Query 041639
Match_columns 137
No_of_seqs 92 out of 94
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.3E-41 2.8E-46 254.5 7.9 114 1-123 1-116 (118)
2 PF05617 Prolamin_like: Prolam 99.8 5.2E-20 1.1E-24 123.4 3.4 64 50-114 1-70 (70)
3 PF07172 GRP: Glycine rich pro 92.2 0.12 2.6E-06 37.5 2.4 27 1-27 1-28 (95)
4 PLN00214 putative protein; Pro 71.2 2.8 6.1E-05 31.9 1.8 40 50-93 38-78 (115)
5 smart00499 AAI Plant lipid tra 34.7 16 0.00036 22.9 0.5 39 51-94 1-43 (79)
6 PF03058 Sar8_2: Sar8.2 family 32.0 32 0.00069 25.4 1.6 28 1-28 1-30 (93)
7 PF10731 Anophelin: Thrombin i 31.8 54 0.0012 22.7 2.6 24 1-27 1-25 (65)
8 cd04660 nsLTP_like nsLTP_like: 28.0 40 0.00087 22.5 1.5 18 76-93 24-41 (73)
9 cd01960 nsLTP1 nsLTP1: Non-spe 24.6 50 0.0011 22.5 1.6 33 51-88 3-36 (89)
10 cd00010 AAI_LTSS AAI_LTSS: Alp 23.1 62 0.0013 20.4 1.7 25 70-94 8-36 (63)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=254.55 Aligned_cols=114 Identities=21% Similarity=0.387 Sum_probs=105.6
Q ss_pred CchhHHHHHHHHHHHHHHHh-hhccCCccccccccCcchhhhhhcCCCchhhhhhhccCcchHHHHHHHHHhCCcc-cCc
Q 041639 1 MVLKHVFFILARTCLANIAN-ATSMNDRLNNKIKLGYDLAIRLEASGGLTECWNTLMEMKSCSNEIVIFFLDSQDD-IGL 78 (137)
Q Consensus 1 M~~k~v~~ll~v~~i~~i~s-~~~~~~~p~~~~~~~~~~~~rl~~~~~~~~CwsSl~~v~gC~~EI~~~~l~G~~~-Lgp 78 (137)
|+||||++||+|+|| ++| ||+++|+|.. +++++++++++|.+|+.|||||+++++||+.||.+++++||++ ||+
T Consensus 1 m~iknV~~ll~v~cI--vvsVna~lpqf~~~--fp~~~p~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~ 76 (118)
T PLN00213 1 MSIKNVFLLLAVLCI--IVSVNAQLPQFPAQ--LPFLFPFQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGP 76 (118)
T ss_pred CchHHHHHHHHHHHH--HheeccCCCCCCCC--CCCCCCccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccch
Confidence 999999999999999 888 8888888755 6788888999999999999999999999999999999999997 999
Q ss_pred cccHHHHhhhcCcccchhcCCCCCchhhhhHhhhccccCCCCCce
Q 041639 79 DCCRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASFAPSLGG 123 (137)
Q Consensus 79 ~CCkAi~~I~~~CWP~mFp~~pf~~~e~~~LKg~C~~~~~~sp~~ 123 (137)
+|||||++.+ +|||+| |++||||+ +||++|++++..++++
T Consensus 77 aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~ 116 (118)
T PLN00213 77 ACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPI 116 (118)
T ss_pred HHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCC
Confidence 9999999966 999995 99999999 9999999998777765
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.79 E-value=5.2e-20 Score=123.37 Aligned_cols=64 Identities=28% Similarity=0.707 Sum_probs=56.2
Q ss_pred hhhhhhccCcchHHHHHHHHHhCCc-ccCccccHHHHhhhcCcccc---hhcCCCCCch--hhhhHhhhcc
Q 041639 50 ECWNTLMEMKSCSNEIVIFFLDSQD-DIGLDCCRAIDIITRNCWPA---MLTSLGFTAE--EGNILRGYCD 114 (137)
Q Consensus 50 ~CwsSl~~v~gC~~EI~~~~l~G~~-~Lgp~CCkAi~~I~~~CWP~---mFp~~pf~~~--e~~~LKg~C~ 114 (137)
|||++++++++|.+||+.+|++|+. .||++||+||+.++++|||. ||+..|++++ + +.||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 6999999999999999999999995 49999999999999999999 5555555554 4 49999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=92.17 E-value=0.12 Score=37.52 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=16.3
Q ss_pred CchhHHHHHHH-HHHHHHHHhhhccCCc
Q 041639 1 MVLKHVFFILA-RTCLANIANATSMNDR 27 (137)
Q Consensus 1 M~~k~v~~ll~-v~~i~~i~s~~~~~~~ 27 (137)
|++|+.++|.. ++.+|+|+|.+++|++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 99999554432 2233346666777766
No 4
>PLN00214 putative protein; Provisional
Probab=71.23 E-value=2.8 Score=31.91 Aligned_cols=40 Identities=15% Similarity=0.458 Sum_probs=31.5
Q ss_pred hhhhhhccCcchHHHHHHHHH-hCCcccCccccHHHHhhhcCccc
Q 041639 50 ECWNTLMEMKSCSNEIVIFFL-DSQDDIGLDCCRAIDIITRNCWP 93 (137)
Q Consensus 50 ~CwsSl~~v~gC~~EI~~~~l-~G~~~Lgp~CCkAi~~I~~~CWP 93 (137)
.|-.-+. +-|..||+..++ ||. ...+||+-+...+.+|--
T Consensus 38 ~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~ 78 (115)
T PLN00214 38 TCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHD 78 (115)
T ss_pred HHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHH
Confidence 3543333 569999999999 666 589999999999999943
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=34.68 E-value=16 Score=22.87 Aligned_cols=39 Identities=18% Similarity=0.490 Sum_probs=24.5
Q ss_pred hhhhhccCcchHHHHHHHHHhCC---cccCccccHHHHhh-hcCcccc
Q 041639 51 CWNTLMEMKSCSNEIVIFFLDSQ---DDIGLDCCRAIDII-TRNCWPA 94 (137)
Q Consensus 51 CwsSl~~v~gC~~EI~~~~l~G~---~~Lgp~CCkAi~~I-~~~CWP~ 94 (137)
|...+.+..+|..- +++. ..-...||..++.+ ...|+=.
T Consensus 1 C~~~~~~~~~c~~~-----~~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSY-----LTGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHH-----HcCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 33444444455444 3333 33778899999999 8888654
No 6
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=32.00 E-value=32 Score=25.41 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=15.9
Q ss_pred CchhH-HHHHHHH-HHHHHHHhhhccCCcc
Q 041639 1 MVLKH-VFFILAR-TCLANIANATSMNDRL 28 (137)
Q Consensus 1 M~~k~-v~~ll~v-~~i~~i~s~~~~~~~p 28 (137)
|.+|+ .|+-+.+ +++++|.|-+.+|+..
T Consensus 1 M~~Ktnlfl~lSLailLmIISSqv~AREms 30 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMIISSQVDAREMS 30 (93)
T ss_pred CcchhhhHHHHHHHHHHHHHhhHHHHHHHh
Confidence 78887 4444444 2333366666677664
No 7
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=31.78 E-value=54 Score=22.70 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHHHHHHHhhhc-cCCc
Q 041639 1 MVLKHVFFILARTCLANIANATS-MNDR 27 (137)
Q Consensus 1 M~~k~v~~ll~v~~i~~i~s~~~-~~~~ 27 (137)
|+.|-+ +++++|+++++ .+| ++|.
T Consensus 1 MA~Kl~--vialLC~aLva-~vQ~APQY 25 (65)
T PF10731_consen 1 MASKLI--VIALLCVALVA-IVQSAPQY 25 (65)
T ss_pred Ccchhh--HHHHHHHHHHH-HHhcCccc
Confidence 777753 34455665444 344 4555
No 8
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=28.04 E-value=40 Score=22.46 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=14.6
Q ss_pred cCccccHHHHhhhcCccc
Q 041639 76 IGLDCCRAIDIITRNCWP 93 (137)
Q Consensus 76 Lgp~CCkAi~~I~~~CWP 93 (137)
-+.+||.+++..+..|.=
T Consensus 24 Ps~~CC~~vk~~~~~C~C 41 (73)
T cd04660 24 PSRECCAALRRADLPCLC 41 (73)
T ss_pred CCHHHHHHHHcCCcCCEe
Confidence 677899999988767753
No 9
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=24.61 E-value=50 Score=22.54 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=22.4
Q ss_pred hhhhhccCcchHHHHHHHHHhCCcc-cCccccHHHHhhh
Q 041639 51 CWNTLMEMKSCSNEIVIFFLDSQDD-IGLDCCRAIDIIT 88 (137)
Q Consensus 51 CwsSl~~v~gC~~EI~~~~l~G~~~-Lgp~CCkAi~~I~ 88 (137)
|=..+..+..|..- ++|... -+++||.+++.+.
T Consensus 3 C~~v~~~l~~C~~y-----~~g~~~~Ps~~CC~~v~~l~ 36 (89)
T cd01960 3 CGQVTSLLAPCLGY-----LTGGGPAPSPACCSGVKSLN 36 (89)
T ss_pred HHHHHhhHHhHHHH-----HhCCCCCCChHHhhhhHHHh
Confidence 55556666667543 444444 8899999999865
No 10
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=23.12 E-value=62 Score=20.35 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=17.2
Q ss_pred HhCCc-ccCccccHHHHhhhc---Ccccc
Q 041639 70 LDSQD-DIGLDCCRAIDIITR---NCWPA 94 (137)
Q Consensus 70 l~G~~-~Lgp~CCkAi~~I~~---~CWP~ 94 (137)
++|.. .-.++||.+++.+.+ .|.=.
T Consensus 8 ~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~ 36 (63)
T cd00010 8 LTGGATAPPSDCCSGLKSVVKSDPKCLCA 36 (63)
T ss_pred HcCCCCCCChHHHHHHHHHHhcChhhHHH
Confidence 44553 488899999999853 55433
Done!