Query 041633
Match_columns 237
No_of_seqs 255 out of 2760
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 15:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 2E-22 6.9E-27 157.0 13.2 88 85-172 35-124 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 3.7E-22 1.3E-26 144.2 12.4 80 87-166 17-98 (99)
3 3q2s_C Cleavage and polyadenyl 99.8 1.5E-21 5E-26 161.7 8.8 79 88-166 67-149 (229)
4 2fy1_A RNA-binding motif prote 99.8 1.7E-20 5.8E-25 139.3 13.7 82 87-168 5-87 (116)
5 3s8s_A Histone-lysine N-methyl 99.8 1.3E-20 4.4E-25 138.7 12.8 80 87-166 4-85 (110)
6 2cqd_A RNA-binding region cont 99.8 3.7E-20 1.3E-24 137.1 14.5 84 83-167 11-96 (116)
7 3ex7_B RNA-binding protein 8A; 99.8 5.9E-21 2E-25 143.4 10.1 85 85-169 18-104 (126)
8 2dgo_A Cytotoxic granule-assoc 99.8 7.3E-20 2.5E-24 135.2 15.7 86 84-169 10-97 (115)
9 2lxi_A RNA-binding protein 10; 99.8 2.9E-21 9.9E-26 137.3 7.4 80 89-168 1-84 (91)
10 2dgs_A DAZ-associated protein 99.8 3.2E-20 1.1E-24 133.6 13.0 83 86-168 7-90 (99)
11 2dnz_A Probable RNA-binding pr 99.8 3.5E-20 1.2E-24 132.2 12.8 81 88-168 4-86 (95)
12 2do0_A HnRNP M, heterogeneous 99.8 1E-19 3.6E-24 134.1 15.8 83 86-168 12-95 (114)
13 1u6f_A Tcubp1, RNA-binding pro 99.8 3.2E-20 1.1E-24 141.6 13.4 85 84-168 37-123 (139)
14 1whw_A Hypothetical protein ri 99.8 3.2E-20 1.1E-24 133.5 12.6 82 87-168 6-89 (99)
15 3pgw_S U1-70K; protein-RNA com 99.8 9.4E-20 3.2E-24 164.0 18.3 82 87-168 100-183 (437)
16 2dnh_A Bruno-like 5, RNA bindi 99.8 5.3E-20 1.8E-24 133.7 13.2 84 85-168 11-98 (105)
17 2cq0_A Eukaryotic translation 99.8 4.8E-20 1.7E-24 133.5 12.9 84 85-168 11-96 (103)
18 2cpz_A CUG triplet repeat RNA- 99.8 7.1E-20 2.4E-24 135.3 14.0 86 83-168 19-106 (115)
19 2do4_A Squamous cell carcinoma 99.8 5.7E-20 2E-24 132.4 12.9 84 85-168 13-97 (100)
20 3md1_A Nuclear and cytoplasmic 99.8 5.8E-20 2E-24 127.7 12.4 79 89-167 1-81 (83)
21 2dnm_A SRP46 splicing factor; 99.8 2.3E-20 7.7E-25 135.3 10.7 84 85-168 9-94 (103)
22 2d9p_A Polyadenylate-binding p 99.8 6E-20 2E-24 133.1 12.9 83 85-168 11-94 (103)
23 1x5t_A Splicing factor 3B subu 99.8 3.6E-20 1.2E-24 132.4 11.5 81 88-168 4-87 (96)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.3E-20 1.1E-24 134.1 11.3 82 87-168 10-93 (102)
25 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.9E-20 1.3E-24 129.7 11.4 80 88-167 5-86 (87)
26 1x5u_A Splicing factor 3B subu 99.8 4.4E-20 1.5E-24 134.2 12.0 84 85-168 11-96 (105)
27 2lkz_A RNA-binding protein 5; 99.8 1.1E-20 3.8E-25 135.4 8.5 80 87-166 7-94 (95)
28 2dng_A Eukaryotic translation 99.8 9.7E-20 3.3E-24 132.0 13.6 82 86-168 12-94 (103)
29 3ucg_A Polyadenylate-binding p 99.8 4.5E-20 1.5E-24 130.0 11.4 82 89-170 6-88 (89)
30 2dhg_A TRNA selenocysteine ass 99.8 5.6E-20 1.9E-24 133.4 12.1 82 87-168 7-91 (104)
31 3s7r_A Heterogeneous nuclear r 99.8 6.7E-20 2.3E-24 128.7 11.8 80 85-164 7-87 (87)
32 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.1E-20 1.4E-24 145.4 11.8 85 86-170 69-155 (165)
33 2cph_A RNA binding motif prote 99.8 7.5E-20 2.6E-24 133.3 12.3 85 84-168 10-98 (107)
34 1p27_B RNA-binding protein 8A; 99.8 5.1E-20 1.7E-24 134.0 11.2 83 86-168 20-104 (106)
35 1x4h_A RNA-binding protein 28; 99.8 9.2E-20 3.2E-24 133.7 12.6 84 85-168 11-102 (111)
36 1wi8_A EIF-4B, eukaryotic tran 99.8 8.3E-20 2.8E-24 132.6 12.1 81 87-168 13-95 (104)
37 3p5t_L Cleavage and polyadenyl 99.8 1.1E-20 3.6E-25 133.9 7.1 79 90-168 2-84 (90)
38 2cq3_A RNA-binding protein 9; 99.8 2.3E-19 7.9E-24 129.9 14.3 84 84-168 10-94 (103)
39 4f25_A Polyadenylate-binding p 99.8 7.3E-20 2.5E-24 135.5 11.4 79 89-168 5-84 (115)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.6E-20 1.9E-24 128.4 10.1 79 87-165 5-85 (85)
41 2dgp_A Bruno-like 4, RNA bindi 99.8 6.4E-20 2.2E-24 133.5 10.8 85 84-168 8-97 (106)
42 1x5s_A Cold-inducible RNA-bind 99.8 6.7E-20 2.3E-24 132.5 10.8 82 87-168 10-93 (102)
43 2cpe_A RNA-binding protein EWS 99.8 1E-19 3.5E-24 134.0 12.0 84 85-168 11-104 (113)
44 2cqc_A Arginine/serine-rich sp 99.8 9.8E-20 3.3E-24 129.8 11.5 81 86-166 12-94 (95)
45 1s79_A Lupus LA protein; RRM, 99.8 3.2E-20 1.1E-24 135.0 9.0 80 87-166 9-88 (103)
46 2x1f_A MRNA 3'-END-processing 99.8 1E-19 3.5E-24 130.2 11.6 80 88-167 1-82 (96)
47 2ywk_A Putative RNA-binding pr 99.8 8.7E-20 3E-24 130.1 10.9 81 86-166 13-94 (95)
48 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.3E-19 8E-24 129.9 13.2 84 84-168 10-94 (103)
49 2div_A TRNA selenocysteine ass 99.8 1.1E-19 3.8E-24 130.6 11.3 81 87-167 7-94 (99)
50 1x4b_A Heterogeneous nuclear r 99.8 9.2E-20 3.2E-24 134.9 11.1 82 87-168 25-107 (116)
51 1oo0_B CG8781-PA, drosophila Y 99.8 9.5E-20 3.2E-24 133.5 10.8 83 86-168 23-107 (110)
52 2cqg_A TDP-43, TAR DNA-binding 99.8 3.3E-19 1.1E-23 129.1 13.6 84 84-168 10-94 (103)
53 1wez_A HnRNP H', FTP-3, hetero 99.8 9.1E-20 3.1E-24 132.3 10.3 80 87-167 13-92 (102)
54 2e5h_A Zinc finger CCHC-type a 99.8 1.5E-19 5.1E-24 128.6 11.1 80 86-165 13-94 (94)
55 2cpf_A RNA binding motif prote 99.8 2.2E-19 7.5E-24 128.8 12.0 81 88-168 4-89 (98)
56 2la6_A RNA-binding protein FUS 99.8 2E-19 6.8E-24 129.4 11.6 80 86-165 10-99 (99)
57 2jwn_A Embryonic polyadenylate 99.8 2.3E-19 7.9E-24 134.2 12.3 83 88-170 35-118 (124)
58 2m2b_A RNA-binding protein 10; 99.8 4.3E-20 1.5E-24 139.8 8.3 85 83-168 17-109 (131)
59 2jrs_A RNA-binding protein 39; 99.8 1.6E-19 5.5E-24 132.3 10.9 85 83-167 20-106 (108)
60 1x4c_A Splicing factor, argini 99.8 5E-19 1.7E-23 129.5 13.0 78 87-170 13-96 (108)
61 3ulh_A THO complex subunit 4; 99.8 3.8E-19 1.3E-23 129.6 12.1 80 86-165 26-106 (107)
62 2khc_A Testis-specific RNP-typ 99.8 1.9E-19 6.4E-24 133.6 10.5 81 85-165 36-118 (118)
63 2dgu_A Heterogeneous nuclear r 99.8 6.1E-19 2.1E-23 127.8 12.9 77 87-170 9-86 (103)
64 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.9E-24 126.6 9.6 81 88-168 3-86 (88)
65 2cpy_A RNA-binding protein 12; 99.8 1.2E-19 4.1E-24 134.1 9.2 82 86-167 12-94 (114)
66 2dgw_A Probable RNA-binding pr 99.8 6.1E-19 2.1E-23 124.8 12.6 80 87-167 8-87 (91)
67 2dh8_A DAZ-associated protein 99.8 2.2E-19 7.5E-24 130.5 10.4 84 85-168 12-96 (105)
68 2rs2_A Musashi-1, RNA-binding 99.8 3E-19 1E-23 131.0 11.2 86 83-168 19-105 (109)
69 3ns6_A Eukaryotic translation 99.8 3.1E-20 1.1E-24 134.2 5.8 79 88-166 5-92 (100)
70 1x4a_A Splicing factor, argini 99.8 1.1E-18 3.7E-23 127.7 13.8 81 85-167 18-99 (109)
71 2mss_A Protein (musashi1); RNA 99.8 9.8E-20 3.3E-24 124.3 7.6 74 91-164 1-75 (75)
72 2dgv_A HnRNP M, heterogeneous 99.8 5E-19 1.7E-23 125.4 11.6 81 87-168 6-87 (92)
73 2cqp_A RNA-binding protein 12; 99.8 2.1E-19 7.3E-24 128.9 9.7 81 87-167 13-95 (98)
74 2kxn_B Transformer-2 protein h 99.8 2.5E-19 8.5E-24 135.4 9.9 84 85-168 42-127 (129)
75 2dis_A Unnamed protein product 99.8 5.5E-19 1.9E-23 129.2 11.4 81 88-168 7-93 (109)
76 2cq4_A RNA binding motif prote 99.8 3.5E-20 1.2E-24 136.8 5.1 81 87-167 23-104 (114)
77 3n9u_C Cleavage and polyadenyl 99.8 5E-19 1.7E-23 138.1 11.8 79 88-166 54-136 (156)
78 2hgn_A Heterogeneous nuclear r 99.8 3.4E-20 1.1E-24 141.9 4.9 81 86-167 43-123 (139)
79 2fc9_A NCL protein; structure 99.8 8.9E-19 3E-23 126.4 12.0 80 85-167 11-91 (101)
80 2dgx_A KIAA0430 protein; RRM d 99.8 5.6E-19 1.9E-23 126.5 10.7 79 88-168 8-91 (96)
81 1wg5_A Heterogeneous nuclear r 99.8 7.6E-19 2.6E-23 127.7 11.4 81 87-167 13-94 (104)
82 2err_A Ataxin-2-binding protei 99.8 4.3E-19 1.5E-23 130.1 10.1 85 82-167 22-107 (109)
83 1p1t_A Cleavage stimulation fa 99.8 1.8E-19 6E-24 130.6 7.9 81 88-168 7-89 (104)
84 2cpi_A CCR4-NOT transcription 99.8 8.1E-19 2.8E-23 129.0 11.4 83 86-168 12-102 (111)
85 2db1_A Heterogeneous nuclear r 99.8 5.7E-19 2E-23 131.4 10.4 81 86-166 14-97 (118)
86 2fc8_A NCL protein; structure 99.8 2.1E-18 7E-23 124.6 12.7 81 85-168 11-93 (102)
87 2kn4_A Immunoglobulin G-bindin 99.8 7E-19 2.4E-23 137.0 10.9 82 87-168 68-151 (158)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.6E-19 5.6E-24 130.3 6.8 81 86-167 16-98 (100)
89 2ek1_A RNA-binding protein 12; 99.8 4.1E-19 1.4E-23 126.6 8.3 79 88-166 14-94 (95)
90 2lea_A Serine/arginine-rich sp 99.8 3.2E-19 1.1E-23 135.9 8.2 84 86-169 44-129 (135)
91 1x4e_A RNA binding motif, sing 99.8 1.4E-19 4.8E-24 126.4 5.7 78 88-165 4-83 (85)
92 1sjq_A Polypyrimidine tract-bi 99.8 7.1E-19 2.4E-23 127.9 9.5 77 87-168 14-93 (105)
93 2cq1_A PTB-like protein L; RRM 99.8 3.1E-18 1.1E-22 124.0 12.7 79 85-168 11-92 (101)
94 2kt5_A RNA and export factor-b 99.8 2.4E-18 8.3E-23 128.8 12.5 82 86-167 32-114 (124)
95 2dnn_A RNA-binding protein 12; 99.8 1.2E-18 4E-23 128.0 10.2 77 89-166 16-92 (109)
96 2hgl_A HNRPF protein, heteroge 99.8 7.9E-19 2.7E-23 133.8 9.6 81 86-166 41-124 (136)
97 1x5o_A RNA binding motif, sing 99.8 2E-18 7E-23 127.2 11.5 83 85-167 21-112 (114)
98 2dnq_A RNA-binding protein 4B; 99.8 3E-18 1E-22 121.1 11.9 75 87-168 6-81 (90)
99 2dgt_A RNA-binding protein 30; 99.8 4E-18 1.4E-22 120.9 12.4 76 86-168 7-83 (92)
100 2ki2_A SS-DNA binding protein 99.8 2.1E-19 7.2E-24 126.9 5.2 78 90-168 2-81 (90)
101 2cpd_A Apobec-1 stimulating pr 99.8 6.1E-18 2.1E-22 121.6 12.9 77 85-168 11-90 (99)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.2E-19 1.5E-23 121.5 6.4 74 90-164 1-76 (77)
103 2dnp_A RNA-binding protein 14; 99.8 3.6E-18 1.2E-22 120.6 11.3 74 87-167 7-81 (90)
104 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.4E-18 8.2E-23 131.0 11.1 80 85-164 59-140 (140)
105 2jvo_A Nucleolar protein 3; nu 99.8 2.4E-18 8.2E-23 126.0 10.5 81 81-168 23-104 (108)
106 1iqt_A AUF1, heterogeneous nuc 99.8 3.2E-19 1.1E-23 121.6 5.2 74 91-164 1-75 (75)
107 2nlw_A Eukaryotic translation 99.8 1.1E-18 3.9E-23 127.0 8.3 79 87-166 13-99 (105)
108 1x4g_A Nucleolysin TIAR; struc 99.8 4.5E-18 1.6E-22 124.4 11.5 78 86-168 22-100 (109)
109 1x4d_A Matrin 3; structural ge 99.8 1.5E-18 5E-23 125.8 8.7 76 87-167 13-92 (102)
110 3r27_A HnRNP L, heterogeneous 99.8 2.6E-18 8.9E-23 123.7 9.7 77 86-167 18-97 (100)
111 2cpj_A Non-POU domain-containi 99.8 4.9E-18 1.7E-22 122.0 11.1 79 85-168 11-90 (99)
112 2jvr_A Nucleolar protein 3; RN 99.8 1.8E-18 6.2E-23 127.3 8.8 78 88-168 27-106 (111)
113 2lmi_A GRSF-1, G-rich sequence 99.8 7.2E-19 2.5E-23 128.4 6.6 80 87-166 9-91 (107)
114 2hvz_A Splicing factor, argini 99.8 2.6E-18 9E-23 123.9 9.5 75 90-168 1-76 (101)
115 2a3j_A U1 small nuclear ribonu 99.8 2.9E-18 9.9E-23 129.2 10.0 80 86-167 26-110 (127)
116 1wel_A RNA-binding protein 12; 99.8 1.1E-18 3.6E-23 130.8 7.5 81 86-166 22-103 (124)
117 2ytc_A PRE-mRNA-splicing facto 99.8 4.2E-18 1.4E-22 118.8 10.0 76 85-165 8-85 (85)
118 1why_A Hypothetical protein ri 99.8 5E-18 1.7E-22 121.6 10.6 77 87-168 15-94 (97)
119 2lcw_A RNA-binding protein FUS 99.6 5.1E-20 1.7E-24 136.4 0.0 81 87-167 5-95 (116)
120 2cpx_A Hypothetical protein FL 99.8 4.5E-18 1.5E-22 125.4 10.5 80 86-168 22-106 (115)
121 2ad9_A Polypyrimidine tract-bi 99.8 4.5E-18 1.6E-22 126.5 10.4 77 87-168 29-108 (119)
122 2kvi_A Nuclear polyadenylated 99.8 2.3E-18 7.9E-23 123.2 8.5 75 87-168 8-84 (96)
123 2dha_A FLJ20171 protein; RRM d 99.8 1.6E-18 5.5E-23 129.8 7.9 80 87-166 21-104 (123)
124 2krb_A Eukaryotic translation 99.8 1.2E-18 4.1E-23 120.7 6.6 72 89-161 1-80 (81)
125 2wbr_A GW182, gawky, LD47780P; 99.8 3.1E-18 1.1E-22 119.7 8.5 73 88-165 6-79 (89)
126 1fj7_A Nucleolin RBD1, protein 99.8 3.7E-19 1.2E-23 128.4 3.9 81 87-168 15-96 (101)
127 1wex_A Hypothetical protein (r 99.8 8.8E-18 3E-22 122.2 11.3 77 86-167 12-91 (104)
128 3beg_B Splicing factor, argini 99.8 3.3E-18 1.1E-22 126.6 9.0 75 88-168 15-95 (115)
129 2xnq_A Nuclear polyadenylated 99.7 1.1E-17 3.9E-22 120.0 11.3 77 84-167 17-95 (97)
130 2cqh_A IGF-II mRNA-binding pro 99.7 7.7E-18 2.6E-22 119.6 10.2 75 87-167 6-83 (93)
131 2la4_A Nuclear and cytoplasmic 99.7 5.6E-18 1.9E-22 122.1 9.4 75 87-166 25-100 (101)
132 1fjc_A Nucleolin RBD2, protein 99.7 3.4E-18 1.1E-22 122.1 7.9 79 86-168 13-92 (96)
133 2e5j_A Methenyltetrahydrofolat 99.7 9.1E-18 3.1E-22 120.3 10.2 79 86-168 16-95 (97)
134 2xs2_A Deleted in azoospermia- 99.7 2.4E-18 8.3E-23 124.3 7.0 79 88-167 8-86 (102)
135 1nu4_A U1A RNA binding domain; 99.7 2.8E-18 9.7E-23 122.6 7.3 80 87-168 6-90 (97)
136 1wf1_A RNA-binding protein RAL 99.7 1.6E-17 5.5E-22 121.7 11.6 74 87-167 25-100 (110)
137 3egn_A RNA-binding protein 40; 99.7 5.3E-18 1.8E-22 130.0 9.3 84 86-169 42-132 (143)
138 2e5g_A U6 snRNA-specific termi 99.7 2.4E-17 8.1E-22 117.4 12.0 75 88-167 7-82 (94)
139 2hgm_A HNRPF protein, heteroge 99.7 3.6E-18 1.2E-22 128.4 7.9 78 87-165 40-119 (126)
140 4f02_A Polyadenylate-binding p 99.7 2E-17 7E-22 134.9 12.3 81 87-167 13-95 (213)
141 3lqv_A PRE-mRNA branch site pr 99.7 1.7E-17 5.7E-22 122.4 10.0 78 88-167 7-85 (115)
142 1x4f_A Matrin 3; structural ge 99.7 2E-17 6.9E-22 121.6 10.4 77 86-167 22-102 (112)
143 1l3k_A Heterogeneous nuclear r 99.7 3.6E-17 1.2E-21 130.7 12.2 82 87-168 102-184 (196)
144 1x5p_A Negative elongation fac 99.7 1E-16 3.4E-21 114.8 12.8 76 86-168 12-88 (97)
145 1whx_A Hypothetical protein ri 99.7 9.8E-18 3.4E-22 123.3 7.5 75 88-167 9-84 (111)
146 2i2y_A Fusion protein consists 99.7 2.2E-17 7.6E-22 127.5 9.6 79 85-167 69-148 (150)
147 2f3j_A RNA and export factor b 99.7 2.3E-17 7.9E-22 131.2 9.9 81 87-167 86-167 (177)
148 1l3k_A Heterogeneous nuclear r 99.7 4.7E-17 1.6E-21 130.0 11.6 81 87-167 11-92 (196)
149 1fxl_A Paraneoplastic encephal 99.7 9E-17 3.1E-21 124.8 12.7 79 89-167 2-82 (167)
150 3md3_A Nuclear and cytoplasmic 99.7 1.1E-16 3.7E-21 124.2 12.7 81 85-165 83-165 (166)
151 3md3_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 124.4 12.1 79 90-168 1-80 (166)
152 2qfj_A FBP-interacting repress 99.7 1.2E-16 4.2E-21 129.5 12.8 82 87-168 123-206 (216)
153 1b7f_A Protein (SXL-lethal pro 99.7 6.7E-17 2.3E-21 125.9 10.5 80 88-167 2-83 (168)
154 2cjk_A Nuclear polyadenylated 99.7 4.3E-17 1.5E-21 127.0 8.7 80 88-167 86-166 (167)
155 1wg1_A KIAA1579 protein, homol 99.7 8.2E-17 2.8E-21 113.2 9.2 74 88-167 4-78 (88)
156 2voo_A Lupus LA protein; RNA-b 99.7 1.7E-16 5.7E-21 127.9 12.0 79 88-166 108-186 (193)
157 2e44_A Insulin-like growth fac 99.7 7.1E-17 2.4E-21 115.1 8.8 78 87-167 13-92 (96)
158 2j8a_A Histone-lysine N-methyl 99.7 1.1E-16 3.7E-21 119.3 9.7 77 90-166 3-95 (136)
159 3d2w_A TAR DNA-binding protein 99.7 9.1E-17 3.1E-21 113.5 8.8 76 87-167 9-84 (89)
160 1wf0_A TDP-43, TAR DNA-binding 99.7 7E-17 2.4E-21 113.5 8.0 76 88-168 4-79 (88)
161 2g4b_A Splicing factor U2AF 65 99.7 1.9E-16 6.5E-21 123.9 11.3 78 87-164 92-171 (172)
162 2cq2_A Hypothetical protein LO 99.7 6.7E-17 2.3E-21 119.1 7.9 76 87-167 23-106 (114)
163 2yh0_A Splicing factor U2AF 65 99.7 2.8E-16 9.5E-21 125.7 12.2 82 87-168 112-195 (198)
164 4f02_A Polyadenylate-binding p 99.7 2.6E-16 9E-21 128.3 11.0 79 88-167 102-181 (213)
165 2dnl_A Cytoplasmic polyadenyla 99.7 3.3E-16 1.1E-20 115.5 10.5 76 87-165 6-86 (114)
166 3zzy_A Polypyrimidine tract-bi 99.7 3.8E-16 1.3E-20 117.6 10.8 74 90-167 29-106 (130)
167 3nmr_A Cugbp ELAV-like family 99.7 3.8E-16 1.3E-20 122.3 11.0 79 87-165 93-175 (175)
168 2hzc_A Splicing factor U2AF 65 99.7 2.1E-16 7.3E-21 110.4 8.5 71 88-163 5-86 (87)
169 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-16 1.6E-20 121.4 11.1 77 89-168 46-125 (164)
170 3tyt_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 126.6 10.5 76 88-167 3-80 (205)
171 1b7f_A Protein (SXL-lethal pro 99.7 8.7E-16 3E-20 119.6 11.8 79 86-164 86-168 (168)
172 2diu_A KIAA0430 protein; struc 99.6 5.9E-16 2E-20 109.2 8.9 71 88-167 7-84 (96)
173 2qfj_A FBP-interacting repress 99.6 5.6E-16 1.9E-20 125.6 10.0 80 88-167 27-108 (216)
174 2bz2_A Negative elongation fac 99.6 8E-16 2.7E-20 114.8 9.8 76 86-168 36-112 (121)
175 2pe8_A Splicing factor 45; RRM 99.6 2.3E-15 8E-20 109.5 11.9 80 87-166 6-93 (105)
176 1fxl_A Paraneoplastic encephal 99.6 1.4E-15 4.8E-20 118.0 11.3 78 87-164 86-167 (167)
177 2e5i_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 113.9 10.5 72 91-167 27-102 (124)
178 2cjk_A Nuclear polyadenylated 99.6 5.1E-16 1.7E-20 120.9 8.1 78 88-166 2-80 (167)
179 1fje_B Nucleolin RBD12, protei 99.6 1.3E-15 4.6E-20 119.6 9.8 77 87-167 97-174 (175)
180 3nmr_A Cugbp ELAV-like family 99.6 1.8E-15 6E-20 118.5 10.1 80 88-167 2-88 (175)
181 3u1l_A PRE-mRNA-splicing facto 99.6 7.7E-16 2.6E-20 127.5 8.1 79 86-169 131-231 (240)
182 3pgw_A U1-A; protein-RNA compl 99.6 2.6E-15 8.9E-20 126.9 11.4 80 86-167 6-90 (282)
183 3smz_A Protein raver-1, ribonu 99.6 5.3E-15 1.8E-19 125.1 12.7 83 86-168 181-265 (284)
184 2ghp_A U4/U6 snRNA-associated 99.6 3.6E-15 1.2E-19 126.7 10.6 82 86-167 207-291 (292)
185 3smz_A Protein raver-1, ribonu 99.6 1.9E-14 6.3E-19 121.8 12.7 80 88-167 94-175 (284)
186 2adc_A Polypyrimidine tract-bi 99.6 6.8E-15 2.3E-19 121.1 9.7 77 87-167 32-110 (229)
187 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-14 4.9E-19 122.4 11.2 76 86-165 204-281 (282)
188 1fje_B Nucleolin RBD12, protei 99.6 1.1E-15 3.6E-20 120.2 3.4 82 86-167 10-91 (175)
189 2dit_A HIV TAT specific factor 99.6 6.5E-14 2.2E-18 102.8 12.6 79 86-167 12-102 (112)
190 1jmt_A Splicing factor U2AF 35 99.5 3.8E-15 1.3E-19 108.2 5.2 71 94-164 20-103 (104)
191 1qm9_A Polypyrimidine tract-bi 99.5 7.6E-15 2.6E-19 117.7 7.5 76 88-167 2-79 (198)
192 3tyt_A Heterogeneous nuclear r 99.5 1.4E-14 4.9E-19 117.6 8.6 77 87-164 121-204 (205)
193 3sde_A Paraspeckle component 1 99.5 2.3E-14 7.9E-19 120.3 10.0 76 86-166 19-95 (261)
194 2ghp_A U4/U6 snRNA-associated 99.5 2.6E-14 8.7E-19 121.4 9.9 81 88-168 116-198 (292)
195 3sde_A Paraspeckle component 1 99.5 4.1E-14 1.4E-18 118.7 10.6 80 88-167 95-179 (261)
196 2g4b_A Splicing factor U2AF 65 99.5 4.4E-14 1.5E-18 110.3 9.6 75 88-167 3-88 (172)
197 1qm9_A Polypyrimidine tract-bi 99.5 2.5E-14 8.5E-19 114.7 8.1 77 87-167 118-197 (198)
198 2adc_A Polypyrimidine tract-bi 99.5 5.1E-14 1.8E-18 115.8 9.9 77 87-167 149-228 (229)
199 2yh0_A Splicing factor U2AF 65 99.5 6.7E-14 2.3E-18 111.7 9.4 76 88-168 3-89 (198)
200 3v4m_A Splicing factor U2AF 65 99.5 7.7E-14 2.6E-18 101.4 8.8 80 87-166 3-96 (105)
201 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.5E-12 5.1E-17 93.7 12.6 74 89-168 10-91 (100)
202 3ue2_A Poly(U)-binding-splicin 99.5 3.6E-13 1.2E-17 99.9 9.6 79 88-166 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.4 1.6E-12 5.4E-17 113.1 9.3 75 86-165 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.8E-11 6E-16 90.2 9.9 76 87-165 5-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 7.9E-11 2.7E-15 82.3 9.1 74 87-167 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.1 4E-10 1.4E-14 83.4 8.9 75 86-165 15-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.0 9.1E-10 3.1E-14 77.3 7.0 73 86-165 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 6.5E-09 2.2E-13 84.7 8.0 65 101-165 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 4.7E-07 1.6E-11 64.9 8.8 72 88-164 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.0 0.00012 4E-09 51.9 11.8 73 88-167 7-84 (104)
211 1wey_A Calcipressin 1; structu 97.8 0.00012 4E-09 52.1 8.2 74 89-167 5-84 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.3 0.0015 5E-08 47.7 8.8 71 88-164 23-94 (119)
213 1uw4_A UPF3X; nonsense mediate 97.3 0.0024 8.2E-08 44.4 9.0 66 90-155 2-71 (91)
214 1whv_A Poly(A)-specific ribonu 97.2 0.0016 5.5E-08 45.6 7.3 52 90-149 17-69 (100)
215 3ctr_A Poly(A)-specific ribonu 97.0 0.0012 4E-08 46.4 5.3 53 91-150 7-60 (101)
216 3p3d_A Nucleoporin 53; structu 96.6 0.0021 7.3E-08 47.5 4.3 76 89-165 7-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.6 0.0014 4.8E-08 58.8 3.8 61 89-154 53-113 (464)
218 2l08_A Regulator of nonsense t 95.7 0.015 5.3E-07 40.6 4.7 67 89-155 9-79 (97)
219 2kn4_A Immunoglobulin G-bindin 95.0 0.021 7.1E-07 43.1 4.1 34 118-152 2-36 (158)
220 2i2y_A Fusion protein consists 93.6 0.024 8.3E-07 42.4 1.6 39 127-166 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 87.4 1.6 5.6E-05 39.4 7.7 53 90-150 441-494 (507)
222 4f25_A Polyadenylate-binding p 71.3 0.98 3.4E-05 31.8 0.4 19 87-105 95-113 (115)
223 4e8u_A Putative uncharacterize 51.3 71 0.0024 24.3 7.6 58 91-150 14-83 (172)
224 2g0c_A ATP-dependent RNA helic 48.9 44 0.0015 21.1 5.5 67 91-165 2-75 (76)
225 3swz_A Steroid 17-alpha-hydrox 31.2 61 0.0021 28.0 5.1 59 91-157 16-78 (494)
226 3fut_A Dimethyladenosine trans 25.3 71 0.0024 25.9 4.2 32 89-121 110-141 (271)
227 2xze_Q Charged multivesicular 25.0 15 0.00052 20.9 -0.0 15 36-50 24-38 (40)
228 3tbg_A Cytochrome P450 2D6; mo 23.1 32 0.0011 29.5 1.7 56 93-156 20-78 (479)
229 3uzu_A Ribosomal RNA small sub 20.7 36 0.0012 27.8 1.5 33 90-122 115-147 (279)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.89 E-value=2e-22 Score=157.02 Aligned_cols=88 Identities=22% Similarity=0.368 Sum_probs=80.5
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
...+.++|||+|||+++|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||++.|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33467999999999999999999999999999999999998 7999999999999999999999 799999999999999
Q ss_pred eCCCCCCCCC
Q 041633 163 PKRTNVPGMK 172 (237)
Q Consensus 163 ~a~~~~~~~~ 172 (237)
+|++..+...
T Consensus 115 ~a~~~~~~~~ 124 (156)
T 1h2v_Z 115 WDAGFKEGRQ 124 (156)
T ss_dssp EESCCCTTCC
T ss_pred ECCCCCCcCC
Confidence 9987654433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=144.23 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=76.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
-.+++|||+|||+++|+++|+.+|++||.|..|+|++++ +|+++|||||+|.+.++|.+|+ .||+..|.|++|+|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 7999999999999999999999 89999999999999999
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=1.5e-21 Score=161.66 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..++|||+||++++|+++|+.+|++|| .|..|+|+.++ +++++|||||+|.+.++|++|| .||++.|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999998 8999999999999999999999 7999999999999999
Q ss_pred CCC
Q 041633 164 KRT 166 (237)
Q Consensus 164 a~~ 166 (237)
|+.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 4
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=139.26 Aligned_cols=82 Identities=21% Similarity=0.477 Sum_probs=77.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++|+++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|++|+ .||+..|.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3478999999999999999999999999999999999989999999999999999999999 799999999999999998
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
...
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=138.69 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=76.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|+ .||++.|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 357899999999999999999999999999999999998 7999999999999999999999 89999999999999999
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 6
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.7e-20 Score=137.09 Aligned_cols=84 Identities=23% Similarity=0.471 Sum_probs=77.4
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
.......++|||+|||+++|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|++|| .+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3345568999999999999999999999999999999999998 7999999999999999999999 7887 89999999
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
|.++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999754
No 7
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=5.9e-21 Score=143.38 Aligned_cols=85 Identities=25% Similarity=0.400 Sum_probs=78.7
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.....++|||+|||+++|+++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||++.|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33457899999999999999999999999999999999998 8999999999999999999999 799999999999999
Q ss_pred eCCCCCC
Q 041633 163 PKRTNVP 169 (237)
Q Consensus 163 ~a~~~~~ 169 (237)
++.+..+
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9976543
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=7.3e-20 Score=135.21 Aligned_cols=86 Identities=26% Similarity=0.485 Sum_probs=79.7
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
......++|||+|||+.+++++|+.+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .|+++.|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344568999999999999999999999999999999999997 7999999999999999999999 79999999999999
Q ss_pred EeCCCCCC
Q 041633 162 LPKRTNVP 169 (237)
Q Consensus 162 ~~a~~~~~ 169 (237)
.+++...+
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987543
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=137.32 Aligned_cols=80 Identities=23% Similarity=0.405 Sum_probs=73.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-Hh-CCceeCCeeeEEEeC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QL-NESELHGRQLKVLPK 164 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l-~g~~l~g~~i~V~~a 164 (237)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++ +++++|||||+|.+.++|.+|| .+ ++..|.|++|+|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 7999999999999999999999 56 566799999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
.+++
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=133.57 Aligned_cols=83 Identities=23% Similarity=0.532 Sum_probs=77.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
..+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+||.|+++.|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3457999999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8653
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=132.17 Aligned_cols=81 Identities=26% Similarity=0.571 Sum_probs=76.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 47899999999999999999999999999999999998 7999999999999999999999 799999999999999998
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
++.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 12
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1e-19 Score=134.10 Aligned_cols=83 Identities=28% Similarity=0.398 Sum_probs=78.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+++++++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34578999999999999999999999999999999999998999999999999999999999 79999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7643
No 13
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=141.65 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=78.9
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
......++|||+|||+++++++|+.+|+.||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999998 7899999999999999999999 79999999999999
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
.++++..
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998653
No 14
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=133.46 Aligned_cols=82 Identities=28% Similarity=0.546 Sum_probs=77.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+++|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999998 8999999999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8754
No 15
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=9.4e-20 Score=163.98 Aligned_cols=82 Identities=23% Similarity=0.545 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+.+|+++|..+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|| .||++.|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999997 7999999999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8654
No 16
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=5.3e-20 Score=133.72 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=78.5
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCC---eeeE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHG---RQLK 160 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g---~~i~ 160 (237)
.....++|||+|||+++++++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|.+|| .||+..|.| +.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345689999999999999999999999999999999999999999999999999999999999 799999988 9999
Q ss_pred EEeCCCCC
Q 041633 161 VLPKRTNV 168 (237)
Q Consensus 161 V~~a~~~~ 168 (237)
|.++++..
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998754
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.8e-20 Score=133.55 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=78.7
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
...+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|| .||++.|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567999999999999999999999999999999999997 7999999999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
++++..
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998653
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=7.1e-20 Score=135.33 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=79.5
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
.......++|||+|||+++++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||++.|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3344567899999999999999999999999999999999998 7999999999999999999999 8999999999999
Q ss_pred EEeCCCCC
Q 041633 161 VLPKRTNV 168 (237)
Q Consensus 161 V~~a~~~~ 168 (237)
|.+++++.
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99998653
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=132.44 Aligned_cols=84 Identities=24% Similarity=0.532 Sum_probs=78.8
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
...+.++|||+|||+++|+++|+.+|++||.|..|+|+.+++++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
++++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98654
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=5.8e-20 Score=127.70 Aligned_cols=79 Identities=22% Similarity=0.426 Sum_probs=75.3
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
+.+|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999997 7999999999999999999999 7999999999999999986
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=135.29 Aligned_cols=84 Identities=29% Similarity=0.500 Sum_probs=78.3
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
...+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34457999999999999999999999999999999999998 6999999999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
+++...
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998653
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=133.06 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=77.8
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
...+.++|||+|||+++|+++|+.+|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999999999999998 8899999999999999999999 7999999999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98754
No 23
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=132.40 Aligned_cols=81 Identities=26% Similarity=0.457 Sum_probs=76.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEE-EEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRV-TILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v-~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
+.++|||+|||+++++++|+.+|++||.|..| +|+.++ ++.++|||||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 47899999999999999999999999999999 999996 7999999999999999999999 69999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
.+..
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8653
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=134.11 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=77.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+.+++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 457999999999999999999999999999999999997 7999999999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 25
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=129.74 Aligned_cols=80 Identities=24% Similarity=0.428 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
+.++|||+|||+++++++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46899999999999999999999999999999999997 7999999999999999999999 799999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=134.17 Aligned_cols=84 Identities=24% Similarity=0.432 Sum_probs=78.5
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.....++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999998 7999999999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
++++..
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 997653
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=135.41 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=73.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCC--eeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCc----eeCCee
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGT--VNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNES----ELHGRQ 158 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~--i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~----~l~g~~ 158 (237)
....+|||+|||+++|+++|+++|++||. |..|+|++++ +++++|||||+|.+.++|.+|+ .||+. .|.||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 6799999998 7999999999999999999999 79886 589999
Q ss_pred eEEEeCCC
Q 041633 159 LKVLPKRT 166 (237)
Q Consensus 159 i~V~~a~~ 166 (237)
|.|.+|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=9.7e-20 Score=131.99 Aligned_cols=82 Identities=28% Similarity=0.482 Sum_probs=76.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
..+.++|||+|||+++++++|+.+|++|| |..|+|+.++ +++++|||||+|.+.++|.+||.||++.|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34578999999999999999999999997 9999999998 799999999999999999999999999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 29
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=4.5e-20 Score=129.96 Aligned_cols=82 Identities=61% Similarity=1.076 Sum_probs=77.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~~ 167 (237)
.++|||+|||+++++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+.||++.|.|+.|+|.++++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 5899999999999999999999999999999999998 799999999999999999999999999999999999999876
Q ss_pred CCC
Q 041633 168 VPG 170 (237)
Q Consensus 168 ~~~ 170 (237)
.++
T Consensus 86 ~pg 88 (89)
T 3ucg_A 86 RPG 88 (89)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 30
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=133.38 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhc-CCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCce-eCCeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQS-CGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESE-LHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~-l~g~~i~V~~ 163 (237)
.+.++|||+|||+++|+++|+.+|++ ||.|..|.|+.+++++++|||||+|.+.++|.+|+ .|+++. |.|+.|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45789999999999999999999999 99999999999999999999999999999999999 799999 9999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
+.++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97653
No 31
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=6.7e-20 Score=128.68 Aligned_cols=80 Identities=26% Similarity=0.523 Sum_probs=75.2
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~ 163 (237)
...+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+.++++.|.|+.|+|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999998 79999999999999999999998889999999999998
Q ss_pred C
Q 041633 164 K 164 (237)
Q Consensus 164 a 164 (237)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 32
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=4.1e-20 Score=145.36 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=77.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..+.++|||+|||+.+|+++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|| .||++.|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999997 8999999999999999999999 7999999999999999
Q ss_pred CCCCCCC
Q 041633 164 KRTNVPG 170 (237)
Q Consensus 164 a~~~~~~ 170 (237)
+.+..+.
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9765443
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.5e-20 Score=133.29 Aligned_cols=85 Identities=21% Similarity=0.478 Sum_probs=78.9
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeC-C-CCCceeEEEEEeCCHHHHHHHH-Hh-CCceeCCeee
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-K-FGQPKGFAYVEFLEIDAVQEAL-QL-NESELHGRQL 159 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~-~-~g~~~g~afV~f~~~~~a~~al-~l-~g~~l~g~~i 159 (237)
......++|||+|||+++++++|+.+|++||.|..|+|+.+ + +++++|||||+|.+.++|.+|| .| |++.|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556899999999999999999999999999999999998 5 7999999999999999999999 79 9999999999
Q ss_pred EEEeCCCCC
Q 041633 160 KVLPKRTNV 168 (237)
Q Consensus 160 ~V~~a~~~~ 168 (237)
+|.++++..
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998753
No 34
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=134.05 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....++|||+|||+++++++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3457899999999999999999999999999999999998 7999999999999999999999 7999999999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97654
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.2e-20 Score=133.67 Aligned_cols=84 Identities=26% Similarity=0.438 Sum_probs=78.3
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhC------CceeCC
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLN------ESELHG 156 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~------g~~l~g 156 (237)
...+.++|||+|||+++|+++|+.+|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|| .|| ++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999998 7899999999999999999999 799 999999
Q ss_pred eeeEEEeCCCCC
Q 041633 157 RQLKVLPKRTNV 168 (237)
Q Consensus 157 ~~i~V~~a~~~~ 168 (237)
+.|+|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998653
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-20 Score=132.59 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=76.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-C-CCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~-g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+++++++|+.+|++|| |..|.|+.++ + ++++|||||+|.+.++|.+||.||++.|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4578999999999999999999999999 9999999998 5 89999999999999999999999999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+++.
T Consensus 92 ~~~~ 95 (104)
T 1wi8_A 92 DQAQ 95 (104)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8753
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=1.1e-20 Score=133.92 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=70.6
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+|||+|||+++|+++|+++|++|| .|..|+|+.++ +|+++|||||+|.+.++|++|+ .||++.|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999998 8999999999999999999999 899999999999999998
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
+.+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=129.92 Aligned_cols=84 Identities=23% Similarity=0.448 Sum_probs=77.1
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
......++|||+|||+++|+++|+.+|++||.|..|+|+.++.+ ++|||||+|.+.++|.+|+ .||++.|.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999988744 8999999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 998754
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=7.3e-20 Score=135.54 Aligned_cols=79 Identities=22% Similarity=0.414 Sum_probs=73.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~ 167 (237)
..+|||+|||+++|+++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|| .|+++.|.|+.|+|.++.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 5689999999999999999999999999999999886 347999999999999999999 89999999999999999764
Q ss_pred C
Q 041633 168 V 168 (237)
Q Consensus 168 ~ 168 (237)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=5.6e-20 Score=128.36 Aligned_cols=79 Identities=28% Similarity=0.490 Sum_probs=75.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 357899999999999999999999999999999999986 7899999999999999999999 89999999999999998
Q ss_pred C
Q 041633 165 R 165 (237)
Q Consensus 165 ~ 165 (237)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=6.4e-20 Score=133.49 Aligned_cols=85 Identities=22% Similarity=0.469 Sum_probs=78.3
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcee---CCee
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESEL---HGRQ 158 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l---~g~~ 158 (237)
......++|||+|||+++++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 344567899999999999999999999999999999999998 7999999999999999999999 7999987 8999
Q ss_pred eEEEeCCCCC
Q 041633 159 LKVLPKRTNV 168 (237)
Q Consensus 159 i~V~~a~~~~ 168 (237)
|+|.++++..
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999998643
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=132.50 Aligned_cols=82 Identities=26% Similarity=0.581 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999988 7899999999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7653
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=134.01 Aligned_cols=84 Identities=27% Similarity=0.529 Sum_probs=78.1
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCee--------EEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCcee
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVN--------RVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESEL 154 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l 154 (237)
.....++|||+|||+++|+++|+.+|++||.|. .|+|+.++ +++++|||||+|.+.++|.+|| .||++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445689999999999999999999999999998 69999996 7999999999999999999999 7999999
Q ss_pred CCeeeEEEeCCCCC
Q 041633 155 HGRQLKVLPKRTNV 168 (237)
Q Consensus 155 ~g~~i~V~~a~~~~ 168 (237)
.|+.|+|.++++..
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998654
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.8e-20 Score=129.76 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=76.4
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999999998 6899999999999999999999 7999999999999999
Q ss_pred CCC
Q 041633 164 KRT 166 (237)
Q Consensus 164 a~~ 166 (237)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=134.97 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
...++|||+|||+++|+++|+.+|++||.|.+|.|+.++.++++|||||+|.+.++|.+||.++++.|.|+.|.|.++..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999998753
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=1e-19 Score=130.18 Aligned_cols=80 Identities=29% Similarity=0.507 Sum_probs=76.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
+.++|||+|||+++++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999998 7999999999999999999999 899999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
++
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=130.12 Aligned_cols=81 Identities=35% Similarity=0.542 Sum_probs=76.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+.+++++|+++|++||.|..|+|+.+++++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34578999999999999999999999999999999999988999999999999999999999 69999999999999998
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=129.91 Aligned_cols=84 Identities=24% Similarity=0.425 Sum_probs=76.5
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
......++|||+|||+.+++++|+.+|++||.|..|+|+.++.+ ++|||||+|.+.++|.+|+ .||++.|.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34456899999999999999999999999999999999988643 6899999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
++++..
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998743
No 49
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=130.64 Aligned_cols=81 Identities=21% Similarity=0.452 Sum_probs=76.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCee-EEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCee----e
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVN-RVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQ----L 159 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~-~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~----i 159 (237)
...++|||+|||+++++++|+.+|++||.|. .|+|+.++ +++++|||||+|.+.++|++|+ .||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3579999999999999999999999999999 99999998 7999999999999999999999 69999999999 9
Q ss_pred EEEeCCCC
Q 041633 160 KVLPKRTN 167 (237)
Q Consensus 160 ~V~~a~~~ 167 (237)
+|.+|++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999764
No 50
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.2e-20 Score=134.93 Aligned_cols=82 Identities=18% Similarity=0.436 Sum_probs=76.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+||.++++.|.|+.|+|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 346899999999999999999999999999999999997 7999999999999999999999559999999999999998
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 653
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=9.5e-20 Score=133.54 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....++|||+|||+++|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999997 7999999999999999999999 7999999999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
++++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98654
No 52
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.3e-19 Score=129.12 Aligned_cols=84 Identities=19% Similarity=0.358 Sum_probs=76.8
Q ss_pred cccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEE
Q 041633 84 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 162 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~ 162 (237)
....+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+||. +++.|.|+.|+|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEE
Confidence 344567899999999999999999999999999999999998 79999999999999999999996 4789999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqg_A 89 LPNSKQ 94 (103)
T ss_dssp CCCTTC
T ss_pred ecCCCC
Confidence 997653
No 53
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=132.30 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=74.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
...++|||+|||+++|+++|+++|++|| +..|+|+.+++++++|||||+|.+.++|++||.+|++.|.++.|+|.++..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 4568999999999999999999999999 459999999999999999999999999999998899999999999999875
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 92 ~ 92 (102)
T 1wez_A 92 A 92 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=128.64 Aligned_cols=80 Identities=30% Similarity=0.521 Sum_probs=75.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3457899999999999999999999999999999999998 6899999999999999999999 8999999999999999
Q ss_pred CC
Q 041633 164 KR 165 (237)
Q Consensus 164 a~ 165 (237)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=128.81 Aligned_cols=81 Identities=28% Similarity=0.501 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC--C--CceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF--G--QPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~--g--~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
+.++|||+|||+++++++|+.+|++||.|..|.|+.++. | .++|||||+|.+.++|.+|+ .||++.|.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 478999999999999999999999999999999998763 3 88999999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
++++..
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 997643
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=129.43 Aligned_cols=80 Identities=26% Similarity=0.416 Sum_probs=75.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeE--------EEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR--------VTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
....++|||+|||+++++++|+.+|++||.|.. |+|+.++ +++++|||||+|.+.++|.+|+ .||+..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345799999999999999999999999999999 9999997 7999999999999999999999 79999999
Q ss_pred CeeeEEEeCC
Q 041633 156 GRQLKVLPKR 165 (237)
Q Consensus 156 g~~i~V~~a~ 165 (237)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 57
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=2.3e-19 Score=134.24 Aligned_cols=83 Identities=57% Similarity=1.062 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||+++|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+.||++.|.|+.|+|.++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999997 79999999999999999999999999999999999999987
Q ss_pred CCCC
Q 041633 167 NVPG 170 (237)
Q Consensus 167 ~~~~ 170 (237)
..++
T Consensus 115 ~~~~ 118 (124)
T 2jwn_A 115 NMPG 118 (124)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5443
No 58
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=139.82 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=78.2
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeE--EEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCc----ee
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR--VTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNES----EL 154 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~----~l 154 (237)
.......++|||+|||+++|+++|+.+|++||.|.. |+|+.++ +|+++|||||+|.+. +|.+|+ .||++ .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567889999999999999999999999999976 9999999 899999999999999 999999 89999 99
Q ss_pred CCeeeEEEeCCCCC
Q 041633 155 HGRQLKVLPKRTNV 168 (237)
Q Consensus 155 ~g~~i~V~~a~~~~ 168 (237)
.|+.|+|.++++..
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999998653
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=132.29 Aligned_cols=85 Identities=27% Similarity=0.537 Sum_probs=78.7
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
.......++|||+|||+.+++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .|++..|.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3344567899999999999999999999999999999999987 7999999999999999999999 7999999999999
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
|.+++++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999764
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5e-19 Score=129.49 Aligned_cols=78 Identities=18% Similarity=0.349 Sum_probs=72.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCC-----eeeE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHG-----RQLK 160 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g-----~~i~ 160 (237)
...++|||+|||+++|+++|+.+|++||.|..|.|+.+ |||||+|.+.++|++|| .||++.|.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 35789999999999999999999999999999999865 89999999999999999 799999999 9999
Q ss_pred EEeCCCCCCC
Q 041633 161 VLPKRTNVPG 170 (237)
Q Consensus 161 V~~a~~~~~~ 170 (237)
|.+|.++.+.
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999876543
No 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=3.8e-19 Score=129.61 Aligned_cols=80 Identities=24% Similarity=0.405 Sum_probs=76.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999 79999999999999998
Q ss_pred C
Q 041633 165 R 165 (237)
Q Consensus 165 ~ 165 (237)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.9e-19 Score=133.58 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=75.7
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.....++|||+|||+++++++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 7999999999999999999999 799999999999999
Q ss_pred eCC
Q 041633 163 PKR 165 (237)
Q Consensus 163 ~a~ 165 (237)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 63
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=6.1e-19 Score=127.81 Aligned_cols=77 Identities=26% Similarity=0.482 Sum_probs=70.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+.++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+|+ .||++.|.|+.|+|.+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 457899999999999999999999999999999986 569999999999999999 799999999999999998
Q ss_pred CCCCC
Q 041633 166 TNVPG 170 (237)
Q Consensus 166 ~~~~~ 170 (237)
+....
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 75433
No 64
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=126.58 Aligned_cols=81 Identities=20% Similarity=0.456 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCC-ceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQ-PKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~-~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..++|||+|||+++|+++|+.+|++||.|..|.|+.++ ++. ++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999999887 444 8999999999999999999 79999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 65
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=134.14 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=76.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTV-NRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
..+.++|||+|||+++|+++|+.+|++||.| ..|+|+.+++++++|||||+|.+.++|.+||.+|++.|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 3457899999999999999999999999999 899999999999999999999999999999966999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 66
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=124.83 Aligned_cols=80 Identities=19% Similarity=0.407 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
...++|||+|||+++++++|+++|++| .|..|+|+.+.+|+++|||||+|.+.++|.+||.||+..|.|+.|+|.++.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 457899999999999999999999999 9999999999889999999999999999999999999999999999999976
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 87 ~ 87 (91)
T 2dgw_A 87 G 87 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=130.51 Aligned_cols=84 Identities=27% Similarity=0.485 Sum_probs=77.6
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~ 163 (237)
.....++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+||..+++.|.|+.|+|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 34567999999999999999999999999999999999997 79999999999999999999994499999999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 97653
No 68
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=3e-19 Score=131.04 Aligned_cols=86 Identities=20% Similarity=0.405 Sum_probs=74.1
Q ss_pred CcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEE
Q 041633 83 SKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKV 161 (237)
Q Consensus 83 ~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V 161 (237)
.......++|||+|||+++|+++|+.+|++||.|..|+|+.++ +|+++|||||+|.+.++|.+||...++.|.|+.|+|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 3444568999999999999999999999999999999999998 799999999999999999999955569999999999
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
.++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998653
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.1e-20 Score=134.20 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCCeEEEecCCC------CCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCC-ee
Q 041633 88 DSRSVFVGNVDY------ACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHG-RQ 158 (237)
Q Consensus 88 ~~~~ifV~nL~~------~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g-~~ 158 (237)
..++|||+|||+ ++++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .||++.|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 99999999999999999999999998 6999999999999999999999 899999999 99
Q ss_pred eEEEeCCC
Q 041633 159 LKVLPKRT 166 (237)
Q Consensus 159 i~V~~a~~ 166 (237)
|+|.+|.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999964
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=127.75 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=74.1
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
.....++|||+|||+++|+++|+.+|++||.|..|.|+.+ +.++|||||+|.+.++|.+|| .||++.|.|+.|+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999654 467999999999999999999 8999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
+++.
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 9764
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=9.8e-20 Score=124.27 Aligned_cols=74 Identities=24% Similarity=0.489 Sum_probs=71.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
+|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|++|+.++++.|.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998 799999999999999999999999999999999999976
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=5e-19 Score=125.38 Aligned_cols=81 Identities=26% Similarity=0.435 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+.++|||+|||+++++++|+.+|++||.|..|.|+.+ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35789999999999999999999999999999999874 7889999999999999999999 799999999999999998
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
+..
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=128.88 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=75.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+++++++|+.+|++||.|..+.++.++ +++++|||||+|.+.++|++|+ .||++.|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 346899999999999999999999999999888887776 7999999999999999999999 89999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 74
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.5e-19 Score=135.43 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=78.5
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
...+.++|||+|||+.+++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .|++..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 7899999999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
+++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998754
No 75
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=129.18 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCC-eeEEEEe-eCC-CCCceeEEEEEeCCHHHHHHHH-HhC--CceeCCeeeEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGT-VNRVTIL-TDK-FGQPKGFAYVEFLEIDAVQEAL-QLN--ESELHGRQLKV 161 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~-i~~v~i~-~~~-~g~~~g~afV~f~~~~~a~~al-~l~--g~~l~g~~i~V 161 (237)
+.++|||+|||+++|+++|+.+|++||. |..|.|+ .++ +++++|||||+|.+.++|.+|+ .|+ ++.|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4789999999999999999999999998 9999998 666 6899999999999999999999 786 58999999999
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
.+|++..
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9998654
No 76
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-20 Score=136.79 Aligned_cols=81 Identities=32% Similarity=0.541 Sum_probs=76.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+||.||++.|.|+.|+|.+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 456899999999999999999999999999999999998 6999999999999999999999999999999999999996
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 77
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=138.06 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCG--TVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
..++|||+|||+++|+++|+.+|++|| .|..|+|+.++ +|+++|||||+|.+.++|.+|| .||++.|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999998 8999999999999999999999 7999999999999999
Q ss_pred CCC
Q 041633 164 KRT 166 (237)
Q Consensus 164 a~~ 166 (237)
|..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 78
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.79 E-value=3.4e-20 Score=141.91 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=74.8
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
....++|||+|||+++|+++|+++|++|| |..|+|+.+++++++|||||+|.+.++|++||.+|++.|.|+.|+|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34578999999999999999999999999 77999999988999999999999999999999999999999999999987
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 79
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=126.37 Aligned_cols=80 Identities=25% Similarity=0.536 Sum_probs=73.1
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
...+.++|||+|||+++|+++|+.+|++||.| +|+.+.+++++|||||+|.+.++|++|| .||++.|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34568999999999999999999999999976 5666677899999999999999999999 7999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
++++
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9865
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=126.49 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCCeEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
..++|||+|||+++++++|+ .+|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 46899999999999999999 99999999999999988744 889999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
+|++..
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997643
No 81
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-19 Score=127.69 Aligned_cols=81 Identities=22% Similarity=0.399 Sum_probs=75.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR-VTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+.+++++|||||+|.+.++|.+||..+++.|.|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45789999999999999999999999999987 88988888999999999999999999999559999999999999986
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 93 ~~ 94 (104)
T 1wg5_A 93 RA 94 (104)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 82
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=130.14 Aligned_cols=85 Identities=20% Similarity=0.411 Sum_probs=77.1
Q ss_pred cCcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 82 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 82 ~~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
........++|||+|||+++++++|+.+|++||.|..|.|+.++. .++|||||+|.+.++|.+|+ .|+++.|.|+.|+
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344455689999999999999999999999999999999998763 48999999999999999999 7999999999999
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
|.+++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999764
No 83
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=130.63 Aligned_cols=81 Identities=33% Similarity=0.628 Sum_probs=76.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..++|||+|||+.+++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999997 7999999999999999999999 799999999999999997
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-19 Score=129.03 Aligned_cols=83 Identities=24% Similarity=0.359 Sum_probs=75.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHH---HHhhcCCCeeEEEEeeCC-C---CCceeEEEEEeCCHHHHHHHH-HhCCceeCCe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQ---QHFQSCGTVNRVTILTDK-F---GQPKGFAYVEFLEIDAVQEAL-QLNESELHGR 157 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~---~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~ 157 (237)
....++|||+|||+++++++|+ .+|++||.|..|.|+.++ + ++++|||||+|.+.++|++|| .||++.|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999887 3 356799999999999999999 7999999999
Q ss_pred eeEEEeCCCCC
Q 041633 158 QLKVLPKRTNV 168 (237)
Q Consensus 158 ~i~V~~a~~~~ 168 (237)
.|+|.+|.+++
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998754
No 85
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=5.7e-19 Score=131.35 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=76.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCC---eeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGT---VNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 162 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~ 162 (237)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++.|+++|||||+|.+.++|++||.+|++.|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 345789999999999999999999999999 89999999988999999999999999999999999999999999999
Q ss_pred eCCC
Q 041633 163 PKRT 166 (237)
Q Consensus 163 ~a~~ 166 (237)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9854
No 86
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=124.59 Aligned_cols=81 Identities=23% Similarity=0.445 Sum_probs=73.4
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
...+.++|||+|||+++|+++|+++|+.|+ .|.++.++ +++++|||||+|.+.++|.+|| .||++.|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345689999999999999999999999873 67888887 7999999999999999999999 799999999999999
Q ss_pred eCCCCC
Q 041633 163 PKRTNV 168 (237)
Q Consensus 163 ~a~~~~ 168 (237)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998643
No 87
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=7e-19 Score=136.95 Aligned_cols=82 Identities=28% Similarity=0.516 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+++|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|| .||++.|.|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999997 7999999999999999999999 79999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8654
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=130.28 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=74.1
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC--CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK--FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~ 163 (237)
....++|||+|||+++++++|+.+|++|| |..|+|+.++ +|+++|||||+|.+.++|.+|+.|++..|.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34579999999999999999999999999 9999999987 69999999999999999999999999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
++++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9764
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=4.1e-19 Score=126.60 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..++|||+|||+++|+++|+.+|++||.|..+.++.++ +++++|||||+|.+.++|++|+ .||++.|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999988888877 7899999999999999999999 799999999999999885
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.2e-19 Score=135.88 Aligned_cols=84 Identities=29% Similarity=0.527 Sum_probs=78.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....++|||+|||+++|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|++|| .||+..|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999988 7999999999999999999999 7999999999999999
Q ss_pred CCCCCC
Q 041633 164 KRTNVP 169 (237)
Q Consensus 164 a~~~~~ 169 (237)
+++..+
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 986543
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-19 Score=126.45 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
+.++|||+|||+++++++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 57899999999999999999999999999999999997 7999999999999999999999 799999999999887664
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=127.88 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=70.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC--CceeCCeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN--ESELHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~--g~~l~g~~i~V~~ 163 (237)
.+.++|||+|||+++|+++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+ .|+ +..|.|++|+|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45789999999999999999999999999999999865 799999999999999999 676 4789999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
|+.+.
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 97654
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-18 Score=123.98 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=71.1
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh--CCceeCCeeeEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QL--NESELHGRQLKV 161 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l--~g~~l~g~~i~V 161 (237)
...+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+ .| ++..|.|++|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3356789999999999999999999999999999998864 799999999999999999 55 578899999999
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
.+++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9998654
No 94
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=2.4e-18 Score=128.76 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=77.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+.+++++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999 79999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 754
No 95
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=127.96 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=73.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
.++|||+|||+++|+++|+++|++| .|..|+|+.+++|+++|||||+|.+.++|++||.+|++.|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 8999999999889999999999999999999999999999999999998854
No 96
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=7.9e-19 Score=133.80 Aligned_cols=81 Identities=22% Similarity=0.389 Sum_probs=76.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCC---eeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGT---VNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 162 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~ 162 (237)
....++|||+|||+++|+++|+++|++||. |..|+|+.++.|+++|||||+|.+.++|++||.+|++.|.||.|+|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 345789999999999999999999999999 89999999988999999999999999999999999999999999999
Q ss_pred eCCC
Q 041633 163 PKRT 166 (237)
Q Consensus 163 ~a~~ 166 (237)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9854
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=127.18 Aligned_cols=83 Identities=16% Similarity=0.326 Sum_probs=76.7
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcee--------C
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESEL--------H 155 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l--------~ 155 (237)
.....++|||+|||+++|+++|+.+|++||.|..|+|+.++++.++|||||+|.+.++|.+|+ .||+..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 345678999999999999999999999999999999999998999999999999999999999 7999999 5
Q ss_pred CeeeEEEeCCCC
Q 041633 156 GRQLKVLPKRTN 167 (237)
Q Consensus 156 g~~i~V~~a~~~ 167 (237)
+++|.|.++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999853
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=121.08 Aligned_cols=75 Identities=24% Similarity=0.492 Sum_probs=70.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+.++|||+|||+++++++|+.+|++||.|..|.|+ +|||||+|.+.++|.+|+ .||+..|.|+.|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 457899999999999999999999999999999997 689999999999999999 899999999999999998
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
+..
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 99
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4e-18 Score=120.88 Aligned_cols=76 Identities=26% Similarity=0.530 Sum_probs=70.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+++++++|+.+|++||.|..|.|+ ++||||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3457899999999999999999999999999999996 459999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+++.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7653
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=2.1e-19 Score=126.92 Aligned_cols=78 Identities=35% Similarity=0.672 Sum_probs=71.6
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~ 167 (237)
++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.+ |.+|+ .||+..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999999999999999999999999998 6999999999999999 99999 79999999999999999765
Q ss_pred C
Q 041633 168 V 168 (237)
Q Consensus 168 ~ 168 (237)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 101
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.1e-18 Score=121.57 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=70.4
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcC--CCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSC--GTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
...+.++|||+|||+.+|+++|+.+|++| |.|..|.++ +|||||+|.+.++|.+|+ .||++.|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34467899999999999999999999999 999999874 689999999999999999 79999999999999
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
.++++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998653
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-19 Score=121.53 Aligned_cols=74 Identities=23% Similarity=0.489 Sum_probs=70.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
++|||+|||+++++++|+.+|++||.|..|.++.++ +++++|||||+|.+.++|.+|+ .++ ..+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998 7999999999999999999999 677 9999999999987
No 103
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=120.64 Aligned_cols=74 Identities=30% Similarity=0.553 Sum_probs=69.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++|+++|+.+|++||.|..|.|+ ++||||+|.+.++|.+|+ .||++.|.|+.|+|.+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 457899999999999999999999999999999997 459999999999999999 799999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
+.
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 104
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=131.02 Aligned_cols=80 Identities=28% Similarity=0.473 Sum_probs=74.9
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.....++|||+|||+.+++++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44568899999999999999999999999999999999997 7999999999999999999999 899999999999999
Q ss_pred eC
Q 041633 163 PK 164 (237)
Q Consensus 163 ~a 164 (237)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 76
No 105
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=2.4e-18 Score=126.00 Aligned_cols=81 Identities=23% Similarity=0.441 Sum_probs=71.7
Q ss_pred ccCcccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeee
Q 041633 81 QASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQL 159 (237)
Q Consensus 81 ~~~~~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i 159 (237)
.........++|||+|||+++|+++|+.+|++||.|..|.|+ +|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 334455678999999999999999999999999999999997 689999999999999999 799999999999
Q ss_pred EEEeCCCCC
Q 041633 160 KVLPKRTNV 168 (237)
Q Consensus 160 ~V~~a~~~~ 168 (237)
+|.++++..
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 999998754
No 106
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.2e-19 Score=121.59 Aligned_cols=74 Identities=18% Similarity=0.393 Sum_probs=70.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
+|||+|||+++++++|+.+|++||.|..|.++.++ +++++|||||+|.+.++|.+|+.++++.|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999987 799999999999999999999977999999999999875
No 107
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=126.98 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCCCC------CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCe-e
Q 041633 87 ADSRSVFVGNVDYAC------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGR-Q 158 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~------t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~-~ 158 (237)
...++|||+|||+.+ |+++|+.+|++||.|..|.|+ ..+|+++|||||+|.+.++|.+|+ .|||+.|.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 447899999999999 789999999999999999988 347899999999999999999999 7999999998 9
Q ss_pred eEEEeCCC
Q 041633 159 LKVLPKRT 166 (237)
Q Consensus 159 i~V~~a~~ 166 (237)
|+|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99999964
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=124.44 Aligned_cols=78 Identities=18% Similarity=0.433 Sum_probs=72.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+.+++++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+ .|+++.|.|+.|+|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345789999999999999999999999999999999875 799999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=125.81 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=69.2
Q ss_pred CCCCeEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCC--ceeCCeeeEEE
Q 041633 87 ADSRSVFVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNE--SELHGRQLKVL 162 (237)
Q Consensus 87 ~~~~~ifV~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g--~~l~g~~i~V~ 162 (237)
.+.++|||+|||+ .+|+++|+.+|++||.|.+|.|+++ +|||||+|.+.++|.+|+ .|++ ..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3688999999999 9999999999999999999999865 589999999999999999 7775 46999999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
+|+..
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99754
No 110
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=123.73 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=69.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCce--eCCeeeEEE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESE--LHGRQLKVL 162 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~--l~g~~i~V~ 162 (237)
..++++|||+|||+.+|+++|+.+|++||.|.+|.+++ .||||||+|.+.++|.+|+ .|++.. |.|++|+|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34689999999999999999999999999999999985 3799999999999999999 788765 789999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99753
No 111
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=122.04 Aligned_cols=79 Identities=28% Similarity=0.417 Sum_probs=72.5
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
...+.++|||+|||+.+|+++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+ .||++.|.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3456789999999999999999999999999999999854 799999999999999999 8999999999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
+++..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98643
No 112
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.8e-18 Score=127.28 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..++|||+|||+++++++|+++|++|| .|..+.|+.. .++|||||+|.+.++|++|| .||+..|.|+.|+|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 468999999999999999999999999 8999988643 47899999999999999999 899999999999999997
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
..+
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 113
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=128.45 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=75.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCC---eeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGT---VNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~ 163 (237)
...++|||+|||+++|+++|+.+|+.||. |..|+|+.++.|+++|||||+|.+.++|.+||.+|++.|+|+.|+|.+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 45789999999999999999999999998 899999999889999999999999999999999999999999999999
Q ss_pred CCC
Q 041633 164 KRT 166 (237)
Q Consensus 164 a~~ 166 (237)
+..
T Consensus 89 a~~ 91 (107)
T 2lmi_A 89 INN 91 (107)
T ss_dssp CCH
T ss_pred CCH
Confidence 864
No 114
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=123.87 Aligned_cols=75 Identities=27% Similarity=0.455 Sum_probs=70.7
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTNV 168 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~~ 168 (237)
++|||+|||+++|+++|+.+|++||.|..|.|+.+ ++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999876 6899999999999999999 799999999999999998754
No 115
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=129.20 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=72.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
..+.++|||+|||+.+++++|+ .+|++||.|..|.+. ++++++|||||+|.+.++|..|+ .|||..|.|+.|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457899999999999999876 699999999998875 36788999999999999999999 8999999999999
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
|.+|+.+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999764
No 116
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=130.84 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=72.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEee-CCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILT-DKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~-~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+++|+++|+.+|++||.|..+.++. +.+|+++|||||+|.+.++|.+||.||++.|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34568999999999999999999999999998844444 44899999999999999999999999999999999999998
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=118.80 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=70.2
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh-CCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QL-NESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l-~g~~l~g~~i~V~ 162 (237)
.....++|||+|||+++++++|+.+|++||.|..|.++.+ +|||||+|.+.++|.+|+ .| ++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 3456789999999999999999999999999999999863 799999999999999999 68 9999999999999
Q ss_pred eCC
Q 041633 163 PKR 165 (237)
Q Consensus 163 ~a~ 165 (237)
+|+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=121.57 Aligned_cols=77 Identities=19% Similarity=0.394 Sum_probs=71.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC--CeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH--GRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~--g~~i~V~~ 163 (237)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|+ .||++.|. |+.|+|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 45789999999999999999999999999999998754 789999999999999999 79999999 99999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
+++++
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 119
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=5.1e-20 Score=136.41 Aligned_cols=81 Identities=26% Similarity=0.410 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeE--------EEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNR--------VTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHG 156 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g 156 (237)
.+.++|||+|||+.+++++|+.+|++||.|.. |+|+.++ +++++|||||+|.+.++|.+|+ .||++.|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999998 8999987 7999999999999999999999 799999999
Q ss_pred eeeEEEeCCCC
Q 041633 157 RQLKVLPKRTN 167 (237)
Q Consensus 157 ~~i~V~~a~~~ 167 (237)
+.|+|.+++++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999999764
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=125.43 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=71.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCee----EEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVN----RVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~----~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
..+.++|||+|||+++|+++|+.+|++||.|. .+.+. +++++|||||+|.+.++|.+|+ .||++.|.|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34678999999999999999999999999984 44444 6788999999999999999999 7999999999999
Q ss_pred EEeCCCCC
Q 041633 161 VLPKRTNV 168 (237)
Q Consensus 161 V~~a~~~~ 168 (237)
|.++++..
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99998654
No 121
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=126.45 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC--CceeCCeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN--ESELHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~--g~~l~g~~i~V~~ 163 (237)
.+.++|||+|||+++|+++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+ .|+ +..|.|++|+|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 45789999999999999999999999999999999865 799999999999999999 676 4689999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
|+.+.
T Consensus 104 a~~k~ 108 (119)
T 2ad9_A 104 SNHKE 108 (119)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 97654
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-18 Score=123.21 Aligned_cols=75 Identities=19% Similarity=0.410 Sum_probs=69.5
Q ss_pred CCCCeEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+ .+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4578999999999 99999999999999999999984 789999999999999999 79999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 7643
No 123
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=129.85 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCe----eEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTV----NRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 162 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i----~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~ 162 (237)
...++|||+|||+++|+++|+++|++||.| ..|+|+.+++|+++|||||+|.+.++|++||..|++.|.+|.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 346899999999999999999999999975 6899999989999999999999999999999669999999999999
Q ss_pred eCCC
Q 041633 163 PKRT 166 (237)
Q Consensus 163 ~a~~ 166 (237)
.+..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8853
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=120.74 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=66.7
Q ss_pred CCeEEEecCCCCC------CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCe-eeE
Q 041633 89 SRSVFVGNVDYAC------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGR-QLK 160 (237)
Q Consensus 89 ~~~ifV~nL~~~~------t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~-~i~ 160 (237)
.++|||+|||+.+ ++++|+.+|++||.|..|.|+ ..+|+++|||||+|.+.++|.+|+ .|||..|.|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3789999999999 779999999999999999987 347899999999999999999999 7999999999 887
Q ss_pred E
Q 041633 161 V 161 (237)
Q Consensus 161 V 161 (237)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 125
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3.1e-18 Score=119.70 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=68.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+..|||+||++.+|+++|+.+|.+||+|.+++++. ++|||||+|.+.++|.+|+ .||+..|.|+.|+|..|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999975 5899999999999999999 899999999999999984
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-19 Score=128.42 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=73.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++|+++|+.+|++||.|.. .++.++ +++++|||||+|.+.++|.+||.||++.|.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999999877 556655 6889999999999999999999999999999999999997
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 127
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.8e-18 Score=122.23 Aligned_cols=77 Identities=21% Similarity=0.215 Sum_probs=69.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCC--ceeCCeeeEEE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNE--SELHGRQLKVL 162 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g--~~l~g~~i~V~ 162 (237)
..+.++|||+|||+.+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+ .|++ ..|.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 356789999999999999999999999999999998754 799999999999999999 6765 45999999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
+++.+
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99764
No 128
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=3.3e-18 Score=126.58 Aligned_cols=75 Identities=17% Similarity=0.350 Sum_probs=65.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCee-----eEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQ-----LKV 161 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~-----i~V 161 (237)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++|| .||++.|.|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4689999999999999999999999999999999754 89999999999999999 79999999998 777
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
..+.++.
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7776543
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=1.1e-17 Score=119.99 Aligned_cols=77 Identities=18% Similarity=0.403 Sum_probs=70.1
Q ss_pred cccCCCCeEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 84 KEEADSRSVFVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 84 ~~~~~~~~ifV~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
....+.++|||+|||+ ++++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+ .||+..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445689999999998 99999999999999999999983 799999999999999999 79999999999999
Q ss_pred EeCCCC
Q 041633 162 LPKRTN 167 (237)
Q Consensus 162 ~~a~~~ 167 (237)
.+++++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999764
No 130
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-18 Score=119.58 Aligned_cols=75 Identities=23% Similarity=0.436 Sum_probs=68.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCC-eeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCC-ceeCCeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGT-VNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNE-SELHGRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g-~~l~g~~i~V~~ 163 (237)
...++|||+|||+++|+++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+ .||+ +.|.|+.|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35789999999999999999999999999 6666663 4799999999999999999 7999 999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
++++
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9864
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.6e-18 Score=122.12 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=70.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++++++|+.+|++||.|..|+|+ +++|||||+|.+.++|.+|+ .||++.|.|+.|+|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 346899999999999999999999999999999997 35899999999999999999 899999999999999997
Q ss_pred C
Q 041633 166 T 166 (237)
Q Consensus 166 ~ 166 (237)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=122.11 Aligned_cols=79 Identities=22% Similarity=0.408 Sum_probs=70.9
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..+.++|||+|||+.+++++|+.+|++||.|..+ ..+++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457899999999999999999999999988665 336789999999999999999999 79999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7643
No 133
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=120.25 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=71.0
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+++|+++|+.+|++||.|. +.++.+ +++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34578999999999999999999999999996 666653 57899999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 134
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=2.4e-18 Score=124.29 Aligned_cols=79 Identities=32% Similarity=0.594 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~~ 167 (237)
..++|||+|||+++++++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|++|+. +++.|+|+.|.|.++...
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcC
Confidence 4689999999999999999999999999999999999999999999999999999999999 999999999999998653
No 135
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=2.8e-18 Score=122.65 Aligned_cols=80 Identities=15% Similarity=0.327 Sum_probs=73.3
Q ss_pred CCCCeEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
.+.++|||+|||+++++++|+ .+|++||.|..|.|+. ++.++|||||+|.+.++|..|+ .||+..|.|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 457899999999999999999 9999999999998863 5677899999999999999999 79999999999999
Q ss_pred EeCCCCC
Q 041633 162 LPKRTNV 168 (237)
Q Consensus 162 ~~a~~~~ 168 (237)
.++++..
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998653
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.6e-17 Score=121.66 Aligned_cols=74 Identities=24% Similarity=0.415 Sum_probs=69.3
Q ss_pred CCCCeEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+. +++++|+.+|++||.|..|.| ++|||||+|.+.++|++|+ .|+++.|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999 999999999999999999998 4799999999999999999 89999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 137
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=130.02 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=72.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEE------EEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCee
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRV------TILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQ 158 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v------~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~ 158 (237)
..+.++|||+|||+++|+++|+.+|++||.|..+ .+....+++++|||||+|.+.++|.+|| .||++.|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3457899999999999999999999999998764 1211236889999999999999999999 79999999999
Q ss_pred eEEEeCCCCCC
Q 041633 159 LKVLPKRTNVP 169 (237)
Q Consensus 159 i~V~~a~~~~~ 169 (237)
|+|.+|++..+
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 138
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=117.40 Aligned_cols=75 Identities=31% Similarity=0.480 Sum_probs=67.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||+++|+++|+.+|++||.|..| +.++ +++ ||||+|.+.++|.+||.|+++.|.|+.|+|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 46899999999999999999999999999987 4454 454 99999999999999999999999999999998865
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 139
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=3.6e-18 Score=128.40 Aligned_cols=78 Identities=24% Similarity=0.402 Sum_probs=72.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCee--EEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVN--RVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+++|+++|+++|++| .|. .|+|+.++.|+++|||||+|.+.++|++||.+++..|.||.|+|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 457899999999999999999999999 677 89999998899999999999999999999977889999999999988
Q ss_pred C
Q 041633 165 R 165 (237)
Q Consensus 165 ~ 165 (237)
.
T Consensus 119 ~ 119 (126)
T 2hgm_A 119 S 119 (126)
T ss_dssp C
T ss_pred C
Confidence 5
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=2e-17 Score=134.88 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=75.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|| .+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 357899999999999999999999999999999999998 7999999999999999999999 89999999999999998
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.7e-17 Score=122.42 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4789999999999999999999999999999999865 456899999999999999999 7999999999999999975
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 3
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=121.64 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=69.3
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC--CceeCCeeeEE
Q 041633 86 EADSRSVFVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN--ESELHGRQLKV 161 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~--g~~l~g~~i~V 161 (237)
..+.++|||+|||++ +|+++|+.+|++||.|..|.|++ ++|||||+|.+.++|..|+ .|+ +..|.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456899999999998 99999999999999999999974 4799999999999999999 675 46699999999
Q ss_pred EeCCCC
Q 041633 162 LPKRTN 167 (237)
Q Consensus 162 ~~a~~~ 167 (237)
.+|+..
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999754
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.6e-17 Score=130.75 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=74.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++|+++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+||..+++.|.|+.|.|.+|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 346899999999999999999999999999999999998 7999999999999999999999768999999999999997
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
++.
T Consensus 182 ~k~ 184 (196)
T 1l3k_A 182 SKQ 184 (196)
T ss_dssp ---
T ss_pred Chh
Confidence 654
No 144
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=114.78 Aligned_cols=76 Identities=21% Similarity=0.397 Sum_probs=69.4
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..+.++|||+|| ++|+++|+.+|++||.|..|.|. +++|||||+|.+.++|.+|| .||++.|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 346789999996 89999999999999999999985 45899999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+++.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.8e-18 Score=123.29 Aligned_cols=75 Identities=24% Similarity=0.262 Sum_probs=69.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||+.+|+++|+.+|++||.|..|.|+. ++|||||+|.+.++|++|+ .||++.|.|+.|.|.++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 367999999999999999999999999999999874 4789999999999999999 8999999999999999965
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.2e-17 Score=127.51 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=73.3
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
.....++|||+|||+++|+++|+.+|++||.|..|+|+.+ ++|||||+|.+.++|..|+ .||++.|.|++|+|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999876 5899999999999999999 7999999999999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
++++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 147
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.3e-17 Score=131.17 Aligned_cols=81 Identities=22% Similarity=0.394 Sum_probs=76.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+|.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3468999999999999999999999999999999999888999999999999999999999 799999999999999996
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 53
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=4.7e-17 Score=130.03 Aligned_cols=81 Identities=21% Similarity=0.520 Sum_probs=75.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+++|+++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+||.+++..|.|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 457899999999999999999999999999999999998 7999999999999999999999779999999999999986
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 91 ~~ 92 (196)
T 1l3k_A 91 SR 92 (196)
T ss_dssp C-
T ss_pred Cc
Confidence 54
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=9e-17 Score=124.81 Aligned_cols=79 Identities=25% Similarity=0.458 Sum_probs=75.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
.++|||+|||+++++++|+.+|++||.|..|.++.++ +++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999998 8999999999999999999999 7999999999999999975
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-16 Score=124.23 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=76.3
Q ss_pred ccCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 85 EEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 85 ~~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.....++|||+|||+.+|+++|+.+|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34457899999999999999999999999999999999997 7999999999999999999999 799999999999999
Q ss_pred eCC
Q 041633 163 PKR 165 (237)
Q Consensus 163 ~a~ 165 (237)
+|+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-16 Score=124.35 Aligned_cols=79 Identities=28% Similarity=0.424 Sum_probs=74.4
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCCCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRTNV 168 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~~~ 168 (237)
++|||+|||+++|+++|+.+|++||.|..|.|+.+++++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999999988889999999999999999999 899999999999999997543
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1.2e-16 Score=129.52 Aligned_cols=82 Identities=22% Similarity=0.436 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999997 7999999999999999999999 79999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
.+++
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=6.7e-17 Score=125.94 Aligned_cols=80 Identities=26% Similarity=0.395 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
+.++|||+|||+++++++|+.+|++||.|..|.|+.++ +++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999987 7999999999999999999999 799999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=4.3e-17 Score=127.03 Aligned_cols=80 Identities=25% Similarity=0.498 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||+++|+++|+.+|++||.|..+.|+.++ ++.++|||||+|.+.++|.+|+.+++..|.|+.|+|.+|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46799999999999999999999999999999999997 79999999999999999999999999999999999999976
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=8.2e-17 Score=113.23 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=68.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||+++++++|+.+|++| .|..|+|. +++|||||+|.+.++|.+|+ .||+..+.|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 99999885 56899999999999999999 7999999999999999965
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.7e-16 Score=127.88 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||+++|+++|+.+|++||.|..|+|+++.+++++|||||+|.+.++|.+|+.+.+..|.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999999998889999999999999999999996656799999999999865
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=115.14 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEE-EEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRV-TILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v-~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+++++++|+.+|++||.|..| .|+.++. .+.|||+|.+.++|.+|+ .||++.|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346899999999999999999999999999999 4777652 234999999999999999 79999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 158
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-16 Score=119.29 Aligned_cols=77 Identities=12% Similarity=0.210 Sum_probs=68.6
Q ss_pred CeEEEecC----CCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCC----HHH----HHHHHH---hCCce
Q 041633 90 RSVFVGNV----DYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLE----IDA----VQEALQ---LNESE 153 (237)
Q Consensus 90 ~~ifV~nL----~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~----~~~----a~~al~---l~g~~ 153 (237)
.+|||+|| |+.+++..|+.+|++||+|.+|.++.|+ ||.++|||||+|.+ ++. |.+|+. +++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999 89999999999995 322 677763 79999
Q ss_pred eCCeeeEEEeCCC
Q 041633 154 LHGRQLKVLPKRT 166 (237)
Q Consensus 154 l~g~~i~V~~a~~ 166 (237)
|.|+.|+|..-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 159
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=9.1e-17 Score=113.46 Aligned_cols=76 Identities=26% Similarity=0.334 Sum_probs=62.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
.+..+|||+|||+++|+++|+.+|++||.|.+|+|+.+ ++|||||+|.+.++|.++... ...+.|+.|.|.+|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEcCC
Confidence 45789999999999999999999999999999999874 699999999999998843221 3345699999999976
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 84 k 84 (89)
T 3d2w_A 84 K 84 (89)
T ss_dssp -
T ss_pred C
Confidence 4
No 160
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7e-17 Score=113.47 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=66.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTN 167 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~~ 167 (237)
..++|||+|||+++|+++|+.+|++||.|..|+|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|+|.++.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 4689999999999999999999999999999999864 689999999999999865432 35669999999999764
Q ss_pred C
Q 041633 168 V 168 (237)
Q Consensus 168 ~ 168 (237)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.9e-16 Score=123.92 Aligned_cols=78 Identities=23% Similarity=0.500 Sum_probs=74.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 346899999999999999999999999999999999997 8999999999999999999999 79999999999999987
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.7e-17 Score=119.06 Aligned_cols=76 Identities=16% Similarity=0.300 Sum_probs=69.0
Q ss_pred CCCCeEEE--ecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcee-----CCee
Q 041633 87 ADSRSVFV--GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESEL-----HGRQ 158 (237)
Q Consensus 87 ~~~~~ifV--~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l-----~g~~ 158 (237)
.+.++||| +||++++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+ .|||+.| .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 45789999 77999999999999999999999998864 3799999999999999999 8999998 6899
Q ss_pred eEEEeCCCC
Q 041633 159 LKVLPKRTN 167 (237)
Q Consensus 159 i~V~~a~~~ 167 (237)
|.|.+++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999754
No 163
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=2.8e-16 Score=125.71 Aligned_cols=82 Identities=22% Similarity=0.476 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999998 8999999999999999999999 79999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
+++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 164
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.6e-16 Score=128.27 Aligned_cols=79 Identities=20% Similarity=0.408 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~~ 166 (237)
..++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +.++|||||+|.+.++|.+|| .|||+.|+|++|+|.+|.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45799999999999999999999999999999999886 347999999999999999999 8999999999999999976
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=115.50 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=65.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-C---CCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F---GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
...++|||+|||+++|+++|+.+|++||.|. +.++.++ + |+++|||||+|.+.++|++|| .|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3478999999999999999999999999999 8888776 4 799999999999999999999 773 467777766
Q ss_pred EeCC
Q 041633 162 LPKR 165 (237)
Q Consensus 162 ~~a~ 165 (237)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=3.8e-16 Score=117.57 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=67.9
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeE-EEEEeCCHHHHHHHH-HhCCceeCC--eeeEEEeCC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF-AYVEFLEIDAVQEAL-QLNESELHG--RQLKVLPKR 165 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~al-~l~g~~l~g--~~i~V~~a~ 165 (237)
-.|||+||++.+|+++|+.+|++||.|.+|.|... .+|| |||+|.+.++|.+|+ .|||..|.| +.|+|.+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 46889999999999999999999999999988763 3677 999999999999999 899999988 899999998
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
+.
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.8e-16 Score=122.29 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=73.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC---CeeeEEE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH---GRQLKVL 162 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~---g~~i~V~ 162 (237)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+++|+++|||||+|.+.++|.+|+ .||+..+. +++|+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3578999999999999999999999999999999999988999999999999999999999 89998776 4999999
Q ss_pred eCC
Q 041633 163 PKR 165 (237)
Q Consensus 163 ~a~ 165 (237)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 983
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=2.1e-16 Score=110.43 Aligned_cols=71 Identities=31% Similarity=0.579 Sum_probs=66.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSC----G-------TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHG 156 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g 156 (237)
+.++|||+|||+++++++|+.+|++| | .|..++++.+ +|||||+|.+.++|.+|+.||+..|.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 46899999999999999999999999 8 8999998754 799999999999999999999999999
Q ss_pred eeeEEEe
Q 041633 157 RQLKVLP 163 (237)
Q Consensus 157 ~~i~V~~ 163 (237)
+.|+|..
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=4.6e-16 Score=121.44 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCC--eeeEEEeCC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHG--RQLKVLPKR 165 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g--~~i~V~~a~ 165 (237)
-.+|||+||++.+|+++|+.+|++||.|.+|.|... .++|||||+|.+.++|..|+ .|||..|.| +.|+|.+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 357899999999999999999999999999998654 25799999999999999999 899999965 999999998
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=4.3e-16 Score=126.61 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=70.9
Q ss_pred CCCeEEEecCC-CCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVD-YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~-~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
++++|||+||| +.+|+++|+.+|++||.|.+|+|+.++ +|||||+|.+.++|++|+ .|||+.|.|+.|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 47899999999 899999999999999999999998753 799999999999999999 799999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=8.7e-16 Score=119.56 Aligned_cols=79 Identities=28% Similarity=0.478 Sum_probs=74.5
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCC--eeeEE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHG--RQLKV 161 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g--~~i~V 161 (237)
....++|||+|||..+++++|+.+|++||.|..+.++.++ +++++|||||+|.+.++|.+|+ .||+..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999998 8999999999999999999999 799999987 99999
Q ss_pred EeC
Q 041633 162 LPK 164 (237)
Q Consensus 162 ~~a 164 (237)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 172
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=109.21 Aligned_cols=71 Identities=18% Similarity=0.344 Sum_probs=63.6
Q ss_pred CCCe-EEEecCCCCCCHHH----HHHHhhcC-CCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 88 DSRS-VFVGNVDYACTPEE----VQQHFQSC-GTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 88 ~~~~-ifV~nL~~~~t~~~----L~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
+..+ |||+|||+.+++++ |+++|++| |.|..| ++ |||||.|.+.++|++|+ .|+|..|.||+|+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 4556 99999999999988 55899999 599888 23 99999999999999999 8999999999999
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
|.+|+.+
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9999765
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=5.6e-16 Score=125.61 Aligned_cols=80 Identities=31% Similarity=0.446 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..++|||+|||+++|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999988 7999999999999999999999 699999999999999876
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=8e-16 Score=114.81 Aligned_cols=76 Identities=21% Similarity=0.397 Sum_probs=69.2
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
..+.++|||+|| ++|+++|+.+|++||.|..|.|. .++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346789999996 69999999999999999999986 46899999999999999999 89999999999999999
Q ss_pred CCCC
Q 041633 165 RTNV 168 (237)
Q Consensus 165 ~~~~ 168 (237)
++..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8653
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=2.3e-15 Score=109.51 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCeEEEecCCC-----CCCHHHHHHHhhcCCCeeEEEEeeCC-C-CCceeEEEEEeCCHHHHHHHH-HhCCceeCCee
Q 041633 87 ADSRSVFVGNVDY-----ACTPEEVQQHFQSCGTVNRVTILTDK-F-GQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQ 158 (237)
Q Consensus 87 ~~~~~ifV~nL~~-----~~t~~~L~~~F~~~G~i~~v~i~~~~-~-g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~ 158 (237)
.++++|+|.||.. +-++++|+.+|++||.|.+|.|+.++ + ++++|||||+|.+.++|.+|+ .|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 23789999999999999999999986 3 689999999999999999999 89999999999
Q ss_pred eEEEeCCC
Q 041633 159 LKVLPKRT 166 (237)
Q Consensus 159 i~V~~a~~ 166 (237)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999964
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=1.4e-15 Score=118.01 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCee--eEEE
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQ--LKVL 162 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~--i~V~ 162 (237)
...++|||+|||+.+++++|+.+|++||.|..++++.++ +|.++|||||+|.+.++|.+|+ .|||..|.|+. |+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 457899999999999999999999999999999999988 7999999999999999999999 79999999965 8888
Q ss_pred eC
Q 041633 163 PK 164 (237)
Q Consensus 163 ~a 164 (237)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=113.95 Aligned_cols=72 Identities=26% Similarity=0.353 Sum_probs=65.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeE-EEEEeCCHHHHHHHH-HhCCceeCC--eeeEEEeCCC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF-AYVEFLEIDAVQEAL-QLNESELHG--RQLKVLPKRT 166 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~al-~l~g~~l~g--~~i~V~~a~~ 166 (237)
.|||+||++.+|+++|+.+|++||.|..|+|.. + .|| |||+|.+.++|..|+ .|||..|.| +.|+|.+|++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 468999999999999999999999999999865 2 386 999999999999999 899999987 6899999986
Q ss_pred C
Q 041633 167 N 167 (237)
Q Consensus 167 ~ 167 (237)
.
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 5
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=5.1e-16 Score=120.89 Aligned_cols=78 Identities=23% Similarity=0.520 Sum_probs=72.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRT 166 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~~ 166 (237)
+.++|||+|||+++|+++|+.+|++||.|..|+|+.++ +|+++|||||+|.+.++|.+|+. +++.+.|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 36899999999999999999999999999999999997 79999999999999999999996 25789999999998864
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.3e-15 Score=119.59 Aligned_cols=77 Identities=22% Similarity=0.441 Sum_probs=70.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
...++|||+|||+.+|+++|+.+|++||.|..+ ..++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+|.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 456899999999999999999999999987655 447889999999999999999999 799999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.8e-15 Score=118.47 Aligned_cols=80 Identities=25% Similarity=0.476 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CC--CceeEEEEEeCCHHHHHHHH-HhCCceeC---CeeeE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FG--QPKGFAYVEFLEIDAVQEAL-QLNESELH---GRQLK 160 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g--~~~g~afV~f~~~~~a~~al-~l~g~~l~---g~~i~ 160 (237)
..++|||+|||+++|+++|+++|++||.|..|+|+.++ ++ +++|||||+|.+.++|.+|+ .|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36899999999999999999999999999999999998 44 89999999999999999999 79998875 68889
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 9888654
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=7.7e-16 Score=127.53 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=70.0
Q ss_pred cCCCCeEEEecCCCCC---------CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCcee-
Q 041633 86 EADSRSVFVGNVDYAC---------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESEL- 154 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~---------t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l- 154 (237)
....++|||+||+..+ ++++|+.+|++||.|..|+|+. ++|||||+|.+.++|+.|+ .|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3467899999999998 7999999999999999999985 4899999999999999999 8999999
Q ss_pred -----------CCeeeEEEeCCCCCC
Q 041633 155 -----------HGRQLKVLPKRTNVP 169 (237)
Q Consensus 155 -----------~g~~i~V~~a~~~~~ 169 (237)
.|+.|.|.||+..+.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2.6e-15 Score=126.94 Aligned_cols=80 Identities=15% Similarity=0.333 Sum_probs=73.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 86 EADSRSVFVGNVDYACTPEEVQ----QHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
..+.++|||+|||+++|+++|+ .+|++||.|..|+|+. +++++|||||+|.+.++|.+|+ .||+..|.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3568999999999999999977 8999999999999875 6788999999999999999999 8999999999999
Q ss_pred EEeCCCC
Q 041633 161 VLPKRTN 167 (237)
Q Consensus 161 V~~a~~~ 167 (237)
|.+++..
T Consensus 84 v~~a~~~ 90 (282)
T 3pgw_A 84 IQYAKTD 90 (282)
T ss_pred EEEeccC
Confidence 9999654
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=5.3e-15 Score=125.15 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=77.6
Q ss_pred cCCCCeEEEecCCCCC-CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 86 EADSRSVFVGNVDYAC-TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~-t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
....++|||+|||+.+ ++++|+.+|++||.|..|.|+.+++|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999995 9999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred CCCCC
Q 041633 164 KRTNV 168 (237)
Q Consensus 164 a~~~~ 168 (237)
+.+..
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 97653
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=3.6e-15 Score=126.70 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=76.2
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCC--CCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEE
Q 041633 86 EADSRSVFVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKF--GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 162 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~ 162 (237)
....++|||+|||+. +|+++|+.+|++||.|..|+|+.+.. +.++|||||+|.+.++|.+|+.||+..|.|+.|.|.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVS 286 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEE
Confidence 345789999999999 99999999999999999999999875 999999999999999999999999999999999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
+|.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99864
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1.9e-14 Score=121.81 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..++|||+|||+++|+++|+.+|++||.|..+.|+.++ +|.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999999999999999999988 7999999999999999999999 899999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
+.
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=6.8e-15 Score=121.15 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=72.3
Q ss_pred CCCCeEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 87 ADSRSVFVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 87 ~~~~~ifV~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
.+.++|||+|||+ .+++++|+.+|++||.|..|+|+.++ +|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4679999999999 99999999999999999999998875 789999999999999999 79999999999999999
Q ss_pred CCC
Q 041633 165 RTN 167 (237)
Q Consensus 165 ~~~ 167 (237)
+..
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 754
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.4e-14 Score=122.40 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=70.7
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC-CeeeEEEe
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH-GRQLKVLP 163 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~-g~~i~V~~ 163 (237)
..+.++|||+|||..+++++|+.+|++||.|..|+|+.++ +|||||+|.+.++|.+|+ .||+..|. |+.|+|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3457899999999999999999999999999999998654 689999999999999999 79999999 99999999
Q ss_pred CC
Q 041633 164 KR 165 (237)
Q Consensus 164 a~ 165 (237)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.1e-15 Score=120.18 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=71.6
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEEeCC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKR 165 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~~a~ 165 (237)
....++|||+|||+++|+++|+.+|.+||.+..+.+....+++++|||||+|.+.++|.+|++|++..|.|+.|+|.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 34579999999999999999999999999876633332236889999999999999999999999999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 90 ~~ 91 (175)
T 1fje_B 90 GR 91 (175)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-14 Score=102.80 Aligned_cols=79 Identities=19% Similarity=0.321 Sum_probs=68.2
Q ss_pred cCCCCeEEEecCCCCCC-----------HHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCce
Q 041633 86 EADSRSVFVGNVDYACT-----------PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESE 153 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t-----------~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~ 153 (237)
..++++|+|.||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|+ .|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34688999999954432 5799999999999999966 444 37999999999999999999 899999
Q ss_pred eCCeeeEEEeCCCC
Q 041633 154 LHGRQLKVLPKRTN 167 (237)
Q Consensus 154 l~g~~i~V~~a~~~ 167 (237)
|.|+.|+|.++.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999999764
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=3.8e-15 Score=108.22 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=64.2
Q ss_pred EecCCCCCCHHHHHHHh------------hcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 94 VGNVDYACTPEEVQQHF------------QSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 94 V~nL~~~~t~~~L~~~F------------~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
+.||++.+++++|+++| ++||.|.+|.|+.+++++++|||||+|.+.++|.+|+ .|||..+.||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888888777666 9999999999998888899999999999999999999 8999999999999
Q ss_pred EEeC
Q 041633 161 VLPK 164 (237)
Q Consensus 161 V~~a 164 (237)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=7.6e-15 Score=117.68 Aligned_cols=76 Identities=29% Similarity=0.451 Sum_probs=71.1
Q ss_pred CCCeEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDY-ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~-~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
.+++|||+|||+ .+++++|+.+|++||.|..|+|+.++ +|||||+|.+.++|.+|+ .|++..|.|+.|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 368999999999 99999999999999999999998765 789999999999999999 799999999999999997
Q ss_pred CC
Q 041633 166 TN 167 (237)
Q Consensus 166 ~~ 167 (237)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.4e-14 Score=117.55 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=68.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCCCe--eEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCe----ee
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCGTV--NRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGR----QL 159 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i--~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~----~i 159 (237)
.+.++|||+|||+++|+++|+++|++||.| ..++++.++ +.++|||||+|.+.++|.+|| .||++.|.|+ ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 356799999999999999999999999999 899998776 456799999999999999999 8999999876 56
Q ss_pred EEEeC
Q 041633 160 KVLPK 164 (237)
Q Consensus 160 ~V~~a 164 (237)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.3e-14 Score=120.26 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=70.3
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeC
Q 041633 86 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPK 164 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a 164 (237)
....++|||+|||+++|+++|+.+|++||.|..|.|.+ ++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34568999999999999999999999999999999964 3799999999999999999 79999999999999999
Q ss_pred CC
Q 041633 165 RT 166 (237)
Q Consensus 165 ~~ 166 (237)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=2.6e-14 Score=121.41 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=69.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
..++|||+|||+.+++++|+.+|++|| .|..|.|+.++.+.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999998888889999999999999999999 699999999999999997
Q ss_pred CCC
Q 041633 166 TNV 168 (237)
Q Consensus 166 ~~~ 168 (237)
+..
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 643
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=4.1e-14 Score=118.72 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh-CCceeC---CeeeEEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QL-NESELH---GRQLKVL 162 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l-~g~~l~---g~~i~V~ 162 (237)
+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+.+|+++|||||+|.+.++|.+|+ .| ++..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 468999999999999999999999999999999999988999999999999999999999 78 555554 9999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 99753
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=4.4e-14 Score=110.31 Aligned_cols=75 Identities=29% Similarity=0.530 Sum_probs=67.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSC----G-------TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHG 156 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g 156 (237)
+.++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+.++++.+.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHHHhCCcEecC
Confidence 36899999999999999999999999 6 67777765 34899999999999999999999999999
Q ss_pred eeeEEEeCCCC
Q 041633 157 RQLKVLPKRTN 167 (237)
Q Consensus 157 ~~i~V~~a~~~ 167 (237)
+.|+|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999988654
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=2.5e-14 Score=114.65 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=70.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC-CeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH-GRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~-g~~i~V~~ 163 (237)
.+.++|||+|||..+++++|+.+|++|| .|..|+|+.+ .+|||||+|.+.++|.+|+ .||+..+. |+.|+|.+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 3578999999999999999999999999 9999999764 2799999999999999999 79999999 99999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9764
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=5.1e-14 Score=115.85 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=70.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC-CeeeEEEe
Q 041633 87 ADSRSVFVGNVDYACTPEEVQQHFQSCG-TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH-GRQLKVLP 163 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~L~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~-g~~i~V~~ 163 (237)
.+.++|||+|||+.+++++|+.+|++|| .|..|+|+.. .+|||||+|.+.++|.+|+ .|++..|. |+.|+|.+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 3468999999999999999999999999 9999999653 3789999999999999999 79999999 99999999
Q ss_pred CCCC
Q 041633 164 KRTN 167 (237)
Q Consensus 164 a~~~ 167 (237)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9864
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=6.7e-14 Score=111.74 Aligned_cols=76 Identities=29% Similarity=0.517 Sum_probs=67.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSC----G-------TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHG 156 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~----G-------~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g 156 (237)
..++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+||.||++.|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 36899999999999999999999999 5 5666655 356899999999999999999999999999
Q ss_pred eeeEEEeCCCCC
Q 041633 157 RQLKVLPKRTNV 168 (237)
Q Consensus 157 ~~i~V~~a~~~~ 168 (237)
+.|+|.++....
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999987643
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=7.7e-14 Score=101.42 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=69.3
Q ss_pred CCCCeEEEecC--CCCCC--------HHHHHHHhhcCCCeeEEEEeeCCC---CCceeEEEEEeCCHHHHHHHH-HhCCc
Q 041633 87 ADSRSVFVGNV--DYACT--------PEEVQQHFQSCGTVNRVTILTDKF---GQPKGFAYVEFLEIDAVQEAL-QLNES 152 (237)
Q Consensus 87 ~~~~~ifV~nL--~~~~t--------~~~L~~~F~~~G~i~~v~i~~~~~---g~~~g~afV~f~~~~~a~~al-~l~g~ 152 (237)
.+++.|.|.|+ |.... .++|+..|++||.|.+|.|++++. ++++||+||+|.+.++|.+|+ .|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 33332 368999999999999999998873 368999999999999999999 89999
Q ss_pred eeCCeeeEEEeCCC
Q 041633 153 ELHGRQLKVLPKRT 166 (237)
Q Consensus 153 ~l~g~~i~V~~a~~ 166 (237)
.+.||.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-12 Score=93.70 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=62.0
Q ss_pred CCeEEEecCC-------CCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeE
Q 041633 89 SRSVFVGNVD-------YACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLK 160 (237)
Q Consensus 89 ~~~ifV~nL~-------~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~ 160 (237)
.++|-|.-.. ..+++++|+.+|++||.|..|.|+ ++++|||||+|.+.++|..|+ .++ .+.+++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEE
Confidence 4566666443 458999999999999999999998 367999999999999999999 544 46899999
Q ss_pred EEeCCCCC
Q 041633 161 VLPKRTNV 168 (237)
Q Consensus 161 V~~a~~~~ 168 (237)
|.+++.++
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99998654
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=3.6e-13 Score=99.88 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=68.7
Q ss_pred CCCeEEEecCCC--C---CCHHHHHHHhhcCCCeeEEEEeeCCC-----CCceeEEEEEeCCHHHHHHHH-HhCCceeCC
Q 041633 88 DSRSVFVGNVDY--A---CTPEEVQQHFQSCGTVNRVTILTDKF-----GQPKGFAYVEFLEIDAVQEAL-QLNESELHG 156 (237)
Q Consensus 88 ~~~~ifV~nL~~--~---~t~~~L~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~a~~al-~l~g~~l~g 156 (237)
+++.|+|.|+-. + --+++|+..|++||.|.+|.|+.++. ++++||+||+|.+.++|.+|+ .|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999842 1 23689999999999999999998752 467899999999999999999 899999999
Q ss_pred eeeEEEeCCC
Q 041633 157 RQLKVLPKRT 166 (237)
Q Consensus 157 ~~i~V~~a~~ 166 (237)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998853
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.6e-12 Score=113.06 Aligned_cols=75 Identities=17% Similarity=0.339 Sum_probs=65.1
Q ss_pred cCCCCeEEEec--CCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC---Ce--
Q 041633 86 EADSRSVFVGN--VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH---GR-- 157 (237)
Q Consensus 86 ~~~~~~ifV~n--L~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~---g~-- 157 (237)
..++++|||+| |++.+|+++|+++|++||.|..|.+.. +||||||+|.+.++|++|+ .|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45689999999 688999999999999999999987753 4799999999999999999 89999873 45
Q ss_pred eeEEEeCC
Q 041633 158 QLKVLPKR 165 (237)
Q Consensus 158 ~i~V~~a~ 165 (237)
.|.|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 67788773
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.8e-11 Score=90.15 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=64.4
Q ss_pred CCCCeEEEecCCCCC----------CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 87 ADSRSVFVGNVDYAC----------TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~----------t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
.+++.|.+.|+=... -+++|+..|++||.|.+|.|.++. .+||+||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357789999874322 235789999999999999987653 5899999999999999999 89999999
Q ss_pred CeeeEEEeCC
Q 041633 156 GRQLKVLPKR 165 (237)
Q Consensus 156 g~~i~V~~a~ 165 (237)
||.|+|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999984
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=7.9e-11 Score=82.26 Aligned_cols=74 Identities=28% Similarity=0.385 Sum_probs=63.6
Q ss_pred CCCCeEEEecCCC----CCCH----HHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCee
Q 041633 87 ADSRSVFVGNVDY----ACTP----EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQ 158 (237)
Q Consensus 87 ~~~~~ifV~nL~~----~~t~----~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~ 158 (237)
.+..||+|..++. ++.. .+|...|.+||.|..++|+.++ +||+|.+.++|.+|+.|||..+.||.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 3567999988772 3333 5789999999999999998764 89999999999999999999999999
Q ss_pred eEEEeCCCC
Q 041633 159 LKVLPKRTN 167 (237)
Q Consensus 159 i~V~~a~~~ 167 (237)
|+|..+++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999753
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=4e-10 Score=83.39 Aligned_cols=75 Identities=9% Similarity=0.055 Sum_probs=65.5
Q ss_pred cCCCCeEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCC-HHHHHHHH-Hh--CCceeCCeeeE
Q 041633 86 EADSRSVFVGNVDYA-CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE-IDAVQEAL-QL--NESELHGRQLK 160 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~-~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~al-~l--~g~~l~g~~i~ 160 (237)
-.+++.|||+||++. ++.++|+.+|++||.|..|.++.+. -.|||.|.+ ..+|..|+ .+ .+..|.|..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 346889999999999 9999999999999999999998775 369999999 88999999 77 47788998888
Q ss_pred EEeCC
Q 041633 161 VLPKR 165 (237)
Q Consensus 161 V~~a~ 165 (237)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=9.1e-10 Score=77.25 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=62.8
Q ss_pred cCCCCeEEEecCCCC-----CCH----HHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCC
Q 041633 86 EADSRSVFVGNVDYA-----CTP----EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHG 156 (237)
Q Consensus 86 ~~~~~~ifV~nL~~~-----~t~----~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g 156 (237)
..+..||+|..++.. +.. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||.|+|..+.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 456789999988743 222 4689999999999999998764 999999999999999999999999
Q ss_pred eeeEEEeCC
Q 041633 157 RQLKVLPKR 165 (237)
Q Consensus 157 ~~i~V~~a~ 165 (237)
|.|+|.+..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999764
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=6.5e-09 Score=84.72 Aligned_cols=65 Identities=26% Similarity=0.255 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhcCCCeeEEEEeeCC-----CCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEeCC
Q 041633 101 CTPEEVQQHFQSCGTVNRVTILTDK-----FGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLPKR 165 (237)
Q Consensus 101 ~t~~~L~~~F~~~G~i~~v~i~~~~-----~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~a~ 165 (237)
-.+++|...|++||.|.++.|+.+. +++++|++||+|.+.++|.+|+ .|||..+.||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999998554 3589999999999999999999 899999999999999984
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=4.7e-07 Score=64.87 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=65.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcC-----CCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSC-----GTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKV 161 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V 161 (237)
..++|-+-|||..++...|+.++.++ |.|..|.+..+ -+-|+|+|.+...|-+|. .|+|..|.|+.|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 36888899999999999999999999 99999998877 466999999999999998 99999999999999
Q ss_pred EeC
Q 041633 162 LPK 164 (237)
Q Consensus 162 ~~a 164 (237)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 743
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=0.00012 Score=51.92 Aligned_cols=73 Identities=25% Similarity=0.236 Sum_probs=62.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhc-----CCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCeeeEEE
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQS-----CGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 162 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~-----~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~~i~V~ 162 (237)
..++|.|.|||+.+.++.|.-+|+. -|.|..+.... +-|+|+|.+...|++.|+...+.|++..|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 3689999999999999999999986 25888887742 57999999999999999777789999999998
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
+..+.
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 86544
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=0.00012 Score=52.08 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=61.4
Q ss_pred CCeEEEecCCCCC-C----HHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEE
Q 041633 89 SRSVFVGNVDYAC-T----PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVL 162 (237)
Q Consensus 89 ~~~ifV~nL~~~~-t----~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~ 162 (237)
.++|+|.||+..+ + .+.++.+|.+|+++....+.+. -.-..|.|.++++|.+|. .||+..++|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 5789999998865 2 2577999999999888766643 234689999999999998 899999999999999
Q ss_pred eCCCC
Q 041633 163 PKRTN 167 (237)
Q Consensus 163 ~a~~~ 167 (237)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99744
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0015 Score=47.67 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCC-eeeEEEeC
Q 041633 88 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHG-RQLKVLPK 164 (237)
Q Consensus 88 ~~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g-~~i~V~~a 164 (237)
..+-|.|-+.|+.. ...|..+|++||.|.+.... .....-.|.|.++.+|++||..||..|.+ -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 35788899999886 46678899999999887762 23679999999999999999999999985 67888875
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.25 E-value=0.0024 Score=44.37 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=55.4
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-C-C-CceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F-G-QPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~-g-~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
.+|.|++||+..|++++.+.++.+..+.....+..+ + + ..-.-|||.|.+.+++.... .++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999999887777776665 3 2 34567999999999999988 89999874
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.17 E-value=0.0016 Score=45.59 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=43.5
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-Hh
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QL 149 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l 149 (237)
+-++| ++|.++...+|..+|+.||.| .|+++.|. .|||.|.+++.|..|+ .+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 44555 999999999999999999954 66676653 7999999999999998 45
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.00 E-value=0.0012 Score=46.44 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=44.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC
Q 041633 91 SVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN 150 (237)
Q Consensus 91 ~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~ 150 (237)
.||+-++|.++...+|..+|+.|| -..|+++.|. .|||.|.+++.|..|+ .+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 344449999999999999999999 4577777664 7999999999999999 454
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.59 E-value=0.0021 Score=47.49 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=55.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEeeC--------C-CC-----CceeEEEEEeCCHHHHHHHHHhCCce
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNR-VTILTD--------K-FG-----QPKGFAYVEFLEIDAVQEALQLNESE 153 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~-v~i~~~--------~-~g-----~~~g~afV~f~~~~~a~~al~l~g~~ 153 (237)
...|.|-+.|++.+. .+..+|++||.|.. +.+... + .. ...+...|+|.++.+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 356777799888764 46678999999855 221110 0 00 12567799999999999999999999
Q ss_pred eCCeeeEEEeCC
Q 041633 154 LHGRQLKVLPKR 165 (237)
Q Consensus 154 l~g~~i~V~~a~ 165 (237)
|.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999999998874
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.56 E-value=0.0014 Score=58.81 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=45.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCcee
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESEL 154 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l 154 (237)
.++|||. .|..+++.+|.++|++||+|.++.+-.++ .-||.|+|.+.+++..++.......
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSSCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhccCCCc
Confidence 5899997 79999999999999999999999886543 4799999999999998874433333
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.67 E-value=0.015 Score=40.64 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=48.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-C-C-CceeEEEEEeCCHHHHHHHH-HhCCceeC
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-F-G-QPKGFAYVEFLEIDAVQEAL-QLNESELH 155 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~-~-g-~~~g~afV~f~~~~~a~~al-~l~g~~l~ 155 (237)
+-+|.|+.||+.+|++++.+.++..-.+.....+..+ + + ..-.-|||.|.+.+++.... ..+|+.+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4589999999999999988777765444333333322 2 1 12345899999999999998 89998874
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.02 E-value=0.021 Score=43.06 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=27.0
Q ss_pred EEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCc
Q 041633 118 RVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNES 152 (237)
Q Consensus 118 ~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~ 152 (237)
.++|+.+.. +++|||||+|.+.++|++|+ .+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 456666653 68999999999999999999 66643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.58 E-value=0.024 Score=42.40 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=35.5
Q ss_pred CCceeEEEEEeCCHHHHHHHH-Hh-CCceeCCeeeEEEeCCC
Q 041633 127 GQPKGFAYVEFLEIDAVQEAL-QL-NESELHGRQLKVLPKRT 166 (237)
Q Consensus 127 g~~~g~afV~f~~~~~a~~al-~l-~g~~l~g~~i~V~~a~~ 166 (237)
...+|+++|+|.+.+.|++|+ .+ |+..+.| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 357899999999999999999 89 9999999 999998864
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.36 E-value=1.6 Score=39.40 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=42.9
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhC
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLN 150 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~ 150 (237)
+.++|+ +|..+...+|.+.|+.||. ..|+++.+ ..|||.|.+.+.|..++ .+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 455665 8889999999999999995 46666543 47999999999999999 664
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=71.29 E-value=0.98 Score=31.82 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCeEEEecCCCCCCHHH
Q 041633 87 ADSRSVFVGNVDYACTPEE 105 (237)
Q Consensus 87 ~~~~~ifV~nL~~~~t~~~ 105 (237)
....+|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999998763
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.26 E-value=71 Score=24.31 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=38.6
Q ss_pred eEEEecCCCC---------CCHHHHHHHh--hcCCCeeEEEEeeCCCCCceeEEEEEeC-CHHHHHHHHHhC
Q 041633 91 SVFVGNVDYA---------CTPEEVQQHF--QSCGTVNRVTILTDKFGQPKGFAYVEFL-EIDAVQEALQLN 150 (237)
Q Consensus 91 ~ifV~nL~~~---------~t~~~L~~~F--~~~G~i~~v~i~~~~~g~~~g~afV~f~-~~~~a~~al~l~ 150 (237)
++.|-|+|.. .....|++.| ..|.++. |+.+.++.| +.|++.|.|. +..-...|+.++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHHHH
Confidence 4556677651 3457899977 8999875 444444433 6899999998 455556666554
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.92 E-value=44 Score=21.10 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=39.9
Q ss_pred eEEEecC-CCCCCHHHHHHHhhcCC-----CeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHH-HhCCceeCCeeeEEEe
Q 041633 91 SVFVGNV-DYACTPEEVQQHFQSCG-----TVNRVTILTDKFGQPKGFAYVEFLEIDAVQEAL-QLNESELHGRQLKVLP 163 (237)
Q Consensus 91 ~ifV~nL-~~~~t~~~L~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al-~l~g~~l~g~~i~V~~ 163 (237)
++||..= ...++..+|..++..-+ .|-.|.|. ..|.||+-... .+..++ .|++..+.|+.++|..
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEE
Confidence 4555321 22356667777776544 34566663 35888888654 466677 8999999999999987
Q ss_pred CC
Q 041633 164 KR 165 (237)
Q Consensus 164 a~ 165 (237)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 225
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=31.17 E-value=61 Score=27.98 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=39.9
Q ss_pred eEEEecCCCCC----CHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCCe
Q 041633 91 SVFVGNVDYAC----TPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHGR 157 (237)
Q Consensus 91 ~ifV~nL~~~~----t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g~ 157 (237)
--+||||..-. ....+.++..+||.|..+++. +.-+|...+++.++.++.-+...+.++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 34789886432 135677788899999888872 345677789999998884444444433
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.33 E-value=71 Score=25.94 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHhhcCCCeeEEEE
Q 041633 89 SRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 121 (237)
Q Consensus 89 ~~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i 121 (237)
..-+.|+|||+.++..-|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356789999999999999999987 55554444
No 227
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=24.97 E-value=15 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=9.9
Q ss_pred chHHHHHHHHHHHHH
Q 041633 36 AVKELDEMKKRLKEM 50 (237)
Q Consensus 36 ~~~e~~~~~~~~~~~ 50 (237)
+++++++|+.||+.+
T Consensus 24 eEedi~~MqsRLaAL 38 (40)
T 2xze_Q 24 EEEALEAMQSRLATL 38 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 345677777777754
No 228
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=23.15 E-value=32 Score=29.51 Aligned_cols=56 Identities=23% Similarity=0.154 Sum_probs=35.5
Q ss_pred EEecCCCC---CCHHHHHHHhhcCCCeeEEEEeeCCCCCceeEEEEEeCCHHHHHHHHHhCCceeCC
Q 041633 93 FVGNVDYA---CTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEIDAVQEALQLNESELHG 156 (237)
Q Consensus 93 fV~nL~~~---~t~~~L~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~al~l~g~~l~g 156 (237)
+|||+..- -....+.++..+||+|..+++. +.-+|...+++.++.++.-++..+.+
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~i~~vl~~~~~~f~~ 78 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA--------WTPVVVLNGLAAVREALVTHGEDTAD 78 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET--------TEEEEEEEHHHHHHHHHTTTGGGSCB
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC--------CeeEEEECCHHHHHHHHHhCChhhcC
Confidence 56776432 2335577888899999888762 22345667888888777444444433
No 229
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.71 E-value=36 Score=27.80 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.3
Q ss_pred CeEEEecCCCCCCHHHHHHHhhcCCCeeEEEEe
Q 041633 90 RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 122 (237)
Q Consensus 90 ~~ifV~nL~~~~t~~~L~~~F~~~G~i~~v~i~ 122 (237)
..+.|+|||+.++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765555554443
Done!