Query 041639
Match_columns 137
No_of_seqs 92 out of 94
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 15:38:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041639.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041639hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 10.0 54 0.0039 20.4 1.4 60 51-115 4-77 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 9.1 63 0.0046 20.0 1.5 60 51-115 3-75 (91)
3 d1hssa_ a.52.1.2 (A:) 0.19 alp 8.6 61 0.0044 22.0 1.3 35 58-93 13-50 (120)
4 d1k8rb_ d.15.1.5 (B:) Protein 8.3 72 0.0052 20.8 1.5 17 55-71 14-30 (95)
5 d2bwba1 a.5.2.1 (A:328-371) DS 6.1 1.2E+02 0.0091 16.8 1.7 29 44-72 16-44 (44)
6 d1gv2a2 a.4.1.3 (A:144-190) c- 4.7 1.2E+02 0.0086 16.4 0.9 16 99-114 2-17 (47)
7 d2cqea2 g.66.1.1 (A:429-457) Z 4.5 88 0.0064 16.3 0.2 8 109-116 13-20 (29)
8 d1dsqa_ g.40.1.1 (A:) Nucleic 4.4 1.1E+02 0.0077 15.5 0.5 11 71-81 8-19 (26)
9 d1g60a_ c.66.1.11 (A:) Methylt 4.2 1.4E+02 0.01 19.7 1.2 26 78-103 10-35 (256)
10 d1gvda_ a.4.1.3 (A:) c-Myb, DN 4.1 1.3E+02 0.0097 16.5 0.8 17 99-115 4-20 (52)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=9.95 E-value=54 Score=20.39 Aligned_cols=60 Identities=17% Similarity=0.455 Sum_probs=35.4
Q ss_pred hhhhhccCcchHHHHHHHHHhCCcc-cCccccHHHHhhhc------------Ccccchhc-CCCCCchhhhhHhhhccc
Q 041639 51 CWNTLMEMKSCSNEIVIFFLDSQDD-IGLDCCRAIDIITR------------NCWPAMLT-SLGFTAEEGNILRGYCDA 115 (137)
Q Consensus 51 CwsSl~~v~gC~~EI~~~~l~G~~~-Lgp~CCkAi~~I~~------------~CWP~mFp-~~pf~~~e~~~LKg~C~~ 115 (137)
|=+.+.++-.|.. |++|... -+++||.+++.+.+ +|.-.... ..|+.+.-..-|=+-|.-
T Consensus 4 C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 77 (93)
T d1fk5a_ 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCC
Confidence 4444555555543 3566554 78899999998753 23322222 235666666667778853
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=9.10 E-value=63 Score=20.01 Aligned_cols=60 Identities=15% Similarity=0.446 Sum_probs=35.0
Q ss_pred hhhhhccCcchHHHHHHHHHhCCcccCccccHHHHhhhc------------CcccchhcC-CCCCchhhhhHhhhccc
Q 041639 51 CWNTLMEMKSCSNEIVIFFLDSQDDIGLDCCRAIDIITR------------NCWPAMLTS-LGFTAEEGNILRGYCDA 115 (137)
Q Consensus 51 CwsSl~~v~gC~~EI~~~~l~G~~~Lgp~CCkAi~~I~~------------~CWP~mFp~-~pf~~~e~~~LKg~C~~ 115 (137)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-..-.. .+....-..-|=+-|.-
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v 75 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNV 75 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCC
Confidence 4455555555644 345655589999999988753 233322222 24555556677777854
No 3
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=8.56 E-value=61 Score=21.96 Aligned_cols=35 Identities=17% Similarity=0.493 Sum_probs=23.4
Q ss_pred CcchHHHHHHHHHhCCc--c-cCccccHHHHhhhcCccc
Q 041639 58 MKSCSNEIVIFFLDSQD--D-IGLDCCRAIDIITRNCWP 93 (137)
Q Consensus 58 v~gC~~EI~~~~l~G~~--~-Lgp~CCkAi~~I~~~CWP 93 (137)
+++|-..+.+- -.|.. + +..+||+-+..|.+.|+=
T Consensus 13 L~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 13 LPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred cHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 45677764333 33432 2 668899999999999963
No 4
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=8.29 E-value=72 Score=20.76 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=13.2
Q ss_pred hccCcchHHHHHHHHHh
Q 041639 55 LMEMKSCSNEIVIFFLD 71 (137)
Q Consensus 55 l~~v~gC~~EI~~~~l~ 71 (137)
..|+.||.+||+.-.+.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 57899999997666554
No 5
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.13 E-value=1.2e+02 Score=16.79 Aligned_cols=29 Identities=7% Similarity=-0.072 Sum_probs=24.8
Q ss_pred cCCCchhhhhhhccCcchHHHHHHHHHhC
Q 041639 44 ASGGLTECWNTLMEMKSCSNEIVIFFLDS 72 (137)
Q Consensus 44 ~~~~~~~CwsSl~~v~gC~~EI~~~~l~G 72 (137)
|..|-..|..+|..-.|-+..-+..+++|
T Consensus 16 GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~g 44 (44)
T d2bwba1 16 GFFDFDRNVAALRRSGGSVQGALDSLLNG 44 (44)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHhCc
Confidence 56677889999999999999888888877
No 6
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.66 E-value=1.2e+02 Score=16.45 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.2
Q ss_pred CCCCchhhhhHhhhcc
Q 041639 99 LGFTAEEGNILRGYCD 114 (137)
Q Consensus 99 ~pf~~~e~~~LKg~C~ 114 (137)
.||+++|-++|...-.
T Consensus 2 ~~WT~eED~~L~~~v~ 17 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHK 17 (47)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4889999888876543
No 7
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.53 E-value=88 Score=16.32 Aligned_cols=8 Identities=25% Similarity=1.082 Sum_probs=5.9
Q ss_pred Hhhhcccc
Q 041639 109 LRGYCDAS 116 (137)
Q Consensus 109 LKg~C~~~ 116 (137)
+.|||++.
T Consensus 13 vqGyCtrg 20 (29)
T d2cqea2 13 ITGFCARA 20 (29)
T ss_dssp TTTCCSCS
T ss_pred eeeeecCC
Confidence 56888875
No 8
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=4.45 E-value=1.1e+02 Score=15.45 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=6.9
Q ss_pred hCCcc-cCcccc
Q 041639 71 DSQDD-IGLDCC 81 (137)
Q Consensus 71 ~G~~~-Lgp~CC 81 (137)
-|+++ |.++|=
T Consensus 8 cgktghikkdck 19 (26)
T d1dsqa_ 8 CGKTGHIKRDCK 19 (26)
T ss_dssp TCCBSSCTTTTT
T ss_pred cCCcccchhhhh
Confidence 46665 777763
No 9
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=4.15 E-value=1.4e+02 Score=19.65 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=22.9
Q ss_pred ccccHHHHhhhcCcccchhcCCCCCc
Q 041639 78 LDCCRAIDIITRNCWPAMLTSLGFTA 103 (137)
Q Consensus 78 p~CCkAi~~I~~~CWP~mFp~~pf~~ 103 (137)
-+|.+.+..+.+++.-.++.+-||..
T Consensus 10 gDcle~l~~lpd~sVdliitdPPY~~ 35 (256)
T d1g60a_ 10 MNCFDFLDQVENKSVQLAVIDPPYNL 35 (256)
T ss_dssp CCHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred ccHHHHHhhCcCCCcCEEEECCCCCC
Confidence 36999999999999999999999964
No 10
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.14 E-value=1.3e+02 Score=16.48 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=13.4
Q ss_pred CCCCchhhhhHhhhccc
Q 041639 99 LGFTAEEGNILRGYCDA 115 (137)
Q Consensus 99 ~pf~~~e~~~LKg~C~~ 115 (137)
.|++++|-+.|+..-.+
T Consensus 4 g~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 4 GPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999876543
Done!