BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041634
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 46/285 (16%)
Query: 52 DTVLLMATYTKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQHETATRRLVRKIDYNGNT 111
+T L +AT K++++V +LL LPD + + +TR +K I L + Y
Sbjct: 301 NTALHVATRKKRAEIV-ELLLSLPDTNANTLTRDHKTALDIAEGLP---LSEESSYIKEC 356
Query: 112 ILHMAGIKIKDYGSEKMEGPALLLRDELLWYERVKSVTMAHFLNHGNNMGFTPEELFATA 171
+ ++ + ++ P RDEL +VT N++ E+ T
Sbjct: 357 LARSGALR-----ANELNQP----RDELR-----STVTQIK-----NDVHIQLEQTKRTN 397
Query: 172 NN------ELRAQSKEWLIRTTEGCSVVA-------FAAAYTVPGGSDENTGYPILINHL 218
N ELR +E + T +VVA FAA +TVPGG D N G +++
Sbjct: 398 KNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRA 456
Query: 219 FFVAFTVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMV 278
F F + + L+L SLA VV ++++ + E + NK++ L S+C V
Sbjct: 457 SFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLM-----WLASMC-TSV 510
Query: 279 AFIATILLMIKSEESW-AKIMLYTCTFIPVGVFALSYFPLYITKS 322
AF+A+ +++ + W A+++ I GV L Y+ KS
Sbjct: 511 AFLASSYIVVGRKNEWAAELVTVVGGVIMAGV--LGTMTYYVVKS 553
>sp|O44518|CYFIP_CAEEL Cytoplasmic FMR1-interacting protein homolog OS=Caenorhabditis
elegans GN=gex-2 PE=1 SV=4
Length = 1262
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 24 MIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLDELPD------Q 77
M+ K E +S RK L F H L K DL+ +L + D
Sbjct: 458 MLGKTESDMSNSTRKCVYVELQAFIHHTINEPLQKAVKHKKDLLASILQSVKDSISDAGN 517
Query: 78 SLDKMT-----RQNKA--GNTIQHETATRRLVRKIDYNGNTILHMAGIKIKDYGSEKMEG 130
L++MT +++ A G++ ++ R+ R+ G+T L+MA +++ S+K+ G
Sbjct: 518 ELNRMTDVKGKKKSSAPKGDSANSSSSDIRIPRRTAAPGSTQLYMARTQLESLISDKLCG 577
Query: 131 PALLLRDEL 139
+LR EL
Sbjct: 578 GKKILRKEL 586
>sp|Q7YR32|TRI10_PANTR Tripartite motif-containing protein 10 OS=Pan troglodytes GN=TRIM10
PE=3 SV=1
Length = 481
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 1 MSSIGIEDTDAKLKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATY 60
+S++G+ + D + ++Y + DE ++ +CR+ +HA + +D A Y
Sbjct: 88 VSTLGLGEEDVCQEHGEKIY--FFCEDDEMQLCVVCREAGEHATHTMRFLEDAA---APY 142
Query: 61 TKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQHETATRR 100
++ +K L + +++ + +R+NK + + +T+R
Sbjct: 143 REQIHKCLKRLRKEREETQEIQSRENKRMQVLLTQVSTKR 182
>sp|A5UUG7|MIAB_ROSS1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Roseiflexus sp. (strain RS-1) GN=miaB PE=3 SV=1
Length = 476
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 20 YNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMA---TYTKKSDLVIKLLDELPD 76
+ A M + V+EL R +PD L V D + +M T + DL+ K+ D +PD
Sbjct: 251 HPAWMTDRLIAAVAELPRCMPDINLPVQAGDDALLKIMRRGYTVQRYRDLIAKIRDAIPD 310
Query: 77 QSLDKMTRQNKAGNTIQHETATRRLVRKIDYN 108
SL G T + T+RL+ I ++
Sbjct: 311 VSLTTDVIVGHPGETRERFEGTKRLLEDIRFD 342
>sp|Q6LA20|MATK_DIAEN Maturase K OS=Dianella ensifolia GN=matK PE=3 SV=1
Length = 522
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 149 TMAHFLNHGNNMGFTPEELFATANNELRAQSKEWLIRTTEGCSVVAFAAAYTVPGGSDEN 208
+AH + +++ + P E+F N A K +IR + S+++ +D N
Sbjct: 30 ALAHDYSLNSSIFYEPMEIFGYDNKSSLALVKRLIIRIYQQNSLIS--------SVNDSN 81
Query: 209 TGYPILINHLFFVAFTVSDVLSLTFSLAAVVPFLSMLTSPF 249
+ NH F+ F S ++S +F + +PF L S F
Sbjct: 82 QNRLLWHNHFFYSHF-YSQMISESFGILVEIPFSLRLVSYF 121
>sp|Q9UDY6|TRI10_HUMAN Tripartite motif-containing protein 10 OS=Homo sapiens GN=TRIM10
PE=2 SV=3
Length = 481
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 1 MSSIGIEDTDAKLKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATY 60
+S++G+ + D + ++Y + DE ++ +CR+ +HA + +D A Y
Sbjct: 88 VSTLGLGEEDVCQEHGEKIY--FFCEDDEMQLCVVCREAGEHATHTMRFLEDAA---APY 142
Query: 61 TKKSDLVIKLLDELPDQSLDKMTRQNKAGNTIQHETATRR 100
++ +K L + ++ + +R+NK + + +T+R
Sbjct: 143 REQIHKCLKCLRKEREEIQEIQSRENKRMQVLLTQVSTKR 182
>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana
GN=At2g01680 PE=1 SV=1
Length = 532
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 19/166 (11%)
Query: 174 ELRAQSKEWLIRTTEGCSVVA-------FAAAYTVPGG---SDENTGYPILINHLFFVAF 223
ELR +E + TT +VVA F A + +PG + G + F F
Sbjct: 338 ELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVF 397
Query: 224 TVSDVLSLTFSLAAVVPFLSMLTSPFRLEDCKHSLPNKMILGFTFLLLSVCLMMV-AFIA 282
+ + SL SLA VV ++++ R + S+ NK L+ + C AF+A
Sbjct: 398 CLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNK-------LMWAACACTFGAFLA 450
Query: 283 TILLMIKSEESWAKIMLYTCTFIPVGVFALSYFPLYITKSVTRGLN 328
++ SW I + T P+ V L+ ++ + R N
Sbjct: 451 IAFAVVGKGNSWMAITI-TLLGAPILVGTLASMCYFVFRQRFRSGN 495
>sp|Q1MRS8|DNLJ_LAWIP DNA ligase OS=Lawsonia intracellularis (strain PHE/MN1-00)
GN=ligA PE=3 SV=1
Length = 682
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 13 LKINSELYNALMIKKDEQKVSELCRKVPDHALYVFTIHDDTVLLMATYTKKSDLVIKLLD 72
+ INS Y +L KK++Q+V EL RK +H Y++ DD + + Y K ++ L +
Sbjct: 1 MSINSPQY-SLPSKKEKQRVREL-RKFINHHNYLYYTLDDPEISDSEYDKAFQELLTLEN 58
Query: 73 ELPDQSLDKMTRQNKAGNTI 92
P + Q K GN I
Sbjct: 59 TFPSLKTNNSPTQ-KVGNNI 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,400,305
Number of Sequences: 539616
Number of extensions: 4989669
Number of successful extensions: 12144
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 12135
Number of HSP's gapped (non-prelim): 25
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)