRT--VKGWLPRRLGGG 194 (335)
T ss_pred cccc--ccccccccccCC
Confidence 8764 335556664433
No 3
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.4e-17 Score=130.08 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=100.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||.+|.+.+|+.+|.+||.|..|.|...+ ....||||+|+++.+|+.|| .-+|..+.|.+|+|.+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 46899999999999999999999999999999874432 34689999999999999999 8999999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhcCCCCCCC--------CCCccCCC
Q 041633 167 NVPGMKQYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGYEGSEVQKANEVHALLLADCAPVED--------GDICGSSI 236 (237)
Q Consensus 167 ~~~~~~~~~~r~~~~~~g~~~~~~~~~~~~~~~~g~g~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 236 (237)
-. ..+.+.+.+.|.+. ++++++..+++-..++.|.+....|....+|+| +|.|...|
T Consensus 83 gr-----~s~~~~G~y~gggr--------gGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv 147 (241)
T KOG0105|consen 83 GR-----SSSDRRGSYSGGGR--------GGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADV 147 (241)
T ss_pred CC-----cccccccccCCCCC--------CCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeee
Confidence 32 11111111111100 122233445556667888888888888899988 78887654
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=1.4e-16 Score=139.94 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCC--eeeEEEe
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHG--RQLKVLP 163 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g--~~i~V~~ 163 (237)
..++|||+|||+.+|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|++|| .||++.|.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998 8999999999999999999999 899998865 7899999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 9754
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3.3e-17 Score=120.72 Aligned_cols=79 Identities=28% Similarity=0.562 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+++||||||++.+++++|-++|+++|.|..|.+-.|+ +..+.|||||+|.+.++|..|| -++++.|..+.|+|.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 47899999999999999999999999999999999999 6889999999999999999999 799999999999999985
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1.6e-16 Score=140.10 Aligned_cols=80 Identities=29% Similarity=0.361 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+++|||+|||+.+++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+|| .|||..|+||.|+|.++.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999 8999999999999999999999 899999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
++
T Consensus 348 ~~ 349 (352)
T TIGR01661 348 NK 349 (352)
T ss_pred CC
Confidence 64
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=1.6e-16 Score=107.20 Aligned_cols=69 Identities=30% Similarity=0.681 Sum_probs=66.2
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 92 ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
|||+|||+++|+++|+.+|++||.|..+.++.+.+++++++|||+|.+.++|..|+ .|++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999998877899999999999999999999 7999999999986
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=6.5e-16 Score=143.14 Aligned_cols=80 Identities=31% Similarity=0.507 Sum_probs=75.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+.+++++|+.+|.+||.|.+|+|+.++ +++++|||||+|.+.++|..|+ .|||+.|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 356899999999999999999999999999999999998 8999999999999999999999 89999999999999876
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 9
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.2e-16 Score=129.20 Aligned_cols=78 Identities=23% Similarity=0.464 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
.-++||||+|+|.++.+.|+++|++||+|+...|+.|+ +|++|||+||+|.+.++|.+|++-..-.|+||+..|+.|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 35789999999999999999999999999999999999 8999999999999999999999777789999999999873
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=3.6e-16 Score=137.39 Aligned_cols=82 Identities=26% Similarity=0.388 Sum_probs=76.8
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.....++|||+|||+++|+++|+++|+.||.|+.|+|+.++ +++++|||||+|.+.++|.+|| .|+++.|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467899999999999999999999999999999999997 7999999999999999999999 899999999999999
Q ss_pred eCCC
Q 041633 163 PKRT 166 (237)
Q Consensus 163 ~a~~ 166 (237)
++++
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8754
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=4.4e-16 Score=137.31 Aligned_cols=79 Identities=25% Similarity=0.477 Sum_probs=75.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..+|||+|||+.+++++|+.+|++||+|.+|+|++++ +|+++|||||+|.+.++|.+|| .||++.|.|+.|+|.++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5799999999999999999999999999999999998 7999999999999999999999 8999999999999999865
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 83 ~ 83 (352)
T TIGR01661 83 S 83 (352)
T ss_pred c
Confidence 3
No 12
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.4e-15 Score=117.93 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=71.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~ 167 (237)
.++||||||+..+++.+|...|..||+|..|+|...+ .|||||+|.++.+|+.|+ .|+|..|.|..|+|..+...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 6899999999999999999999999999999998754 899999999999999999 89999999999999999765
Q ss_pred CC
Q 041633 168 VP 169 (237)
Q Consensus 168 ~~ 169 (237)
+.
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 43
No 13
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.3e-15 Score=125.28 Aligned_cols=76 Identities=22% Similarity=0.427 Sum_probs=71.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
.++|||+|||+.+|+++|++||+.||.|.+|.|+.++ ..+|||||+|.++++|..||.|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999999876 357999999999999999999999999999999999864
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=5e-15 Score=100.44 Aligned_cols=69 Identities=36% Similarity=0.685 Sum_probs=63.5
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 92 VFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 92 ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
|||+|||+++++++|+.+|+.||.|..+++..++.+.++++|||+|.+.++|..|+ .+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999887889999999999999999999 6788999999885
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6e-15 Score=119.85 Aligned_cols=81 Identities=28% Similarity=0.424 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....+|-|.||+.++++.+|+++|.+||.|.+|.|.+++ ||.++|||||+|.++++|.+|| .|||+-+..--|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356789999999999999999999999999999999999 8999999999999999999999 89999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=2e-14 Score=133.04 Aligned_cols=73 Identities=26% Similarity=0.485 Sum_probs=68.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcC--CCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSC--GTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..++|||+||++++++++|+++|++| |.|++|.++ ++||||+|.+.++|.+|+ .||++.|.|+.|+|.+|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 35789999999999999999999999 999999875 579999999999999999 79999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
++.
T Consensus 305 kp~ 307 (578)
T TIGR01648 305 KPV 307 (578)
T ss_pred cCC
Confidence 764
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=1.1e-14 Score=135.02 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=75.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
.++|||+||++++++++|+.+|+.||.|.+|+|++++ +++++|||||+|.+.++|.+|| .||+..|+|+.|+|.++.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 4789999999999999999999999999999999998 6889999999999999999999 8999999999999999986
Q ss_pred CC
Q 041633 167 NV 168 (237)
Q Consensus 167 ~~ 168 (237)
.+
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 43
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=7.3e-15 Score=123.82 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=73.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|+|+|||+...+-||+.+|++||.|.+|.|+.+.- .+|||+||+|.+.++|++|- +|||..|.||+|.|..|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 467999999999999999999999999999999998753 47999999999999999999 8999999999999999865
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.4e-14 Score=117.90 Aligned_cols=78 Identities=28% Similarity=0.549 Sum_probs=72.6
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....+++||||||+.-+|++.|++.|++||+|..|+|-++ +||+||.|.+.++|..|| .+|++.|.|+.++|.|
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3456799999999999999999999999999999999876 799999999999999999 9999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
-+..
T Consensus 235 GKe~ 238 (321)
T KOG0148|consen 235 GKEG 238 (321)
T ss_pred cccC
Confidence 8764
No 20
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.6e-14 Score=117.25 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=71.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
.+++|||+||++.+|+++|++||+.||.|.+|+|+++. ..++||||+|.++++|+.|+.|+|..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 36899999999999999999999999999999999874 456899999999999999999999999999999998753
No 21
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.55 E-value=2.3e-14 Score=113.86 Aligned_cols=80 Identities=31% Similarity=0.557 Sum_probs=76.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....+|-|-||.+-++.++|+.+|++||.|-.|.|+.++ |+.++|||||-|....+|+.|+ +|+|..|.|+.|+|+.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 346789999999999999999999999999999999999 8999999999999999999999 89999999999999998
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 63
No 22
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.2e-14 Score=108.17 Aligned_cols=85 Identities=27% Similarity=0.427 Sum_probs=78.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..+..|||.++...+|+++|...|..||+|..|++..++ ||-.+|||+|+|.+.+.|++|+ .+||..|.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456789999999999999999999999999999999998 8999999999999999999999 89999999999999999
Q ss_pred CCCCCCC
Q 041633 165 RTNVPGM 171 (237)
Q Consensus 165 ~~~~~~~ 171 (237)
....|..
T Consensus 150 Fv~gp~~ 156 (170)
T KOG0130|consen 150 FVKGPER 156 (170)
T ss_pred EecCCcc
Confidence 7654433
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.5e-14 Score=129.00 Aligned_cols=83 Identities=35% Similarity=0.518 Sum_probs=74.4
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-Hh-----CC-ceeCC
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QL-----NE-SELHG 156 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l-----~g-~~l~g 156 (237)
.....++|||.|||+++|+++|..+|++||+|..+.|+.++ |++++|.|||.|.+..+|..|| .. .| ..|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 33456899999999999999999999999999999999999 8999999999999999999999 33 23 67899
Q ss_pred eeeEEEeCCCC
Q 041633 157 RQLKVLPKRTN 167 (237)
Q Consensus 157 ~~i~V~~a~~~ 167 (237)
|.|.|..|-++
T Consensus 368 R~Lkv~~Av~R 378 (678)
T KOG0127|consen 368 RLLKVTLAVTR 378 (678)
T ss_pred cEEeeeeccch
Confidence 99999998654
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=2e-14 Score=126.99 Aligned_cols=78 Identities=19% Similarity=0.414 Sum_probs=71.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCH--HHHHHHH-HhCCceeCCeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEI--DAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~--~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....+||||||++.+++++|+..|..||.|..|.|++. +| ||||||+|.+. .++.+|| .|||..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34679999999999999999999999999999999933 56 99999999987 6899999 8999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9764
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=5.6e-14 Score=128.24 Aligned_cols=80 Identities=33% Similarity=0.544 Sum_probs=75.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||..+++++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||.|+|..|.|+.|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 3457899999999999999999999999999999999998 799999999999999999999999999999999999986
Q ss_pred C
Q 041633 165 R 165 (237)
Q Consensus 165 ~ 165 (237)
.
T Consensus 166 ~ 166 (457)
T TIGR01622 166 Q 166 (457)
T ss_pred c
Confidence 4
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.3e-15 Score=117.15 Aligned_cols=82 Identities=28% Similarity=0.506 Sum_probs=77.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++||||+|...+++.-|...|-+||.|..|.++.|. +++++||+||+|...++|.+|| .||+..|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 346899999999999999999999999999999999998 8999999999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=5.6e-14 Score=130.03 Aligned_cols=78 Identities=29% Similarity=0.488 Sum_probs=72.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC-CeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH-GRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~-g~~i~V~~a~ 165 (237)
..++|||+|||+++++++|+.+|++||.|..|+|+.+.+++++|||||+|.+.++|++|| .||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999 89999885 7887777653
No 28
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=5.3e-15 Score=115.30 Aligned_cols=82 Identities=26% Similarity=0.477 Sum_probs=76.2
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.=..+.-|||||||+..|+.+|.-.|++||.|..|.+++|+ ||+++||||+.|.+..+.-.|+ .|||..|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 33457789999999999999999999999999999999999 8999999999999999999999 899999999999999
Q ss_pred eCCC
Q 041633 163 PKRT 166 (237)
Q Consensus 163 ~a~~ 166 (237)
....
T Consensus 111 Hv~~ 114 (219)
T KOG0126|consen 111 HVSN 114 (219)
T ss_pred eccc
Confidence 7643
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=7.2e-14 Score=130.76 Aligned_cols=76 Identities=25% Similarity=0.468 Sum_probs=72.9
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
+|||+|||+++|+++|.++|++||.|.+|+|+++. +++++|||||+|.+.++|.+|| .+++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 79999999999999999999999999999999998 7999999999999999999999 8999999999999999853
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.51 E-value=7.7e-14 Score=130.57 Aligned_cols=80 Identities=25% Similarity=0.509 Sum_probs=76.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
....+|||+||++++|+++|+++|++||.|.+|+|+.+.++.++|||||+|.+.++|.+|+ .||++.|+|++|.|.+|.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 3467899999999999999999999999999999999988999999999999999999999 899999999999999986
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
.
T Consensus 363 ~ 363 (562)
T TIGR01628 363 R 363 (562)
T ss_pred C
Confidence 5
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.51 E-value=1.4e-13 Score=127.14 Aligned_cols=80 Identities=19% Similarity=0.410 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..++|||+|||+.+|+++|+++|++||.|..+.|+.+. +|.++|||||+|.+.+.|..|| .|+|+.|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999987 7999999999999999999999 899999999999999996
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.51 E-value=1.4e-13 Score=92.07 Aligned_cols=71 Identities=38% Similarity=0.671 Sum_probs=66.2
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
+|||+|||..++.++|+.+|.+||.|..+.+..++ +.++++|||+|.+.+.|..|+ .+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 778899999999999999999 799999999998873
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=9.6e-14 Score=126.69 Aligned_cols=78 Identities=32% Similarity=0.585 Sum_probs=74.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
.++|||+|||..+|+++|+.+|++||.|..|.|+.++ +|+++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999988 6899999999999999999999 8999999999999999863
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=4.4e-14 Score=123.33 Aligned_cols=80 Identities=28% Similarity=0.503 Sum_probs=74.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeC-CeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELH-GRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~-g~~i~V~~ 163 (237)
..++.||||.||.++.+++|.-+|++.|.|-.++||.++ +|.+||||||+|++.+.|+.|+ .||+++|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 457899999999999999999999999999999999998 8999999999999999999999 89999985 99999987
Q ss_pred CCC
Q 041633 164 KRT 166 (237)
Q Consensus 164 a~~ 166 (237)
+-.
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 643
No 35
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=2.4e-13 Score=112.73 Aligned_cols=155 Identities=38% Similarity=0.530 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc---hhccccCcccCCCCeEEEecCCCCCCHHHHHHHhhcC
Q 041633 37 VKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSC 113 (237)
Q Consensus 37 ~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~ 113 (237)
+-++........+++....+++.++..+.+.+.....+.. .......+...+.+.+||+|+.+.+|.+++..+|+.|
T Consensus 46 ~~~i~~~~~~~~e~e~~i~~le~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~C 125 (231)
T KOG4209|consen 46 NFKISANYNRSSEKEWEITKLERMCPATVKPLMDLSLKAAVVVKEKFPERQKEVDAPSVWVGNVDFLVTLTKIELHFESC 125 (231)
T ss_pred CcccchhhcccccchhhhHHHHhhchhhhhhhhhcccccchhhhhcchhhhhccCCceEEEeccccccccchhhheeecc
Confidence 4556777777777788888888888877774433222211 1122223455678899999999999999999999999
Q ss_pred CCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q 041633 114 GTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNP-YMGYRGRRPY 191 (237)
Q Consensus 114 G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~~~~~~~~~~~r~~~~-~~g~~~~~~~ 191 (237)
|.|..+.|+.++ +++++||+||+|.+.+.+..|+.|++..|.++.|.|.+.+.+.++.+...++++.. ..+++.+.+.
T Consensus 126 g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~~pg~~~~~~~~~~~~~~~f~~~~~~ 205 (231)
T KOG4209|consen 126 GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTNVPGMGRSSPPRRTSPRWTFRLEWPP 205 (231)
T ss_pred CCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeeecCCcCCCCCCcccCCCCccccccCC
Confidence 999999999999 57899999999999999999999999999999999999998887776665554322 3344444433
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.3e-13 Score=112.25 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=75.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
...|||+-|...|+-+.|++.|.+||+|..++|++|. |+++|||+||.|...++|+.|| .|||..|++|.|+-.||.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5679999999999999999999999999999999999 8999999999999999999999 8999999999999999954
Q ss_pred CC
Q 041633 167 NV 168 (237)
Q Consensus 167 ~~ 168 (237)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 43
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=5e-13 Score=111.77 Aligned_cols=77 Identities=38% Similarity=0.742 Sum_probs=74.3
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.++|||+|||+.+|+++|..+|.+||.|..+.++.++ +++++|||||+|.+.+.|..|+ .+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999997 8999999999999999999999 899999999999999965
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.6e-13 Score=88.77 Aligned_cols=69 Identities=43% Similarity=0.686 Sum_probs=64.5
Q ss_pred EecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 94 VGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 94 V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
|+|||..+++++|+.+|.+||.|..+.+..++ ++.++++|||+|.+.+.|..|+ .+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887 6889999999999999999999 899999999999873
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1.4e-12 Score=87.70 Aligned_cols=73 Identities=41% Similarity=0.633 Sum_probs=68.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
+|||+|||+.+++++|+.+|..||.|..+.+..++.+.++++|||+|.+.+.|..|+ .+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999999998876678999999999999999999 8999999999999864
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=9.3e-13 Score=115.18 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~ 167 (237)
-+.|||.||+.++|++.|+++|++||.|++|+.++ -||||.|..+++|.+|| .+|++.|.|..|.|..|++.
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r-------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR-------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeeccc-------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 46799999999999999999999999999998874 49999999999999999 89999999999999999875
Q ss_pred C
Q 041633 168 V 168 (237)
Q Consensus 168 ~ 168 (237)
.
T Consensus 332 ~ 332 (506)
T KOG0117|consen 332 D 332 (506)
T ss_pred h
Confidence 3
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=8.4e-13 Score=94.08 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=70.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
.++.|||.|||+.+|.+++-++|++||.|..|+|-..+ ..+|.|||.|++..+|.+|+ .|+|..+.++.|.|.+-.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 46889999999999999999999999999999996554 45899999999999999999 8999999999999998644
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=7e-13 Score=118.65 Aligned_cols=79 Identities=34% Similarity=0.634 Sum_probs=76.0
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~ 167 (237)
+.|||||||+++++++|..+|+..|.|.+++++.|+ +|+++||+|++|.+.+.|..|+ .|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 8999999999999999999999 89999999999999999654
Q ss_pred C
Q 041633 168 V 168 (237)
Q Consensus 168 ~ 168 (237)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.2e-12 Score=107.62 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=77.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
+.....|.|--||..+|.++|+.+|...|+|++|++++|+ +|++.||+||.|-++.+|++|+ .|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3445678898999999999999999999999999999999 8999999999999999999999 8999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
||+.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9875
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.39 E-value=2.2e-12 Score=118.63 Aligned_cols=77 Identities=26% Similarity=0.397 Sum_probs=71.2
Q ss_pred CCCCeEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.++++|||+||++ .+|+++|+.+|+.||.|.+|+|+.++ +|||||+|.+.++|..|| .||+..|.|++|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999998 69999999999999999999999864 799999999999999999 79999999999999998
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 653
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=5.2e-13 Score=114.20 Aligned_cols=79 Identities=32% Similarity=0.512 Sum_probs=74.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++||||.|++.+.++.|+..|..||+|++|.+.-|+ |++++|||||+|.-++.|+.|+ .|||..++||.|+|...
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 347899999999999999999999999999999998888 8999999999999999999999 89999999999999855
Q ss_pred C
Q 041633 165 R 165 (237)
Q Consensus 165 ~ 165 (237)
.
T Consensus 191 s 191 (544)
T KOG0124|consen 191 S 191 (544)
T ss_pred C
Confidence 3
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=6.8e-13 Score=103.61 Aligned_cols=78 Identities=26% Similarity=0.437 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...||||+||+..++++.|-++|-+.|+|..++|++++ +...+|||||+|.++++|+-|+ -||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46899999999999999999999999999999999999 8889999999999999999999 699999999999999986
No 47
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.37 E-value=5.7e-12 Score=112.24 Aligned_cols=85 Identities=32% Similarity=0.477 Sum_probs=72.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
...+|||+|||++++..+|+++|.+||.|+...|..-. .++...||||+|.+..+++.||..+...|++++|.|...++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34569999999999999999999999999988776533 34445999999999999999997778889999999999987
Q ss_pred CCCCCC
Q 041633 167 NVPGMK 172 (237)
Q Consensus 167 ~~~~~~ 172 (237)
...+.+
T Consensus 367 ~~~g~~ 372 (419)
T KOG0116|consen 367 GFRGNG 372 (419)
T ss_pred cccccc
Confidence 655544
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.37 E-value=2.6e-12 Score=118.15 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=67.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-H--hCCceeCCeeeEEEeC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-Q--LNESELHGRQLKVLPK 164 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~--l~g~~l~g~~i~V~~a 164 (237)
++++|||+|||+.+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|.+|+ . +++..|.|+.|+|.++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 3689999999999999999999999999999999853 689999999999999999 4 4789999999999998
Q ss_pred C
Q 041633 165 R 165 (237)
Q Consensus 165 ~ 165 (237)
.
T Consensus 76 ~ 76 (481)
T TIGR01649 76 T 76 (481)
T ss_pred C
Confidence 5
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.4e-12 Score=113.73 Aligned_cols=84 Identities=30% Similarity=0.476 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCce-eCC--eeeEEEe
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESE-LHG--RQLKVLP 163 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~-l~g--~~i~V~~ 163 (237)
..++||||.|+..+|+.+++++|++||.|++|.|+++..+.+||||||+|.+.+-|..|| .||+.. +.| .+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 468999999999999999999999999999999999999999999999999999999999 899864 544 6899999
Q ss_pred CCCCCCCC
Q 041633 164 KRTNVPGM 171 (237)
Q Consensus 164 a~~~~~~~ 171 (237)
|++.+++.
T Consensus 203 ADtqkdk~ 210 (510)
T KOG0144|consen 203 ADTQKDKD 210 (510)
T ss_pred cccCCCch
Confidence 98765443
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.2e-12 Score=114.05 Aligned_cols=83 Identities=22% Similarity=0.467 Sum_probs=73.8
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCce-eC--Ceee
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESE-LH--GRQL 159 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~-l~--g~~i 159 (237)
.+...-++|||.||.+++|.+|+.+|++||.|.+|.|++|+ ++.++|||||.|.++++|.+|+ +||... |- ..+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34456689999999999999999999999999999999999 8999999999999999999999 887754 43 4689
Q ss_pred EEEeCCCC
Q 041633 160 KVLPKRTN 167 (237)
Q Consensus 160 ~V~~a~~~ 167 (237)
.|++|+..
T Consensus 110 qvk~Ad~E 117 (510)
T KOG0144|consen 110 QVKYADGE 117 (510)
T ss_pred eecccchh
Confidence 99999654
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.9e-12 Score=107.88 Aligned_cols=82 Identities=17% Similarity=0.381 Sum_probs=77.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..+...|||--|.+-+|.++|.-+|+.||.|.+|.|++++ ||.+..||||+|.+.+++++|. +|++..|..++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3456899999999999999999999999999999999999 8999999999999999999999 9999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
+.+.
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8653
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=5.9e-12 Score=109.96 Aligned_cols=79 Identities=35% Similarity=0.569 Sum_probs=74.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQ-SCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..+.+||.|||+++.+.+|+.+|. +.|+|+.|.++.|.+|+++|||.|+|++++.+++|+ .||.+.++||+|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356799999999999999999998 689999999999999999999999999999999999 899999999999999774
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 3
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5.5e-12 Score=112.77 Aligned_cols=80 Identities=25% Similarity=0.430 Sum_probs=74.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+..+|.|.||||.+...+|+.+|+.||.|..|.|++.+.|+.+|||||.|....+|..|| .+|++.|.||+|-|.||-
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3467899999999999999999999999999999998778888899999999999999999 899999999999999995
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
+
T Consensus 195 ~ 195 (678)
T KOG0127|consen 195 D 195 (678)
T ss_pred c
Confidence 4
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=2.8e-11 Score=78.45 Aligned_cols=55 Identities=38% Similarity=0.695 Sum_probs=49.6
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 106 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 106 L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
|..+|++||.|..+.+.... +++|||+|.+.++|..|+ .||+..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 599999999999999999 79999999999999986
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=3.5e-11 Score=81.72 Aligned_cols=59 Identities=25% Similarity=0.491 Sum_probs=52.8
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeCC-C--CCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 103 PEEVQQHFQ----SCGTVNRVT-ILTDK-F--GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 103 ~~~L~~~F~----~~G~i~~v~-i~~~~-~--g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
+++|+.+|+ +||.|.+|. |+.++ + ++++||+||+|.+.++|.+|+ .|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888998 999999995 66655 5 889999999999999999999 89999999999986
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=1.1e-11 Score=103.28 Aligned_cols=71 Identities=25% Similarity=0.507 Sum_probs=67.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~ 167 (237)
.+|||||||..+++.+|+.+|++||.|..|.|+ |.|+||..++...+..|+ .||+.+|+|..|+|..++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999998 679999999999999999 79999999999999988665
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.23 E-value=3.2e-11 Score=111.49 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=63.9
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcC------------CCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCc
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSC------------GTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNES 152 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~------------G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~ 152 (237)
.....++|||||||+.+|+++|..||.++ +.|..+.+ ++.+|||||+|.+.++|..||+|+|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 34457899999999999999999999975 23444444 34589999999999999999999999
Q ss_pred eeCCeeeEEEeCC
Q 041633 153 ELHGRQLKVLPKR 165 (237)
Q Consensus 153 ~l~g~~i~V~~a~ 165 (237)
.|.|+.|+|....
T Consensus 246 ~~~g~~l~v~r~~ 258 (509)
T TIGR01642 246 IYSNVFLKIRRPH 258 (509)
T ss_pred EeeCceeEecCcc
Confidence 9999999998653
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.20 E-value=1.9e-11 Score=109.53 Aligned_cols=78 Identities=32% Similarity=0.597 Sum_probs=73.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+..+||||||.+++++++|+..|++||.|..|.++.+. +|.++||+||+|...+.|.+|+ .|||..|.|+.|+|..-
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 344559999999999999999999999999999999998 9999999999999999999999 89999999999999865
No 59
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.6e-10 Score=95.14 Aligned_cols=79 Identities=28% Similarity=0.362 Sum_probs=74.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
...|||=||.+++.+.-|-++|++||.|..|+|++|. +.+.|||+||++.+-++|..|+ .|||..+.+|.|.|.+...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 5689999999999999999999999999999999999 5999999999999999999999 8999999999999998754
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 3
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=99.11 Aligned_cols=79 Identities=24% Similarity=0.507 Sum_probs=70.6
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-H-hCCceeCCeeeE
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-Q-LNESELHGRQLK 160 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~-l~g~~l~g~~i~ 160 (237)
...+..-.+|||++|...+++.+|+.+|.+||+|.+|.++.. +++|||+|.+..+|+.|. + ++...|+|++|.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 334555789999999999999999999999999999998764 679999999999999998 4 787789999999
Q ss_pred EEeCCC
Q 041633 161 VLPKRT 166 (237)
Q Consensus 161 V~~a~~ 166 (237)
|.|.++
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=6.5e-11 Score=97.77 Aligned_cols=86 Identities=23% Similarity=0.355 Sum_probs=80.1
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
..+...+|+|||-.||.+..+.+|...|-.||.|.+.++..|+ |+.+|.|+||.|.++.+|+.|| .|||+.|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 4455679999999999999999999999999999999999999 8999999999999999999999 8999999999999
Q ss_pred EEeCCCCC
Q 041633 161 VLPKRTNV 168 (237)
Q Consensus 161 V~~a~~~~ 168 (237)
|...|++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99988753
No 62
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.12 E-value=6.7e-11 Score=101.84 Aligned_cols=81 Identities=23% Similarity=0.505 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||++|+|.++++.|+.+|.+||.|..|.+++++ +++++||+||+|.+.+.+.++|....+.|.|+.|.+..|-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 57899999999999999999999999999999999999 79999999999999999999987777899999999999866
Q ss_pred CC
Q 041633 167 NV 168 (237)
Q Consensus 167 ~~ 168 (237)
+.
T Consensus 85 r~ 86 (311)
T KOG4205|consen 85 RE 86 (311)
T ss_pred cc
Confidence 53
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.12 E-value=2.4e-10 Score=92.39 Aligned_cols=78 Identities=18% Similarity=0.396 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCCCCHHHHHH----HhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQ----HFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~----~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
+..||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|..|+ .|+|..+.|++++|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 455999999999999999988 999999998887653 5688999999999999999999 899999999999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
||+..
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 99765
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=2.1e-10 Score=91.48 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=72.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcC-CCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSC-GTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~-G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....-+||..||..+.+..|..+|.+| |.+..+++.+++ ||.++|||||+|.+.+.|.-|. .||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345678999999999999999999998 678888888888 9999999999999999999999 8999999999999987
Q ss_pred CCC
Q 041633 164 KRT 166 (237)
Q Consensus 164 a~~ 166 (237)
-.+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 754
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.1e-10 Score=100.55 Aligned_cols=74 Identities=26% Similarity=0.452 Sum_probs=70.4
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
.|||.||+++++...|..+|+.||.|.+|++..+.+| ++|| ||+|.+.++|++|+ .+||..+.++.|.|.....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3999999999999999999999999999999999988 8999 99999999999999 8999999999999987744
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2.1e-10 Score=94.73 Aligned_cols=81 Identities=30% Similarity=0.461 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcee-C--CeeeEEE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESEL-H--GRQLKVL 162 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l-~--g~~i~V~ 162 (237)
...++||||.|...-.|++++.+|..||.|.+|.+++...|.+||||||.|.+.-+|+.|| .|||... - ...|.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 3578999999999999999999999999999999999999999999999999999999999 8998653 3 4679999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
++++.
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 99764
No 67
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.07 E-value=2.9e-10 Score=89.00 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=73.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
...+.+|||+||.+++++..|-..|+.||.|.. -.|+++. +|.++||+||.|.+.+.+.+|+ .+|+..++.++|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344689999999999999999999999998854 5788888 7999999999999999999999 899999999999999
Q ss_pred eCCC
Q 041633 163 PKRT 166 (237)
Q Consensus 163 ~a~~ 166 (237)
++..
T Consensus 173 ya~k 176 (203)
T KOG0131|consen 173 YAFK 176 (203)
T ss_pred EEEe
Confidence 9964
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=3e-10 Score=105.35 Aligned_cols=75 Identities=19% Similarity=0.468 Sum_probs=69.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
.++|||||+|+..+++.+|..+|+.||+|.+|.++. +++||||++..+.+|.+|| +|+...+.++.|+|.||..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 467999999999999999999999999999998875 4899999999999999999 9999999999999999965
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.05 E-value=2.2e-10 Score=95.61 Aligned_cols=75 Identities=28% Similarity=0.552 Sum_probs=69.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...+.+|+||||.+.++..+|+..|.+||+|..|.|+ ++|+||.|.-.++|..|+ .|++..|.|++++|..+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4567899999999999999999999999999999998 579999999999999999 89999999999999988
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
.++
T Consensus 148 tsr 150 (346)
T KOG0109|consen 148 TSR 150 (346)
T ss_pred ccc
Confidence 654
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.04 E-value=7.8e-10 Score=95.27 Aligned_cols=79 Identities=27% Similarity=0.504 Sum_probs=74.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~~ 167 (237)
.++|||++||.++++++|+.+|.+||.|..+.++.|+ +.+++||+||+|.+++++.+++...-+.|+++.+.|..|-++
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccch
Confidence 5699999999999999999999999999999999998 799999999999999999999988889999999999999654
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.03 E-value=7.7e-10 Score=99.70 Aligned_cols=83 Identities=18% Similarity=0.387 Sum_probs=75.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
+++|||.+|+..+...+|+.+|++||.|.-.+|+.+. +...+.|+||++.+...|.+|| .||.+.|+|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 5789999999999999999999999999999999886 6567889999999999999999 8999999999999999987
Q ss_pred CCCCC
Q 041633 167 NVPGM 171 (237)
Q Consensus 167 ~~~~~ 171 (237)
.+.+.
T Consensus 485 Ep~Gk 489 (940)
T KOG4661|consen 485 EPGGK 489 (940)
T ss_pred Ccccc
Confidence 65443
No 72
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.97 E-value=4.3e-09 Score=96.96 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=74.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC----CCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF----GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
+...++|||+||++.++++.|...|+.||+|..++|+-.++ .+.+.|+||.|.+..+|++|+ .|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999999987763 467889999999999999999 8999999999999
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
+.|+++.
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9999653
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=5.2e-10 Score=103.00 Aligned_cols=79 Identities=25% Similarity=0.493 Sum_probs=73.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..+|+|.|||+..+..+++.+|..||.|.+|+|+.-. .+.++|||||+|-++..|.+|+ .|..+.|.||+|.+.||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 5799999999999999999999999999999998774 4678999999999999999999 8999999999999999976
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 4
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.7e-09 Score=99.62 Aligned_cols=75 Identities=31% Similarity=0.493 Sum_probs=69.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCC----ceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ----PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~----~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
+|||.||++++|.+.|..+|..+|.|.++.|...+... +.|||||+|.+.++|+.|+ .|+|+.|.|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999998776433 4599999999999999999 899999999999999997
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.8e-09 Score=92.83 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC-CCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...+|||..+.++.++++|+..|+.||+|..|.+.+.++ +.++||+||+|.+..+...|+ .||-+.|+|+.|+|..+-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 346899999999999999999999999999999999995 789999999999999999999 899999999999999886
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
+++
T Consensus 289 TPP 291 (544)
T KOG0124|consen 289 TPP 291 (544)
T ss_pred CCC
Confidence 544
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.1e-09 Score=94.24 Aligned_cols=72 Identities=25% Similarity=0.455 Sum_probs=68.2
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..|||| +++|+..|.++|+++|++.+++++++. + +-|||||.|.++.+|++|| ++|...|.|++|+|.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 468999 899999999999999999999999998 6 9999999999999999999 8999999999999999954
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.88 E-value=2.9e-08 Score=82.56 Aligned_cols=80 Identities=28% Similarity=0.423 Sum_probs=74.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
....+|+|.|||..+++.+|+++|..||.+..+.|-.+++|.+.|.|-|.|...++|.+|+ .+++..+.|+.|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3357899999999999999999999999999999999999999999999999999999999 899999999999998774
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.87 E-value=4.3e-09 Score=92.34 Aligned_cols=74 Identities=26% Similarity=0.408 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||.|||+++|+..|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+ .|++..|.||.|+|.+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3468899999999999999999999999999888854 366676 89999999999999 79999999999999874
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.84 E-value=1.1e-08 Score=87.32 Aligned_cols=81 Identities=27% Similarity=0.469 Sum_probs=73.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCee--------EEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVN--------RVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGR 157 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~ 157 (237)
..+..|||.|||.++|.+++..+|++||-|. .|+|.++..|+.+|-|.|.|...+++..|+ -|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3466799999999999999999999999775 478888888999999999999999999999 7999999999
Q ss_pred eeEEEeCCCC
Q 041633 158 QLKVLPKRTN 167 (237)
Q Consensus 158 ~i~V~~a~~~ 167 (237)
.|+|..|+-.
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999999654
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.78 E-value=5.7e-08 Score=78.61 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CC-CCceeEEEEEeCCHHHHHHHH-HhCCceeC---CeeeEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KF-GQPKGFAYVEFLEIDAVQEAL-QLNESELH---GRQLKV 161 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~-~~-g~~~g~afV~f~~~~~a~~al-~l~g~~l~---g~~i~V 161 (237)
.-+||||.+||.++...+|..+|..|-..+.+.|-.. +. .-.+-+||++|.+...|.+|+ .|||..|. +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999999876666655332 22 235689999999999999999 89999985 789999
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
..|+++.
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9998764
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=83.19 Aligned_cols=71 Identities=27% Similarity=0.556 Sum_probs=65.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~ 167 (237)
..||||+||+.+.+.+|..||..||.|..+.+. .||+||+|.+..+|..|+ .+|+..|.+-.+.|.+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999998874 689999999999999999 99999999988999999764
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.71 E-value=1.2e-08 Score=83.82 Aligned_cols=80 Identities=19% Similarity=0.420 Sum_probs=73.8
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.+....+||+|-|..+++.+.|...|.+|-.....++++++ +|+++||+||.|.++.++..|+ +|+|..++.+.|+++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 33456899999999999999999999999988888999998 9999999999999999999999 899999999999887
Q ss_pred eC
Q 041633 163 PK 164 (237)
Q Consensus 163 ~a 164 (237)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 65
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.9e-08 Score=89.54 Aligned_cols=73 Identities=21% Similarity=0.482 Sum_probs=65.9
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
..+...++|+|-|||.++++++|+.+|+.||+|..|+.... .+|.+||+|.+...|+.|+ +|++..+.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34567899999999999999999999999999998776544 4899999999999999999 8999999999988
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.4e-08 Score=81.80 Aligned_cols=77 Identities=26% Similarity=0.282 Sum_probs=71.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
.+||||+|+...++++.|.++|-+.|+|..|.|+.++.++.+ ||||.|.++-++.-|+ .+||..+.++.|.|.+...
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 589999999999999999999999999999999988877777 9999999999999999 7999999999999887643
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.54 E-value=4.8e-07 Score=80.71 Aligned_cols=78 Identities=26% Similarity=0.491 Sum_probs=67.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~~ 167 (237)
...-|-+.+|||++|+++|.+||+.++ |+.+.+++ .+|+..|-|||+|.+.+++++||+.+...+..|.|.|..+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 346778889999999999999999997 66654433 2699999999999999999999999999999999999988544
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.50 E-value=4.5e-07 Score=78.14 Aligned_cols=82 Identities=26% Similarity=0.459 Sum_probs=73.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCee--------EEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVN--------RVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
....-+|||-+||..+++++|..+|.++|.|. .|+|-+++ |+++|+-|.|+|.+...|++|+ -+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999874 36677777 8999999999999999999999 79999999
Q ss_pred CeeeEEEeCCCC
Q 041633 156 GRQLKVLPKRTN 167 (237)
Q Consensus 156 g~~i~V~~a~~~ 167 (237)
+..|+|..|..+
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999998544
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.45 E-value=1.8e-06 Score=77.19 Aligned_cols=78 Identities=23% Similarity=0.428 Sum_probs=68.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
.....|-+.+||+.||+++|.+||+..-.+.. |.++.++.+++.|-|||.|.+.+.|++||.-|...|+.|.|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 34578999999999999999999997765544 6677777888999999999999999999988888999999999977
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.42 E-value=2.9e-06 Score=60.95 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=65.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhhc--CCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeC----CeeeEE
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQS--CGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELH----GRQLKV 161 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~--~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~----g~~i~V 161 (237)
+||.|.|||...|.++|.+++.. .|..--+-++.|. ++.+.|||||.|.+++.|.... .++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988875 3566677788886 7889999999999999999998 89998874 567888
Q ss_pred EeCCC
Q 041633 162 LPKRT 166 (237)
Q Consensus 162 ~~a~~ 166 (237)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 89
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.37 E-value=1.4e-07 Score=85.04 Aligned_cols=80 Identities=33% Similarity=0.500 Sum_probs=74.8
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~ 163 (237)
.+...+++|+-.|+..++..+|..||+.+|.|..|+|+.++ +++++|.|||+|.+.+.+..||.|.|..+.|.+|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 34456899999999999999999999999999999999999 79999999999999999999999999999999999997
Q ss_pred C
Q 041633 164 K 164 (237)
Q Consensus 164 a 164 (237)
.
T Consensus 255 s 255 (549)
T KOG0147|consen 255 S 255 (549)
T ss_pred c
Confidence 6
No 90
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.30 E-value=7.3e-07 Score=76.54 Aligned_cols=81 Identities=32% Similarity=0.587 Sum_probs=71.9
Q ss_pred CCCeEE-EecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVF-VGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~if-V~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
...++| |++|++.++.++|..+|..+|.|..++++.++ ++..+||+||.|.....+..++..+...+.++.+.|.+..
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345666 99999999999999999999999999999888 7999999999999999999998437788999999999887
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
+.+
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 653
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.29 E-value=2e-06 Score=73.84 Aligned_cols=75 Identities=25% Similarity=0.441 Sum_probs=65.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
...+|||||-|++|+++|.+.+...| .|..+++..++ +|++||||+|...+..++++.+ -|..++|+|+.-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 45689999999999999999998877 67788888888 6999999999999999888888 6888999998766654
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.22 E-value=5.3e-06 Score=72.65 Aligned_cols=75 Identities=28% Similarity=0.415 Sum_probs=68.5
Q ss_pred CCeEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
+..|.|.||... +|.+.|..+|+.||.|.+|+|+.++ +--|.|.|.+...|+.|+ .|+|+.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578899999765 8999999999999999999999876 567999999999999999 8999999999999999975
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 3
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.14 E-value=1.7e-06 Score=78.72 Aligned_cols=79 Identities=25% Similarity=0.473 Sum_probs=73.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...+|||++||...++.+++++...||.+....++.+. +|-++||||.+|.++.....|+ .|||+.+.++.|.|..|-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 35789999999999999999999999999999999888 6899999999999999999999 899999999999999884
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
.
T Consensus 368 ~ 368 (500)
T KOG0120|consen 368 V 368 (500)
T ss_pred c
Confidence 3
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.07 E-value=1.7e-05 Score=64.57 Aligned_cols=76 Identities=16% Similarity=0.316 Sum_probs=67.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC-CeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH-GRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~-g~~i~V~~ 163 (237)
..+...+|+.|||..++.+.|..+|.+|.....|+++..+ ++.|||+|.+...|..|. .+.+..|. ...+.|.+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 4567899999999999999999999999999999998765 789999999999999999 89998887 77888887
Q ss_pred CC
Q 041633 164 KR 165 (237)
Q Consensus 164 a~ 165 (237)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 64
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.00 E-value=2.2e-05 Score=54.30 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=46.3
Q ss_pred CeEEEecCCCCCCHHH----HHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 90 RSVFVGNVDYACTPEE----VQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~----L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..|||.|||....... |++++..+| .|..|. .+.|+|.|.+.+.|.+|+ .|+|..+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999887765 456666776 554442 478999999999999999 8999999999999998
Q ss_pred CC
Q 041633 164 KR 165 (237)
Q Consensus 164 a~ 165 (237)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 83
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.96 E-value=4e-05 Score=65.80 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=61.6
Q ss_pred CCeEEEecCCCCCCHHH----H--HHHhhcCCCeeEEEEeeCC-C-CCcee--EEEEEeCCHHHHHHHH-HhCCceeCCe
Q 041633 89 SRSVFVGNVDYACTPEE----V--QQHFQSCGTVNRVTILTDK-F-GQPKG--FAYVEFLEIDAVQEAL-QLNESELHGR 157 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~----L--~~~F~~~G~i~~v~i~~~~-~-g~~~g--~afV~f~~~~~a~~al-~l~g~~l~g~ 157 (237)
..-+||-+||+.+..++ | .+||++||.|..|.|.+.. + ....+ -.||+|.+.++|..|| +.+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999876655 3 5899999999998776543 1 11222 2499999999999999 8999999999
Q ss_pred eeEEEeCCC
Q 041633 158 QLKVLPKRT 166 (237)
Q Consensus 158 ~i~V~~a~~ 166 (237)
.|+..|-..
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999987643
No 97
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.95 E-value=5.9e-05 Score=66.57 Aligned_cols=68 Identities=26% Similarity=0.390 Sum_probs=56.2
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeC---C-C--CC--------ceeEEEEEeCCHHHHHHHHH
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD---K-F--GQ--------PKGFAYVEFLEIDAVQEALQ 148 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~---~-~--g~--------~~g~afV~f~~~~~a~~al~ 148 (237)
...+.+.++|.+-|||.+-.-+-|.++|+.+|.|..|+|+.. + + +. .+-+|||+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 334568999999999999888999999999999999999876 3 1 22 24579999999999999994
Q ss_pred hC
Q 041633 149 LN 150 (237)
Q Consensus 149 l~ 150 (237)
+.
T Consensus 305 ~~ 306 (484)
T KOG1855|consen 305 LL 306 (484)
T ss_pred hh
Confidence 33
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=7.2e-06 Score=67.03 Aligned_cols=71 Identities=28% Similarity=0.513 Sum_probs=62.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...+.|+|.+|+..+.+.+|..+|.++|.+....+ ..+++||+|.+.++|..|+ .|++..+.+++|.+...
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 45678999999999999999999999999844433 3689999999999999999 89999999999999443
No 99
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.82 E-value=2e-05 Score=64.03 Aligned_cols=64 Identities=23% Similarity=0.428 Sum_probs=53.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
-.||||.||..++|+++|+.+|+.|.....++|- .+.| -..||+.|.+.+.|..|+ .|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 4689999999999999999999999877666653 2323 357999999999999999 89887653
No 100
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.79 E-value=3.8e-05 Score=63.57 Aligned_cols=71 Identities=20% Similarity=0.365 Sum_probs=58.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-C--------CCceeE----EEEEeCCHHHHHHHH-HhCCce
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F--------GQPKGF----AYVEFLEIDAVQEAL-QLNESE 153 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~--------g~~~g~----afV~f~~~~~a~~al-~l~g~~ 153 (237)
....||+++||+.+.-.-|+++|+.||.|-+|.|-... + |.+... +.|+|.+...|..+. .||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 35689999999999999999999999999999886543 2 223332 568999999999888 899999
Q ss_pred eCCee
Q 041633 154 LHGRQ 158 (237)
Q Consensus 154 l~g~~ 158 (237)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98865
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.72 E-value=0.00011 Score=68.45 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=67.4
Q ss_pred CCCC-eEEEecCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 87 ADSR-SVFVGNVDYACTPEEVQQHFQSCGTV-NRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~-~ifV~nL~~~~t~~~L~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
.+++ .|-|.|+|++++-++|.+||..|-.+ -+|.+-++..|...|-|.|.|.+.+.|.+|. .|++..|..|.|.+..
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 67899999999999999999999866 5677766668999999999999999999999 8999999999988864
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.69 E-value=9.8e-05 Score=54.01 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=42.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh--C---CceeCCeeeEEEe
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QL--N---ESELHGRQLKVLP 163 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l--~---g~~l~g~~i~V~~ 163 (237)
..|+|.+++..++.++|+..|++||.|..|.+... ...|||-|.+.+.|+.|+ .+ . +..|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46889999999999999999999999999888653 457999999999999998 43 2 3455666655553
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00018 Score=45.81 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=42.9
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL 147 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al 147 (237)
+.|-|.+.+.+..+. +..+|.+||+|..+.+. ....+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 568888999887644 55699999999998885 23678999999999999985
No 104
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.54 E-value=0.00058 Score=59.76 Aligned_cols=78 Identities=17% Similarity=0.350 Sum_probs=68.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCC-CeeE--EEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCG-TVNR--VTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~--v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...|-+++||++.+.++|..||..|- .|.. |+++.+..|++.|-|||.|.+.+.|.+|. +.+.+....|.|.|..+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 56789999999999999999999886 3333 88888888999999999999999999998 78877778999999988
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
..
T Consensus 360 S~ 361 (508)
T KOG1365|consen 360 SV 361 (508)
T ss_pred cH
Confidence 54
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.47 E-value=0.002 Score=56.28 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCeEEEecC--CCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC--CeeeEEE
Q 041633 88 DSRSVFVGNV--DYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH--GRQLKVL 162 (237)
Q Consensus 88 ~~~~ifV~nL--~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~--g~~i~V~ 162 (237)
+++.|.+.-| -+.||.+.|-.+....|+|.+|.|.+. .---|.|+|.+.+.|++|. .|||..|. -..|+|.
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 3445555444 456899999999999999999988753 3456999999999999999 89999874 4689999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
+|++.
T Consensus 195 yAkP~ 199 (494)
T KOG1456|consen 195 YAKPT 199 (494)
T ss_pred ecCcc
Confidence 99875
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0005 Score=62.21 Aligned_cols=81 Identities=28% Similarity=0.411 Sum_probs=65.7
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHH-----hCCceeC
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQ-SCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQ-----LNESELH 155 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~-----l~g~~l~ 155 (237)
.+...+.+|||||+||.-++.++|..+|. -||.|..+-|-.|+ -+-++|-+=|+|.+..+.-+||. ++...|.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc
Confidence 34455789999999999999999999999 69999999998885 68899999999999999999983 3323333
Q ss_pred CeeeEEEeC
Q 041633 156 GRQLKVLPK 164 (237)
Q Consensus 156 g~~i~V~~a 164 (237)
++|.|++-
T Consensus 444 -KRVEIkPY 451 (520)
T KOG0129|consen 444 -KRVEIKPY 451 (520)
T ss_pred -eeeeecce
Confidence 35666643
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00063 Score=62.18 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCeEEEecCCCCCCH------HHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC-CeeeE
Q 041633 89 SRSVFVGNVDYACTP------EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH-GRQLK 160 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~------~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~-g~~i~ 160 (237)
...|+|-|+|.--.. ..|..+|+++|+|..+.++.+..|..+||.|++|.+...|+.|+ .|||+.|. .+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 467899999864322 24678899999999999998887779999999999999999999 89999986 56677
Q ss_pred EEe
Q 041633 161 VLP 163 (237)
Q Consensus 161 V~~ 163 (237)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 764
No 108
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.38 E-value=0.00094 Score=48.29 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=52.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEE-EeeC-------CCCCceeEEEEEeCCHHHHHHHHHhCCceeCCe-ee
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT-ILTD-------KFGQPKGFAYVEFLEIDAVQEALQLNESELHGR-QL 159 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~-i~~~-------~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~-~i 159 (237)
.+-|.|-+.|+..+ ..|..+|++||.|.+.. +.++ +.........|+|.++.+|.+||..||..|.|. .+
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 45688889998855 66788999999997764 1111 111235688999999999999999999999985 45
Q ss_pred EEEeCC
Q 041633 160 KVLPKR 165 (237)
Q Consensus 160 ~V~~a~ 165 (237)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577764
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.27 E-value=0.0017 Score=56.76 Aligned_cols=77 Identities=29% Similarity=0.347 Sum_probs=68.7
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..+++.+.|-+|... ++-+.|..+|-.||.|++|++++.+ .|.|+|++.+..++++|+ .||+..+-|.+|.|..
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 345778999999886 5668899999999999999999876 678999999999999999 8999999999999998
Q ss_pred CCC
Q 041633 164 KRT 166 (237)
Q Consensus 164 a~~ 166 (237)
++.
T Consensus 360 SkQ 362 (494)
T KOG1456|consen 360 SKQ 362 (494)
T ss_pred ccc
Confidence 864
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.26 E-value=0.00023 Score=62.17 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=62.0
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcC----CCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSC----GTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
-.|-+++||+++++.++..||.+- |..+.|.++..++|+..|-|||.|..++.|+.||.-|...|+-|.|.+..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456778999999999999999732 345677777777899999999999999999999977777777777776644
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0021 Score=49.35 Aligned_cols=72 Identities=25% Similarity=0.319 Sum_probs=53.4
Q ss_pred CCCeEEEecCCC-----CCCH----HHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCee
Q 041633 88 DSRSVFVGNVDY-----ACTP----EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQ 158 (237)
Q Consensus 88 ~~~~ifV~nL~~-----~~t~----~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~ 158 (237)
+..||.|.-+.+ .... .+|.+.|..||.+.-++++. +.-+|+|.+-+.|.+|+.++|..++|+.
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALSLDGIQVNGRT 98 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHHGCCSEETTEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHccCCcEECCEE
Confidence 456777776651 1222 26778899999998888874 3589999999999999999999999999
Q ss_pred eEEEeCCC
Q 041633 159 LKVLPKRT 166 (237)
Q Consensus 159 i~V~~a~~ 166 (237)
|+|+...+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99998754
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.0012 Score=60.39 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCeeEEEEeeC-CC---CCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 105 EVQQHFQSCGTVNRVTILTD-KF---GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 105 ~L~~~F~~~G~i~~v~i~~~-~~---g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
+++.-+++||.|..|.|+++ .. .-..|-.||+|.+.++++.|+ +|+|..+.+|.|...|-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45566789999999999887 32 345788999999999999999 8999999999998887643
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00095 Score=60.44 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=47.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC--C--CCcee---EEEEEeCCHHHHHHHH
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK--F--GQPKG---FAYVEFLEIDAVQEAL 147 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~--~--g~~~g---~afV~f~~~~~a~~al 147 (237)
..-.++||||+||+.++++.|...|..||.+ .|.++... . -.++| |+|+.|.++.++..-|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 3457899999999999999999999999986 33444211 1 23566 9999999999888766
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.06 E-value=0.0018 Score=57.19 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=63.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCC-eeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHG-RQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g-~~i~V~~a 164 (237)
.+..+|.+.|||.++++++|+..|..-|-......- .++.+.+|++.+.+.+.|-.|+ .+|.+.++. ..|+|.++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf---f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF---FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee---cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 445689999999999999999999988865433221 2345789999999999999999 899999975 58999998
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 75
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=0.00078 Score=64.24 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
...|||.|+|+..|.++|+.+|..+|.+++++++..+.|+++|.|||.|.++..+..++ ..+...++-+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 45799999999999999999999999999999999999999999999999999999999 7888888877777777654
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.94 E-value=0.0012 Score=57.90 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=65.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC---C-CCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK---F-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
..|-|.||.+.+|.+++..+|.-.|.|..+.|+... + ....-.|||.|.+...+..|..|..+.+-++.|.|.+.-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 488999999999999999999999999999887643 1 345678999999999999998888899889888888663
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.017 Score=46.04 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=53.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
..+|.|.+||++.++++|+.+..+.|.|....+.++ |++.|+|...++.+-|+ .|....+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 468999999999999999999999999988887654 68999999999999999 78776654
No 118
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.78 E-value=0.006 Score=52.83 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=61.0
Q ss_pred CCCCeEEEecCCC----CCC-------HHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcee
Q 041633 87 ADSRSVFVGNVDY----ACT-------PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESEL 154 (237)
Q Consensus 87 ~~~~~ifV~nL~~----~~t-------~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l 154 (237)
...++|.+.||-. ..+ .++|++-..+||.|.+|.|.- .++.|.+-|.|.+.+.|..|| .|+|..|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3467899998742 223 345667788999999987753 256899999999999999999 8999999
Q ss_pred CCeeeEEEeCCC
Q 041633 155 HGRQLKVLPKRT 166 (237)
Q Consensus 155 ~g~~i~V~~a~~ 166 (237)
.||.|.-..-..
T Consensus 340 dgRql~A~i~DG 351 (382)
T KOG1548|consen 340 DGRQLTASIWDG 351 (382)
T ss_pred cceEEEEEEeCC
Confidence 999998776543
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.63 E-value=0.0022 Score=61.58 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=66.4
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCC--eeeEEE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHG--RQLKVL 162 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g--~~i~V~ 162 (237)
....+.+||++|..++....|...|..||.|..|.+- +..-||+|.|.+...++.|+ .|.+..|++ ++|+|.
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-----cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 3456889999999999999999999999999887763 33679999999999999999 799999985 779999
Q ss_pred eCCC
Q 041633 163 PKRT 166 (237)
Q Consensus 163 ~a~~ 166 (237)
++..
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 9864
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.63 E-value=0.00092 Score=55.55 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=51.1
Q ss_pred HHHHHHhh-cCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 104 EEVQQHFQ-SCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 104 ~~L~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
++|...|+ +||+|+.+.|..+..-+-.|-+||.|...++|++|+ .||+-.+.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34555556 899999987766554566888999999999999999 89999999999998876
No 121
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.55 E-value=0.0066 Score=50.58 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=63.1
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC--C--ceeCCeeeEEEeC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN--E--SELHGRQLKVLPK 164 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~--g--~~l~g~~i~V~~a 164 (237)
..|||.||+.-++.+.|...|+.||+|....++.|..+++.+-++|.|...-.|.+|+ .+. + .+..+++.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6899999999999999999999999998877777767888889999999999999998 442 2 2345677777766
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
..
T Consensus 112 eq 113 (275)
T KOG0115|consen 112 EQ 113 (275)
T ss_pred hc
Confidence 43
No 122
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.51 E-value=0.0025 Score=58.77 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=63.0
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcee---CCeee
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQ-SCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESEL---HGRQL 159 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l---~g~~i 159 (237)
....++.|||.||-.-+|.-+|+.++. ..|.|+..+| | +-+..|||.|.+.+.|.+.. +|||..+ +.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H---HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345678999999999999999999999 4666666532 2 35778999999999999999 8999876 67889
Q ss_pred EEEeCCC
Q 041633 160 KVLPKRT 166 (237)
Q Consensus 160 ~V~~a~~ 166 (237)
.+.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9998854
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.00025 Score=67.45 Aligned_cols=67 Identities=30% Similarity=0.494 Sum_probs=57.0
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHG 156 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g 156 (237)
.++||+||+..+.+.+|...|..+|.+..++|.... +++.+|+||+.|..++.+.+||.++...+.|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 479999999999999999999999999888877555 5889999999999999999999655444433
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.20 E-value=0.0029 Score=59.38 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=64.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+..|||..||..+++..+..+|...-.|+. |.|.+.++++.++.|||.|..++++..|+ --+.+.++.|.|+|...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3568999999999999999999998777766 77777778999999999999988888887 45556677788999854
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.17 E-value=0.038 Score=36.22 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=43.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcC---CCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSC---GTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QL 149 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l 149 (237)
..+|+|.++. +.+.++|+.||..| .....|.++.|. .|-|.|.+...|.+|| .|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4689999996 46778899999998 134688888764 5889999999999998 44
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.0023 Score=61.45 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=66.1
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....+++||+|||...+++.+|+..|..+|.|..|.|-..+-+.-..|+||.|.+...+..|+ ++.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345678999999999999999999999999999998866554555779999999999999998 8888887644555544
Q ss_pred C
Q 041633 164 K 164 (237)
Q Consensus 164 a 164 (237)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 127
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.86 E-value=0.044 Score=41.91 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=54.6
Q ss_pred ccCCCCeEEEecCCCCCCH-H---HHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeee
Q 041633 85 EEADSRSVFVGNVDYACTP-E---EVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQL 159 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~-~---~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i 159 (237)
.+.+..+|.|.=|..++.- + .+...++.||+|.+|.+.. +-.|.|+|.+..+|-.|+ +++. ..-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4566789999877666532 3 3456678899999998853 567999999999999999 6664 4556667
Q ss_pred EEEeC
Q 041633 160 KVLPK 164 (237)
Q Consensus 160 ~V~~a 164 (237)
.+.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 77664
No 128
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.73 E-value=0.036 Score=47.16 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCC--CCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 104 EEVQQHFQSCGTVNRVTILTDKF--GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+++..+++||.|..|.|-..++ -.-.--.||+|...++|.+|+ -|||..|+||.++-.+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35667789999999887765552 122334799999999999999 89999999998775543
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.38 E-value=0.1 Score=36.30 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=38.9
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN 150 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~ 150 (237)
+-.||. .|..+...+|..+|+.||.| .|.++.+ ..|||.....+.|..++ .+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 345554 99999999999999999987 4555544 47999999999999988 554
No 130
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.24 E-value=0.011 Score=53.24 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=59.1
Q ss_pred CCeEEEecCCCCC-CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYAC-TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~-t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
.+.|-+.-+|+.. +-.+|..+|.+||.|..|.+-.. .-.|.|+|.+...|-.|...++..|++|.|+|.|-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3445555556553 66899999999999999988543 3568999999999988888999999999999999865
No 131
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.19 Score=44.70 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=47.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHh
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTV-NRVTILTDKFGQPKGFAYVEFLEIDAVQEALQL 149 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l 149 (237)
-.+.|=|-++|.....++|...|..|+.- -.|.|+.+ -.||-.|.+...|..||.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 46788899999998889999999999743 57777765 4799999999999999966
No 132
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.74 E-value=0.019 Score=49.65 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=59.4
Q ss_pred CCeEEEecCCCCCCHHHH---HHHhhcCCCeeEEEEeeCCC--CC--ceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 89 SRSVFVGNVDYACTPEEV---QQHFQSCGTVNRVTILTDKF--GQ--PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L---~~~F~~~G~i~~v~i~~~~~--g~--~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
.+-+||-+|+.....+.+ ..+|.+||.|..|.+..+.+ .. ..--++|+|...++|..|| ..+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 467888899877654443 47899999999998877652 11 1223799999999999999 8999999999877
Q ss_pred EEeCCC
Q 041633 161 VLPKRT 166 (237)
Q Consensus 161 V~~a~~ 166 (237)
..+..+
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 766544
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.68 E-value=0.072 Score=42.60 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=48.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhc-CCCe---eEEEEeeCC--C-CCceeEEEEEeCCHHHHHHHH-HhCCceeCC---
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQS-CGTV---NRVTILTDK--F-GQPKGFAYVEFLEIDAVQEAL-QLNESELHG--- 156 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~-~G~i---~~v~i~~~~--~-g~~~g~afV~f~~~~~a~~al-~l~g~~l~g--- 156 (237)
...+|.|++||++.|++++...+.. ++.. ..+.-.... . .....-|||.|.+.+++...+ .++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4579999999999999998887776 6654 233312222 1 223456999999999998888 899988743
Q ss_pred --eeeEEEeC
Q 041633 157 --RQLKVLPK 164 (237)
Q Consensus 157 --~~i~V~~a 164 (237)
.+..|.+|
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 34556666
No 134
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.48 E-value=0.044 Score=48.89 Aligned_cols=71 Identities=20% Similarity=0.409 Sum_probs=55.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCc-eeCCeeeEEEeCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNES-ELHGRQLKVLPKRT 166 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~-~l~g~~i~V~~a~~ 166 (237)
.++|++||.+.++..+|..+|...- ....-.++. .||+||.+.+..-|.+|+ .++++ .+.|+++.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4789999999999999999997542 111122332 689999999999999999 78876 47899999987743
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.28 E-value=0.64 Score=34.18 Aligned_cols=66 Identities=9% Similarity=0.156 Sum_probs=47.1
Q ss_pred CeEEEe-cCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCC
Q 041633 90 RSVFVG-NVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHG 156 (237)
Q Consensus 90 ~~ifV~-nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g 156 (237)
.+|.|- ..|..++.+.|..+.+.+- .|..++|+++.+ .++=.+.+.|.+...|.... .+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444444 4455556566765555554 567889988753 24667899999999999999 899998763
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.92 E-value=0.18 Score=40.55 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=44.0
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC--CceeCCeeeEEEeCCCC
Q 041633 102 TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN--ESELHGRQLKVLPKRTN 167 (237)
Q Consensus 102 t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~--g~~l~g~~i~V~~a~~~ 167 (237)
....|+.+|..|+.+..+.++. +-+-..|.|.+.+.|.+|. .|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999999887776653 2456889999999999999 788 89999999999999543
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.65 E-value=0.046 Score=51.21 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=62.6
Q ss_pred ccCcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeee
Q 041633 81 QASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQL 159 (237)
Q Consensus 81 ~~~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i 159 (237)
...+...+..++||+||...+..+-++.....+|-|.++... .|+|..|........|+ .++-..++|..+
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------KFGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------hhcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 334445567899999999999999999999999988777653 29999999999999999 788888888887
Q ss_pred EEEe
Q 041633 160 KVLP 163 (237)
Q Consensus 160 ~V~~ 163 (237)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 7765
No 138
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.75 E-value=1.7 Score=41.75 Aligned_cols=68 Identities=7% Similarity=0.165 Sum_probs=47.6
Q ss_pred eEEEecCC--CCCCHHHHHHHhhcCCCe-----eEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 91 SVFVGNVD--YACTPEEVQQHFQSCGTV-----NRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 91 ~ifV~nL~--~~~t~~~L~~~F~~~G~i-----~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
++|| |+- ..++...|..++..-+.| -.|.|. ..|.||+... ..|...+ .|++..+.|+.|.|.
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcCh-hhHHHHHHHhccccccCCceEEE
Confidence 3554 443 357888888888765544 345654 4689999864 4466677 799999999999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
.+...
T Consensus 559 ~~~~~ 563 (629)
T PRK11634 559 LLGDA 563 (629)
T ss_pred ECCCC
Confidence 88533
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.62 E-value=0.41 Score=41.09 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=51.9
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCee-eEEEeC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQ-LKVLPK 164 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~-i~V~~a 164 (237)
=|-|-++|+... .-|..+|.+||.|...... ..-.+-+|.|.+..+|++||..+|+.|+|.. |-|..+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 344557777654 4577899999998765432 3457899999999999999999999998764 667765
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.62 E-value=1.1 Score=30.35 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHhhcCC-----CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 99 YACTPEEVQQHFQSCG-----TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 99 ~~~t~~~L~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..++..+|..++...+ .|-.|.|. ..|+||+-... .|..++ .|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578888888888764 44567774 45899998654 677788 89999999999999875
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.45 E-value=0.13 Score=49.71 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=60.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcee--CCeeeEEEeCCCC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESEL--HGRQLKVLPKRTN 167 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l--~g~~i~V~~a~~~ 167 (237)
+.++.|.+-..+...|..+|..||.+.+++.+++ -..|.|+|.+.+.|-.|+ +++|+.+ .|-+.+|.+|+..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555556677889999999999999988765 578999999999999999 8999875 5889999999864
No 142
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.32 E-value=1.4 Score=29.26 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=42.1
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 100 ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 100 ~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
.++-++++..+..|+. .+|..+++ | =||.|.+..+|+++. ..++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999974 24445543 3 589999999999999 78998888777654
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.13 E-value=0.15 Score=43.98 Aligned_cols=77 Identities=19% Similarity=0.102 Sum_probs=61.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCc-eeCCeeeEEEeC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNES-ELHGRQLKVLPK 164 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~-~l~g~~i~V~~a 164 (237)
...++|++++.+.+.+.++..+|..+|.+....+.... ...+++++++.|...+.+..||.+.+. .+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999899999999987776666544 678899999999999999999976664 455555444433
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.13 E-value=0.022 Score=50.19 Aligned_cols=77 Identities=18% Similarity=0.091 Sum_probs=59.5
Q ss_pred cccCcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 041633 80 NQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQL 159 (237)
Q Consensus 80 ~~~~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i 159 (237)
......+...++|+|++|+..+-..++...|..+|.|...++. .+-..-+|.|+|....+...|+.++|..+.-+..
T Consensus 142 ~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a---sk~~s~~c~~sf~~qts~~halr~~gre~k~qhs 218 (479)
T KOG4676|consen 142 AAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTA---SKSRSSSCSHSFRKQTSSKHALRSHGRERKRQHS 218 (479)
T ss_pred hhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh---ccCCCcchhhhHhhhhhHHHHHHhcchhhhhhhh
Confidence 3334444456899999999999999999999999998766653 2344667889999999999999888877654433
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.08 E-value=0.53 Score=43.49 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhh-cCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcee---C-CeeeE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQ-SCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESEL---H-GRQLK 160 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l---~-g~~i~ 160 (237)
..+++-|.|+|...|-..|.+.-. ..|.-..+.++.|- +....|||||.|.+++++..+. +.||+.+ + .+.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 456788889998877777666544 35666677777776 6778999999999999999999 8999764 3 45677
Q ss_pred EEeCCC
Q 041633 161 VLPKRT 166 (237)
Q Consensus 161 V~~a~~ 166 (237)
|.||+-
T Consensus 467 itYArI 472 (549)
T KOG4660|consen 467 ITYARI 472 (549)
T ss_pred eehhhh
Confidence 888864
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.85 E-value=1.5 Score=39.70 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=57.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHG 156 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g 156 (237)
...|+|-.+|..+|-.+|..|...+- .|..|+|+++... ++=.+.|.|.+..+|.... .+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998764 7899999996532 3456799999999999999 899998764
No 147
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.27 E-value=0.72 Score=42.79 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=52.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhc--CCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC--CceeCCeeeEEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQS--CGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN--ESELHGRQLKVL 162 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~--g~~l~g~~i~V~ 162 (237)
..+.|.++-||.++..++++.+|.. +-.+.+|.+-.+. -=||+|.+..+|+.|. .|. -++|-|+.|.-+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4678899999999999999999985 6777888875442 3589999999999987 332 245666665433
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.99 E-value=1.8 Score=40.38 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=60.4
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhhcC----CCeeEEEEeeCCCC-----------C---------------------
Q 041633 86 EADSRSVFVGNVDYA-CTPEEVQQHFQSC----GTVNRVTILTDKFG-----------Q--------------------- 128 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~-~t~~~L~~~F~~~----G~i~~v~i~~~~~g-----------~--------------------- 128 (237)
...+++|-|-|+.|+ +...+|..+|+.| |.|.+|.|.....| .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456889999999997 7889999999876 58899988533211 1
Q ss_pred ----------------ceeEEEEEeCCHHHHHHHH-HhCCceeC--CeeeEEEeC
Q 041633 129 ----------------PKGFAYVEFLEIDAVQEAL-QLNESELH--GRQLKVLPK 164 (237)
Q Consensus 129 ----------------~~g~afV~f~~~~~a~~al-~l~g~~l~--g~~i~V~~a 164 (237)
..=||.|+|.+...|.+.. .++|..+. +..|.+++-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1127899999999999888 89999986 455555554
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=82.73 E-value=0.13 Score=45.98 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=61.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+++-|.|+|+...++.|..++.+||.+..|..+... .-.-..-|+|.+.+.+..|| .+++..+....++|.|-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~--~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD--SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc--hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4668899999999999999999999999888664322 11233457899999999999 89999999999999986
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.21 E-value=1.5 Score=37.40 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=36.8
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCCCceeEEEEEeCCH
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTV-NRVTILTDKFGQPKGFAYVEFLEI 140 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~ 140 (237)
.-|||+|||.++.-.+|+..+.+.+.+ .++.+- .+.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 459999999999999999999988855 455552 3467899999764
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=77.16 E-value=0.52 Score=38.73 Aligned_cols=66 Identities=30% Similarity=0.443 Sum_probs=54.4
Q ss_pred CCCeEEEec----CCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCce
Q 041633 88 DSRSVFVGN----VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESE 153 (237)
Q Consensus 88 ~~~~ifV~n----L~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~ 153 (237)
...+++.|+ |...++.+.+...|++.|+|..+++..+.+|+++.+.|+++....+.-.++ ...+..
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 456888888 888899999999999999999999988888999999999988766666666 444443
No 152
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=73.05 E-value=3.2 Score=40.98 Aligned_cols=7 Identities=14% Similarity=0.377 Sum_probs=3.1
Q ss_pred HHHHhhc
Q 041633 106 VQQHFQS 112 (237)
Q Consensus 106 L~~~F~~ 112 (237)
|.++|..
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 3445543
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.57 E-value=10 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCeeEEEEee
Q 041633 104 EEVQQHFQSCGTVNRVTILT 123 (237)
Q Consensus 104 ~~L~~~F~~~G~i~~v~i~~ 123 (237)
.+|+++|+..|.|.-+-+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999997766543
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.79 E-value=9.9 Score=28.15 Aligned_cols=48 Identities=27% Similarity=0.411 Sum_probs=29.1
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeC-CHHHHHHHHHhCC
Q 041633 102 TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQLNE 151 (237)
Q Consensus 102 t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~-~~~~a~~al~l~g 151 (237)
+.+.|+..|+.|.++. ++.+.++. .+.|+++|.|. +-.-...|++|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHHHHH
Confidence 4578999999999875 44444443 46899999997 5555566665543
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.25 E-value=7 Score=33.61 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=57.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC--------CCCceeEEEEEeCCHHHHHHHH-----HhCC--c
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK--------FGQPKGFAYVEFLEIDAVQEAL-----QLNE--S 152 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~--------~g~~~g~afV~f~~~~~a~~al-----~l~g--~ 152 (237)
.+|.|...|+..+++-..+...|-+||+|++|.++.+. ..+......+.|-+.+.|.... .|.. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998765 2234566788998888776643 2222 3
Q ss_pred eeCCeeeEEEeC
Q 041633 153 ELHGRQLKVLPK 164 (237)
Q Consensus 153 ~l~g~~i~V~~a 164 (237)
.+....|.|.+.
T Consensus 94 ~L~S~~L~lsFV 105 (309)
T PF10567_consen 94 KLKSESLTLSFV 105 (309)
T ss_pred hcCCcceeEEEE
Confidence 456666776655
No 156
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.01 E-value=5 Score=32.09 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=51.6
Q ss_pred CeEEEecCCCCCCH-----HHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCe-eeEEE
Q 041633 90 RSVFVGNVDYACTP-----EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGR-QLKVL 162 (237)
Q Consensus 90 ~~ifV~nL~~~~t~-----~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~-~i~V~ 162 (237)
.++++-+|...+-. .....+|.+|-+.....+.+ +.++.-|.|.++..|..|. .++...|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 45667777665421 23345666666554444442 3566778999999999998 8999999988 88888
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
++....
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 887644
No 157
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.93 E-value=1.3 Score=41.03 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=53.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCee
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQ 158 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~ 158 (237)
.++|||.|++++++-.+|..++..+--+..+.+...- .....-+..|+|..--...-|+ +||++-+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 5789999999999999999999988766666554333 2455667889998777777777 78876665443
No 158
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=62.41 E-value=77 Score=31.94 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.8
Q ss_pred CceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 128 QPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 128 ~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
.-+||-||+=.....+..|| .+-+...+
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 35899999999999999999 66665555
No 159
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=56.19 E-value=18 Score=28.93 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=39.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCC--CceeEEEEEeCCHHHHHHHHHhC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG--QPKGFAYVEFLEIDAVQEALQLN 150 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g--~~~g~afV~f~~~~~a~~al~l~ 150 (237)
..+++|.. +....-++|..+-+ |.+..+.+-....+ ..+|-.||+|.+.+.|.+++.-+
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 35677776 22233344444444 77777776554444 67899999999999999887433
No 160
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=54.74 E-value=22 Score=23.58 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=42.8
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 104 EEVQQHFQSCG-TVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 104 ~~L~~~F~~~G-~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
++|.+.|...| .|..|.-+..+ ++.+-..-||+.........+ ++=..|.+..|+|...+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecCCC
Confidence 46777788777 67777777777 677778889988765443333 333568888999987753
No 161
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=53.67 E-value=78 Score=26.67 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 041633 40 LDEMKKRLKEM 50 (237)
Q Consensus 40 ~~~~~~~~~~~ 50 (237)
.+++-+.|+.|
T Consensus 148 ~~~Ll~ELekI 158 (244)
T PF04889_consen 148 TAALLRELEKI 158 (244)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 162
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.56 E-value=14 Score=31.72 Aligned_cols=34 Identities=12% Similarity=0.375 Sum_probs=27.4
Q ss_pred CCeEEEecCCCC------------CCHHHHHHHhhcCCCeeEEEEe
Q 041633 89 SRSVFVGNVDYA------------CTPEEVQQHFQSCGTVNRVTIL 122 (237)
Q Consensus 89 ~~~ifV~nL~~~------------~t~~~L~~~F~~~G~i~~v~i~ 122 (237)
..|||+.+||.. .++..|+..|..||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 468888888753 3677899999999999888774
No 163
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=52.01 E-value=66 Score=22.36 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH
Q 041633 91 SVFVGNVDYACTPEEVQQHFQS-CG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL 147 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al 147 (237)
.-|+--++...+..+|+..++. || .|..|..+..+. ...=|||++.....|....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~--~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK--GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CcEEEEEEeCCCCcHHHHH
Confidence 4555567889999999999997 66 567776655442 2345999998877776654
No 164
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.76 E-value=38 Score=31.56 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=44.0
Q ss_pred EEecCCCCCC---HHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeee
Q 041633 93 FVGNVDYACT---PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQL 159 (237)
Q Consensus 93 fV~nL~~~~t---~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i 159 (237)
+||||+.-.. ...+.++-.+||+|-.+++- ..-.|.-.+.+.|+.|+.-++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG--------~~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG--------SVPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec--------CceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 6788765433 24556666689999988872 22467888999999999888889888875
No 165
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=44.12 E-value=75 Score=28.87 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=30.0
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhhcC----CCeeEEEEee
Q 041633 86 EADSRSVFVGNVDYA-CTPEEVQQHFQSC----GTVNRVTILT 123 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~-~t~~~L~~~F~~~----G~i~~v~i~~ 123 (237)
..++.+|-|-||.|+ +...+|...|+.| |.|..|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 345788999999997 7889999999865 5777787743
No 166
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=43.52 E-value=32 Score=27.75 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK 125 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~ 125 (237)
.....+++.+++..++...+...|..+|.+..+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 446789999999999999999999999999777665554
No 167
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.00 E-value=47 Score=23.21 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=31.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL 138 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~ 138 (237)
..-||||+++..+.+.-........+.-.-+-+..+. ...||.|-++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--NEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--CCCCEEEEEeC
Confidence 5679999999998877666666554443333333222 26899998873
No 168
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=42.88 E-value=43 Score=22.38 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=41.2
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 104 EEVQQHFQSCG-TVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 104 ~~L~~~F~~~G-~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
.+|.+.|...| ++..++-+..+ ++.+-..-||+......... -++=+.|+++++.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCc
Confidence 45778888888 67888888777 46667778888765432222 244456789999988764
No 169
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.27 E-value=15 Score=33.08 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=46.8
Q ss_pred CCeEEEecCCCCCCHH--------HHHHHhhc--CCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH
Q 041633 89 SRSVFVGNVDYACTPE--------EVQQHFQS--CGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL 147 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~--------~L~~~F~~--~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al 147 (237)
.+.+|+.+.....+.. ++..+|.. .+.+..|+.-++. +..++|..|++|...+.+++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4567777777665444 89999998 5677778777776 6778999999999999999987
No 170
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.06 E-value=46 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=22.6
Q ss_pred EEEEeCCHHHHHHHHHhCCc--eeCCeeeEEEe
Q 041633 133 AYVEFLEIDAVQEALQLNES--ELHGRQLKVLP 163 (237)
Q Consensus 133 afV~f~~~~~a~~al~l~g~--~l~g~~i~V~~ 163 (237)
|.|+|.....|+..+.+..+ .+++..+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999855444 45666665553
No 171
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.58 E-value=10 Score=34.47 Aligned_cols=75 Identities=1% Similarity=-0.178 Sum_probs=56.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+.|+..||..+++.++.-+|..||-|..+.+.+.- .+-..-.+||+-.+ ..+..+| .+....+.+..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 356777889999999999999999998887765444 35556778887754 4466677 677777888888887764
No 172
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.80 E-value=67 Score=28.76 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=45.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCC-eeEEEEeeCC-C--CCceeEEEEEeCCHHHHHHHH-HhCCcee
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGT-VNRVTILTDK-F--GQPKGFAYVEFLEIDAVQEAL-QLNESEL 154 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~-i~~v~i~~~~-~--g~~~g~afV~f~~~~~a~~al-~l~g~~l 154 (237)
...|.|.+||+..++.+|.+...++-. +....+.... . ....+.|||.|...++..... ..+|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 468889999999999999887777542 2222332111 1 233677899999999877776 6788765
No 173
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.92 E-value=49 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=27.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRV 119 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v 119 (237)
....++|+-|||..+|++.|.++.++.|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 346799999999999999999999999855443
No 174
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.57 E-value=1.1e+02 Score=22.00 Aligned_cols=50 Identities=26% Similarity=0.213 Sum_probs=30.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCH
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEI 140 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 140 (237)
..-||||+++..+.+.--..+-+.++.-.-+ ++. .+....||.|-++...
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~av-mv~-~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVV-MAW-ATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEE-EEE-cCCCCCCcEEEecCCC
Confidence 5679999999888765544444444432222 222 2223349999888653
No 175
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=26.83 E-value=1.2e+02 Score=27.08 Aligned_cols=8 Identities=25% Similarity=0.493 Sum_probs=3.7
Q ss_pred eEEEecCC
Q 041633 91 SVFVGNVD 98 (237)
Q Consensus 91 ~ifV~nL~ 98 (237)
++.|+.+|
T Consensus 296 k~~igrvP 303 (465)
T KOG3973|consen 296 KLSIGRVP 303 (465)
T ss_pred ccccccCC
Confidence 44454444
No 176
>PF14893 PNMA: PNMA
Probab=23.44 E-value=77 Score=28.00 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=33.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhc-CCCeeEEEEeeCC--CCCceeEEEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDK--FGQPKGFAYVEFLE 139 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~-~G~i~~v~i~~~~--~g~~~g~afV~f~~ 139 (237)
..+.|.|.+||.++++.+|.+.+.. .-++-..++.... ......-|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 4688999999999999998877653 3233333443221 11224567888864
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.37 E-value=1.3e+02 Score=25.64 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=25.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEe
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 122 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~ 122 (237)
.....|+|||+.+|..-|..++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4567899999999999998888766554344443
No 178
>KOG3228 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.66 E-value=3e+02 Score=22.43 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 041633 37 VKELDEMKKRLKEM 50 (237)
Q Consensus 37 ~~e~~~~~~~~~~~ 50 (237)
+++.+++-+.++.+
T Consensus 125 eDdt~aLlaele~i 138 (226)
T KOG3228|consen 125 EDDTQALLAELENI 138 (226)
T ss_pred chHHHHHHHHHHHH
Confidence 33444444444433
No 179
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.45 E-value=88 Score=27.01 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=21.7
Q ss_pred EEEEeCCHHHHHHHHH-hCCceeCCeeeEEEeCC
Q 041633 133 AYVEFLEIDAVQEALQ-LNESELHGRQLKVLPKR 165 (237)
Q Consensus 133 afV~f~~~~~a~~al~-l~g~~l~g~~i~V~~a~ 165 (237)
|||+|.+..+|+.|+. +.... .+.++|..|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 7999999999999984 33322 2445666663
No 180
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=22.22 E-value=29 Score=32.83 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 041633 39 ELDEMKKRLKEMEEE 53 (237)
Q Consensus 39 e~~~~~~~~~~~e~~ 53 (237)
-+++.+.|+.-++.-
T Consensus 375 ~~kdf~~RL~yl~~~ 389 (556)
T PF05918_consen 375 KLKDFRERLQYLARG 389 (556)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655443
No 181
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.48 E-value=1.9e+02 Score=19.72 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=23.0
Q ss_pred CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCc
Q 041633 115 TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNES 152 (237)
Q Consensus 115 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~ 152 (237)
.|.++..+. ..+||-||+=.+..++..|+ .+.+.
T Consensus 33 ~I~Si~~~~----~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPD----SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-T----TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeC----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 455655543 36999999999999999999 66543
Done!