Query 041640
Match_columns 140
No_of_seqs 112 out of 359
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 8.3 3.3E+02 0.011 16.3 3.0 27 45-71 26-52 (59)
2 2lg4_A Aurelin; antimicrobial 9.9 94 0.0032 17.7 0.0 12 124-135 11-22 (40)
3 1jlp_A PSI-conotoxin PIIIF; mu 6.6 1.5E+02 0.0051 15.0 0.6 7 111-117 13-19 (26)
4 2eqf_A Tumor necrosis factor, 6.5 2E+02 0.0069 16.6 1.2 20 112-134 15-34 (46)
5 1pgl_2 Bean POD mottle virus l 6.4 42 0.0014 27.9 -2.5 19 114-132 108-126 (370)
6 1ny7_2 Cowpea mosaic virus, la 6.3 42 0.0014 27.8 -2.5 19 114-132 108-126 (369)
7 2kse_A Sensor protein QSEC; me 6.1 1.1E+02 0.0037 20.4 -0.2 17 1-17 1-17 (186)
8 1jb0_X Photosystem I subunit P 5.9 3.5E+02 0.012 14.7 1.9 15 52-66 17-31 (35)
9 2y69_J Cytochrome C oxidase po 5.1 5.8E+02 0.02 16.3 3.0 27 45-71 47-73 (80)
10 2nwl_A GLTPH, glutamate sympor 5.0 1.3E+03 0.044 18.8 7.0 24 5-28 195-218 (422)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=8.30 E-value=3.3e+02 Score=16.35 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.0
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHh
Q 041640 45 YSDMPTFKFFVIANAIVCIYGLLVLCL 71 (140)
Q Consensus 45 ~~d~~af~ylv~an~i~~~Ysll~l~~ 71 (140)
=+|.--|.+......++.+|++-.+..
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~l~~ 52 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYCLGW 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788888888888888888765
No 2
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=9.91 E-value=94 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=10.1
Q ss_pred cchhHHhHhhhh
Q 041640 124 RTEQLLSACLSF 135 (140)
Q Consensus 124 vC~~~~~FC~~~ 135 (140)
+|.+|..||+..
T Consensus 11 ~C~~f~e~C~d~ 22 (40)
T 2lg4_A 11 ICESFKSFCKDS 22 (40)
Confidence 499999999865
No 3
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=6.60 E-value=1.5e+02 Score=14.95 Aligned_cols=7 Identities=71% Similarity=1.758 Sum_probs=4.8
Q ss_pred CCCCCCC
Q 041640 111 HPGCYNQ 117 (140)
Q Consensus 111 ~~~~~~~ 117 (140)
.||||+.
T Consensus 13 fpgcyna 19 (26)
T 1jlp_A 13 FPGCYNA 19 (26)
T ss_dssp CTTTTTS
T ss_pred CCchhhh
Confidence 4788854
No 4
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=6.54 E-value=2e+02 Score=16.55 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=9.4
Q ss_pred CCCCCCCCCCcccchhHHhHhhh
Q 041640 112 PGCYNQPAGNIPRTEQLLSACLS 134 (140)
Q Consensus 112 ~~~~~~~~~W~~vC~~~~~FC~~ 134 (140)
|||+ |.+ +.-|+-|-.-|.|
T Consensus 15 pgCd--hyg-N~kc~GyCNeC~~ 34 (46)
T 2eqf_A 15 PACD--HFG-NAKCNGYCNECFQ 34 (46)
T ss_dssp TTCC--SCC-BGGGTBSCHHHHH
T ss_pred cccc--ccc-chhhhhhhHHHHh
Confidence 4555 333 3335555455554
No 5
>1pgl_2 Bean POD mottle virus large (L) subunit; comovirus, viral coat protein, bean POD mottle virus (BPMV), icosahedral virus, virus/RNA complex; 2.80A {Bean-pod mottle virus} SCOP: b.121.4.2 b.121.4.2 PDB: 1bmv_2 1pgw_2
Probab=6.44 E-value=42 Score=27.89 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=14.0
Q ss_pred CCCCCCCCcccchhHHhHh
Q 041640 114 CYNQPAGNIPRTEQLLSAC 132 (140)
Q Consensus 114 ~~~~~~~W~~vC~~~~~FC 132 (140)
|.++|..|+|.|...-.|+
T Consensus 108 ~s~~~~~WNPAc~~~~~f~ 126 (370)
T 1pgl_2 108 CSQDCELWNPACTKAMTMS 126 (370)
T ss_dssp SSSEEEEECTTTCSEEEEE
T ss_pred cchhheeeCcccCcceEEE
Confidence 4455999999998765554
No 6
>1ny7_2 Cowpea mosaic virus, large (L) subunit; comovirus, viral coat protein, cowpea mosaic virus (CPMV), icosahedral virus; 3.00A {Cowpea mosaic virus} SCOP: b.121.4.2 b.121.4.2 PDB: 2bfu_L
Probab=6.28 E-value=42 Score=27.85 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=14.1
Q ss_pred CCCCCCCCcccchhHHhHh
Q 041640 114 CYNQPAGNIPRTEQLLSAC 132 (140)
Q Consensus 114 ~~~~~~~W~~vC~~~~~FC 132 (140)
|.++|..|+|.|...-.|+
T Consensus 108 ~s~~~~~WNPAc~~~~~f~ 126 (369)
T 1ny7_2 108 CSQDSMTWNPGCKKNFSFT 126 (369)
T ss_dssp TTSEEEEECTTTCSEEEEE
T ss_pred cchhheeECcccCcceEEE
Confidence 4456999999998765554
No 7
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=6.07 E-value=1.1e+02 Score=20.44 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.8
Q ss_pred CcchhhHHHHHHHHHHH
Q 041640 1 MVTIERICTFSLRVIAI 17 (140)
Q Consensus 1 ~~k~~~~~~l~LR~~~~ 17 (140)
|+|-.+..++-.|+...
T Consensus 1 ~~~m~~~~SLr~RL~l~ 17 (186)
T 2kse_A 1 MGKFTQRLSLRVRLTLI 17 (186)
T ss_dssp CCSTTTCSSCCCCSHHH
T ss_pred CCCCCCcccHHHHHHHH
Confidence 55555545555555443
No 8
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.90 E-value=3.5e+02 Score=14.74 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 041640 52 KFFVIANAIVCIYGL 66 (140)
Q Consensus 52 ~ylv~an~i~~~Ysl 66 (140)
..|+..|-++++|=+
T Consensus 17 lllLaINflVAayYF 31 (35)
T 1jb0_X 17 VLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 368889999998854
No 9
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=5.11 E-value=5.8e+02 Score=16.29 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.6
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHh
Q 041640 45 YSDMPTFKFFVIANAIVCIYGLLVLCL 71 (140)
Q Consensus 45 ~~d~~af~ylv~an~i~~~Ysll~l~~ 71 (140)
=+|.--|.+......++.+|++-.+..
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~l~~ 73 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYCLGW 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888888887765
No 10
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=4.99 E-value=1.3e+03 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.002 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 041640 5 ERICTFSLRVIAILTTFSATIVMI 28 (140)
Q Consensus 5 ~~~~~l~LR~~~~~~~~aa~~vM~ 28 (140)
+|.++.++|+..++.-..-+-.++
T Consensus 195 ~kiv~~im~laPigvf~lia~~~~ 218 (422)
T 2nwl_A 195 YKIVNGVMQYAPIGVFALIAYVMA 218 (422)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667666654443333333
Done!