Query 041640
Match_columns 140
No_of_seqs 112 out of 359
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 1.1E-38 2.3E-43 241.6 12.1 123 10-140 1-134 (154)
2 PF04535 DUF588: Domain of unk 100.0 4.9E-36 1.1E-40 224.7 12.4 130 3-140 1-141 (149)
3 PF01284 MARVEL: Membrane-asso 96.6 0.019 4.1E-07 41.1 8.1 78 6-89 3-87 (144)
4 PF14147 Spore_YhaL: Sporulati 24.5 98 0.0021 19.5 2.7 23 49-71 2-24 (52)
5 PF07584 BatA: Aerotolerance r 23.1 99 0.0022 20.1 2.7 22 4-25 54-75 (77)
6 PF12304 BCLP: Beta-casein lik 19.6 4.6E+02 0.0099 20.7 7.1 43 77-119 73-119 (188)
7 PHA03093 EEV glycoprotein; Pro 19.4 1.7E+02 0.0037 23.1 3.7 17 3-19 30-46 (185)
8 KOG4016 Synaptic vesicle prote 17.0 5.7E+02 0.012 20.8 6.4 67 5-71 21-88 (233)
9 COG5515 Uncharacterized conser 16.3 53 0.0012 21.6 0.2 11 129-139 15-25 (70)
10 KOG2662 Magnesium transporters 14.9 6E+02 0.013 22.5 6.4 55 8-71 348-404 (414)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=1.1e-38 Score=241.59 Aligned_cols=123 Identities=37% Similarity=0.503 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccceeeeee--eeeeEEeecchhHHHHHHHHHHHHHHHHHHHHh------CCCCc-chhh
Q 041640 10 FSLRVIAILTTFSATIVMITSHERVRLNE--VSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL------PSKSL-LWGL 80 (140)
Q Consensus 10 l~LR~~~~~~~~aa~~vM~t~~qt~~~~~--~~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~------~~~~~-~~~~ 80 (140)
++||+++++++++|+++|+||+||.+++. +++++||+|+|+|+|||++|+|+++|+++|+++ +++.. ..++
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 47999999999999999999999999988 999999999999999999999999999999998 33322 2349
Q ss_pred hhhhHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccchhHHhHhhhhhcccC
Q 041640 81 IVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA 140 (140)
Q Consensus 81 ~f~~D~v~~--l~sa~aAA~~v~~l~~~G~~~~~~~~~~~~~W~~vC~~~~~FC~~~~~sl~ 140 (140)
+|++||+++ ++||++||++++|++|+||+ |.+|+|+|++|++||+|+++|++
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~--------~~~W~~iC~~~~~FC~~~~~sl~ 134 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNK--------EAGWLKICGVFGKFCDRIAGSLA 134 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHcccc--------ccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999 99999999999999999999863
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=4.9e-36 Score=224.67 Aligned_cols=130 Identities=35% Similarity=0.507 Sum_probs=120.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccceeeeeeeeeeEEeecchhHHHHHHHHHHHHHHHHHHHHh------CCC--
Q 041640 3 TIERICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL------PSK-- 74 (140)
Q Consensus 3 k~~~~~~l~LR~~~~~~~~aa~~vM~t~~qt~~~~~~~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~------~~~-- 74 (140)
|..+..+++||+++++++++|+++|++|+||.++..++.++||+|+++|+|+|++|+|+++|+++|+++ +++
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~ 80 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLR 80 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 567899999999999999999999999999999999999999999999999999999999999999999 222
Q ss_pred C-cchhhhhhhHHHHH--HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccchhHHhHhhhhhcccC
Q 041640 75 S-LLWGLIVALDMVLD--VTSSISAALAIGQVEKNGNCFHPGCYNQPAGNIPRTEQLLSACLSFSTTLA 140 (140)
Q Consensus 75 ~-~~~~~~f~~D~v~~--l~sa~aAA~~v~~l~~~G~~~~~~~~~~~~~W~~vC~~~~~FC~~~~~sl~ 140 (140)
. ...+++|++||+++ ++||++||+++++++++||+ |.+|+++|+.+++||+|+++|++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~--------~~~W~~vC~~~~~FC~~~~~sv~ 141 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNS--------HVQWSKVCSQFGKFCNRAAASVA 141 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cccchhhccchhhHHHHHHHHHH
Confidence 1 22349999999999 99999999999999999999 99999999999999999999863
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=96.58 E-value=0.019 Score=41.12 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccceeeeeeeeeeEEeecchhHHHHHHHHHHHHHHHHHHHHh---C---CCCcch-
Q 041640 6 RICTFSLRVIAILTTFSATIVMITSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL---P---SKSLLW- 78 (140)
Q Consensus 6 ~~~~l~LR~~~~~~~~aa~~vM~t~~qt~~~~~~~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~---~---~~~~~~- 78 (140)
+....+||+++++++++...+++....+.. .......+...|.+.+.++...+++..+.. + .....|
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 76 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIPWP 76 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 456789999999999999999998774211 123566777888999888888888777766 1 122222
Q ss_pred hhhhhhHHHHH
Q 041640 79 GLIVALDMVLD 89 (140)
Q Consensus 79 ~~~f~~D~v~~ 89 (140)
...+..|.+++
T Consensus 77 ~~~~~~~~v~~ 87 (144)
T PF01284_consen 77 LVEFIFDAVFA 87 (144)
T ss_pred hhHHHHHHHHH
Confidence 37899999999
No 4
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=24.51 E-value=98 Score=19.50 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 041640 49 PTFKFFVIANAIVCIYGLLVLCL 71 (140)
Q Consensus 49 ~af~ylv~an~i~~~Ysll~l~~ 71 (140)
|=.+||+++-.+.++|-++-...
T Consensus 2 PwWvY~vi~gI~~S~ym~v~t~~ 24 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVKTAK 24 (52)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999886654
No 5
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=23.09 E-value=99 Score=20.08 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 041640 4 IERICTFSLRVIAILTTFSATI 25 (140)
Q Consensus 4 ~~~~~~l~LR~~~~~~~~aa~~ 25 (140)
..+...++||++++++.+.+++
T Consensus 54 ~~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 54 LRRHLLLLLRLLALALLILALA 75 (77)
T ss_pred HhhhHHHHHHHHHHHHHHHHHc
Confidence 4567788999999988887753
No 6
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=19.58 E-value=4.6e+02 Score=20.74 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=25.1
Q ss_pred chhhhhhhHHHHHHHHHHHH-HH--HHH-HHHhcCCCCCCCCCCCCC
Q 041640 77 LWGLIVALDMVLDVTSSISA-AL--AIG-QVEKNGNCFHPGCYNQPA 119 (140)
Q Consensus 77 ~~~~~f~~D~v~~l~sa~aA-A~--~v~-~l~~~G~~~~~~~~~~~~ 119 (140)
..|.++..-..-+++|++++ +. ++. -++.+|..+..||...+.
T Consensus 73 L~W~Ll~~S~ln~LlSaAc~vGL~~ai~~Tv~~~Gr~Ll~~C~f~~~ 119 (188)
T PF12304_consen 73 LHWTLLVVSLLNALLSAACAVGLLLAISLTVANQGRNLLAGCNFTNL 119 (188)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHhhcCCCCCh
Confidence 33466666665554444433 32 232 345889998888876654
No 7
>PHA03093 EEV glycoprotein; Provisional
Probab=19.43 E-value=1.7e+02 Score=23.06 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=14.0
Q ss_pred chhhHHHHHHHHHHHHH
Q 041640 3 TIERICTFSLRVIAILT 19 (140)
Q Consensus 3 k~~~~~~l~LR~~~~~~ 19 (140)
|+.|.+.+.+|+..+..
T Consensus 30 kk~r~i~i~~RisiiiS 46 (185)
T PHA03093 30 KKVKCIGICIRISIIIS 46 (185)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67889999999987653
No 8
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=17.03 E-value=5.7e+02 Score=20.79 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccceeeeeee-eeeEEeecchhHHHHHHHHHHHHHHHHHHHHh
Q 041640 5 ERICTFSLRVIAILTTFSATIVMITSHERVRLNEV-SYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL 71 (140)
Q Consensus 5 ~~~~~l~LR~~~~~~~~aa~~vM~t~~qt~~~~~~-~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~ 71 (140)
.|.-..++|+...+++++-.--+.+.-=.+.--.. +.=+==+|..+.+|=+++-..+..=++.-+.+
T Consensus 21 ~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvl 88 (233)
T KOG4016|consen 21 LRKPQTILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVL 88 (233)
T ss_pred hcCchhHHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999887644333332111111111 12222467889999888887777766666666
No 9
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=16.33 E-value=53 Score=21.60 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=8.8
Q ss_pred HhHhhhhhccc
Q 041640 129 LSACLSFSTTL 139 (140)
Q Consensus 129 ~~FC~~~~~sl 139 (140)
.+||+|+++++
T Consensus 15 ssFChrvta~L 25 (70)
T COG5515 15 SSFCHRVTAAL 25 (70)
T ss_pred HHHHHHHHHHH
Confidence 38999998775
No 10
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=14.94 E-value=6e+02 Score=22.52 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hccceeeeeeeeeeEEeecchhHHHHHHHHHHHHHHHHHHHHh
Q 041640 8 CTFSLRVIAILTTFSATIVMI--TSHERVRLNEVSYEAKYSDMPTFKFFVIANAIVCIYGLLVLCL 71 (140)
Q Consensus 8 ~~l~LR~~~~~~~~aa~~vM~--t~~qt~~~~~~~~~a~~~d~~af~ylv~an~i~~~Ysll~l~~ 71 (140)
.++.|=..++.+++.+++.-. .|=+..- +++-.+|.|++...++.|++-+.-+..
T Consensus 348 leL~Lt~gT~~~s~~~~va~ifGMNl~~~l---------~~~~~~F~~vv~~~~~~~~~lf~~i~~ 404 (414)
T KOG2662|consen 348 LELLLTIGTFCLSVFSVVAGIFGMNLPSSL---------EEDHYAFKWVVGITFTLCIVLFVVILG 404 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchh---------ccCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 456666677777776666433 3333221 566699999999999999887765443
Done!