BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041641
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 119 CGAHSPDSPLLLYLPGI-------DGVGLGLIMQHQRVGQIFDVW----CLHIPVKDRTS 167
C SP+ P++L + GI V L L Q RV D++ H+ + S
Sbjct: 19 CSWGSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAP-DLFGHGRSSHLEMVTSYS 77
Query: 168 FTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPDIDLVLIL 219
+ ++R ++ LP++P+ LVG S+GA LA A+A+ P LIL
Sbjct: 78 SLTFLAQIDRVIQ----ELPDQPLLLVGHSMGAMLATAIASVRPKKIKELIL 125
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 166 TSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPD--IDLVLI----L 219
+ F V+ V + V S P P++L+G S+G +A+ AA+ P +VLI L
Sbjct: 109 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 168
Query: 220 ANP--ATSF 226
ANP AT+F
Sbjct: 169 ANPESATTF 177
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 166 TSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPD--IDLVLI----L 219
+ F V+ V + V S P P++L+G S+G +A+ AA+ P +VLI L
Sbjct: 108 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 167
Query: 220 ANP--ATSF 226
ANP AT+F
Sbjct: 168 ANPESATTF 176
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 166 TSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPD--IDLVLI----L 219
+ F V+ V + V S P P++L+G S+G +A+ AA+ P +VLI L
Sbjct: 91 SDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 150
Query: 220 ANP--ATSF 226
ANP AT+F
Sbjct: 151 ANPESATTF 159
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 331 RLHAVKAQTLIISSGKDQLFPSQEEGERLRHALSKCQIRKFNDNGHF 377
RL +KAQTLI+ D+ P + G RL ++ ++ F D GH+
Sbjct: 224 RLAEIKAQTLIVWGRNDRFVP-MDAGLRLLSGIAGSELHIFRDCGHW 269
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 166 TSFTGLVKLVERTVRSENYRLPNRPIYLVGESLGACLALAVAAQNPD------IDLVLIL 219
+ F V+ V + V S P P++L+G S G +A+ AA+ P + L+L
Sbjct: 108 SDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVL 167
Query: 220 ANP--ATSF 226
ANP AT+F
Sbjct: 168 ANPESATTF 176
>pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 634 KLPGRFYYYFGKPIETEGRKQELRDREKCNELYIE-VKSEVEKCIAYLKEKRETDP 688
K+PG F+ G+P E E L DR L+++ K+EV+ + L+ E DP
Sbjct: 77 KIPGGFFKREGRPSEKETLVSRLIDR-PIRPLFVKGFKNEVQVVVTVLQHDLENDP 131
>pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 634 KLPGRFYYYFGKPIETEGRKQELRDREKCNELYIE-VKSEVEKCIAYLKEKRETDP 688
K+PG F+ G+P E E L DR L+++ K+EV+ + L+ E DP
Sbjct: 86 KIPGGFFKREGRPSEKETLVSRLIDR-PIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 634 KLPGRFYYYFGKPIETEGRKQELRDREKCNELYIE-VKSEVEKCIAYLKEKRETDP 688
K+PG F+ G+P E E L DR L+++ K+EV+ + L+ E DP
Sbjct: 86 KIPGGFFKREGRPSEKETLVSRLIDR-PIRPLFVKGFKNEVQVVVTVLQHDLENDP 140
>pdb|3LGD|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGD|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGG|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
pdb|3LGG|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
Length = 508
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 552 KLLWPDH--------SEFVRMAA----RFGAKIIPFGAVGEDDIGQVVFDYDDLMKIP 597
K+++ DH +E +RMA +F + F VG +D G + DY + + IP
Sbjct: 261 KIIYSDHRSKDVAVIAESIRMAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIP 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,990,445
Number of Sequences: 62578
Number of extensions: 901386
Number of successful extensions: 1950
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 13
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)