BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041635
         (345 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
 pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
          Length = 238

 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 110 PLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWL 158
           PL      L A+   YP  +L  ++ + AG  LT L  R   AF   WL
Sbjct: 187 PLARXEKTLEALRPHYPEGRLARFVEEGAGHTLTPLXARVGLAFLEHWL 235


>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 80  RVFPERLPENEQNLPAIDVFICTADPKKEPPLEVMNTVLSAMA-LDYPSKKLHVYLSDDA 138
           R FP   P   + LP +D+ +    P    P ++++  L+A   + YP++   V L DD 
Sbjct: 128 RPFPR--PLQPEELPTVDILV----PSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDG 181

Query: 139 GS 140
           G+
Sbjct: 182 GT 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,851,379
Number of Sequences: 62578
Number of extensions: 312655
Number of successful extensions: 782
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 7
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)