Query 041635
Match_columns 345
No_of_seqs 173 out of 1315
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 4.6E-28 1.6E-32 259.0 24.3 220 17-335 64-286 (802)
2 1qg8_A Protein (spore coat pol 99.6 3.3E-15 1.1E-19 135.3 11.2 124 94-325 1-129 (255)
3 3bcv_A Putative glycosyltransf 99.6 5.9E-15 2E-19 132.2 12.2 110 92-309 3-112 (240)
4 2z86_A Chondroitin synthase; G 99.5 6.9E-14 2.4E-18 143.9 14.2 126 92-327 91-217 (625)
5 1xhb_A Polypeptide N-acetylgal 99.5 6.3E-14 2.2E-18 139.6 12.8 117 90-310 25-144 (472)
6 3ckj_A Putative uncharacterize 99.4 2.7E-13 9.2E-18 129.8 10.8 121 92-321 46-169 (329)
7 2d7i_A Polypeptide N-acetylgal 99.4 2.1E-13 7.3E-18 140.2 10.7 117 90-310 108-226 (570)
8 2ffu_A Ppgalnact-2, polypeptid 99.4 1.3E-13 4.5E-18 138.8 8.8 112 90-308 62-173 (501)
9 2z86_A Chondroitin synthase; G 99.4 4.6E-13 1.6E-17 137.7 12.6 124 92-327 373-497 (625)
10 3f1y_A Mannosyl-3-phosphoglyce 99.3 4.1E-12 1.4E-16 125.5 9.7 121 92-320 92-216 (387)
11 3l7i_A Teichoic acid biosynthe 99.2 9.9E-13 3.4E-17 138.5 0.0 111 94-310 2-112 (729)
12 4fix_A UDP-galactofuranosyl tr 99.1 1.6E-10 5.5E-15 121.3 8.0 118 92-310 178-298 (657)
13 2bo4_A Mannosylglycerate synth 98.8 8.5E-08 2.9E-12 95.1 14.8 43 261-307 73-119 (397)
14 2nxv_A ATP synthase subunits r 98.6 7E-08 2.4E-12 88.5 8.7 40 264-308 62-101 (249)
15 2fy7_A Beta-1,4-galactosyltran 98.3 5.5E-07 1.9E-11 85.3 6.9 40 93-138 64-106 (287)
16 2wvl_A Mannosyl-3-phosphoglyce 98.2 7.1E-06 2.4E-10 80.3 11.2 44 92-144 51-94 (391)
17 2zu9_A Mannosyl-3-phosphoglyce 98.1 1.7E-05 5.8E-10 78.5 12.0 41 263-306 144-184 (394)
18 1fo8_A Alpha-1,3-mannosyl-glyc 98.0 2.7E-05 9.1E-10 75.8 11.4 47 93-144 1-47 (343)
19 3q80_A 2-C-methyl-D-erythritol 67.1 9.5 0.00033 34.1 6.2 63 264-326 83-171 (231)
20 3tqd_A 3-deoxy-manno-octuloson 65.2 30 0.001 31.2 9.3 42 264-307 83-124 (256)
21 3d5n_A Q97W15_sulso; NESG, SSR 60.0 21 0.00072 30.4 6.8 40 263-306 72-112 (197)
22 3oam_A 3-deoxy-manno-octuloson 56.0 53 0.0018 29.1 9.1 43 263-308 75-118 (252)
23 4fcu_A 3-deoxy-manno-octuloson 52.9 77 0.0026 28.4 9.7 40 266-307 77-117 (253)
24 3k8d_A 3-deoxy-manno-octuloson 41.6 1.6E+02 0.0055 26.4 10.0 44 264-309 92-135 (264)
25 3f1c_A Putative 2-C-methyl-D-e 37.0 23 0.0008 31.2 3.5 44 264-307 85-131 (246)
26 2xwl_A 2-C-methyl-D-erythritol 35.2 60 0.002 27.5 5.7 39 264-306 79-118 (223)
27 2l9u_A Receptor tyrosine-prote 33.3 34 0.0012 22.2 2.7 15 25-39 19-33 (40)
28 1w55_A ISPD/ISPF bifunctional 31.0 82 0.0028 30.2 6.4 41 263-307 75-115 (371)
29 1e5k_A Molybdopterin-guanine d 28.4 59 0.002 27.7 4.5 38 263-305 78-116 (201)
30 3lw6_A FI08434P, beta-4-galact 27.8 1.4E+02 0.0049 27.9 7.2 33 261-295 96-128 (287)
31 3juk_A UDP-glucose pyrophospho 26.8 48 0.0017 29.5 3.8 51 248-308 97-151 (281)
32 4fce_A Bifunctional protein GL 24.9 1.3E+02 0.0043 28.6 6.6 43 262-308 83-126 (459)
33 2y6p_A 3-deoxy-manno-octuloson 24.6 90 0.0031 26.6 5.0 41 262-308 72-113 (234)
34 2wee_A MOBA-related protein; u 22.6 65 0.0022 26.5 3.6 40 263-305 80-120 (197)
35 2vsh_A TARI, 2-C-methyl-D-eryt 20.1 1E+02 0.0034 26.2 4.3 43 264-307 86-132 (236)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.96 E-value=4.6e-28 Score=259.02 Aligned_cols=220 Identities=23% Similarity=0.333 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCC-C-hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCcCCCCCC
Q 041635 17 ILNRLYSLIHVTALTSLIYYRVSSLASTPL-A-SLPAQLLVFALELLLSLLWLLNQAYLWNPVSRRVFPERLPENEQNLP 94 (345)
Q Consensus 17 ~~~R~~~~~~li~~~~YL~wR~~~~~~~~~-~-~~~~w~~~~~~E~~~~~~~~l~~~~~~~p~~r~~~~~~l~~~~~~~P 94 (345)
.+..+++++.++++++|++||++.+++... . +.++|+.++++|+++.+.+++..+..++|..|...++. .++.+|
T Consensus 64 ~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---~~~~~P 140 (802)
T 4hg6_A 64 VPRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---QPEELP 140 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---CTTTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---CccCCC
Confidence 344445555555669999999999998643 3 56778888899999999999999999999888755432 256789
Q ss_pred eeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccCCCccc
Q 041635 95 AIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTRCPKVY 174 (345)
Q Consensus 95 ~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r~p~~y 174 (345)
+|+|+||||| |+..++.+|+.|+++++||.++++|+|+|||++|.|.+.
T Consensus 141 ~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~---------------------------- 189 (802)
T 4hg6_A 141 TVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS---------------------------- 189 (802)
T ss_dssp CEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC----------------------------
T ss_pred cEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc----------------------------
Confidence 9999999999 998888999999999999999999999999999987421
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceEEEecc
Q 041635 175 FSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLVYVSRE 254 (345)
Q Consensus 175 f~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~yv~R~ 254 (345)
..|+..++..+.....+++..+ .++.|+.|+
T Consensus 190 -----------~d~~i~~~~~~~~~~l~~~~~~--------------------------------------~~v~~i~~~ 220 (802)
T 4hg6_A 190 -----------PDPELAQKAQERRRELQQLCRE--------------------------------------LGVVYSTRE 220 (802)
T ss_dssp -----------SSHHHHHHHHHHHHHHHHHHHH--------------------------------------HTCEEEECS
T ss_pred -----------CCHHHHHHHHhhhHHHHHHHHh--------------------------------------cCcEEEEec
Confidence 0122222211111111111110 125788887
Q ss_pred CCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc-CCCCCCcEEEEeCCceecCCCCCCcc
Q 041635 255 KRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL-DPKLSPSLAFVQFPQKFHNISSNDIY 333 (345)
Q Consensus 255 k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~-Dp~~g~~va~VQtPQ~F~n~~~~Dp~ 333 (345)
+ ++++|+||+|.|++. ++|++|+++|||+++. |++|++++.+|. ||+ +++||+|+.+.|. |++
T Consensus 221 ~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~~~-pd~L~~lv~~~~~dp~----v~~V~~~~~~~~~---~~~ 284 (802)
T 4hg6_A 221 R----NEHAKAGNMSAALER----LKGELVVVFDADHVPS-RDFLARTVGYFVEDPD----LFLVQTPHFFINP---DPI 284 (802)
T ss_dssp S----CCSHHHHHHHHHHHH----CCCSEEEECCTTEEEC-TTHHHHHHHHHHHSSS----CCEEECCCCBSSC---CHH
T ss_pred C----CCCcchHHHHHHHHh----cCCCEEEEECCCCCcC-hHHHHHHHHHHhcCCC----eEEEeccEEEeCC---chH
Confidence 5 457899999999998 8999999999999998 999999999996 888 8999999999985 554
Q ss_pred cc
Q 041635 334 DS 335 (345)
Q Consensus 334 ~~ 335 (345)
..
T Consensus 285 ~~ 286 (802)
T 4hg6_A 285 QR 286 (802)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.60 E-value=3.3e-15 Score=135.28 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=97.9
Q ss_pred CeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccCCCcc
Q 041635 94 PAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTRCPKV 173 (345)
Q Consensus 94 P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r~p~~ 173 (345)
|.|+|+||+|| ++ ..+.++|.|++++.||. ++|+|+|||++|.|.+.+.+. ++
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~~--~eiivvDd~S~d~t~~~~~~~----------~~----------- 53 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFSD--FELFIMDDNSNEETLNVIRPF----------LN----------- 53 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCCC--EEEEEEECSCCHHHHHHHGGG----------GG-----------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCCc--eEEEEEECCCCchHHHHHHHH----------hh-----------
Confidence 78999999999 77 58899999999999995 999999999999876433210 00
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceEEEec
Q 041635 174 YFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLVYVSR 253 (345)
Q Consensus 174 yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~yv~R 253 (345)
.+++.|+..
T Consensus 54 -----------------------------------------------------------------------~~~i~~i~~ 62 (255)
T 1qg8_A 54 -----------------------------------------------------------------------DNRVRFYQS 62 (255)
T ss_dssp -----------------------------------------------------------------------STTEEEEEC
T ss_pred -----------------------------------------------------------------------cCCEEEEec
Confidence 134677766
Q ss_pred cCCCCC----CCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc-CCCCCCcEEEEeCCceec
Q 041635 254 EKRPPH----PHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL-DPKLSPSLAFVQFPQKFH 325 (345)
Q Consensus 254 ~k~~g~----~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~-Dp~~g~~va~VQtPQ~F~ 325 (345)
+. ++. ...++++|+|.|++. ++|++|+++|+|.++. |++|.+++..|. +|+ +++|.+...+.
T Consensus 63 ~~-~~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~-~~~l~~~~~~~~~~~~----~~~v~~~~~~~ 129 (255)
T 1qg8_A 63 DI-SGVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIYM-PDRLLKMVRELDTHPE----KAVIYSASKTY 129 (255)
T ss_dssp CC-CSHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEEC-TTHHHHHHHHHHHCTT----CCEEEEEEEEE
T ss_pred cc-ccccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCccC-hHHHHHHHHHHHhCCC----ceEEEeceEEE
Confidence 51 000 134599999999998 8999999999999998 999999999998 677 67777766554
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.59 E-value=5.9e-15 Score=132.19 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=90.2
Q ss_pred CCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccCCC
Q 041635 92 NLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTRCP 171 (345)
Q Consensus 92 ~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r~p 171 (345)
..|.|+|+||+|| ++ ..+.++|.|++++.||. ++|+|+|||++|.|.+.+.+. ++
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~~--~eiIvvDd~S~d~t~~~~~~~----------~~--------- 57 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLSD--IEIILIDDESPDNCPKICDDY----------AA--------- 57 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSSS--EEEEEEECCCSSSHHHHHHHH----------HH---------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCCC--eEEEEEECCCCcCHHHHHHHH----------Hh---------
Confidence 3588999999999 77 57899999999999985 999999999999886544331 11
Q ss_pred cccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceEEE
Q 041635 172 KVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLVYV 251 (345)
Q Consensus 172 ~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~yv 251 (345)
..|++.++
T Consensus 58 ------------------------------------------------------------------------~~~~i~~i 65 (240)
T 3bcv_A 58 ------------------------------------------------------------------------QYPNIKVI 65 (240)
T ss_dssp ------------------------------------------------------------------------HCSSEEEE
T ss_pred ------------------------------------------------------------------------hCCCEEEE
Confidence 12456777
Q ss_pred eccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhcCC
Q 041635 252 SREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHLDP 309 (345)
Q Consensus 252 ~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~Dp 309 (345)
.. + ..++++|.|.|++. ++|++|+++|+|.++. |++|.+++..+.++
T Consensus 66 ~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~~-~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 66 HK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYVD-SDMYMTMYNVAQKY 112 (240)
T ss_dssp EC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCCC-TTHHHHHHHHHHHH
T ss_pred EC-C-----CCChHHHHHHHHHH----cCCCEEEEECCCCcCC-HHHHHHHHHHHHhc
Confidence 53 3 24599999999998 8999999999999998 99999999998753
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.52 E-value=6.9e-14 Score=143.86 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=101.2
Q ss_pred CCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccCCC
Q 041635 92 NLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTRCP 171 (345)
Q Consensus 92 ~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r~p 171 (345)
..|.|+|+||||| |+ ..+.++|.++++++||. .++|+|+|||+++.|.+.+.+ +.
T Consensus 91 ~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~--------------~~------ 145 (625)
T 2z86_A 91 IIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE--------------FE------ 145 (625)
T ss_dssp CCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------TT------
T ss_pred cCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------hh------
Confidence 3589999999999 86 68999999999999875 699999999999977543321 10
Q ss_pred cccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceEEE
Q 041635 172 KVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLVYV 251 (345)
Q Consensus 172 ~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~yv 251 (345)
..+++.|+
T Consensus 146 ------------------------------------------------------------------------~~~~i~~i 153 (625)
T 2z86_A 146 ------------------------------------------------------------------------SLLNIKYV 153 (625)
T ss_dssp ------------------------------------------------------------------------TTSCEEEE
T ss_pred ------------------------------------------------------------------------hcCCeEEE
Confidence 01236777
Q ss_pred eccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc-CCCCCCcEEEEeCCceecCC
Q 041635 252 SREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL-DPKLSPSLAFVQFPQKFHNI 327 (345)
Q Consensus 252 ~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~-Dp~~g~~va~VQtPQ~F~n~ 327 (345)
.+++ ..++|++|+|.|+.. ++|++|+++|+|+.+. |++|.+++..|. +|. +++|++.+.+.+.
T Consensus 154 ~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~~-~~~l~~~~~~~~~~~~----~~~~g~~~~~~~~ 217 (625)
T 2z86_A 154 RQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMAPN-PLWVQSYMELLAVDDN----VALIGPRKYIDTS 217 (625)
T ss_dssp EECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEEEC-TTHHHHHHHHHHHCTT----EEEECCEEEECCT
T ss_pred EeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCCCC-HHHHHHHHHHHhcCCc----eEEEEeeeeccCc
Confidence 7643 235799999999998 7999999999999997 999999999998 676 7888777666543
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.51 E-value=6.3e-14 Score=139.64 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=96.8
Q ss_pred CCCCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChh-hHHHHHHHHhhhccchhHHHHhCCcc
Q 041635 90 EQNLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSAL-TLLALRQACAFASSWLPFCRRFGIKT 168 (345)
Q Consensus 90 ~~~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~-t~~~l~ea~~~a~~W~~~c~~~~v~~ 168 (345)
++.+|.|+|+||+|| |+.+.+.++|.|++++.||...++|+|+|||+++. |.+.+.+.. +
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~----------~------ 85 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYV----------K------ 85 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHH----------H------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHH----------H------
Confidence 457899999999999 98668999999999999998678999999999984 654443211 1
Q ss_pred CCCcccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccC-c
Q 041635 169 RCPKVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMP-L 247 (345)
Q Consensus 169 r~p~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P-~ 247 (345)
..| +
T Consensus 86 ---------------------------------------------------------------------------~~~~~ 90 (472)
T 1xhb_A 86 ---------------------------------------------------------------------------KLKVP 90 (472)
T ss_dssp ---------------------------------------------------------------------------SSSSC
T ss_pred ---------------------------------------------------------------------------HCCCc
Confidence 134 5
Q ss_pred eEEEeccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc-CCC
Q 041635 248 LVYVSREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL-DPK 310 (345)
Q Consensus 248 l~yv~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~-Dp~ 310 (345)
+.++..+++.| +++|+|.|++. +.|++|+++|+|..+. |++|.+++..+. ++.
T Consensus 91 v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~~ 144 (472)
T 1xhb_A 91 VHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCECT-AGWLEPLLARIKHDRR 144 (472)
T ss_dssp EEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEEEC-TTCHHHHHHHHHHCTT
T ss_pred EEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeEeC-ccHHHHHHHHHHhCCC
Confidence 77887765544 99999999998 7899999999999998 999999999988 665
No 6
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.44 E-value=2.7e-13 Score=129.75 Aligned_cols=121 Identities=16% Similarity=0.032 Sum_probs=91.7
Q ss_pred CCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccCCC
Q 041635 92 NLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTRCP 171 (345)
Q Consensus 92 ~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r~p 171 (345)
.-|.|+|+||+|| |+ +.+.++|.+++++.||. ..+|+|+||||+|.|.+.+.+ ++...
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~~--------------~~~~~--- 103 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVA--------------AGARV--- 103 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHHH--------------TTCEE---
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHHHHHH--------------hhhhh---
Confidence 4589999999999 77 47899999999999983 489999999999988654432 22100
Q ss_pred cccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceEEE
Q 041635 172 KVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLVYV 251 (345)
Q Consensus 172 ~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~yv 251 (345)
.+++.++
T Consensus 104 -------------------------------------------------------------------------~~~~~~~ 110 (329)
T 3ckj_A 104 -------------------------------------------------------------------------VSREQAL 110 (329)
T ss_dssp -------------------------------------------------------------------------EEHHHHC
T ss_pred -------------------------------------------------------------------------ccceeee
Confidence 0011122
Q ss_pred e-ccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCC-CCChHHHHHHhchhc-CCCCCCcEEEEeCC
Q 041635 252 S-REKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMF-CNDPTSAKQAMCFHL-DPKLSPSLAFVQFP 321 (345)
Q Consensus 252 ~-R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~-~~~p~~L~~~v~~f~-Dp~~g~~va~VQtP 321 (345)
. .++ +.+|++|+|.|+.. ++|++|+++|+|.+ +. |++|.+++..+. +|+ +++|+..
T Consensus 111 ~~~~~-----n~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-p~~l~~l~~~l~~~~~----~~~v~g~ 169 (329)
T 3ckj_A 111 PEVPI-----RPGKGEALWRSLAA----SRGDIVVFVDSDLINPH-PMFVPWLVGPLLTGDG----VHLVKSF 169 (329)
T ss_dssp TTSCC-----CCSHHHHHHHHHHH----CCCSEEEECCTTEESCC-TTHHHHHHHHHHSCSS----CCEEEEE
T ss_pred ccCCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCCCcC-hHHHHHHHHHHHhCCC----ccEEEEE
Confidence 1 222 35699999999998 79999999999998 77 999999998855 777 6666664
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.44 E-value=2.1e-13 Score=140.23 Aligned_cols=117 Identities=18% Similarity=0.079 Sum_probs=95.8
Q ss_pred CCCCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhh-HHHHHHHHhhhccchhHHHHhCCcc
Q 041635 90 EQNLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALT-LLALRQACAFASSWLPFCRRFGIKT 168 (345)
Q Consensus 90 ~~~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t-~~~l~ea~~~a~~W~~~c~~~~v~~ 168 (345)
++.+|.|+|+||+|| |+...+.+||.|++++.||...++|+|+||||++.| .+.|.+. ++
T Consensus 108 ~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~----------~~------ 168 (570)
T 2d7i_A 108 LETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDY----------MA------ 168 (570)
T ss_dssp ESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHH----------HT------
T ss_pred CCCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHH----------HH------
Confidence 356899999999999 886689999999999999975669999999999987 4333221 11
Q ss_pred CCCcccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCce
Q 041635 169 RCPKVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLL 248 (345)
Q Consensus 169 r~p~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l 248 (345)
..|++
T Consensus 169 ---------------------------------------------------------------------------~~~~v 173 (570)
T 2d7i_A 169 ---------------------------------------------------------------------------LFPSV 173 (570)
T ss_dssp ---------------------------------------------------------------------------TSTTE
T ss_pred ---------------------------------------------------------------------------hCCeE
Confidence 12457
Q ss_pred EEEeccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc-CCC
Q 041635 249 VYVSREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL-DPK 310 (345)
Q Consensus 249 ~yv~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~-Dp~ 310 (345)
.++..+++. ++++|+|.|++. ++|++|+++|+|..+. |++|.+++..+. ++.
T Consensus 174 ~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~fLD~D~~~~-p~~L~~ll~~l~~~~~ 226 (570)
T 2d7i_A 174 RILRTKKRE-----GLIRTRMLGASV----ATGDVITFLDSHCEAN-VNWLPPLLDRIARNRK 226 (570)
T ss_dssp EEEECSSCC-----CHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCSHHHHHHHHHCTT
T ss_pred EEEECCCCC-----CHHHHHHHHHHh----cCCCEEEEEcCCcccc-ccHHHHHHHHHHhCCC
Confidence 788766544 499999999998 7899999999999997 999999999998 454
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.44 E-value=1.3e-13 Score=138.77 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=93.3
Q ss_pred CCCCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccC
Q 041635 90 EQNLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTR 169 (345)
Q Consensus 90 ~~~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r 169 (345)
+..+|.|+|+||+|| |+...+.++|.|++++.||...++|+|+||||++.|...+.
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~--------------------- 117 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALL--------------------- 117 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGG---------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHH---------------------
Confidence 457899999999999 88548999999999999987667999999999997642110
Q ss_pred CCcccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceE
Q 041635 170 CPKVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLV 249 (345)
Q Consensus 170 ~p~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~ 249 (345)
...|++.
T Consensus 118 -------------------------------------------------------------------------~~~~~v~ 124 (501)
T 2ffu_A 118 -------------------------------------------------------------------------GKIEKVR 124 (501)
T ss_dssp -------------------------------------------------------------------------GGBTTEE
T ss_pred -------------------------------------------------------------------------hcCCCEE
Confidence 0124577
Q ss_pred EEeccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhcC
Q 041635 250 YVSREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHLD 308 (345)
Q Consensus 250 yv~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~D 308 (345)
++..+++. ++++|+|.|++. ++|++|+++|+|..+. |++|.+++..+.+
T Consensus 125 vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~ 173 (501)
T 2ffu_A 125 VLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHCECN-EHWLEPLLERVAE 173 (501)
T ss_dssp EEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCHHHHHHHHHH
T ss_pred EEECCCCc-----CHHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHh
Confidence 88766544 499999999998 7899999999999998 9999999999883
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.44 E-value=4.6e-13 Score=137.74 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=100.1
Q ss_pred CCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccCCC
Q 041635 92 NLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTRCP 171 (345)
Q Consensus 92 ~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r~p 171 (345)
..|.|+|+||||| ++ ..+.++|.|++++.||. ++|+|+|||++|.|.+.+.+.. +
T Consensus 373 ~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~~~~----------~--------- 427 (625)
T 2z86_A 373 RVPLVSIYIPAYN---CS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQEHY----------A--------- 427 (625)
T ss_dssp SSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHHHHH----------T---------
T ss_pred cCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHHHHH----------h---------
Confidence 4689999999999 76 57899999999999986 9999999999998875554311 0
Q ss_pred cccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceEEE
Q 041635 172 KVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLVYV 251 (345)
Q Consensus 172 ~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~yv 251 (345)
..|++.++
T Consensus 428 ------------------------------------------------------------------------~~~~i~~~ 435 (625)
T 2z86_A 428 ------------------------------------------------------------------------NHPRVRFI 435 (625)
T ss_dssp ------------------------------------------------------------------------TCTTEEEE
T ss_pred ------------------------------------------------------------------------hCCcEEEE
Confidence 12446677
Q ss_pred eccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc-CCCCCCcEEEEeCCceecCC
Q 041635 252 SREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL-DPKLSPSLAFVQFPQKFHNI 327 (345)
Q Consensus 252 ~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~-Dp~~g~~va~VQtPQ~F~n~ 327 (345)
. +++ .++++|+|.|++. ++|++|+++|+|.++. |++|.+++..|. +|+ +++|.+...+.+.
T Consensus 436 ~-~~n-----~G~~~a~n~g~~~----a~g~~i~~ld~D~~~~-~~~l~~~~~~~~~~~~----~~~v~~~~~~~~~ 497 (625)
T 2z86_A 436 S-QKN-----KGIGSASNTAVRL----CRGFYIGQLDSDDFLE-PDAVELCLDEFRKDLS----LACVYTTNRNIDR 497 (625)
T ss_dssp E-ECC-----CCHHHHHHHHHHH----CCSSEEEECCTTCEEC-TTHHHHHHHHHHHCTT----CSEEEEEEEEECT
T ss_pred e-CCC-----CCHHHHHHHHHHh----cCCCEEEEECCCcccC-hhHHHHHHHHHHhCCC----eeEEEeeeEEECC
Confidence 5 333 4599999999998 7999999999999997 999999999886 777 6778776665543
No 10
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=99.31 E-value=4.1e-12 Score=125.47 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=88.7
Q ss_pred CCCeeEEEeeccCCCCCChHHHHHHHHHHHc--CCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccC
Q 041635 92 NLPAIDVFICTADPKKEPPLEVMNTVLSAMA--LDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTR 169 (345)
Q Consensus 92 ~~P~VdV~V~tynp~~Ep~~~v~~tv~s~la--ldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r 169 (345)
..|.|+|+||+|| |+ +.+..+|.++++ .+||.+ .+|+|+||||+|.|.+.+.+ ++..
T Consensus 92 ~~p~vSVVIP~yN---e~-~~l~~~l~sl~~~l~~~~~~-~EIIVVDDgStD~T~~i~~~--------------~~~~-- 150 (387)
T 3f1y_A 92 LGLTVSAVLPSRN---VA-DTVGGIIDEIHALNERAPLI-DQILVVDADSEDGTAGVAAS--------------HGAE-- 150 (387)
T ss_dssp HTCCEEEEEEESS---CT-TTHHHHHHHHHHHHHHSCCC-SEEEEEECSCSSSHHHHHHH--------------TTCE--
T ss_pred CCCeEEEEEEcCC---CH-HHHHHHHHHHHHHHhcCCCC-eEEEEEcCcCCccHHHHHHH--------------hCch--
Confidence 3589999999999 77 478899999887 367643 79999999999998654432 2210
Q ss_pred CCcccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceE
Q 041635 170 CPKVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLV 249 (345)
Q Consensus 170 ~p~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~ 249 (345)
++. ..++
T Consensus 151 -----------------------------------------------------------v~~--------------~~~~ 157 (387)
T 3f1y_A 151 -----------------------------------------------------------VYS--------------ENEL 157 (387)
T ss_dssp -----------------------------------------------------------EEE--------------GGGT
T ss_pred -----------------------------------------------------------hcc--------------ccee
Confidence 000 0011
Q ss_pred EEeccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCC-CCChHHHHHHhchhc-CCCCCCcEEEEeC
Q 041635 250 YVSREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMF-CNDPTSAKQAMCFHL-DPKLSPSLAFVQF 320 (345)
Q Consensus 250 yv~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~-~~~p~~L~~~v~~f~-Dp~~g~~va~VQt 320 (345)
++..++ ..+|++|+|.|+.. ++|++|+++|+|.. +. |++|.+++..+. +|+ +++|..
T Consensus 158 ~i~~~~-----n~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~-p~~L~~l~~~l~~~p~----~d~v~G 216 (387)
T 3f1y_A 158 MSGYGD-----AHGKGDAMWRALSV----TRGDLVLYIDADTRDFR-PQLAYGVLGPVLEVPG----VRFVKA 216 (387)
T ss_dssp TGGGCS-----CCSHHHHHHHHTTT----CCSSEEEECCTTCSSCC-THHHHTTHHHHHHSTT----CCEEEE
T ss_pred EecCCc-----cCCHHHHHHHHHHh----cCCCEEEEEcCCCCcCC-HHHHHHHHHHHHHCCC----ceEEEE
Confidence 223333 34599999999998 78999999999999 77 999999999886 666 455544
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.22 E-value=9.9e-13 Score=138.55 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred CeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhHHHHHHHHhhhccchhHHHHhCCccCCCcc
Q 041635 94 PAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTLLALRQACAFASSWLPFCRRFGIKTRCPKV 173 (345)
Q Consensus 94 P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~~~l~ea~~~a~~W~~~c~~~~v~~r~p~~ 173 (345)
|.|+|+||||| ++ +.+.++|.|++++.||. ++|+|+||||+|.|.+.+.+. +++++
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~~--~EIIVVDDgStD~t~~il~~~----------~~~~~-------- 57 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQD--FNLIIVNDGSTDQSKKLMDEA----------IKDYD-------- 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCC---CH-HHHHHHHHHHHhCCCCC--eEEEEEECCCCCcHHHHHHHH----------HHhCC--------
Confidence 78999999999 77 58899999999999996 999999999999876544331 11110
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceEEEec
Q 041635 174 YFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLVYVSR 253 (345)
Q Consensus 174 yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~yv~R 253 (345)
+++.++..
T Consensus 58 ------------------------------------------------------------------------~~i~~i~~ 65 (729)
T 3l7i_A 58 ------------------------------------------------------------------------KNIRFIDL 65 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------------CCEEEEEC
Confidence 23566665
Q ss_pred cCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhcCCC
Q 041635 254 EKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHLDPK 310 (345)
Q Consensus 254 ~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~Dp~ 310 (345)
+++ .+.++|.|.|+.. ++|++|+++|+|.++. |++|.+++..+.+++
T Consensus 66 ~~n-----~G~~~arN~gi~~----A~gdyI~flD~Dd~~~-p~~l~~l~~~l~~~d 112 (729)
T 3l7i_A 66 DEN-----SGHAHARNIALEE----VETPYFMFLDADDELA-SYAITFYLEKFNNTD 112 (729)
T ss_dssp ---------------------------------------------------------
T ss_pred CCC-----CCHHHHHHHHHHh----ccCCEEEEECCCCCCC-hhHHHHHHHHhcCCC
Confidence 543 4599999999998 7999999999999997 999999999887444
No 12
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.07 E-value=1.6e-10 Score=121.27 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=87.8
Q ss_pred CCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCce-EEEEEcCCCChhh-HHHHHHHHhhhccchhHHHHhCCccC
Q 041635 92 NLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKL-HVYLSDDAGSALT-LLALRQACAFASSWLPFCRRFGIKTR 169 (345)
Q Consensus 92 ~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl-~V~v~DDg~s~~t-~~~l~ea~~~a~~W~~~c~~~~v~~r 169 (345)
.-|.|+|+||||| ++ +.+.++|.|++++.|+.++. +|+|+|||++|.+ ...+.+.. ++
T Consensus 178 ~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~----------~~------ 237 (657)
T 4fix_A 178 GTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAA----------AR------ 237 (657)
T ss_dssp SCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHH----------HH------
T ss_pred CCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHH----------Hh------
Confidence 4589999999999 77 58899999999999865545 9999999998742 00111100 00
Q ss_pred CCcccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccceEEeecCCCchhhhcccccCceE
Q 041635 170 CPKVYFSNLNDDHCFTRSVEYEKERVNIKRKYELFKEHIRIAEEEKSSATDKINPSIVEVIIDKSDDEVRANQVEMPLLV 249 (345)
Q Consensus 170 ~p~~yf~~~~~~~~~~~~~~~~~e~~~~~~~y~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~P~l~ 249 (345)
..|++.
T Consensus 238 --------------------------------------------------------------------------~~~~I~ 243 (657)
T 4fix_A 238 --------------------------------------------------------------------------LGSRLS 243 (657)
T ss_dssp --------------------------------------------------------------------------HGGGEE
T ss_pred --------------------------------------------------------------------------cCCCEE
Confidence 013567
Q ss_pred EEeccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc-CCC
Q 041635 250 YVSREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL-DPK 310 (345)
Q Consensus 250 yv~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~-Dp~ 310 (345)
++..+ + .+.||+.|.||+.+.-.+++++|+++|.|.++. |++|.+++.++. +++
T Consensus 244 vI~~~-N-----~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~-pd~L~~ll~~l~~~~~ 298 (657)
T 4fix_A 244 IHDQP-N-----LGGSGGYSRVMYEALKNTDCQQILFMDDDIRLE-PDSILRVLAMHRFAKA 298 (657)
T ss_dssp EEECC-C-----CHHHHHHHHHHHHHHHHCCCSEEEEECSSEEEC-THHHHHHHHHHHHBSS
T ss_pred EEECC-C-----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCccC-hhHHHHHHHHHHhCCC
Confidence 77644 3 458999999999842112679999999999998 999999999987 555
No 13
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=98.77 E-value=8.5e-08 Score=95.08 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=36.1
Q ss_pred CCChhhHHHHHH----hhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc
Q 041635 261 HHFKAGALNCLL----RVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL 307 (345)
Q Consensus 261 ~~~KAGalN~~l----~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~ 307 (345)
..+|.+|+++|+ .. ++|++|+++|||..-.+|+.+.+++....
T Consensus 73 n~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 73 RPGKGDGMNTALRYFLEE----TQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 356999999999 66 78999999999996323999999888664
No 14
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=98.63 E-value=7e-08 Score=88.49 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=36.4
Q ss_pred hhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhcC
Q 041635 264 KAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHLD 308 (345)
Q Consensus 264 KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~D 308 (345)
.|+|+|.|++. ++|++++++|+|.++. |++|.+++.++.+
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~~-~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVELV-DRGYDDLVAAIEA 101 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEECS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHh
Confidence 47899999998 7899999999999997 8999999998874
No 15
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.34 E-value=5.5e-07 Score=85.33 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=35.1
Q ss_pred CCeeEEEeeccCCCCCChHHHHHHHHHHH---cCCCCCCceEEEEEcCC
Q 041635 93 LPAIDVFICTADPKKEPPLEVMNTVLSAM---ALDYPSKKLHVYLSDDA 138 (345)
Q Consensus 93 ~P~VdV~V~tynp~~Ep~~~v~~tv~s~l---aldYP~~kl~V~v~DDg 138 (345)
.|.|+|+||+|| ++ +.+..+|.+++ ...|+. ++|+|+||+
T Consensus 64 ~~~VSIIIP~yN---~~-~~L~~~L~sl~~~l~q~~~~--~EIiVVdds 106 (287)
T 2fy7_A 64 PHKVAIIIPFRN---RQ-EHLKYWLYYLHPVLQRQQLD--YGIYVINQA 106 (287)
T ss_dssp SCEEEEEEEESS---CH-HHHHHHHHHHHHHHHHTTCE--EEEEEEEEC
T ss_pred CCcEEEEEeeCC---CH-HHHHHHHHHHHHHHHHhcCC--ceEEEEEeC
Confidence 589999999999 87 58899999998 677875 999999994
No 16
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=98.20 E-value=7.1e-06 Score=80.31 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=36.2
Q ss_pred CCCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhH
Q 041635 92 NLPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTL 144 (345)
Q Consensus 92 ~~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~ 144 (345)
.+..++|+||+|| |+. .++.+++++-+-. .+|+|+|||+.|.|.
T Consensus 51 i~~klSIVVPvYN---Ee~----~lLesVl~qi~~d--~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 51 VLEQTAIVVPTRN---ERL----KLLEGVLSGIPHE--ALILVASNSSPDRFQ 94 (391)
T ss_dssp HHTTEEEEEEESS---CCH----HHHHHHHHTSCTT--SEEEEEECCCHHHHH
T ss_pred HHhceEEEEeccC---cHH----HHHHHHHhcCCCC--ceEEEEECCCCCChH
Confidence 3567999999999 884 3688888887764 999999999998773
No 17
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=98.12 E-value=1.7e-05 Score=78.55 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=31.7
Q ss_pred ChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchh
Q 041635 263 FKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFH 306 (345)
Q Consensus 263 ~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f 306 (345)
+|..||=+|+..+. ..+|++|+++|||-+ .|.++.+.+.-|
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~--iP~~v~~~~kgy 184 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNY--IPGAVNEYVKDY 184 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBS--CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCC--CHHHHHHHHHHh
Confidence 69999999998831 018999999999993 388887665444
No 18
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=98.03 E-value=2.7e-05 Score=75.81 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=40.3
Q ss_pred CCeeEEEeeccCCCCCChHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhhH
Q 041635 93 LPAIDVFICTADPKKEPPLEVMNTVLSAMALDYPSKKLHVYLSDDAGSALTL 144 (345)
Q Consensus 93 ~P~VdV~V~tynp~~Ep~~~v~~tv~s~laldYP~~kl~V~v~DDg~s~~t~ 144 (345)
++.+.|+|+||| -| + +.+++.++++++.+.++..|+|+|||+.+.|.
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~ 47 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETA 47 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHH
Confidence 356789999999 88 5 89999999999977778899999999987553
No 19
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=67.06 E-value=9.5 Score=34.07 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=41.8
Q ss_pred hhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhcC-CCC-----------------C--------CcEEE
Q 041635 264 KAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHLD-PKL-----------------S--------PSLAF 317 (345)
Q Consensus 264 KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~D-p~~-----------------g--------~~va~ 317 (345)
....+-+||.......+.+++++.|||+=.-.++.+++++..+.+ .+. | ..+--
T Consensus 83 r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~~~~~~~g~v~~~~~r~~l~~ 162 (231)
T 3q80_A 83 RTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRA 162 (231)
T ss_dssp HHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCEEEECTTSBEEECCCGGGEEE
T ss_pred hHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCEEEEcCCCcEEEecchhheEE
Confidence 456677777753200125899999999755458999998877654 220 1 24556
Q ss_pred EeCCceecC
Q 041635 318 VQFPQKFHN 326 (345)
Q Consensus 318 VQtPQ~F~n 326 (345)
+||||.|..
T Consensus 163 ~qTPq~F~~ 171 (231)
T 3q80_A 163 VQTPQGFTT 171 (231)
T ss_dssp ECSCEEEEH
T ss_pred EcCCcEEEH
Confidence 899999974
No 20
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=65.24 E-value=30 Score=31.24 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=29.8
Q ss_pred hhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc
Q 041635 264 KAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL 307 (345)
Q Consensus 264 KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~ 307 (345)
.++ +..++...+ ..+.+.++++++|+-.-.++.+++++..|.
T Consensus 83 t~~-i~~a~~~l~-~~~~d~vlv~~gD~Pli~~~~i~~li~~~~ 124 (256)
T 3tqd_A 83 TER-IAEAAVALG-FEDDEIIVCLQGDEPLIPPDAIRKLAEDLD 124 (256)
T ss_dssp HHH-HHHHHHHTT-CCTTCEEEEECTTCCCCCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhC-cCCCCEEEEEeCCcccCCHHHHHHHHHHHH
Confidence 444 666666521 125789999999994333899999998887
No 21
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=59.98 E-value=21 Score=30.39 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=31.0
Q ss_pred ChhhHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhchh
Q 041635 263 FKAGALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCFH 306 (345)
Q Consensus 263 ~KAGalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~f 306 (345)
+-++++-.|+... .+.+.+++++||+ +.. ++.+++++..+
T Consensus 72 G~~~si~~al~~~---~~~~~vlv~~~D~P~i~-~~~i~~l~~~~ 112 (197)
T 3d5n_A 72 GISTSLKLGLRFF---KDYDAVLVALGDMPFVT-KEDVNKIINTF 112 (197)
T ss_dssp CHHHHHHHHHHHT---TTSSEEEEEETTCCCSC-HHHHHHHHHTC
T ss_pred CHHHHHHHHHHhh---ccCCcEEEEeCCccccC-HHHHHHHHHHh
Confidence 3577888888762 2347999999999 555 89999988766
No 22
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=56.05 E-value=53 Score=29.07 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=29.5
Q ss_pred ChhhHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhchhcC
Q 041635 263 FKAGALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCFHLD 308 (345)
Q Consensus 263 ~KAGalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~f~D 308 (345)
+.++ +-.++...+ ..+.+.++++++|+ +.. ++.+++++..+.+
T Consensus 75 Gt~~-~~~~~~~l~-~~~~d~vlv~~gD~Pli~-~~~i~~l~~~~~~ 118 (252)
T 3oam_A 75 GTER-LAEVVAKMA-IPADHIVVNVQGDEPLIP-PAIIRQVADNLAA 118 (252)
T ss_dssp HHHH-HHHHHHHTT-CCTTSEEEECCTTCTTCC-HHHHHHHHHHHHH
T ss_pred cHHH-HHHHHHhcC-cCCCCEEEEEeCCeeecC-HHHHHHHHHHHHh
Confidence 3555 344444311 12578999999999 555 8999999988864
No 23
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=52.87 E-value=77 Score=28.39 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=29.9
Q ss_pred hHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhchhc
Q 041635 266 GALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCFHL 307 (345)
Q Consensus 266 GalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~f~ 307 (345)
+.+..++...+ ..+.++++++++|+ ... |+.+++++..+.
T Consensus 77 ~~i~~a~~~~~-~~~~d~vlv~~gD~Pli~-~~~i~~li~~~~ 117 (253)
T 4fcu_A 77 DRLSEVARIKG-WDADDIIVNVQGDEPLLP-AQLVQQVAKLLV 117 (253)
T ss_dssp HHHHHHHHHHT-CCTTCEEEECCTTCTTCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cCCCCEEEEEeCCcccCC-HHHHHHHHHHHH
Confidence 45666666532 02568999999999 555 899999998886
No 24
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=41.56 E-value=1.6e+02 Score=26.45 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhcCC
Q 041635 264 KAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHLDP 309 (345)
Q Consensus 264 KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~Dp 309 (345)
.++ +..++.... ..+.+.++++++|+-.-.++.+++++..+.+.
T Consensus 92 t~~-i~~~~~~l~-~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~ 135 (264)
T 3k8d_A 92 TER-LAEVVEKCA-FSDDTVIVNVQGDEPMIPATIIRQVADNLAQR 135 (264)
T ss_dssp HHH-HHHHHHHHT-CCTTCEEEEECTTCTTCCHHHHHHHHHHHHTS
T ss_pred HHH-HHHHHHHhc-cCCCCEEEEEcCCcccCCHHHHHHHHHHHhhc
Confidence 444 555555421 13679999999999433489999999988754
No 25
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=37.05 E-value=23 Score=31.22 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=31.2
Q ss_pred hhhHHHHHHhhccc---CCCCCEEEEecCCCCCCChHHHHHHhchhc
Q 041635 264 KAGALNCLLRVSSI---LSNSPYILVLDCDMFCNDPTSAKQAMCFHL 307 (345)
Q Consensus 264 KAGalN~~l~~s~~---~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~ 307 (345)
..+++-+|+..... ..+.++|++.|||+-.-.++.+++++..+.
T Consensus 85 ~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~ 131 (246)
T 3f1c_A 85 RNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAAL 131 (246)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHH
Confidence 57777777775320 013689999999983334899999888775
No 26
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=35.21 E-value=60 Score=27.45 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=31.2
Q ss_pred hhhHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhchh
Q 041635 264 KAGALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCFH 306 (345)
Q Consensus 264 KAGalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~f 306 (345)
.++++-.|+... .+.+.+++++||+ +.. ++.+++++..+
T Consensus 79 ~~~~i~~al~~~---~~~~~vlv~~~D~P~~~-~~~i~~l~~~~ 118 (223)
T 2xwl_A 79 RTESVALALEAA---GDAEFVLVHDAARALTP-PALIARVVAAL 118 (223)
T ss_dssp HHHHHHHHHTTC---TTCSEEEECCTTCTTCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCEEEEEcCCcccCC-HHHHHHHHHHH
Confidence 688888888762 2578999999999 455 78999888877
No 27
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=33.27 E-value=34 Score=22.15 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhh
Q 041635 25 IHVTALTSLIYYRVS 39 (345)
Q Consensus 25 ~~li~~~~YL~wR~~ 39 (345)
+.++++.-+|+||-.
T Consensus 19 if~~lg~tflywrgr 33 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEccc
Confidence 334445678999864
No 28
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=31.04 E-value=82 Score=30.18 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=31.8
Q ss_pred ChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChHHHHHHhchhc
Q 041635 263 FKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPTSAKQAMCFHL 307 (345)
Q Consensus 263 ~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~~L~~~v~~f~ 307 (345)
...+.+-+++.. .+.+.++++|||+-.-.++.+++++..+.
T Consensus 75 g~~~sv~~aL~~----l~~d~vlv~~~D~Pli~~~~i~~li~~~~ 115 (371)
T 1w55_A 75 TRAESLKKALEL----IDSEFVMVSDVARVLVSKNLFDRLIENLD 115 (371)
T ss_dssp SHHHHHHHHHTT----CCSSEEEEEETTCTTCCHHHHHHHHTTGG
T ss_pred ChHHHHHHHHHh----cCCCeEEEEeCCcccCCHHHHHHHHHHHH
Confidence 367888888876 34789999999984333899999987765
No 29
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=28.42 E-value=59 Score=27.65 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=30.8
Q ss_pred ChhhHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhch
Q 041635 263 FKAGALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCF 305 (345)
Q Consensus 263 ~KAGalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~ 305 (345)
+-++++-.|+.. .+.+.+++++||+ +.. ++.+++++..
T Consensus 78 G~~~si~~~l~~----~~~~~vlv~~~D~P~i~-~~~i~~l~~~ 116 (201)
T 1e5k_A 78 GPLAGMLSVMQQ----EAGEWFLFCPCDTPYIP-PDLAARLNHQ 116 (201)
T ss_dssp SHHHHHHHHHHH----CCSSEEEEEETTCTTCC-TTHHHHHHHT
T ss_pred CHHHHHHHHHHh----CCCCcEEEEeCCcCcCC-HHHHHHHHhh
Confidence 467888888887 4578999999999 555 7888888765
No 30
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=27.84 E-value=1.4e+02 Score=27.87 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCC
Q 041635 261 HHFKAGALNCLLRVSSILSNSPYILVLDCDMFCND 295 (345)
Q Consensus 261 ~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~ 295 (345)
.--||--||.|...+. ...+++++=|.|++|.|
T Consensus 96 ~FNRa~LlNvGf~ea~--~~~d~~ifHDVDLlP~d 128 (287)
T 3lw6_A 96 RFNRASLINVGFQFAS--DVYDYIAMHDVDLLPLN 128 (287)
T ss_dssp CCCHHHHHHHHHHHSC--TTCCEEEEECTTEEECC
T ss_pred ccchhheecccHHHHh--ccCCEEEEecccccccC
Confidence 4559999999998753 45799999999999996
No 31
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=26.82 E-value=48 Score=29.53 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=36.4
Q ss_pred eEEEeccCCCCCCCCChhhHHHHHHhhcccCCCCCEEEEecCCCCCCChH----HHHHHhchhcC
Q 041635 248 LVYVSREKRPPHPHHFKAGALNCLLRVSSILSNSPYILVLDCDMFCNDPT----SAKQAMCFHLD 308 (345)
Q Consensus 248 l~yv~R~k~~g~~~~~KAGalN~~l~~s~~~s~~~~i~~~DaD~~~~~p~----~L~~~v~~f~D 308 (345)
+.|+..+.. .+-++++-.++... +.+.++++.||++.+ ++ .+++++.++.+
T Consensus 97 i~~~~~~~~-----~Gt~~al~~a~~~l----~~~~~lv~~~D~~~~-~~~~~~~l~~l~~~~~~ 151 (281)
T 3juk_A 97 FSYVRQKQM-----KGLGHAILTGEALI----GNEPFAVILADDLCI-SHDHPSVLKQMTSLYQK 151 (281)
T ss_dssp EEEEECSSC-----CCHHHHHHHTHHHH----CSSCEEEECTTEEEE-CTTSCCHHHHHHHHHHH
T ss_pred EEEEecCCC-----CCcHHHHHHHHHHc----CCCCEEEEeCCeecc-CccchHHHHHHHHHHHH
Confidence 456544332 34789999888762 345678888999876 78 79999988763
No 32
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=24.94 E-value=1.3e+02 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=33.8
Q ss_pred CChhhHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhchhcC
Q 041635 262 HFKAGALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCFHLD 308 (345)
Q Consensus 262 ~~KAGalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~f~D 308 (345)
.+-++++-+++... .+.+.+++++||+ +.. ++.+++++..+.+
T Consensus 83 ~g~~~~i~~~~~~~---~~~~~~lv~~~D~P~i~-~~~i~~l~~~~~~ 126 (459)
T 4fce_A 83 LGTGHAMQQAAPHF---ADDEDILMLYGDVPLIS-VDTLQRLLAAKPE 126 (459)
T ss_dssp CCHHHHHHHHGGGS---CTTSEEEEEETTCTTCC-HHHHHHHHHHCCT
T ss_pred CCcHHHHHHHHHhc---CCCCcEEEEeCCcccCC-HHHHHHHHHHHhh
Confidence 34688899998762 3468999999999 455 7999999988764
No 33
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=24.62 E-value=90 Score=26.57 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=31.2
Q ss_pred CChhhHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhchhcC
Q 041635 262 HFKAGALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCFHLD 308 (345)
Q Consensus 262 ~~KAGalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~f~D 308 (345)
.+.++.++ ++.. .+.+.+++++||+ +.+ ++.+++++..+.+
T Consensus 72 ~g~~~~~~-~~~~----~~~~~vlv~~~D~P~~~-~~~i~~l~~~~~~ 113 (234)
T 2y6p_A 72 SGSDRVLY-VVRD----LDVDLIINYQGDEPFVY-EEDIKLIFRELEK 113 (234)
T ss_dssp SHHHHHHH-HHTT----CCCSEEEECCTTCCCCC-HHHHHHHHHHHHH
T ss_pred cchHHHHH-HHHh----CCCCEEEEecCCcCcCC-HHHHHHHHHHHHh
Confidence 45677664 5554 3578999999999 776 8999999987763
No 34
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=22.59 E-value=65 Score=26.54 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=30.3
Q ss_pred ChhhHHHHHHhhcccCCCCCEEEEecCCC-CCCChHHHHHHhch
Q 041635 263 FKAGALNCLLRVSSILSNSPYILVLDCDM-FCNDPTSAKQAMCF 305 (345)
Q Consensus 263 ~KAGalN~~l~~s~~~s~~~~i~~~DaD~-~~~~p~~L~~~v~~ 305 (345)
+-++++-.|+.... .+.+.+++++||+ +.+ ++.+++++..
T Consensus 80 g~~~~i~~al~~~~--~~~~~vlv~~~D~P~~~-~~~i~~l~~~ 120 (197)
T 2wee_A 80 GCAASLRVALARVH--PRATGIVLMLGDQPQVA-PATLRRIIDV 120 (197)
T ss_dssp CCHHHHHHHHTTSC--TTEEEEEEEETTCTTCC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc--ccCCeEEEEeCCcCCCC-HHHHHHHHhh
Confidence 46788888887621 2468999999999 455 8899888875
No 35
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=20.10 E-value=1e+02 Score=26.18 Aligned_cols=43 Identities=5% Similarity=0.105 Sum_probs=31.1
Q ss_pred hhhHHHHHHhhcccC-C--CCCEEEEecCCC-CCCChHHHHHHhchhc
Q 041635 264 KAGALNCLLRVSSIL-S--NSPYILVLDCDM-FCNDPTSAKQAMCFHL 307 (345)
Q Consensus 264 KAGalN~~l~~s~~~-s--~~~~i~~~DaD~-~~~~p~~L~~~v~~f~ 307 (345)
.++++-+|+...... . +.+++++++||+ +.. ++.+++++..+.
T Consensus 86 ~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~-~~~i~~l~~~~~ 132 (236)
T 2vsh_A 86 RNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFIT-LRMIQDNIQLAQ 132 (236)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCC-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCC-HHHHHHHHHHHH
Confidence 667777777652100 2 358999999999 665 889999988775
Done!