BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041643
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETV 239
+AA LA++A + K IV+ GG+ L+KLL S + Q AA AL NIA+ E +
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAI 121
Query: 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274
+ IVD GV ++V +L +VQ A +A +A
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETV 239
+AA LA++A + K IV+ GG+ L+KLL S + Q AA AL NIA+ E +
Sbjct: 105 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAI 163
Query: 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274
+ IVD GV ++V +L +VQ A +A +A
Sbjct: 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 198
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETV 239
+AA +LA +A K IV+ GG+ L+KLL S + Q AA AL NIA+ E +
Sbjct: 21 EAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAI 79
Query: 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274
+ IVD GV ++V +L +VQ A +A +A
Sbjct: 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 114
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 68 VRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKK--VF 125
V+L TS+ ++ R A++A D ++ + VL + + +T+++ +K
Sbjct: 50 VKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAAR 108
Query: 126 SLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANE 185
+L + G + I D+ V + + + S D S +Q +AA
Sbjct: 109 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD----------SEVQK-------EAARA 151
Query: 186 LASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVD 244
LA++A + K IV+ GG+ L+KLL S + Q AA AL NIA+ ++ IVD
Sbjct: 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPTSAIKAIVD 210
Query: 245 VLGVPIIVSVLGEAPVKVQ 263
GV ++ +L +VQ
Sbjct: 211 AGGVEVLQKLLTSTDSEVQ 229
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 145/327 (44%), Gaps = 78/327 (23%)
Query: 200 IVEEGGILP-LLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVDVLGVPIIVSVL-- 255
+V + G++P L++ ++E Q AA AL NIA+ + +VD VP+ + +L
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 256 GEAPVKVQV--AVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPKPE--- 309
G VK Q A+ N+ DS ++V + N ++ L + KP
Sbjct: 185 GSVEVKEQAIWALGNVAG-----DSTDYRDYVLQCNAMEPILGLFNSN------KPSLIR 233
Query: 310 SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACA 369
+A T+ +L + KK + S V ++ A
Sbjct: 234 TATWTLSNLCRGKKPQPDWS------------------------------VVSQALPTLA 263
Query: 370 EALWKLSKGCLL-SLWSAESNAELRRSAFKTNSP--AAKAVLD-----QLLRLIHEESDA 421
+ ++ + L+ + W+ ++ ++ P A +AV+D +L+ L+ ES
Sbjct: 264 KLIYSMDTETLVDACWAI---------SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-T 313
Query: 422 MLQTPAIRSIGCLAKTFPAKEKRMI--GPLVAL---LSNRNVDVATEAVIALSKFVSPDN 476
++QTPA+R++G + + + +I G L AL LS+ ++ EA +S +
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA--- 370
Query: 477 FNRSEHSKAIIEFDGVPPLMRLLKISD 503
+E +A+I+ + +PPL++LL++++
Sbjct: 371 -GNTEQIQAVIDANLIPPLVKLLEVAE 396
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 148/333 (44%), Gaps = 69/333 (20%)
Query: 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVDVLG 247
L+R++ ++++ G + L++ ++E Q AA AL NIA+ + +VD
Sbjct: 29 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLP 306
VP+ + +L V+V+ + +A DS ++V + N ++ L +
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN------ 141
Query: 307 KPE---SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363
KP +A T+ +L + KK + S V ++
Sbjct: 142 KPSLIRTATWTLSNLCRGKKPQPDWS------------------------------VVSQ 171
Query: 364 VRIACAEALWKLSKGCLL-SLWSAESNAELRRSAFKTNSP--AAKAVLD-----QLLRLI 415
A+ ++ + L+ + W+ ++ ++ P A +AV+D +L+ L+
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAI---------SYLSDGPQEAIQAVIDVRIPKRLVELL 222
Query: 416 HEESDAMLQTPAIRSIGCLAKTFPAKEKRMI--GPLVAL---LSNRNVDVATEAVIALSK 470
ES ++QTPA+R++G + + + +I G L AL LS+ ++ EA +S
Sbjct: 223 SHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 281
Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
+ +E +A+I+ + +PPL++LL++++
Sbjct: 282 ITA----GNTEQIQAVIDANLIPPLVKLLEVAE 310
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 148/333 (44%), Gaps = 69/333 (20%)
Query: 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVDVLG 247
L+R++ ++++ G + L++ ++E Q AA AL NIA+ + +VD
Sbjct: 28 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 87
Query: 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLP 306
VP+ + +L V+V+ + +A DS ++V + N ++ L +
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN------ 140
Query: 307 KPE---SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363
KP +A T+ +L + KK + S V ++
Sbjct: 141 KPSLIRTATWTLSNLCRGKKPQPDWS------------------------------VVSQ 170
Query: 364 VRIACAEALWKLSKGCLL-SLWSAESNAELRRSAFKTNSP--AAKAVLD-----QLLRLI 415
A+ ++ + L+ + W+ ++ ++ P A +AV+D +L+ L+
Sbjct: 171 ALPTLAKLIYSMDTETLVDACWAI---------SYLSDGPQEAIQAVIDVRIPKRLVELL 221
Query: 416 HEESDAMLQTPAIRSIGCLAKTFPAKEKRMI--GPLVAL---LSNRNVDVATEAVIALSK 470
ES ++QTPA+R++G + + + +I G L AL LS+ ++ EA +S
Sbjct: 222 SHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 280
Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
+ +E +A+I+ + +PPL++LL++++
Sbjct: 281 ITA----GNTEQIQAVIDANLIPPLVKLLEVAE 309
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 148/333 (44%), Gaps = 69/333 (20%)
Query: 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVDVLG 247
L+R++ ++++ G + L++ ++E Q AA AL NIA+ + +VD
Sbjct: 27 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLP 306
VP+ + +L V+V+ + +A DS ++V + N ++ L +
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN------ 139
Query: 307 KPE---SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363
KP +A T+ +L + KK + S V ++
Sbjct: 140 KPSLIRTATWTLSNLCRGKKPQPDWS------------------------------VVSQ 169
Query: 364 VRIACAEALWKLSKGCLL-SLWSAESNAELRRSAFKTNSP--AAKAVLD-----QLLRLI 415
A+ ++ + L+ + W+ ++ ++ P A +AV+D +L+ L+
Sbjct: 170 ALPTLAKLIYSMDTETLVDACWAI---------SYLSDGPQEAIQAVIDVRIPKRLVELL 220
Query: 416 HEESDAMLQTPAIRSIGCLAKTFPAKEKRMI--GPLVAL---LSNRNVDVATEAVIALSK 470
ES ++QTPA+R++G + + + +I G L AL LS+ ++ EA +S
Sbjct: 221 SHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 279
Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
+ +E +A+I+ + +PPL++LL++++
Sbjct: 280 ITA----GNTEQIQAVIDANLIPPLVKLLEVAE 308
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 148/333 (44%), Gaps = 69/333 (20%)
Query: 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVDVLG 247
L+R++ ++++ G + L++ ++E Q AA AL NIA+ + +VD
Sbjct: 29 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLP 306
VP+ + +L V+V+ + +A DS ++V + N ++ L +
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN------ 141
Query: 307 KPE---SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363
KP +A T+ +L + KK + S V ++
Sbjct: 142 KPSLIRTATWTLSNLCRGKKPQPDWS------------------------------VVSQ 171
Query: 364 VRIACAEALWKLSKGCLL-SLWSAESNAELRRSAFKTNSP--AAKAVLD-----QLLRLI 415
A+ ++ + L+ + W+ ++ ++ P A +AV+D +L+ L+
Sbjct: 172 ALPTLAKLIYSMDTETLVDACWAI---------SYLSDGPQEAIQAVIDVRIPKRLVELL 222
Query: 416 HEESDAMLQTPAIRSIGCLAKTFPAKEKRMI--GPLVAL---LSNRNVDVATEAVIALSK 470
ES ++QTPA+R++G + + + +I G L AL LS+ ++ EA +S
Sbjct: 223 SHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 281
Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
+ +E +A+I+ + +PPL++LL++++
Sbjct: 282 ITA----GNTEQIQAVIDANLIPPLVKLLEVAE 310
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 148/333 (44%), Gaps = 69/333 (20%)
Query: 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVDVLG 247
L+R++ ++++ G + L++ ++E Q AA AL NIA+ + +VD
Sbjct: 27 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLP 306
VP+ + +L V+V+ + +A DS ++V + N ++ L +
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN------ 139
Query: 307 KPE---SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363
KP +A T+ +L + KK + S V ++
Sbjct: 140 KPSLIRTATWTLSNLCRGKKPQPDWS------------------------------VVSQ 169
Query: 364 VRIACAEALWKLSKGCLL-SLWSAESNAELRRSAFKTNSP--AAKAVLD-----QLLRLI 415
A+ ++ + L+ + W+ ++ ++ P A +AV+D +L+ L+
Sbjct: 170 ALPTLAKLIYSMDTETLVDACWAI---------SYLSDGPQEAIQAVIDVRIPKRLVELL 220
Query: 416 HEESDAMLQTPAIRSIGCLAKTFPAKEKRMI--GPLVAL---LSNRNVDVATEAVIALSK 470
ES ++QTPA+R++G + + + +I G L AL LS+ ++ EA +S
Sbjct: 221 SHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 279
Query: 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD 503
+ +E +A+I+ + +PPL++LL++++
Sbjct: 280 ITA----GNTEQIQAVIDANLIPPLVKLLEVAE 308
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 144/323 (44%), Gaps = 70/323 (21%)
Query: 200 IVEEGGILP-LLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVDVLGVPIIVSVLGE 257
+V + G++P L++ ++E Q AA AL NIA+ + +VD VP+ + +L
Sbjct: 38 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 97
Query: 258 APVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPKPE---SAKT 313
V+V+ + +A DS ++V + N ++ L + KP +A
Sbjct: 98 GSVEVKEQAIWALGNVAG-DSTDYRDYVLQCNAMEPILGLFNSN------KPSLIRTATW 150
Query: 314 TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALW 373
T+ +L + KK + S V ++ A+ ++
Sbjct: 151 TLSNLCRGKKPQPDWS------------------------------VVSQALPTLAKLIY 180
Query: 374 KLSKGCLL-SLWSAESNAELRRSAFKTNSP--AAKAVLD-----QLLRLIHEESDAMLQT 425
+ L+ + W+ ++ ++ P A +AV+D +L+ L+ ES ++QT
Sbjct: 181 SMDTETLVDACWAI---------SYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQT 230
Query: 426 PAIRSIGCLAKTFPAKEKRMI--GPLVAL---LSNRNVDVATEAVIALSKFVSPDNFNRS 480
PA+R++G + + + +I G L AL LS+ ++ EA +S + +
Sbjct: 231 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA----GNT 286
Query: 481 EHSKAIIEFDGVPPLMRLLKISD 503
E +A+I+ + +PPL++LL++++
Sbjct: 287 EQIQAVIDANLIPPLVKLLEVAE 309
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVH 508
LV LLS+ N + EA+ ALS S N E +A+I+ +P L++LL + +
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ 198
Query: 509 GLVFLCYLALSAGNS--KALEQARALNALE 536
++ S GN +A+++A AL LE
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLE 228
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLL 499
LV LLS+ N + EA+ ALS S N E +A+I+ +P L++LL
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLL 105
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 24/187 (12%)
Query: 389 NAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGP 448
+EL + + NSP + + L +L S Q A+ G L PA
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL----PA-------- 58
Query: 449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVH 508
LV LLS+ N + EA+ ALS S N E +A+I+ +P L++LL + +
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 509 GLVFLCYLALSAGNS--KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG 566
++ S GN +A+ A AL AL L P + +A++ L+ +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPAL-----VQLLSSPN-EQILQEALWALSNIASG 168
Query: 567 SHPHRQT 573
+ +Q
Sbjct: 169 GNEQKQA 175
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 389 NAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGP 448
+EL + + NSP + + L +L S Q A+ G L PA
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL----PA-------- 58
Query: 449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLL 499
LV LLS+ N + EA+ ALS S N E +A+I+ +P L++LL
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLL 105
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
+ +AA L ++A + N K++++ G + +KLL ++S D + A AL N+A D
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPK 155
Query: 239 VRFIV 243
R +V
Sbjct: 156 CRDLV 160
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 201 VEEGGILP-LLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEA 258
V + G++P ++ L P Q AA AL NIA+ E + ++D VPI V +LG +
Sbjct: 75 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 134
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
+ +AA L ++A + N K++++ G + +KLL ++S D + A AL N+A D
Sbjct: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPK 193
Query: 239 VRFIV 243
R +V
Sbjct: 194 CRDLV 198
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 201 VEEGGILP-LLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEA 258
V + G++P ++ L P Q AA AL NIA+ E + ++D VPI V +LG +
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVH 508
LV LLS+ N + EA+ ALS S N E +A+I+ +P L++LL + +
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 509 GLVFLCYLALSAGNS--KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG 566
++ S GN +A+ A AL AL L P + +A++ L+ +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPAL-----VQLLSSPN-EQILQEALWALSNIASG 168
Query: 567 SHPHRQT 573
+ +Q
Sbjct: 169 GNEQKQA 175
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 272 RMAELDSIAQEEFVRENVT------------RSLISLLCMDIALDLPKPESAKTTI 315
+M E+D I +EE ++E R++I C+DI DLPK + ++ I
Sbjct: 298 KMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRI 353
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
+ ++A L ++A N+ +I+++ G + P+ L + D Q A AL NIA D
Sbjct: 79 QFESAWVLTNIASGNSLQTRIVIQAGAV-PIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 239 VR-FIVDVLGVPIIVSVL 255
R +++D +P ++ +
Sbjct: 138 CRDYVLDCNILPPLLQLF 155
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238
+ ++A L ++A N+ +I+++ G + P+ L + D Q A AL NIA D
Sbjct: 82 QFESAWVLTNIASGNSLQTRIVIQAGAV-PIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 239 VR-FIVDVLGVPIIVSVL 255
R +++D +P ++ +
Sbjct: 141 CRDYVLDCNILPPLLQLF 158
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQV 264
G++P + L+ AA+ + A F I DQ + FI G +I +V GE ++
Sbjct: 179 GVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT---GPDVIKTVTGEEVTMEEL 235
Query: 265 AVANL-VARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTT 314
A+ +A+ A E + R L+S L + + D P+ ++A T
Sbjct: 236 GGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPRYQAAAPT 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,683,857
Number of Sequences: 62578
Number of extensions: 492962
Number of successful extensions: 1676
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1650
Number of HSP's gapped (non-prelim): 36
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)