Query 041640
Match_columns 140
No_of_seqs 112 out of 359
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 15:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041640.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041640hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rrza_ a.7.10.1 (A:) Glycogen 8.9 48 0.0035 19.2 0.7 14 124-137 45-58 (66)
2 d1bdsa_ g.9.1.1 (A:) BDs-I def 6.5 41 0.003 17.6 -0.4 8 118-125 32-39 (43)
3 d1pgl21 b.121.4.2 (2:1-182) Co 5.3 26 0.0019 24.6 -2.3 16 113-128 107-122 (182)
4 d1jb0x_ f.23.20.1 (X:) Subunit 4.2 2.5E+02 0.018 13.2 2.2 14 53-66 12-25 (29)
5 d2fkla1 d.230.3.1 (A:126-189) 3.9 71 0.0052 18.5 -0.6 19 112-130 6-24 (64)
6 d2vsla1 g.52.1.1 (A:250-345) B 3.4 83 0.0061 19.2 -0.7 20 118-137 71-95 (96)
7 d1iz5a1 d.131.1.2 (A:2-120) Pr 3.3 2.9E+02 0.021 16.5 2.1 17 40-56 1-17 (119)
8 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 3.3 1.3E+02 0.0094 19.7 0.2 14 118-135 131-144 (146)
9 d2bbga_ g.6.1.1 (A:) Amb V all 3.2 73 0.0053 16.3 -0.9 7 126-132 20-26 (40)
10 d2fkia1 d.198.3.1 (A:1-118) Hy 3.2 2E+02 0.015 17.4 1.2 16 110-125 67-82 (118)
No 1
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=8.87 E-value=48 Score=19.17 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=11.7
Q ss_pred cchhHHhHhhhhhc
Q 041640 124 RTEQLLSACLSFST 137 (140)
Q Consensus 124 vC~~~~~FC~~~~~ 137 (140)
.|..|..||.|+.-
T Consensus 45 Fc~Ry~~Yc~q~~q 58 (66)
T d1rrza_ 45 FCARYAWYCQQMMQ 58 (66)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 69999999998753
No 2
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=6.51 E-value=41 Score=17.59 Aligned_cols=8 Identities=0% Similarity=-0.678 Sum_probs=5.5
Q ss_pred CCCCcccc
Q 041640 118 PAGNIPRT 125 (140)
Q Consensus 118 ~~~W~~vC 125 (140)
-..|+.+|
T Consensus 32 cykwpnic 39 (43)
T d1bdsa_ 32 CYKWPNIC 39 (43)
T ss_dssp EEETTEEE
T ss_pred cccCCccc
Confidence 34677777
No 3
>d1pgl21 b.121.4.2 (2:1-182) Comovirus coat proteins (VP37 and VP23) {BPMV (Bean pod mottle virus) [TaxId: 12260]}
Probab=5.29 E-value=26 Score=24.64 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=12.2
Q ss_pred CCCCCCCCCcccchhH
Q 041640 113 GCYNQPAGNIPRTEQL 128 (140)
Q Consensus 113 ~~~~~~~~W~~vC~~~ 128 (140)
.|.+++..|+|.|...
T Consensus 107 ~~s~~~~~WNPAce~~ 122 (182)
T d1pgl21 107 ICSQDCELWNPACTKA 122 (182)
T ss_dssp HSSSEEEEECTTTCSE
T ss_pred hcccceeeECccccce
Confidence 3556699999999754
No 4
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.19 E-value=2.5e+02 Score=13.21 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 041640 53 FFVIANAIVCIYGL 66 (140)
Q Consensus 53 ylv~an~i~~~Ysl 66 (140)
-++..|-++++|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677888888755
No 5
>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper binding domain (domain 2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.88 E-value=71 Score=18.50 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=14.6
Q ss_pred CCCCCCCCCCcccchhHHh
Q 041640 112 PGCYNQPAGNIPRTEQLLS 130 (140)
Q Consensus 112 ~~~~~~~~~W~~vC~~~~~ 130 (140)
.||...|..-+.+|..+.+
T Consensus 6 ~~C~F~H~~~~~~C~~~~~ 24 (64)
T d2fkla1 6 DKCKFLHQERMDVCETHLH 24 (64)
T ss_dssp TTCEEEEEECTTCCEEHHH
T ss_pred CCceeeccCchhhccChHH
Confidence 4688888888888987754
No 6
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.41 E-value=83 Score=19.18 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=12.4
Q ss_pred CCCCcccchhH-----HhHhhhhhc
Q 041640 118 PAGNIPRTEQL-----LSACLSFST 137 (140)
Q Consensus 118 ~~~W~~vC~~~-----~~FC~~~~~ 137 (140)
|..|.+-|..+ ..||+++-.
T Consensus 71 H~~~~p~C~fv~~~kg~~~v~~v~~ 95 (96)
T d2vsla1 71 HAKWYPGCKYLLEQKGQEYINNIHL 95 (96)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHCcCCeehHhccChhhhhcccc
Confidence 45666777655 466766543
No 7
>d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=3.32 E-value=2.9e+02 Score=16.49 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=11.8
Q ss_pred eeeEEeecchhHHHHHH
Q 041640 40 SYEAKYSDMPTFKFFVI 56 (140)
Q Consensus 40 ~~~a~~~d~~af~ylv~ 56 (140)
|++++|.+...|++++-
T Consensus 1 ~f~~~~~~a~~fk~i~~ 17 (119)
T d1iz5a1 1 PFEIVFEGAKEFAQLID 17 (119)
T ss_dssp CEEEEEECHHHHHHHHH
T ss_pred CcEEEeCCHHHHHHHHH
Confidence 46777777777776653
No 8
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=3.28 E-value=1.3e+02 Score=19.68 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=9.3
Q ss_pred CCCCcccchhHHhHhhhh
Q 041640 118 PAGNIPRTEQLLSACLSF 135 (140)
Q Consensus 118 ~~~W~~vC~~~~~FC~~~ 135 (140)
+-+|...| .||+|+
T Consensus 131 ~GGW~gf~----~f~~~~ 144 (146)
T d1k3ka_ 131 RGGWRGLK----AYCTQV 144 (146)
T ss_dssp TCSSHHHH----HHHHHT
T ss_pred cCChHHHH----HHHHHH
Confidence 44677666 788775
No 9
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=3.22 E-value=73 Score=16.30 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=2.6
Q ss_pred hhHHhHh
Q 041640 126 EQLLSAC 132 (140)
Q Consensus 126 ~~~~~FC 132 (140)
+..++||
T Consensus 20 spigkyc 26 (40)
T d2bbga_ 20 SPIGKYC 26 (40)
T ss_dssp CSSSSSC
T ss_pred ccccCEE
Confidence 3333333
No 10
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia coli [TaxId: 562]}
Probab=3.18 E-value=2e+02 Score=17.44 Aligned_cols=16 Identities=13% Similarity=-0.139 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCcccc
Q 041640 110 FHPGCYNQPAGNIPRT 125 (140)
Q Consensus 110 ~~~~~~~~~~~W~~vC 125 (140)
+.||-++|+-+|..+-
T Consensus 67 i~p~~hm~k~hWvsv~ 82 (118)
T d2fkia1 67 VRPSRHLNKAHWSTVY 82 (118)
T ss_dssp TCCCCSSCTTTEEEEE
T ss_pred ccccCccCCCceEEEE
Confidence 5689999999998765
Done!