Query 041639
Match_columns 137
No_of_seqs 92 out of 94
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 16.4 23 0.0008 23.8 -0.5 8 76-83 48-55 (74)
2 1ebo_A Ebola virus envelope pr 13.2 33 0.0011 25.3 -0.5 9 74-82 82-91 (131)
3 1bwo_A NS-LTP1, nonspecific li 8.6 1.4E+02 0.005 19.7 1.5 60 51-115 3-75 (90)
4 1n89_A Lipid transfer protein; 8.3 1.7E+02 0.006 18.3 1.7 18 75-93 19-36 (67)
5 2knp_A Mcocc-1; disulfide-rich 8.2 60 0.0021 18.6 -0.5 11 89-99 17-27 (33)
6 1afh_A Maize nonspecific lipid 7.9 1.5E+02 0.0051 19.7 1.3 60 51-115 4-77 (93)
7 1ry3_A Carnocin CP52, bacterio 7.0 1.7E+02 0.0059 19.1 1.2 25 64-94 10-35 (64)
8 1l6h_A LTP2, non-specific lipi 6.9 1.6E+02 0.0053 18.6 1.0 17 75-92 20-36 (69)
9 2alg_A Non-specific lipid tran 6.7 1.5E+02 0.0052 19.6 0.9 60 51-115 4-76 (92)
10 2ljo_A Non-specific lipid-tran 6.5 2.3E+02 0.0078 19.0 1.7 19 70-88 18-36 (93)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=16.40 E-value=23 Score=23.79 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=6.7
Q ss_pred cCccccHH
Q 041639 76 IGLDCCRA 83 (137)
Q Consensus 76 Lgp~CCkA 83 (137)
+||+||-.
T Consensus 48 lgpdc~i~ 55 (74)
T 2ebo_A 48 LGPDCAIE 55 (74)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999943
No 2
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=13.19 E-value=33 Score=25.27 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=7.2
Q ss_pred cc-cCccccH
Q 041639 74 DD-IGLDCCR 82 (137)
Q Consensus 74 ~~-Lgp~CCk 82 (137)
-+ |||+||-
T Consensus 82 C~iLGPdCcI 91 (131)
T 1ebo_A 82 CHILGPDCRI 91 (131)
T ss_dssp HHHHGGGGGC
T ss_pred ceecCCcccc
Confidence 35 9999994
No 3
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=8.62 E-value=1.4e+02 Score=19.70 Aligned_cols=60 Identities=12% Similarity=0.395 Sum_probs=35.4
Q ss_pred hhhhhccCcchHHHHHHHHHhCCcccCccccHHHHhhhc------------CcccchhcCC-CCCchhhhhHhhhccc
Q 041639 51 CWNTLMEMKSCSNEIVIFFLDSQDDIGLDCCRAIDIITR------------NCWPAMLTSL-GFTAEEGNILRGYCDA 115 (137)
Q Consensus 51 CwsSl~~v~gC~~EI~~~~l~G~~~Lgp~CCkAi~~I~~------------~CWP~mFp~~-pf~~~e~~~LKg~C~~ 115 (137)
|=+.+.++..|..-+ .|...-.++||.+++.+.. .|.-....+. +..+.-+.-|=+-|.-
T Consensus 3 C~~v~~~L~pCl~y~-----~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v 75 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV-----QGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGV 75 (90)
T ss_dssp HHHHHHHHGGGHHHH-----TTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTC
T ss_pred HHHHHHhhcccHHHH-----cCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCC
Confidence 445555566676553 3332377789999998652 4543333333 4555556667777753
No 4
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=8.30 E-value=1.7e+02 Score=18.26 Aligned_cols=18 Identities=17% Similarity=0.593 Sum_probs=14.1
Q ss_pred ccCccccHHHHhhhcCccc
Q 041639 75 DIGLDCCRAIDIITRNCWP 93 (137)
Q Consensus 75 ~Lgp~CCkAi~~I~~~CWP 93 (137)
...++||.+++.. ..|.=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 4888999999975 66744
No 5
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=8.24 E-value=60 Score=18.64 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=7.6
Q ss_pred cCcccchhcCC
Q 041639 89 RNCWPAMLTSL 99 (137)
Q Consensus 89 ~~CWP~mFp~~ 99 (137)
-+|||.+-|..
T Consensus 17 crcwptvtpgv 27 (33)
T 2knp_A 17 CRCWPTVTPGV 27 (33)
T ss_dssp CCEEECSSTTE
T ss_pred eeeccccCCCe
Confidence 37999875543
No 6
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=7.89 E-value=1.5e+02 Score=19.71 Aligned_cols=60 Identities=17% Similarity=0.437 Sum_probs=35.1
Q ss_pred hhhhhccCcchHHHHHHHHHhCCcc-cCccccHHHHhhh----------c--CcccchhcCC-CCCchhhhhHhhhccc
Q 041639 51 CWNTLMEMKSCSNEIVIFFLDSQDD-IGLDCCRAIDIIT----------R--NCWPAMLTSL-GFTAEEGNILRGYCDA 115 (137)
Q Consensus 51 CwsSl~~v~gC~~EI~~~~l~G~~~-Lgp~CCkAi~~I~----------~--~CWP~mFp~~-pf~~~e~~~LKg~C~~ 115 (137)
|=+.+.++..|..- +.|... -.++||.+++.+. . .|.-...+.. +..+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 44555556666554 344434 6678999999985 2 3442222333 4555556677777864
No 7
>1ry3_A Carnocin CP52, bacteriocin carnobacteriocin B2; amphipathic helix, antibiotic; NMR {Carnobacterium maltaromaticum} SCOP: j.106.1.1
Probab=7.04 E-value=1.7e+02 Score=19.12 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHhCCcc-cCccccHHHHhhhcCcccc
Q 041639 64 EIVIFFLDSQDD-IGLDCCRAIDIITRNCWPA 94 (137)
Q Consensus 64 EI~~~~l~G~~~-Lgp~CCkAi~~I~~~CWP~ 94 (137)
|-++.+..|+.+ .|..| =.+.||..
T Consensus 10 ~eL~~i~GG~yyGnGvyC------nk~kC~vd 35 (64)
T 1ry3_A 10 KEMKQLHGGVNYGNGVSC------SKTKCSVN 35 (64)
T ss_dssp HHHHTTSCCCSCTTSCCC------SSSCCCCC
T ss_pred HHHhhhcCCeeeCCcceE------CCceeeec
Confidence 446777889888 99999 46789985
No 8
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=6.91 E-value=1.6e+02 Score=18.62 Aligned_cols=17 Identities=18% Similarity=0.690 Sum_probs=13.4
Q ss_pred ccCccccHHHHhhhcCcc
Q 041639 75 DIGLDCCRAIDIITRNCW 92 (137)
Q Consensus 75 ~Lgp~CCkAi~~I~~~CW 92 (137)
...++||.+++.. ..|.
T Consensus 20 ~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 20 RPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp STTHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHhhCCC-CCCC
Confidence 4888999999975 5664
No 9
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=6.68 E-value=1.5e+02 Score=19.63 Aligned_cols=60 Identities=20% Similarity=0.490 Sum_probs=37.0
Q ss_pred hhhhhccCcchHHHHHHHHHhCCcccCccccHHHHhhh-------c-----CcccchhcCC-CCCchhhhhHhhhccc
Q 041639 51 CWNTLMEMKSCSNEIVIFFLDSQDDIGLDCCRAIDIIT-------R-----NCWPAMLTSL-GFTAEEGNILRGYCDA 115 (137)
Q Consensus 51 CwsSl~~v~gC~~EI~~~~l~G~~~Lgp~CCkAi~~I~-------~-----~CWP~mFp~~-pf~~~e~~~LKg~C~~ 115 (137)
|=+.+.++..|..-+. .|. ...++||.+++.+. | .|.=...++. ++.+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y~~----~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv 76 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVR----GGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGV 76 (92)
T ss_dssp HHHHHHHHGGGHHHHH----HCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTC
T ss_pred hHHHHHhccCcHHHHc----CCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCC
Confidence 5555566667766542 232 47789999999865 3 3443333334 5666666677788864
No 10
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=6.47 E-value=2.3e+02 Score=19.03 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=13.9
Q ss_pred HhCCcccCccccHHHHhhh
Q 041639 70 LDSQDDIGLDCCRAIDIIT 88 (137)
Q Consensus 70 l~G~~~Lgp~CCkAi~~I~ 88 (137)
+.|.....++||..++.+.
T Consensus 18 v~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 18 LTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HTTSSCCCHHHHHHHHHHH
T ss_pred HcCCCCCCCchhhHHHHHH
Confidence 4454448889999988874
Done!