BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041642
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/265 (50%), Positives = 182/265 (68%), Gaps = 10/265 (3%)
Query: 1 MSLQVSASPTKIIQRNAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEE 60
M+ QVS P+ ++ KD R A+F PSIWGD FL+ +++ + +HQ+LKEE
Sbjct: 1 MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAE-TEKRHQQLKEE 58
Query: 61 IRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDEL 120
+R+M+ A + TQ L ID++QRLGVSYHF EI++ L ++ + D END L
Sbjct: 59 VRKMIVAPMANSTQK-LAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END-L 111
Query: 121 YYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENIL 180
Y S++FRLLR+HG +S DVF +FKD GNFK+S+ DV G+L LY+A++L VH E+IL
Sbjct: 112 YTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDIL 171
Query: 181 DEALAFTTSHLESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEA 240
DEA++FTT HL S+A + PL+E V HAL Q I RGL R+EARHY+ +YQ+ SHN+A
Sbjct: 172 DEAISFTTHHL-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA 230
Query: 241 LLTFAKLDFNKLQKLHQKELGDISR 265
LL FAK+DFN LQ LH+KEL +I R
Sbjct: 231 LLEFAKIDFNMLQFLHRKELSEICR 255
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 174/251 (69%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML A + +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLA-TGRKLAD 66
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EIDEIL +++ + +C ++L +LQFRLLRQHG
Sbjct: 67 TLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 119
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 180 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 238
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 239 LHKQELAQVSR 249
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 174/251 (69%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML A + +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLA-TGRKLAD 66
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EIDEIL +++ + +C ++L +LQFRLLRQHG
Sbjct: 67 TLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 119
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 180 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 238
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 239 LHKQELAQVSR 249
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 174/251 (69%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML A K +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMK-LAD 66
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EID+IL +++ + +C ++L +LQFRLLRQHG
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 119
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 180 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 238
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 239 LHKQELAQVSR 249
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 174/251 (69%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML A K +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMK-LAD 66
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EID+IL +++ + +C ++L +LQFRLLRQHG
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 119
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 180 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 238
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 239 LHKQELAQVSR 249
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 174/251 (69%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML A K +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMK-LAD 66
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EID+IL +++ + +C ++L +LQFRLLRQHG
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 119
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 180 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 238
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 239 LHKQELAQVSR 249
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 233 bits (593), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 122/251 (48%), Positives = 174/251 (69%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ D+ + + + + LKE+ R ML A K +
Sbjct: 8 NYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMK-LAD 66
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EID+IL +++ + +C ++L +LQFRLLRQHG
Sbjct: 67 TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 119
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 120 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 180 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 238
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 239 LHKQELAQVSR 249
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 173/251 (68%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ + + + + + LKE+ R ML A K +
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMK-LAD 68
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EID+IL +++ + +C ++L +LQFRLLRQHG
Sbjct: 69 TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 121
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 122 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 181
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 182 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 240
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 241 LHKQELAQVSR 251
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 230 bits (586), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 173/251 (68%), Gaps = 10/251 (3%)
Query: 16 NAEKDYTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN 75
N E++ R A+F PS+WGD+FLS++ + + + + + LKE+ R ML A K +
Sbjct: 10 NYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMK-LAD 68
Query: 76 NLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGC 135
L+LID I+RLG+SYHFE EID+IL +++ + +C ++L +LQFRLLRQHG
Sbjct: 69 TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGF 121
Query: 136 KISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIA 195
IS ++F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A
Sbjct: 122 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 181
Query: 196 AHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQK 254
H + SPL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ
Sbjct: 182 PH-LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQM 240
Query: 255 LHQKELGDISR 265
LH++EL +SR
Sbjct: 241 LHKQELAQVSR 251
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 226 bits (577), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 169/245 (68%), Gaps = 10/245 (4%)
Query: 22 TRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLID 81
R A+F PS+WGD+FLS++ + + + + + LKE+ R ML A K + L+LID
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMK-LADTLNLID 59
Query: 82 AIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADV 141
I+RLG+SYHFE EID+IL +++ + +C ++L +LQFRLLRQHG IS ++
Sbjct: 60 TIERLGISYHFEKEIDDILDQIYNQNSNC-------NDLCTSALQFRLLRQHGFNISPEI 112
Query: 142 FKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIGS 201
F +F+D +G FK SLA DV G+L+LYEA+H+ H ++IL++ALAF+T HLES A H + S
Sbjct: 113 FSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH-LKS 171
Query: 202 PLAERVKHALIQPIHRGLQRLEARHYI-PIYQEQSSHNEALLTFAKLDFNKLQKLHQKEL 260
PL E+V HAL Q +H+G+ R+E R +I IY ++ S N LL FAKLDFN LQ LH++EL
Sbjct: 172 PLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 231
Query: 261 GDISR 265
+SR
Sbjct: 232 AQVSR 236
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 170 bits (431), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 148/247 (59%), Gaps = 12/247 (4%)
Query: 23 RRSANFHPSIWGDRFL--SYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQ--NNLD 78
RRSA++ P+ W FL S T +S+E AK +L+ E+RR + N+ + L+
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAK--KLEAEVRREIN---NEKAEFLTLLE 69
Query: 79 LIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKIS 138
LID +QRLG+ Y FES+I L + + G L+ +L FRLLRQHG ++S
Sbjct: 70 LIDNVQRLGLGYRFESDIRRALDRFVSSG---GFDGVTKTSLHATALSFRLLRQHGFEVS 126
Query: 139 ADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQ 198
+ F FKD +GNF +L +D +LSLYEA+ L + ENILDEA F SHL+ ++ +
Sbjct: 127 QEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEK 186
Query: 199 IGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK 258
IG LAE+V HAL P+HR QRLEA I Y+++ N+ LL A LD+N +Q ++Q+
Sbjct: 187 IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQR 246
Query: 259 ELGDISR 265
+L + SR
Sbjct: 247 DLRETSR 253
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 141/247 (57%), Gaps = 6/247 (2%)
Query: 23 RRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDA 82
RRS N+ P++W ++ + ++ + EL ++R +LK + +P Q L+LI
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKM-EPVQQ-LELIHD 63
Query: 83 IQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYISLQFRLLRQHGCKISADVF 142
++ LG+S F+ EI EILG ++ H+ + E +LY+ +L FRLLRQHG IS DVF
Sbjct: 64 LKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVF 123
Query: 143 KRFKDSDG-NFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESI---AAHQ 198
FK+ G +FK SLA+D GML LYEA+ L E+ L+ A F T L+ ++
Sbjct: 124 NCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNE 183
Query: 199 IGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK 258
I L ++H+L P+H +Q +EAR +I Y + N + AKL+FN +Q HQ+
Sbjct: 184 IDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQ 243
Query: 259 ELGDISR 265
EL D+SR
Sbjct: 244 ELKDLSR 250
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 8/247 (3%)
Query: 23 RRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQN--NLDLI 80
RRS N++PS W F+ S+ D KH E+ ++K + K T L+LI
Sbjct: 2 RRSGNYNPSRWDVNFIQ----SLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELI 57
Query: 81 DAIQRLGVSYHFESEIDEILGKLH-EAHQDCGLGDNENDELYYISLQFRLLRQHGCKISA 139
D +QR+G+S HF++E EIL ++ + H E +LY SL FRLLR+HG +++
Sbjct: 58 DDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ 117
Query: 140 DVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHL-ESIAAHQ 198
+VF FK+ +G FK SL+ D G+L LYEA+ L E L+ A F T L E +
Sbjct: 118 EVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGG 177
Query: 199 IGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK 258
+ L R+ ++L P+H ++R A +I Y+++ N +L A LD N +Q Q+
Sbjct: 178 VDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQE 237
Query: 259 ELGDISR 265
EL + R
Sbjct: 238 ELKESFR 244
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 127/245 (51%), Gaps = 12/245 (4%)
Query: 24 RSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAI 83
R+ + P++W + +++ + + ++++ ML+ ++ + L+LID +
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVD--SIRRLELIDDL 93
Query: 84 QRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDE--LYYISLQFRLLRQHGCKISADV 141
+RLG+S HFE EI EIL + +NE DE LY +L+FRLLRQ+ +S +V
Sbjct: 94 RRLGISCHFEREIVEILNSKYYT-------NNEIDERDLYSTALRFRLLRQYDFSVSQEV 146
Query: 142 FKRFKDSDG-NFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAFTTSHLESIAAHQIG 200
F FK++ G +FK SL D G+L LYEA+ L E L A F T L+
Sbjct: 147 FDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKD 206
Query: 201 SPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKEL 260
L ++ AL P H +Q AR +I Y+ + N +L AKLDFN +Q Q+EL
Sbjct: 207 INLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQEL 266
Query: 261 GDISR 265
+ SR
Sbjct: 267 KEASR 271
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 25/213 (11%)
Query: 77 LDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGD---NENDELYYISLQFRLLRQH 133
L ++D I RLG+ HFE EI E L ++ + G+G N +L +L FRLLR H
Sbjct: 302 LLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLH 361
Query: 134 GCKISADVFKRFKDSDGNFKTSLA---KDVGGMLSLYEATHLGVHEENILDEALAFTTSH 190
+S +F FKD++G F S KDV ML+LY A+ L ENILDEA +F T +
Sbjct: 362 RYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKY 421
Query: 191 L-------ESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSS------- 236
L E+ +A L++ +K+AL H + R+EA+ Y +Y+ +
Sbjct: 422 LREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVY 481
Query: 237 -----HNEALLTFAKLDFNKLQKLHQKELGDIS 264
+NE L KLDFN +Q +HQ+E+ +++
Sbjct: 482 KLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVT 514
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 32/234 (13%)
Query: 64 MLKAYIN-KPTQNNLDL------IDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLG--- 113
+LK + N P LDL +D ++RLG+ HF+ EI E L ++ + G+G
Sbjct: 254 VLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWAR 313
Query: 114 DNENDELYYISLQFRLLRQHGCKISADVFKRFKDSDGNFKTSLA---KDVGGMLSLYEAT 170
+N ++ ++ R+LR HG +S+DV K F+D +G F L + V ML++ +
Sbjct: 314 ENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCS 373
Query: 171 HLGVHEENILDEALAFTTSHL----ESIAAHQ---IGSPLAERVKHALIQPIHRGLQRLE 223
H+ E I++EA T +L E++ A + V++AL P H+ + RLE
Sbjct: 374 HVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLE 433
Query: 224 ARHYI------------PIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISR 265
AR YI +Y NE L AKLDFNK+Q +HQ EL D+ R
Sbjct: 434 ARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRR 487
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 77 LDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLG---DNENDELYYISLQFRLLRQH 133
L L+D I+ LG+ HF+ EI L ++ + G+G D+ +L +L R LR H
Sbjct: 250 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMH 309
Query: 134 GCKISADVFKRFKDSDGNFKTSLAK---DVGGMLSLYEATHLGVHEENILDEALAFTTSH 190
G +S+DV FKD +G F +S + ++ +++L+ A+ L +E +D+A F +
Sbjct: 310 GYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPY 369
Query: 191 LESIAAHQIG--SPLAERVKHALIQPIHRGLQRLEARHYI------------PIYQEQSS 236
L A +I + L + +++ + P H + RLEAR YI +Y+ S
Sbjct: 370 LREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSL 429
Query: 237 HNEALLTFAKLDFNKLQKLHQKELGDISR 265
N L AKLDFN +Q LHQ+EL ++R
Sbjct: 430 SNSKCLELAKLDFNIVQSLHQEELKLLTR 458
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 79 LIDAIQRLGVSYHFESEIDEILGKLHEAHQDCGLGDNENDELYYI---SLQFRLLRQHGC 135
++D +QRLG+S +FE EI E L +H D G+ + I ++ FRLLRQHG
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 136 KISADVFKRFKDSDGNFKTSLAKD---VGGMLSLYEATHLGVHEENILDEALAFTTSHL- 191
++SADVFK F + +G F + + V GM +LY A+ L E IL A F+ ++L
Sbjct: 311 QVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLL 369
Query: 192 ------ESIAAHQIGSPLAERVKHALIQPIHRGLQRLEARHYI-------------PIYQ 232
E I I L + AL P + L R+E R YI +Y+
Sbjct: 370 EKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYR 429
Query: 233 EQSSHNEALLTFAKLDFNKLQKLHQKE 259
+N L AK D+N Q HQ E
Sbjct: 430 MPYVNNNGYLELAKQDYNNCQAQHQLE 456
>pdb|1XLM|A Chain A, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
pdb|1XLM|B Chain B, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
Length = 394
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 15/55 (27%)
Query: 73 TQNNLDLIDAIQRL------GVSYH---------FESEIDEILGKLHEAHQDCGL 112
T+ NLD ++A+ +L G+++H E+E ++ILG ++A +D GL
Sbjct: 29 TRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGL 83
>pdb|1DID|A Chain A, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DID|B Chain B, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DIE|A Chain A, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DIE|B Chain B, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1XLA|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLA|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLB|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLB|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLC|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLC|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLD|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLD|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLE|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLE|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLF|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLF|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLG|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLG|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLH|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLH|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLI|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLI|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLJ|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLJ|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLK|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLK|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLL|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLL|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
Length = 394
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 15/55 (27%)
Query: 73 TQNNLDLIDAIQRL------GVSYH---------FESEIDEILGKLHEAHQDCGL 112
T+ NLD ++A+ +L G+++H E+E ++ILG ++A +D GL
Sbjct: 29 TRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGL 83
>pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|B Chain B, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|C Chain C, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|D Chain D, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|E Chain E, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|F Chain F, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
Length = 332
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 192 ESIAAHQIGSPLAERVKHALIQPIHRGLQRLE 223
++IA +IG P+A RV HA+ P H RLE
Sbjct: 133 DAIAEGRIGRPIAARVFHAVYLPPHLQGWRLE 164
>pdb|2C9K|A Chain A, Structure Of The Functional Form Of The
Mosquito-Larvicidal Cry4aa Toxin From Bacillus
Thuringiensis At 2.8 A Resolution
Length = 612
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 33 WGDRFLSYTSDSMEKDDGSAKHQELKEEIRRM----------LKAYINKPT-QNNLDLID 81
W D F++ T + ++K+ S + + R LK + N P QN D+
Sbjct: 47 WSD-FITQTKNIIKKEIASTYISNANKILNRSFNVISTYHNHLKTWENNPNPQNTQDVRT 105
Query: 82 AIQRLGVSYHFESEIDEILGKLHEAHQDC 110
IQ V YHF++ I E++ DC
Sbjct: 106 QIQL--VHYHFQNVIPELVNSCPPNPSDC 132
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 52 AKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCG 111
A + E +E++ +L + + PTQ + DA+ ++G+ + + +D +L + D
Sbjct: 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVD-LLKLQSRENNDEA 709
Query: 112 LGDNENDELY 121
L D E EL+
Sbjct: 710 LTDEEFTELF 719
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 52 AKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCG 111
A + E +E++ +L + + PTQ + DA+ ++G+ + + +D +L + D
Sbjct: 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVD-LLKLQSRENNDEA 709
Query: 112 LGDNENDELY 121
L D E EL+
Sbjct: 710 LTDEEFTELF 719
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 52 AKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCG 111
A + E +E++ +L + + PTQ + DA+ ++G+ + + +D +L + D
Sbjct: 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVD-LLKLQSRENNDEA 709
Query: 112 LGDNENDELY 121
L D E EL+
Sbjct: 710 LTDEEFTELF 719
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 52 AKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCG 111
A + E +E++ +L + + PTQ + DA+ ++G+ + + +D +L + D
Sbjct: 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVD-LLKLQSRENNDEA 709
Query: 112 LGDNENDELY 121
L D E EL+
Sbjct: 710 LTDEEFTELF 719
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 52 AKHQELKEEIRRMLKAYINKPTQNNLDLIDAIQRLGVSYHFESEIDEILGKLHEAHQDCG 111
A + E +E++ +L + + PTQ + DA+ ++G+ + + +D +L + D
Sbjct: 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVD-LLKLQSRENNDEA 709
Query: 112 LGDNENDELY 121
L D E EL+
Sbjct: 710 LTDEEFTELF 719
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And
Oligo(A)
Length = 525
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 127 FRLLRQHGCKISADVFKRFKDSDGNFKTSLAKDVGGMLSLYEATHLGVHEENILDEALAF 186
++L++ + +V K+ SDG +A+D GG + Y + LGVH + L
Sbjct: 48 LKILQELAQRFVYEVSKKKNMSDG-----MARDAGGKIFTYGSYRLGVHGPGSDIDTLVV 102
Query: 187 TTSHLESIAAHQI-GSPLAERVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFA 245
H+ + S L ER + I P+ ++PI + + S L A
Sbjct: 103 VPKHVTREDFFTVFDSLLRERKELDEIAPVPDA--------FVPIIKIKFSGISIALICA 154
Query: 246 KLD 248
+LD
Sbjct: 155 RLD 157
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 43 DSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAI-QRLGVSYHF----ESEID 97
D E DG+ HQ L E ++ IN P +N L L + ++ V+ F ++E+D
Sbjct: 29 DVFEATDGAEXHQILSEYDINLVIXDINLPGKNGLLLARELREQANVALXFLTGRDNEVD 88
Query: 98 EILG 101
+ILG
Sbjct: 89 KILG 92
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 43 DSMEKDDGSAKHQELKEEIRRMLKAYINKPTQNNLDLIDAI-QRLGVSYHF----ESEID 97
D E DG+ HQ L E ++ IN P +N L L + ++ V+ F ++E+D
Sbjct: 29 DVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVD 88
Query: 98 EILG 101
+ILG
Sbjct: 89 KILG 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,771,734
Number of Sequences: 62578
Number of extensions: 321985
Number of successful extensions: 918
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 42
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)