Query 041643
Match_columns 576
No_of_seqs 303 out of 1011
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 09:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 1.1E-45 2.4E-50 372.1 17.2 363 167-565 76-496 (526)
2 KOG0166 Karyopherin (importin) 100.0 9.6E-44 2.1E-48 381.8 21.8 363 165-566 69-487 (514)
3 PLN03200 cellulose synthase-in 100.0 6.7E-34 1.5E-38 342.9 37.4 434 90-571 29-644 (2102)
4 PLN03200 cellulose synthase-in 100.0 5.6E-31 1.2E-35 317.8 34.3 351 165-562 407-764 (2102)
5 KOG4224 Armadillo repeat prote 99.9 5.6E-24 1.2E-28 217.0 20.0 299 168-551 132-440 (550)
6 KOG4224 Armadillo repeat prote 99.9 9.6E-24 2.1E-28 215.3 21.3 316 114-527 121-455 (550)
7 KOG0166 Karyopherin (importin) 99.9 3.1E-20 6.7E-25 200.7 25.0 358 115-513 105-481 (514)
8 COG5064 SRP1 Karyopherin (impo 99.8 8.8E-18 1.9E-22 170.8 23.3 366 90-511 85-489 (526)
9 PF05804 KAP: Kinesin-associat 99.7 2.8E-15 6E-20 169.9 31.3 346 167-565 295-652 (708)
10 PF05804 KAP: Kinesin-associat 99.7 7.7E-15 1.7E-19 166.3 28.6 302 182-538 269-584 (708)
11 KOG1048 Neural adherens juncti 99.6 9E-14 1.9E-18 155.1 21.8 306 166-536 237-612 (717)
12 KOG1048 Neural adherens juncti 99.4 1.9E-11 4E-16 136.8 22.4 320 167-541 280-665 (717)
13 cd00020 ARM Armadillo/beta-cat 99.4 1.8E-11 4E-16 107.7 14.3 100 199-299 2-102 (120)
14 cd00020 ARM Armadillo/beta-cat 99.3 7.7E-11 1.7E-15 103.7 13.7 110 165-275 10-120 (120)
15 PF04826 Arm_2: Armadillo-like 99.2 4.2E-10 9.1E-15 114.3 18.7 200 199-523 7-210 (254)
16 PRK09687 putative lyase; Provi 99.2 2.8E-10 6.1E-15 117.4 17.1 216 168-513 60-277 (280)
17 PRK09687 putative lyase; Provi 99.2 5.4E-10 1.2E-14 115.3 19.0 232 166-537 27-259 (280)
18 PF04826 Arm_2: Armadillo-like 99.1 4.3E-09 9.4E-14 107.0 20.3 190 165-438 15-207 (254)
19 PF10508 Proteasom_PSMB: Prote 99.1 4.3E-08 9.2E-13 109.3 27.7 272 163-517 78-365 (503)
20 KOG4199 Uncharacterized conser 99.1 1E-07 2.2E-12 98.1 25.8 302 172-560 117-442 (461)
21 PRK13800 putative oxidoreducta 98.9 1.1E-07 2.3E-12 113.1 23.9 241 165-516 624-865 (897)
22 KOG4500 Rho/Rac GTPase guanine 98.9 2.3E-07 5E-12 98.0 20.4 295 197-535 80-407 (604)
23 KOG4199 Uncharacterized conser 98.8 2.8E-06 6.1E-11 87.7 27.0 336 114-539 22-382 (461)
24 PF10508 Proteasom_PSMB: Prote 98.8 3.4E-06 7.3E-11 94.2 28.8 293 168-535 125-438 (503)
25 PRK13800 putative oxidoreducta 98.7 6.2E-07 1.4E-11 106.6 21.7 241 164-514 654-895 (897)
26 KOG2122 Beta-catenin-binding p 98.7 4E-07 8.7E-12 106.7 18.5 264 177-519 312-602 (2195)
27 KOG2122 Beta-catenin-binding p 98.6 4.2E-07 9E-12 106.6 14.2 224 177-472 366-600 (2195)
28 cd00256 VATPase_H VATPase_H, r 98.6 3.6E-06 7.8E-11 91.3 20.2 268 159-472 140-424 (429)
29 KOG1222 Kinesin associated pro 98.6 2.5E-05 5.5E-10 83.8 25.6 345 164-564 306-665 (791)
30 PF00514 Arm: Armadillo/beta-c 98.5 7.9E-08 1.7E-12 70.0 4.1 41 193-234 1-41 (41)
31 KOG4646 Uncharacterized conser 98.4 1.2E-06 2.6E-11 79.9 8.9 131 161-297 15-146 (173)
32 PF00514 Arm: Armadillo/beta-c 98.3 7.3E-07 1.6E-11 64.9 4.3 41 235-275 1-41 (41)
33 PF03224 V-ATPase_H_N: V-ATPas 98.3 2.9E-05 6.3E-10 81.4 17.9 220 173-464 68-305 (312)
34 cd00256 VATPase_H VATPase_H, r 98.3 7.9E-05 1.7E-09 81.0 21.2 131 168-299 107-239 (429)
35 KOG0168 Putative ubiquitin fus 98.3 6.4E-05 1.4E-09 85.3 20.9 130 166-298 171-304 (1051)
36 KOG2160 Armadillo/beta-catenin 98.2 1.6E-05 3.4E-10 83.2 13.9 127 173-301 94-222 (342)
37 PF01602 Adaptin_N: Adaptin N 98.1 2.8E-05 6.1E-10 86.4 14.2 325 156-522 108-448 (526)
38 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00089 1.9E-08 75.9 24.9 285 163-528 23-357 (970)
39 PF01602 Adaptin_N: Adaptin N 98.0 0.00068 1.5E-08 75.4 21.2 283 160-522 77-373 (526)
40 smart00185 ARM Armadillo/beta- 97.9 2E-05 4.3E-10 56.5 5.0 40 194-234 2-41 (41)
41 KOG2160 Armadillo/beta-catenin 97.9 0.0002 4.3E-09 75.1 14.2 133 168-300 130-265 (342)
42 KOG4500 Rho/Rac GTPase guanine 97.9 0.00083 1.8E-08 71.8 18.3 274 167-517 228-518 (604)
43 PF13646 HEAT_2: HEAT repeats; 97.9 3.4E-05 7.3E-10 64.6 6.5 86 408-514 1-88 (88)
44 KOG1222 Kinesin associated pro 97.9 0.0049 1.1E-07 66.8 23.6 299 182-538 283-598 (791)
45 TIGR02270 conserved hypothetic 97.7 0.0037 7.9E-08 68.2 21.3 56 444-517 240-295 (410)
46 PF03224 V-ATPase_H_N: V-ATPas 97.7 7E-05 1.5E-09 78.5 7.6 127 171-299 159-293 (312)
47 KOG1293 Proteins containing ar 97.7 0.0052 1.1E-07 68.7 22.0 349 167-523 14-538 (678)
48 KOG2759 Vacuolar H+-ATPase V1 97.7 0.0024 5.3E-08 68.2 18.3 265 160-473 154-438 (442)
49 smart00185 ARM Armadillo/beta- 97.6 0.00014 3.1E-09 52.0 5.2 39 236-274 2-40 (41)
50 KOG1241 Karyopherin (importin) 97.6 0.0055 1.2E-07 69.5 19.4 386 157-576 358-779 (859)
51 TIGR02270 conserved hypothetic 97.5 0.0058 1.2E-07 66.7 18.1 197 203-516 53-265 (410)
52 KOG2023 Nuclear transport rece 97.5 0.0068 1.5E-07 67.9 18.5 394 119-563 128-547 (885)
53 PTZ00429 beta-adaptin; Provisi 97.4 0.018 3.9E-07 67.2 22.8 135 160-300 138-310 (746)
54 COG1413 FOG: HEAT repeat [Ener 97.4 0.018 3.9E-07 60.5 20.9 213 164-504 45-258 (335)
55 KOG3678 SARM protein (with ste 97.4 0.0064 1.4E-07 65.7 16.8 264 165-521 183-455 (832)
56 PTZ00429 beta-adaptin; Provisi 97.4 0.065 1.4E-06 62.7 26.0 255 166-518 72-326 (746)
57 KOG2171 Karyopherin (importin) 97.4 0.029 6.3E-07 66.4 22.8 324 168-523 85-466 (1075)
58 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00038 8.3E-09 53.6 4.4 55 219-273 1-55 (55)
59 PF13646 HEAT_2: HEAT repeats; 97.3 0.00091 2E-08 55.9 7.0 84 166-271 3-88 (88)
60 COG1413 FOG: HEAT repeat [Ener 97.2 0.013 2.9E-07 61.6 16.8 186 204-516 43-240 (335)
61 KOG2759 Vacuolar H+-ATPase V1 97.2 0.027 5.9E-07 60.4 18.7 285 168-516 120-436 (442)
62 KOG2171 Karyopherin (importin) 97.2 0.011 2.3E-07 70.0 16.8 174 206-457 346-529 (1075)
63 KOG1293 Proteins containing ar 97.1 0.031 6.7E-07 62.8 18.2 79 202-281 417-496 (678)
64 KOG0168 Putative ubiquitin fus 97.0 0.0038 8.3E-08 71.4 11.1 138 159-300 208-347 (1051)
65 KOG1062 Vesicle coat complex A 96.8 0.61 1.3E-05 53.9 26.2 316 150-522 130-548 (866)
66 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0018 3.9E-08 49.8 4.3 50 422-471 2-55 (55)
67 PF05536 Neurochondrin: Neuroc 96.5 0.025 5.4E-07 64.0 12.3 134 164-300 7-152 (543)
68 KOG4646 Uncharacterized conser 96.4 0.011 2.3E-07 54.5 7.4 96 204-300 16-111 (173)
69 KOG1062 Vesicle coat complex A 96.4 0.77 1.7E-05 53.1 23.4 276 168-517 113-413 (866)
70 PF09759 Atx10homo_assoc: Spin 96.2 0.017 3.7E-07 50.8 7.3 66 179-244 3-70 (102)
71 KOG1789 Endocytosis protein RM 96.1 2.9 6.3E-05 49.9 25.9 342 180-536 1743-2136(2235)
72 PF09759 Atx10homo_assoc: Spin 96.0 0.034 7.4E-07 48.9 8.1 67 222-288 3-72 (102)
73 KOG1517 Guanine nucleotide bin 95.9 0.21 4.5E-06 59.0 15.6 223 222-517 484-731 (1387)
74 KOG2973 Uncharacterized conser 95.8 1.3 2.7E-05 46.4 19.7 115 166-286 7-122 (353)
75 KOG1059 Vesicle coat complex A 95.8 0.84 1.8E-05 52.2 19.8 135 150-300 132-268 (877)
76 KOG1077 Vesicle coat complex A 95.7 2.8 6E-05 48.1 23.2 277 163-507 112-422 (938)
77 KOG1061 Vesicle coat complex A 95.3 0.66 1.4E-05 53.4 17.1 71 162-236 121-191 (734)
78 KOG1061 Vesicle coat complex A 95.2 0.24 5.2E-06 56.8 13.3 281 172-523 96-420 (734)
79 KOG0946 ER-Golgi vesicle-tethe 95.1 1.4 3E-05 51.1 18.5 218 247-536 23-260 (970)
80 COG5215 KAP95 Karyopherin (imp 95.1 0.39 8.4E-06 53.6 13.8 349 120-502 322-692 (858)
81 KOG2023 Nuclear transport rece 95.1 0.12 2.6E-06 58.3 10.0 68 204-272 128-200 (885)
82 KOG0213 Splicing factor 3b, su 94.7 0.17 3.7E-06 57.8 10.1 70 402-472 879-953 (1172)
83 PF05536 Neurochondrin: Neuroc 94.7 0.18 3.8E-06 57.2 10.3 96 177-276 72-169 (543)
84 KOG3678 SARM protein (with ste 94.6 0.17 3.7E-06 55.1 9.2 161 353-536 187-354 (832)
85 COG5181 HSH155 U2 snRNP splice 94.2 0.23 5E-06 55.7 9.4 71 401-472 683-758 (975)
86 KOG1824 TATA-binding protein-i 94.1 2.2 4.8E-05 50.3 17.2 261 174-474 621-887 (1233)
87 KOG1242 Protein containing ada 93.9 3.9 8.4E-05 46.2 18.5 306 205-561 97-444 (569)
88 KOG1517 Guanine nucleotide bin 93.9 3 6.5E-05 49.8 18.0 206 202-488 510-743 (1387)
89 KOG1060 Vesicle coat complex A 93.8 7 0.00015 45.6 20.2 249 216-521 154-461 (968)
90 KOG1059 Vesicle coat complex A 93.5 2.4 5.2E-05 48.7 15.9 275 207-546 147-429 (877)
91 KOG0213 Splicing factor 3b, su 93.5 3.3 7.1E-05 47.9 16.8 260 162-522 799-1069(1172)
92 KOG1060 Vesicle coat complex A 93.3 1.9 4.1E-05 50.0 14.8 66 407-473 393-458 (968)
93 COG5096 Vesicle coat complex, 93.2 0.42 9E-06 55.6 9.8 100 407-516 93-193 (757)
94 PF05004 IFRD: Interferon-rela 93.2 13 0.00027 39.3 20.2 115 157-274 38-159 (309)
95 PF02985 HEAT: HEAT repeat; I 92.9 0.13 2.9E-06 34.8 3.3 28 445-472 1-28 (31)
96 PF10165 Ric8: Guanine nucleot 92.7 19 0.00042 39.9 22.9 126 171-298 41-190 (446)
97 KOG2259 Uncharacterized conser 92.6 1.6 3.5E-05 49.7 12.8 112 160-279 195-314 (823)
98 PF02985 HEAT: HEAT repeat; I 92.2 0.24 5.2E-06 33.6 3.8 29 206-235 2-30 (31)
99 PF12348 CLASP_N: CLASP N term 92.0 6 0.00013 39.0 15.2 106 172-278 17-126 (228)
100 PF12717 Cnd1: non-SMC mitotic 91.4 0.77 1.7E-05 44.1 7.9 90 421-519 2-93 (178)
101 PF11698 V-ATPase_H_C: V-ATPas 91.4 0.47 1E-05 42.9 5.9 67 406-472 43-114 (119)
102 PF12755 Vac14_Fab1_bd: Vacuol 90.6 0.78 1.7E-05 40.0 6.4 66 205-274 28-95 (97)
103 PF10165 Ric8: Guanine nucleot 90.3 1.3 2.9E-05 49.0 9.4 115 184-299 3-133 (446)
104 PF08045 CDC14: Cell division 89.7 2 4.4E-05 44.0 9.4 82 220-301 106-189 (257)
105 COG5240 SEC21 Vesicle coat com 89.7 23 0.00051 40.1 17.9 119 407-536 451-575 (898)
106 PF14668 RICTOR_V: Rapamycin-i 89.6 1.8 3.9E-05 35.8 7.3 66 222-288 4-70 (73)
107 COG5181 HSH155 U2 snRNP splice 89.5 8.6 0.00019 43.8 14.6 261 206-566 606-874 (975)
108 COG5369 Uncharacterized conser 89.4 1.6 3.5E-05 48.6 8.8 138 223-436 405-545 (743)
109 PF14668 RICTOR_V: Rapamycin-i 88.8 1.1 2.4E-05 37.0 5.6 65 461-530 4-70 (73)
110 KOG0567 HEAT repeat-containing 88.8 30 0.00066 35.7 16.8 76 420-516 200-278 (289)
111 KOG1824 TATA-binding protein-i 88.6 7.1 0.00015 46.4 13.6 82 208-300 821-903 (1233)
112 PF11698 V-ATPase_H_C: V-ATPas 88.2 1.5 3.2E-05 39.7 6.4 73 161-234 42-115 (119)
113 KOG1241 Karyopherin (importin) 88.2 60 0.0013 38.1 22.5 334 163-574 130-492 (859)
114 PF06371 Drf_GBD: Diaphanous G 87.8 4.5 9.8E-05 38.6 10.1 105 168-274 72-186 (187)
115 KOG2973 Uncharacterized conser 87.5 42 0.0009 35.5 20.4 86 207-297 6-91 (353)
116 KOG1242 Protein containing ada 87.0 61 0.0013 36.9 22.4 88 206-298 256-343 (569)
117 PF14664 RICTOR_N: Rapamycin-i 86.9 5.5 0.00012 43.1 11.1 134 162-300 108-252 (371)
118 PF05659 RPW8: Arabidopsis bro 86.5 3.5 7.5E-05 38.8 8.2 76 31-110 17-92 (147)
119 PF12348 CLASP_N: CLASP N term 85.7 4.8 0.0001 39.7 9.3 119 404-524 92-212 (228)
120 PF12717 Cnd1: non-SMC mitotic 85.6 5.3 0.00012 38.3 9.2 91 176-276 2-93 (178)
121 KOG1943 Beta-tubulin folding c 84.8 74 0.0016 38.7 19.4 68 204-275 341-409 (1133)
122 COG5096 Vesicle coat complex, 84.4 7 0.00015 45.8 10.9 105 160-274 90-194 (757)
123 COG5215 KAP95 Karyopherin (imp 83.5 82 0.0018 36.0 17.9 96 206-307 364-465 (858)
124 PF13251 DUF4042: Domain of un 82.7 4.1 8.8E-05 39.7 7.0 116 356-474 50-175 (182)
125 PF11701 UNC45-central: Myosin 81.8 2.9 6.3E-05 39.5 5.5 101 170-272 51-156 (157)
126 COG5369 Uncharacterized conser 81.4 3.2 6.9E-05 46.4 6.3 110 406-519 431-546 (743)
127 PF12755 Vac14_Fab1_bd: Vacuol 81.0 3.6 7.8E-05 35.8 5.4 65 405-471 26-94 (97)
128 PF12719 Cnd3: Nuclear condens 80.9 6.7 0.00015 40.8 8.5 116 406-522 26-147 (298)
129 PF08045 CDC14: Cell division 80.8 17 0.00037 37.4 11.0 80 180-259 109-189 (257)
130 KOG1789 Endocytosis protein RM 80.2 13 0.00028 44.8 10.9 106 168-276 1777-1884(2235)
131 KOG1240 Protein kinase contain 79.4 88 0.0019 38.7 17.4 70 202-275 417-491 (1431)
132 PF14664 RICTOR_N: Rapamycin-i 79.4 98 0.0021 33.5 21.2 126 170-300 33-159 (371)
133 PF04063 DUF383: Domain of unk 79.0 12 0.00025 36.9 8.8 93 205-298 53-157 (192)
134 KOG2062 26S proteasome regulat 79.0 8 0.00017 44.8 8.5 118 384-517 527-652 (929)
135 PF12719 Cnd3: Nuclear condens 78.7 14 0.00031 38.3 10.1 110 161-276 25-144 (298)
136 PF11841 DUF3361: Domain of un 78.4 56 0.0012 31.2 12.9 115 168-283 17-140 (160)
137 PF11841 DUF3361: Domain of un 76.6 20 0.00044 34.2 9.3 103 198-300 5-114 (160)
138 KOG1240 Protein kinase contain 76.6 1.5E+02 0.0032 36.8 18.2 98 175-276 436-538 (1431)
139 KOG1078 Vesicle coat complex C 75.4 1.8E+02 0.0039 34.5 19.5 65 165-235 248-312 (865)
140 COG5116 RPN2 26S proteasome re 74.9 6.9 0.00015 44.1 6.5 97 406-518 551-650 (926)
141 KOG4535 HEAT and armadillo rep 74.6 5.5 0.00012 44.1 5.6 91 418-515 495-600 (728)
142 COG5231 VMA13 Vacuolar H+-ATPa 72.3 78 0.0017 33.7 13.0 255 170-472 157-427 (432)
143 COG5240 SEC21 Vesicle coat com 71.8 77 0.0017 36.2 13.5 64 212-278 272-335 (898)
144 PF08167 RIX1: rRNA processing 70.1 23 0.0005 33.6 8.3 115 157-275 20-143 (165)
145 PF05918 API5: Apoptosis inhib 68.3 33 0.00071 39.1 10.2 75 421-504 36-110 (556)
146 KOG2734 Uncharacterized conser 67.9 40 0.00087 37.2 10.2 115 181-297 103-233 (536)
147 KOG0414 Chromosome condensatio 66.4 23 0.00049 43.3 8.7 92 404-504 958-1049(1251)
148 KOG2999 Regulator of Rac1, req 65.9 49 0.0011 37.5 10.5 137 163-300 84-225 (713)
149 KOG1058 Vesicle coat complex C 65.4 1.4E+02 0.003 35.3 14.2 232 206-498 245-488 (948)
150 PF05918 API5: Apoptosis inhib 65.4 24 0.00052 40.2 8.3 87 173-270 33-120 (556)
151 PF12460 MMS19_C: RNAPII trans 64.2 74 0.0016 34.8 11.9 102 176-279 283-398 (415)
152 KOG3036 Protein involved in ce 63.7 92 0.002 32.0 11.2 106 178-286 141-257 (293)
153 PF12031 DUF3518: Domain of un 63.6 16 0.00036 37.1 6.0 81 219-299 138-227 (257)
154 KOG0212 Uncharacterized conser 62.9 40 0.00086 38.3 9.2 90 201-298 332-422 (675)
155 KOG4151 Myosin assembly protei 62.5 1.5E+02 0.0032 35.0 14.0 176 116-300 501-682 (748)
156 cd03569 VHS_Hrs_Vps27p VHS dom 59.1 44 0.00096 31.0 7.7 110 119-234 3-114 (142)
157 KOG0567 HEAT repeat-containing 59.0 41 0.00089 34.8 7.9 81 170-271 195-276 (289)
158 PF05004 IFRD: Interferon-rela 58.2 2.5E+02 0.0053 29.6 16.7 56 219-274 200-256 (309)
159 PF13764 E3_UbLigase_R4: E3 ub 56.5 3.1E+02 0.0067 32.9 15.7 58 199-256 112-173 (802)
160 KOG4151 Myosin assembly protei 56.1 63 0.0014 38.0 9.6 126 167-297 509-636 (748)
161 PF03130 HEAT_PBS: PBS lyase H 56.0 5 0.00011 26.3 0.6 26 460-500 1-26 (27)
162 PF11701 UNC45-central: Myosin 55.9 44 0.00095 31.5 7.3 88 422-515 58-156 (157)
163 smart00567 EZ_HEAT E-Z type HE 55.4 10 0.00022 25.1 2.1 15 459-473 2-16 (30)
164 PF06025 DUF913: Domain of Unk 54.6 83 0.0018 34.2 10.0 109 178-286 125-243 (379)
165 KOG4413 26S proteasome regulat 51.3 3.4E+02 0.0074 29.2 20.6 121 174-295 94-220 (524)
166 KOG2062 26S proteasome regulat 50.5 40 0.00088 39.4 6.9 58 174-240 567-624 (929)
167 COG5116 RPN2 26S proteasome re 50.3 37 0.00081 38.6 6.4 31 203-234 550-581 (926)
168 PF07923 N1221: N1221-like pro 48.2 27 0.00058 36.4 4.9 58 158-215 56-127 (293)
169 KOG2611 Neurochondrin/leucine- 48.2 1.3E+02 0.0029 33.7 10.1 128 168-298 17-162 (698)
170 PF12031 DUF3518: Domain of un 46.0 48 0.0011 33.8 6.0 81 177-258 139-228 (257)
171 KOG0413 Uncharacterized conser 45.8 62 0.0013 39.0 7.5 122 364-516 947-1071(1529)
172 PF07814 WAPL: Wings apart-lik 44.4 93 0.002 33.5 8.4 93 206-298 23-116 (361)
173 PF11791 Aconitase_B_N: Aconit 44.3 30 0.00064 32.7 3.9 30 204-234 92-123 (154)
174 PF01347 Vitellogenin_N: Lipop 44.2 98 0.0021 35.4 9.1 76 421-514 504-585 (618)
175 KOG1077 Vesicle coat complex A 43.8 6.2E+02 0.013 30.0 19.0 328 154-532 138-502 (938)
176 PF04063 DUF383: Domain of unk 43.3 1.1E+02 0.0023 30.1 7.9 83 162-246 52-144 (192)
177 PF08216 CTNNBL: Catenin-beta- 42.2 31 0.00068 30.7 3.6 40 223-262 64-103 (108)
178 COG5231 VMA13 Vacuolar H+-ATPa 42.1 36 0.00078 36.1 4.5 70 163-233 357-427 (432)
179 KOG1991 Nuclear transport rece 41.6 1.1E+02 0.0024 37.0 8.8 125 406-536 410-550 (1010)
180 PF12460 MMS19_C: RNAPII trans 40.9 1.6E+02 0.0034 32.3 9.6 111 402-520 267-396 (415)
181 KOG1943 Beta-tubulin folding c 40.8 8E+02 0.017 30.4 19.7 112 159-276 338-458 (1133)
182 PF11865 DUF3385: Domain of un 40.3 1.6E+02 0.0035 27.8 8.5 69 205-273 87-155 (160)
183 PF12054 DUF3535: Domain of un 40.1 5.6E+02 0.012 28.4 14.4 108 177-289 102-211 (441)
184 KOG1078 Vesicle coat complex C 39.4 2.3E+02 0.005 33.6 10.7 73 203-279 240-315 (865)
185 COG5098 Chromosome condensatio 38.7 1.7E+02 0.0036 34.5 9.3 105 404-517 931-1036(1128)
186 KOG2734 Uncharacterized conser 37.2 3.6E+02 0.0078 30.1 11.2 120 177-297 241-370 (536)
187 PF00790 VHS: VHS domain; Int 37.1 98 0.0021 28.4 6.3 112 117-234 2-118 (140)
188 PF06685 DUF1186: Protein of u 35.0 4.1E+02 0.0089 27.2 10.8 91 423-527 58-152 (249)
189 KOG2259 Uncharacterized conser 34.9 1.1E+02 0.0023 35.7 7.0 87 175-272 386-472 (823)
190 PF04078 Rcd1: Cell differenti 34.3 2.9E+02 0.0062 28.6 9.5 107 178-286 112-228 (262)
191 PF12830 Nipped-B_C: Sister ch 32.2 1.7E+02 0.0037 28.3 7.4 67 405-472 7-73 (187)
192 KOG3665 ZYG-1-like serine/thre 32.0 1.4E+02 0.003 35.3 7.8 94 185-278 494-590 (699)
193 PF07814 WAPL: Wings apart-lik 32.0 2.2E+02 0.0048 30.6 8.8 91 165-256 24-116 (361)
194 KOG1967 DNA repair/transcripti 31.5 8.5E+02 0.018 29.7 13.7 63 407-469 951-1020(1030)
195 PF14726 RTTN_N: Rotatin, an a 31.0 3.4E+02 0.0074 23.7 8.2 63 206-269 32-94 (98)
196 smart00638 LPD_N Lipoprotein N 28.8 1.3E+02 0.0028 34.2 6.8 76 421-514 460-541 (574)
197 KOG3036 Protein involved in ce 28.7 3.5E+02 0.0075 28.0 8.8 97 181-279 98-201 (293)
198 PF10363 DUF2435: Protein of u 28.1 2.3E+02 0.0049 24.4 6.6 64 409-473 6-72 (92)
199 PF08324 PUL: PUL domain; Int 27.8 1E+02 0.0023 31.1 5.3 108 174-282 122-238 (268)
200 cd03561 VHS VHS domain family; 27.8 4.5E+02 0.0096 23.8 9.0 88 428-518 21-112 (133)
201 cd03561 VHS VHS domain family; 27.5 4.2E+02 0.0091 24.0 8.7 71 164-234 39-112 (133)
202 PF11791 Aconitase_B_N: Aconit 26.3 50 0.0011 31.2 2.4 27 446-472 96-122 (154)
203 PF01347 Vitellogenin_N: Lipop 25.9 1.8E+02 0.004 33.2 7.4 109 158-278 427-556 (618)
204 smart00288 VHS Domain present 25.4 3.8E+02 0.0082 24.4 8.0 71 164-234 39-111 (133)
205 KOG4535 HEAT and armadillo rep 24.5 3.4E+02 0.0073 30.7 8.4 124 345-474 47-180 (728)
206 KOG1058 Vesicle coat complex C 24.5 1.5E+02 0.0034 34.9 6.1 54 422-475 221-274 (948)
207 PF06685 DUF1186: Protein of u 21.6 3.8E+02 0.0083 27.4 7.9 75 203-286 72-153 (249)
208 PLN03205 ATR interacting prote 20.4 3.3E+02 0.0072 30.0 7.3 160 405-569 322-521 (652)
209 PF08167 RIX1: rRNA processing 20.2 6.8E+02 0.015 23.6 8.9 79 206-286 27-111 (165)
210 PF14663 RasGEF_N_2: Rapamycin 20.1 2.8E+02 0.006 24.7 5.8 40 205-245 9-48 (115)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-45 Score=372.08 Aligned_cols=363 Identities=20% Similarity=0.231 Sum_probs=295.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHh-hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHH
Q 041643 167 FISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVD 244 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La-~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~ 244 (576)
+.+.|.+.+.|++..|......+- +...+..+.++++|.||.+|++|++....-.|++|||||+|+++. +.+++.+|+
T Consensus 76 lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd 155 (526)
T COG5064 76 LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD 155 (526)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe
Confidence 367889999999999998876544 444456788889999999999996654378999999999999995 566777889
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643 245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE 324 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~ 324 (576)
+||||.|+++|.++..+|++++.|||+|+|++++.+|+.+.+.|++.||+.+|.+.. .. -++++..+|
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~---------~~---ismlRn~TW 223 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA---------IH---ISMLRNATW 223 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc---------ch---HHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999997531 01 134677777
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhcccchHHHHhhhccCchh
Q 041643 325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAESNAELRRSAFKTNSPA 403 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~~~~lrr~a~k~~s~a 403 (576)
+-++.|+|+++.|.++..+..+|.+.|.....||+|. .+|+||+.||++|..+.| +|.+.+
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evl----vDA~WAiSYlsDg~~E~i~avld~g-------------- 285 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVL----VDACWAISYLSDGPNEKIQAVLDVG-------------- 285 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHH----HHHHHHHHHhccCcHHHHHHHHhcC--------------
Confidence 7777888998899887666677777788889999874 789999999999987665 444432
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-------------------------------------------
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA------------------------------------------- 440 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~------------------------------------------- 440 (576)
....|+++|.+++ ..+|+|++|++||+++....
T Consensus 286 ---~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteq 361 (526)
T COG5064 286 ---IPGRLVELLSHES-AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQ 361 (526)
T ss_pred ---CcHHHHHHhcCcc-ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHH
Confidence 2345777777654 89999999999999873210
Q ss_pred ----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHH
Q 041643 441 ----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCY 515 (576)
Q Consensus 441 ----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~ 515 (576)
.+.+.|||||++|.+.+..+++||+||++|..++++. .+++.+++++.|.|+|||.||...+. +-..++.++-|
T Consensus 362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~en 440 (526)
T COG5064 362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIEN 440 (526)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHH
Confidence 1234689999999999999999999999999988875 57999999999999999999998776 43334666667
Q ss_pred HhcccCchHHHHhccch---hh-Hh---hhhcccCCCCCcHHHHHHHHHHHHHhhcC
Q 041643 516 LALSAGNSKALEQARAL---NA-LE---GAARTVLPQHPELRDLFAQAIYHLTLYQA 565 (576)
Q Consensus 516 lal~~~~~~~l~~~~~l---~~-Le---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~ 565 (576)
+ +++|...+...-.-+ .+ .| |++.++.+|+..++++|.||++|++.||+
T Consensus 441 i-Lk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 441 I-LKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred H-HhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 7 777877665532222 22 23 88889999999999999999999999996
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-44 Score=381.81 Aligned_cols=363 Identities=20% Similarity=0.212 Sum_probs=283.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhc-CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARD-NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFI 242 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~-~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~i 242 (576)
..+++.+.+++.+.+..+...+..|.+. ..+....++..|.||.||++|+.++++..|++|||||+|+|+ ++++++.+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3447899999998888888887665533 224456666779999999999877659999999999999999 56888999
Q ss_pred HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643 243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322 (576)
Q Consensus 243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~ 322 (576)
+++|+||.|+++|.+++..++++|+|||+|+|++++.+|+.+...|+++||+.++...+ . +. -++++.|+-
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~----~--~~---~lRn~tW~L 219 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD----K--LS---MLRNATWTL 219 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc----c--hH---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997542 0 00 123333333
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhcccchHHHHhhhccCc
Q 041643 323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAESNAELRRSAFKTNS 401 (576)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~~~~lrr~a~k~~s 401 (576)
. +.+.|+.+.|.+...+..+|.+.+...+.|++|. .+|+|||.||++|..+.| +|.+.
T Consensus 220 s----Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl----~Da~WAlsyLsdg~ne~iq~vi~~------------- 278 (514)
T KOG0166|consen 220 S----NLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL----TDACWALSYLTDGSNEKIQMVIDA------------- 278 (514)
T ss_pred H----HHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHHhcCChHHHHHHHHc-------------
Confidence 3 3344554444443333345544566778898874 899999999999987765 44443
Q ss_pred hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc------------------------h-----------------
Q 041643 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP------------------------A----------------- 440 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~------------------------~----------------- 440 (576)
+++++|+.+|.+.+ ..+++||+|++||+++... .
T Consensus 279 ----gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 279 ----GVVPRLVDLLGHSS-PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred ----cchHHHHHHHcCCC-cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 47888999998755 7889999999999887311 0
Q ss_pred -------hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHH
Q 041643 441 -------KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVF 512 (576)
Q Consensus 441 -------~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~ 512 (576)
.+++++|+|+++|+++++++++||+|||+|++++++ +++.+++++.|+|+|||.||...|. +...++.+
T Consensus 354 ~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~---~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 354 QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT---PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC---HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 134678999999999999999999999999999886 7999999999999999999987776 65557777
Q ss_pred HHHHhcccCchHHHHh-ccchhhHh---hhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643 513 LCYLALSAGNSKALEQ-ARALNALE---GAARTVLPQHPELRDLFAQAIYHLTLYQAG 566 (576)
Q Consensus 513 L~~lal~~~~~~~l~~-~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~ 566 (576)
|.+| +.++.....-+ +.+-..+| |+++++.+|.|++++||++|+.|++.||+.
T Consensus 431 l~ni-l~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 431 LENI-LKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHH-HHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 7777 44444333222 23233344 788888889999999999999999999994
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=6.7e-34 Score=342.87 Aligned_cols=434 Identities=16% Similarity=0.150 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHchhcCccchhhhccccccHHHHHHHHHhhh-----cchHHHhhhcccCc------cccCCCCCCCcc
Q 041643 90 AKNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSI-----GDMRWLLTIFDSDE------VNLSLPPIASND 158 (576)
Q Consensus 90 ~~t~~~a~~~~~~C~~~g~~~r~~~i~~~~~l~~l~~~L~~~~-----~~~~~ll~~s~~~~------~~~~lp~ia~~~ 158 (576)
.+...++...++...+.+...|.+..-..|.++.|+..|.+.. ..+..+.+++.++. ..+.+||+
T Consensus 29 ~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppL---- 104 (2102)
T PLN03200 29 PQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPL---- 104 (2102)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH----
Confidence 4556667778888888887777665446899999999995321 22557777876641 13456665
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--ccc----------------------------------------
Q 041643 159 PILAWVWSFISTIQMGQIKSRVDAANELASLARDN--NRN---------------------------------------- 196 (576)
Q Consensus 159 ~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~--~~~---------------------------------------- 196 (576)
+.+|++|+.+.|++||.+|++|+.++ +.+
T Consensus 105 ---------V~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs 175 (2102)
T PLN03200 105 ---------LSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLC 175 (2102)
T ss_pred ---------HHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHh
Confidence 78888888888888888888887653 222
Q ss_pred ------HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCC-hhHHHHHHH
Q 041643 197 ------RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAP-VKVQVAVAN 268 (576)
Q Consensus 197 ------~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~-~~vq~~Aa~ 268 (576)
++.|++.|+||+|+++|++++ +..|++|+++|.+++.+ ++.+..|+++|+||.||++|++++ ..+|++|+|
T Consensus 176 ~~~en~~~~IIeaGaVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~ 254 (2102)
T PLN03200 176 GSTDGFWSATLEAGGVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAG 254 (2102)
T ss_pred cCccchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHH
Confidence 234578899999999999888 99999999999999875 678999999999999999998754 689999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCchhHHHhhccccc---cC-CC----cchhhhhHHHHHHhhhcc-----------c----
Q 041643 269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIA---LD-LP----KPESAKTTIHSLVQMKKE-----------M---- 325 (576)
Q Consensus 269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~---~~-~~----~~i~~~~si~~~v~~~~~-----------~---- 325 (576)
+|.||+++++++|+.+.+.|+||+|++++.+... +. +. ....| ++.++-..... .
T Consensus 255 AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~Avw--ALsNIcgg~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 255 ALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMG--ALANICGGMSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHH--HHHHHhCCchhhHHHHHHhhcccchHH
Confidence 9999999999999999999999999999975421 00 00 01111 22211110000 0
Q ss_pred ---------ccc---c--------------------cccCCCCCCCCC------------C---------CCCCCCcccc
Q 041643 326 ---------TEK---S--------------------TNVTNNSDGSSR------------G---------GHGQHYNKKD 352 (576)
Q Consensus 326 ---------~~~---~--------------------~~~~~~~~~~~~------------~---------~~g~~~~~~~ 352 (576)
.+. . +.+.+..|.... + .++++.+...
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L 412 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL 412 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence 000 0 000000000000 0 0000000000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHH
Q 041643 353 RELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIG 432 (576)
Q Consensus 353 ~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLg 432 (576)
....+. ++|.+++++||+|++++.+ .+++.. ..++++.|+++|.+++ +.+|.+|+++|+
T Consensus 413 L~~~~~----evQ~~Av~aL~~L~~~~~e----------~~~aIi------~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~ 471 (2102)
T PLN03200 413 ITMATA----DVQEELIRALSSLCCGKGG----------LWEALG------GREGVQLLISLLGLSS-EQQQEYAVALLA 471 (2102)
T ss_pred hccCCH----HHHHHHHHHHHHHhCCCHH----------HHHHHH------HcCcHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 111223 4578999999999988653 333222 2357899999999865 899999999999
Q ss_pred HHhcCCch-h----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HH
Q 041643 433 CLAKTFPA-K----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQ 506 (576)
Q Consensus 433 nLa~~~~~-~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq 506 (576)
||+..... + +.|+||+|+++|++++.+++++|+|+|+|++.+. .+.++.|.+.|++++|+++|++++. +|
T Consensus 472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIppLV~LL~sgd~~~q 547 (2102)
T PLN03200 472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPALLWLLKNGGPKGQ 547 (2102)
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99975543 2 4689999999999999999999999999998742 3445556689999999999999987 89
Q ss_pred HHHHHHHHHHhcccCchHHH---------------------------------------HhccchhhHhhhhcccCCCCC
Q 041643 507 VHGLVFLCYLALSAGNSKAL---------------------------------------EQARALNALEGAARTVLPQHP 547 (576)
Q Consensus 507 ~~A~~~L~~lal~~~~~~~l---------------------------------------~~~~~l~~Le~~~~~~~~q~~ 547 (576)
..|+++|++++.+..+ +.+ ..+|+++ ....+|.+
T Consensus 548 ~~Aa~AL~nLi~~~d~-~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~------~Lv~LL~s 620 (2102)
T PLN03200 548 EIAAKTLTKLVRTADA-ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR------TLIQLLSS 620 (2102)
T ss_pred HHHHHHHHHHHhccch-hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH------HHHHHHcC
Confidence 9999999999643221 110 0123333 44445678
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCC
Q 041643 548 ELRDLFAQAIYHLTLYQAGSHPHR 571 (576)
Q Consensus 548 ~~~~l~~~a~~~l~~y~~~~~~~~ 571 (576)
..++++++|...|..|++|.+.+.
T Consensus 621 gs~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 621 SKEETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred CCHHHHHHHHHHHHHHhcCChHHH
Confidence 889999999999999999876643
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.6e-31 Score=317.77 Aligned_cols=351 Identities=18% Similarity=0.156 Sum_probs=270.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIV 243 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv 243 (576)
..+|.+|.+++.+.|.+++.+|.+|+.+++++++.|++.|+||+||++|++++ ...|+.|+|+|.||+.. .+++..|+
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34688899999999999999999999888899999999999999999999998 99999999999999984 56888999
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~ 323 (576)
++|+||+|+++|++++.++|++|+|+|+|++.++++.|..+.++|+||+|+++|++++.. . ......++.++.....
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~--~-q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPK--G-QEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHH--H-HHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999998888999999999999999999877410 0 0001113333322111
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643 324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA 403 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a 403 (576)
.. .++.+......+|+.+ +..+.++|.++..... .+ +.++.+. .
T Consensus 563 ~~-------------------~I~~Lv~LLlsdd~~~----~~~aL~vLgnIlsl~~-------~~-d~~~~g~-----~ 606 (2102)
T PLN03200 563 AA-------------------TISQLTALLLGDLPES----KVHVLDVLGHVLSVAS-------LE-DLVREGS-----A 606 (2102)
T ss_pred hh-------------------HHHHHHHHhcCCChhH----HHHHHHHHHHHHhhcc-------hh-HHHHHhh-----h
Confidence 10 0011001122344443 3456666666532111 11 1111111 0
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCC
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN 478 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~ 478 (576)
..++++.|++++++++ +..+..|+.+|+|++.+.++. ..++||||+.+|++++++++++|||||+|++.+++
T Consensus 607 ~~ggL~~Lv~LL~sgs-~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-- 683 (2102)
T PLN03200 607 ANDALRTLIQLLSSSK-EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-- 683 (2102)
T ss_pred ccccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC--
Confidence 1367899999999875 899999999999999765442 45899999999999999999999999999997553
Q ss_pred CHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHH
Q 041643 479 RSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAI 557 (576)
Q Consensus 479 ~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~ 557 (576)
.+++.++++.|++|||++||+.++. +...|+.+|.+++.+.....++.++|++++|..+-|.. .++.++-...|+
T Consensus 684 -~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G---~~~~k~~Aa~AL 759 (2102)
T PLN03200 684 -ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG---TLEGKRNAARAL 759 (2102)
T ss_pred -HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC---ChHHHHHHHHHH
Confidence 5777889999999999999998876 77889999999998888888899999999997554444 355666666666
Q ss_pred HHHHh
Q 041643 558 YHLTL 562 (576)
Q Consensus 558 ~~l~~ 562 (576)
..|-.
T Consensus 760 ~~L~~ 764 (2102)
T PLN03200 760 AQLLK 764 (2102)
T ss_pred HHHHh
Confidence 66644
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.6e-24 Score=217.00 Aligned_cols=299 Identities=21% Similarity=0.268 Sum_probs=243.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG 247 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga 247 (576)
+-.+.+.+.+.+.+|..+|.||+.- +.|+..|...|++.||.+|-++.+ ...|.+|..+|.||+...++|+.+|.+|+
T Consensus 132 i~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs~EnRr~LV~aG~ 209 (550)
T KOG4224|consen 132 ILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHSRENRRVLVHAGG 209 (550)
T ss_pred HHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhhhhhhhhhhccCC
Confidence 4555677889999999999999997 789999999999999999888888 99999999999999999999999999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcC--CchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVREN--VTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM 325 (576)
Q Consensus 248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g--~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~ 325 (576)
+|.||.+|++++.++|+.+..+++|++- +...|..+++.| .||.||+|++++.
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s------------------------ 264 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS------------------------ 264 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC------------------------
Confidence 9999999999999999999999999995 578899999988 9999999996541
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643 326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405 (576)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~ 405 (576)
+ .+|-.|+.||.+|+.....++.+.++
T Consensus 265 --------------------------------~----kvkcqA~lALrnlasdt~Yq~eiv~a----------------- 291 (550)
T KOG4224|consen 265 --------------------------------D----KVKCQAGLALRNLASDTEYQREIVEA----------------- 291 (550)
T ss_pred --------------------------------h----HHHHHHHHHHhhhcccchhhhHHHhc-----------------
Confidence 1 14567999999999765554444443
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----hhhCcHHHHHHhhcCCCH-HHHHHHHHHHHhhcCCCCCCCH
Q 041643 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----KEKRMIGPLVALLSNRNV-DVATEAVIALSKFVSPDNFNRS 480 (576)
Q Consensus 406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL~~~~~-~V~~eAa~AL~nla~~~n~~~~ 480 (576)
+.++.|+++|++.- -.+....+-+|.|++-..-+ .+.|++.|||++|+.++. ++|..|.-+|.|+|... .
T Consensus 292 g~lP~lv~Llqs~~-~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass----e 366 (550)
T KOG4224|consen 292 GSLPLLVELLQSPM-GPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS----E 366 (550)
T ss_pred CCchHHHHHHhCcc-hhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh----h
Confidence 35789999997644 33344556678888753322 367899999999997755 49999999999998532 3
Q ss_pred HHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh--hhhcccCCCCCcHHH
Q 041643 481 EHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALE--GAARTVLPQHPELRD 551 (576)
Q Consensus 481 ~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le--~~~~~~~~q~~~~~~ 551 (576)
.+++.|.+.|+||.|..|+..+.. +|..--.++..++++..+.+.+...|+++.|- --++.+.+|...-..
T Consensus 367 ~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 367 HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHH
Confidence 567899999999999999998876 88764445567788888899999999999985 333555566654333
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.6e-24 Score=215.32 Aligned_cols=316 Identities=20% Similarity=0.266 Sum_probs=248.4
Q ss_pred hccccccHHHHHHHHHhhhcc-------hHHHhhhcccC----ccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHH
Q 041643 114 SITTNADFKKVFSLLESSIGD-------MRWLLTIFDSD----EVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDA 182 (576)
Q Consensus 114 ~i~~~~~l~~l~~~L~~~~~~-------~~~ll~~s~~~----~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~A 182 (576)
.|+.-.+++.|+.+.-+..-. +-|-+-..+.+ ...+++.|+ +.+-++.+...+.+|
T Consensus 121 liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pl-------------trLakskdirvqrna 187 (550)
T KOG4224|consen 121 LIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPL-------------TRLAKSKDIRVQRNA 187 (550)
T ss_pred EEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhh-------------HhhcccchhhHHHHH
Confidence 577889999999998542221 22322222222 223344443 444456688889999
Q ss_pred HHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC--CHHHHHHhhcCCCh
Q 041643 183 ANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL--GVPIIVSVLGEAPV 260 (576)
Q Consensus 183 A~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G--avp~LV~lL~s~~~ 260 (576)
...|.++... .+||+.++.+||+|-||.+|++++ ++.|+.+..|+.|++-+..+|+.++++| .||.||+|+.++++
T Consensus 188 tgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~ 265 (550)
T KOG4224|consen 188 TGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD 265 (550)
T ss_pred HHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh
Confidence 9999999875 899999999999999999999999 9999999999999999999999999999 99999999999999
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCC
Q 041643 261 KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSS 340 (576)
Q Consensus 261 ~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~ 340 (576)
++|.+|..+|.|||++ .+++..|.+.|++|.||+||+++..
T Consensus 266 kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~-------------------------------------- 306 (550)
T KOG4224|consen 266 KVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMG-------------------------------------- 306 (550)
T ss_pred HHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcch--------------------------------------
Confidence 9999999999999975 6888899999999999999965310
Q ss_pred CCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCC
Q 041643 341 RGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESD 420 (576)
Q Consensus 341 ~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~ 420 (576)
| -+ ..-..++.+++-..-+-.-++| .|++.+|+++|+-+|+
T Consensus 307 ------p-----------li-----lasVaCIrnisihplNe~lI~d-----------------agfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 307 ------P-----------LI-----LASVACIRNISIHPLNEVLIAD-----------------AGFLRPLVRLLRAGDN 347 (550)
T ss_pred ------h-----------HH-----HHHHHHHhhcccccCcccceec-----------------ccchhHHHHHHhcCCc
Confidence 0 00 1223455555543211112222 2568899999999998
Q ss_pred hhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhH
Q 041643 421 AMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPL 495 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~L 495 (576)
+++|..|+.+|.|||...+- ++.|.||.|..|+..+...+|.+-..+++.++-.+ +.+.++.+.|.++.|
T Consensus 348 EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-----~~k~~lld~gi~~iL 422 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-----NDKEALLDSGIIPIL 422 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-----ccHHHHhhcCCccee
Confidence 99999999999999974432 36689999999999999999999888888888655 458899999999999
Q ss_pred HHhhccChh-HHHHHHHHHHHHhcccCchHHHH
Q 041643 496 MRLLKISDR-AQVHGLVFLCYLALSAGNSKALE 527 (576)
Q Consensus 496 v~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~ 527 (576)
+-++.+.++ ++-+|+.+|.|++.++.+-.++.
T Consensus 423 Ip~t~s~s~Ev~gNaAaAL~Nlss~v~~Yarvi 455 (550)
T KOG4224|consen 423 IPWTGSESEEVRGNAAAALINLSSDVEHYARVI 455 (550)
T ss_pred ecccCccchhhcccHHHHHHhhhhhhHHHHHHH
Confidence 999988766 88889999999988776654443
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.1e-20 Score=200.66 Aligned_cols=358 Identities=16% Similarity=0.194 Sum_probs=247.6
Q ss_pred ccccccHHHHHHHHHhhhc-----chHHHhh-hcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643 115 ITTNADFKKVFSLLESSIG-----DMRWLLT-IFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS 188 (576)
Q Consensus 115 i~~~~~l~~l~~~L~~~~~-----~~~~ll~-~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~ 188 (576)
.+..|.++.++.-|+.... +..|-+. +...+...-. -++..+++.. ++.+|++.+.+.+++|.++|+|
T Consensus 105 vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~--~vv~agavp~----fi~Ll~s~~~~v~eQavWALgN 178 (514)
T KOG0166|consen 105 VIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK--VVVDAGAVPI----FIQLLSSPSADVREQAVWALGN 178 (514)
T ss_pred HHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc--ccccCCchHH----HHHHhcCCcHHHHHHHHHHHhc
Confidence 3456999999999974321 3567664 3332210000 0111222222 4899999999999999999999
Q ss_pred HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-hHHHHHHcCCHHHHHHhhcCCChhHHHHHH
Q 041643 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRFIVDVLGVPIIVSVLGEAPVKVQVAVA 267 (576)
Q Consensus 189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa 267 (576)
++.+++..|..+++.|+++||+.++...+......+++|+|.||+++.. .-..-.-..++|.|..+|.+.++++...|+
T Consensus 179 Iagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~ 258 (514)
T KOG0166|consen 179 IAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDAC 258 (514)
T ss_pred cccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999887734788999999999999763 222233356899999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCC
Q 041643 268 NLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQH 347 (576)
Q Consensus 268 ~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (576)
|||++|+.+.++.-+.+.+.|++|.||.+|...... ...+.-+++.+++......+. ...+.|+++
T Consensus 259 WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~---v~~PaLRaiGNIvtG~d~QTq-----------~vi~~~~L~ 324 (514)
T KOG0166|consen 259 WALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK---VVTPALRAIGNIVTGSDEQTQ-----------VVINSGALP 324 (514)
T ss_pred HHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc---cccHHHhhccceeeccHHHHH-----------HHHhcChHH
Confidence 999999988888888999999999999999754210 011111222222211111100 000112333
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHH
Q 041643 348 YNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTP 426 (576)
Q Consensus 348 ~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~ 426 (576)
.+.... ...|+- .+|..|+|++.|++.|+.+.| +|+++ ++++.|+.++++++ .+++..
T Consensus 325 ~l~~ll-~~s~~~--~ikkEAcW~iSNItAG~~~qiqaVida-----------------~l~p~Li~~l~~~e-f~~rKE 383 (514)
T KOG0166|consen 325 VLSNLL-SSSPKE--SIKKEACWTISNITAGNQEQIQAVIDA-----------------NLIPVLINLLQTAE-FDIRKE 383 (514)
T ss_pred HHHHHh-ccCcch--hHHHHHHHHHHHhhcCCHHHHHHHHHc-----------------ccHHHHHHHHhccc-hHHHHH
Confidence 211111 111111 256789999999999987765 44443 47899999999887 789999
Q ss_pred HHHHHHHHhcCCchh------hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC-CCCCC---HHHHHHHHHCCCcHhHH
Q 041643 427 AIRSIGCLAKTFPAK------EKRMIGPLVALLSNRNVDVATEAVIALSKFVSP-DNFNR---SEHSKAIIEFDGVPPLM 496 (576)
Q Consensus 427 a~~aLgnLa~~~~~~------~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~-~n~~~---~~~~~~Iv~~ggi~~Lv 496 (576)
|+.||+|++...... +.|+|+||..+|...+.++...+--+|.|+--. +..-. ......|.+.||+..+=
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE 463 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIE 463 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHH
Confidence 999999998766532 458999999999988988888788888876311 11000 23456788899999887
Q ss_pred HhhccChh-HHHHHHHHH
Q 041643 497 RLLKISDR-AQVHGLVFL 513 (576)
Q Consensus 497 ~LL~~~d~-vq~~A~~~L 513 (576)
.|=.+.++ +=..|...+
T Consensus 464 ~LQ~hen~~Iy~~A~~II 481 (514)
T KOG0166|consen 464 NLQSHENEEIYKKAYKII 481 (514)
T ss_pred HhhccccHHHHHHHHHHH
Confidence 76666554 555566644
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.80 E-value=8.8e-18 Score=170.75 Aligned_cols=366 Identities=16% Similarity=0.174 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHc--hh-cCccchhhhccccccHHHHHHHHHhhhcch-----HHHhhh-ccc--C-cc----ccCCCC
Q 041643 90 AKNLDRSLTLVRRC--KH-AGVLRHVFSITTNADFKKVFSLLESSIGDM-----RWLLTI-FDS--D-EV----NLSLPP 153 (576)
Q Consensus 90 ~~t~~~a~~~~~~C--~~-~g~~~r~~~i~~~~~l~~l~~~L~~~~~~~-----~~ll~~-s~~--~-~~----~~~lp~ 153 (576)
.+..-.|..-+|+. +. ++-...+ +.+|-+|+++..++.+-.++ .|.+.. +.. + .. ..++|.
T Consensus 85 ie~q~qav~kFR~~LS~E~~PPIq~V---IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 85 IEQQLQAVYKFRKLLSKETSPPIQPV---IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred HHHHHHHHHHHHHHhccccCCCchhH---HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 33344455566654 22 3344433 46899999999998766653 676643 322 1 11 113333
Q ss_pred CCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC-hHHHHHHHHHHHHh
Q 041643 154 IASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS-PDAQTAAANALFNI 232 (576)
Q Consensus 154 ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~-~~~q~~AA~AL~nL 232 (576)
+ |++|.++..+.|++|.++|+|+|.+++.+|+.|.+.|++.||+.+|.+... ...-.+|.|.|.||
T Consensus 162 f-------------iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 162 F-------------IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred H-------------HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 3 899999999999999999999999999999999999999999999988751 36778999999999
Q ss_pred hcC--C-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcch
Q 041643 233 ATD--Q-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPE 309 (576)
Q Consensus 233 a~~--~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i 309 (576)
+.. | .+...|- -++|.|.+|+.+.++++...|.||+.+|+....++-+++...|..+.||++|.+++.+- .-
T Consensus 229 cRGknP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i---qt 303 (526)
T COG5064 229 CRGKNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI---QT 303 (526)
T ss_pred hCCCCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc---cC
Confidence 983 3 3333332 37999999999999999999999999999888888899999999999999998763210 11
Q ss_pred hhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhccc
Q 041643 310 SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAES 388 (576)
Q Consensus 310 ~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~ 388 (576)
+...++.++|-..... .....+.|.++.+-... +.| |..++..|||.+.+++.||.+.| +|+|.
T Consensus 304 PalR~vGNIVTG~D~Q-----------TqviI~~G~L~a~~~lL--s~~--ke~irKEaCWTiSNITAGnteqiqavid~ 368 (526)
T COG5064 304 PALRSVGNIVTGSDDQ-----------TQVIINCGALKAFRSLL--SSP--KENIRKEACWTISNITAGNTEQIQAVIDA 368 (526)
T ss_pred HHHHhhcCeeecCccc-----------eehheecccHHHHHHHh--cCh--hhhhhhhhheeecccccCCHHHHHHHHhc
Confidence 1112333333222211 11111111222110111 122 12356789999999999998876 66665
Q ss_pred chHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch--------hhhCcHHHHHHhhcCCCHHH
Q 041643 389 NAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA--------KEKRMIGPLVALLSNRNVDV 460 (576)
Q Consensus 389 ~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~--------~~~~~I~~LV~LL~~~~~~V 460 (576)
+ ++++|+.+|+..+ -..+..|+.|+.|.....-. .+.|+|.||-++|.-.+..+
T Consensus 369 n-----------------liPpLi~lls~ae-~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki 430 (526)
T COG5064 369 N-----------------LIPPLIHLLSSAE-YKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI 430 (526)
T ss_pred c-----------------cchHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence 4 5789999998766 56788899999999764422 25689999999997665555
Q ss_pred HHHHHHHHHhhcCC---------CCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHH
Q 041643 461 ATEAVIALSKFVSP---------DNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLV 511 (576)
Q Consensus 461 ~~eAa~AL~nla~~---------~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~ 511 (576)
-+.+--++-|+--. .|. .....++-++||...+-.+=.+.+. +=..|..
T Consensus 431 iev~LD~~eniLk~Ge~d~~~~~~ni--n~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYs 489 (526)
T COG5064 431 IEVALDAIENILKVGEQDRLRYGKNI--NIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYS 489 (526)
T ss_pred hhhhHHHHHHHHhhhhHHHHhccCCc--cHHHHHHHhcccHHHHHHhhhccccHHHHHHHH
Confidence 55555555554322 221 1234466669999888888777665 4334444
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.73 E-value=2.8e-15 Score=169.91 Aligned_cols=346 Identities=17% Similarity=0.207 Sum_probs=246.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL 246 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G 246 (576)
++..|+.++.+....+...|..|+-. .+|+..+.+.|.||+|+++|++++ .+.+..|.++|+|||.+++.|..|++.|
T Consensus 295 Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~~R~~mV~~G 372 (708)
T PF05804_consen 295 LVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPELRSQMVSLG 372 (708)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHCC
Confidence 48899999999999999999999886 789999999999999999999998 9999999999999999999999999999
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643 247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT 326 (576)
Q Consensus 247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~ 326 (576)
.||.|+.+|.+++ .+..+...|.+|+. ++++|..|...++||.|+++|-.+...+.... ..++..........+
T Consensus 373 lIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e---liaL~iNLa~~~rna 446 (708)
T PF05804_consen 373 LIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLE---LIALLINLALNKRNA 446 (708)
T ss_pred CcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHH---HHHHHHHHhcCHHHH
Confidence 9999999998764 45678888899996 56899999999999999998755421111100 001100000000000
Q ss_pred ccccccCCCCCCCCCCCCCCCCcc-cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643 327 EKSTNVTNNSDGSSRGGHGQHYNK-KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~ 405 (576)
..+..+ +|++.+. +.....||- ....+.|+|..+. ..+. .|.
T Consensus 447 ----------qlm~~g-~gL~~L~~ra~~~~D~l--------LlKlIRNiS~h~~----------~~k~-~f~------- 489 (708)
T PF05804_consen 447 ----------QLMCEG-NGLQSLMKRALKTRDPL--------LLKLIRNISQHDG----------PLKE-LFV------- 489 (708)
T ss_pred ----------HHHHhc-CcHHHHHHHHHhcccHH--------HHHHHHHHHhcCc----------hHHH-HHH-------
Confidence 001111 3555421 112233432 3467788876531 2232 232
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCC--CHHHHHHHHHHHHhhcCCCCCC
Q 041643 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNR--NVDVATEAVIALSKFVSPDNFN 478 (576)
Q Consensus 406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~--~~~V~~eAa~AL~nla~~~n~~ 478 (576)
..|..|+.++.+++++++...|+++|+||.-...+ .+.+.+|-|.++|..+ +.++.-|++..++.++++.
T Consensus 490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~--- 566 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP--- 566 (708)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH---
Confidence 46788889998888889999999999999743222 2347899999999644 6689999999999998753
Q ss_pred CHHHHHHHHHCCCcHhHHHhhccC--hh-HHHHHHHHHHHHhcccCchHHHHh-ccchhhHhhhhcccCCCCCcHHHHHH
Q 041643 479 RSEHSKAIIEFDGVPPLMRLLKIS--DR-AQVHGLVFLCYLALSAGNSKALEQ-ARALNALEGAARTVLPQHPELRDLFA 554 (576)
Q Consensus 479 ~~~~~~~Iv~~ggi~~Lv~LL~~~--d~-vq~~A~~~L~~lal~~~~~~~l~~-~~~l~~Le~~~~~~~~q~~~~~~l~~ 554 (576)
+-...+.+.|.++.|+.||+.. |. ....-+.+...+..|...++.+.+ .++...|-.+-+. .+.+++....
T Consensus 567 --~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d---~N~~ir~~~d 641 (708)
T PF05804_consen 567 --ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHD---KNAEIRKVCD 641 (708)
T ss_pred --HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcC---CCHHHHHHHH
Confidence 5577888999999999999753 33 334444444567788888887765 5555555432111 1357788888
Q ss_pred HHHHHHHhhcC
Q 041643 555 QAIYHLTLYQA 565 (576)
Q Consensus 555 ~a~~~l~~y~~ 565 (576)
.++.++..|..
T Consensus 642 ~~Ldii~e~d~ 652 (708)
T PF05804_consen 642 NALDIIAEYDE 652 (708)
T ss_pred HHHHHHHHhCH
Confidence 88888877754
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.69 E-value=7.7e-15 Score=166.34 Aligned_cols=302 Identities=18% Similarity=0.161 Sum_probs=199.1
Q ss_pred HHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChh
Q 041643 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVK 261 (576)
Q Consensus 182 AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~ 261 (576)
+..-|.||+.+ +.+...+.+.|.|++|+++|++++ .+....+++.|.+||...+|+..|.+.|+|+.|++++.+++.+
T Consensus 269 ~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 269 AFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 44558999985 788899999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCC
Q 041643 262 VQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSR 341 (576)
Q Consensus 262 vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~ 341 (576)
++..+...|.||+. +++.|..+.+.|.||.|+.+|..++... + ++ ..-.+ +
T Consensus 347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~~~~----v----al----~iLy~--------------L-- 397 (708)
T PF05804_consen 347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPNFRE----V----AL----KILYN--------------L-- 397 (708)
T ss_pred HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCchHH----H----HH----HHHHH--------------h--
Confidence 99999999999997 5789999999999999999997542100 0 00 00000 0
Q ss_pred CCCCCCCcccccccCCHHHHHHH-HHHHHHHHHH-hhcCCcccc-----hhcccchHHHHhhhccCchhHHHHHHHHHHH
Q 041643 342 GGHGQHYNKKDRELETPEVKAKV-RIACAEALWK-LSKGCLLSL-----WSAESNAELRRSAFKTNSPAAKAVLDQLLRL 414 (576)
Q Consensus 342 ~~~g~~~~~~~~e~~d~~vk~~~-k~~Aa~ALw~-La~g~~~~I-----avae~~~~lrr~a~k~~s~a~~~vV~~Ll~l 414 (576)
+.|++.|... ..+|...|-. |-.++...+ ++.-.-.--+|.+ .. ....++++.|++.
T Consensus 398 -------------S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-ql--m~~g~gL~~L~~r 461 (708)
T PF05804_consen 398 -------------SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-QL--MCEGNGLQSLMKR 461 (708)
T ss_pred -------------ccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-HH--HHhcCcHHHHHHH
Confidence 0011111000 0112222222 112222211 0000000000000 00 0001223444432
Q ss_pred hhhcCChhhHHHHHHHHHHHhcCCchhhh---CcHHHHHHhhcC-CCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCC
Q 041643 415 IHEESDAMLQTPAIRSIGCLAKTFPAKEK---RMIGPLVALLSN-RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFD 490 (576)
Q Consensus 415 L~~~~~~~lq~~a~~aLgnLa~~~~~~~~---~~I~~LV~LL~~-~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~g 490 (576)
.-+.. +.+ -++.|-|++...+..+. ..|++|++++++ .+++..-|+..+|+|++.++ .+-.+.+.+.+
T Consensus 462 a~~~~-D~l---LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~----ld~~~ll~~~~ 533 (708)
T PF05804_consen 462 ALKTR-DPL---LLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD----LDWAQLLQEYN 533 (708)
T ss_pred HHhcc-cHH---HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC----cCHHHHHHhCC
Confidence 22222 111 12455566554422222 357888888865 47789999999999998754 24455666789
Q ss_pred CcHhHHHhhccC---hhHHHHHHHHHHHHhcccCchHHHHhccchhhHhhh
Q 041643 491 GVPPLMRLLKIS---DRAQVHGLVFLCYLALSAGNSKALEQARALNALEGA 538 (576)
Q Consensus 491 gi~~Lv~LL~~~---d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~ 538 (576)
-+|.|.++|..+ |.++.+++.+++.++....-...+++.|.++.|.++
T Consensus 534 llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~L 584 (708)
T PF05804_consen 534 LLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIEL 584 (708)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHH
Confidence 999999999765 238888999999998777778889999999998633
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.59 E-value=9e-14 Score=155.05 Aligned_cols=306 Identities=19% Similarity=0.214 Sum_probs=225.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC---CchHHHH
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD---QETVRFI 242 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~---~~~~~~i 242 (576)
+.|.+|..-+...+.+||.-|--++..+.+.+..+-+-||||.||.||++.+ .++|.+|++||.||.-. .+|+-+|
T Consensus 237 e~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 237 EVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccchhh
Confidence 3488999889999999999999999888888899999999999999999999 99999999999999963 3588899
Q ss_pred HHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643 243 VDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM 321 (576)
Q Consensus 243 v~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~ 321 (576)
.++++||.++.+|+. ++.++++..+.+|.||+++ +..+..++... +..|-..+-.. ++
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~a-l~tLt~~vI~P----~S--------------- 374 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSA-LSTLTDNVIIP----HS--------------- 374 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHH-HHHHHHhhccc----cc---------------
Confidence 999999999999986 8899999999999999987 46666666543 44444433111 11
Q ss_pred hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643 322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS 401 (576)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s 401 (576)
++... +. . +..++..+ -.+++++|.|++.-+.+ .-..+|+
T Consensus 375 ----------------gw~~~----~~--~-~~~~~~~v----f~n~tgcLRNlSs~~~e------aR~~mr~------- 414 (717)
T KOG1048|consen 375 ----------------GWEEE----PA--P-RKAEDSTV----FRNVTGCLRNLSSAGQE------AREQMRE------- 414 (717)
T ss_pred ----------------ccCCC----Cc--c-ccccccee----eehhhhhhccccchhHH------HHHHHhh-------
Confidence 01101 11 1 23333332 25789999999753211 1112222
Q ss_pred hhHHHHHHHHHHHhhh-----cCChhhHHHHHHHHHHHhcCCc-------------------------------------
Q 041643 402 PAAKAVLDQLLRLIHE-----ESDAMLQTPAIRSIGCLAKTFP------------------------------------- 439 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~-----~~~~~lq~~a~~aLgnLa~~~~------------------------------------- 439 (576)
|.|+|+.|+.++++ ..+..-.++|++.+-||.--..
T Consensus 415 --c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~ 492 (717)
T KOG1048|consen 415 --CDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKS 492 (717)
T ss_pred --ccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhc
Confidence 56889999887762 2235567889988888843100
Q ss_pred ----------hhh--h-C--------cHHHHHHhh-cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH-HHCCCcHhHH
Q 041643 440 ----------AKE--K-R--------MIGPLVALL-SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI-IEFDGVPPLM 496 (576)
Q Consensus 440 ----------~~~--~-~--------~I~~LV~LL-~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I-v~~ggi~~Lv 496 (576)
++. . | +|.+-..+| .+.+..+.+.+|.||-|++.+.+......+..+ ..+.|+++|+
T Consensus 493 ~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~ 572 (717)
T KOG1048|consen 493 DDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLV 572 (717)
T ss_pred hhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHH
Confidence 000 0 1 244434444 466888999999999999877766655556666 7899999999
Q ss_pred HhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh
Q 041643 497 RLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALE 536 (576)
Q Consensus 497 ~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le 536 (576)
.||+.+++ +-..++.+|.|++.+..|.+.|. ..+++-|.
T Consensus 573 ~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv 612 (717)
T KOG1048|consen 573 ELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLV 612 (717)
T ss_pred HHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHH
Confidence 99999988 77789999999999999999988 66677765
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.41 E-value=1.9e-11 Score=136.76 Aligned_cols=320 Identities=17% Similarity=0.206 Sum_probs=215.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcC--cccHHHHHhcCCHHHHHHHHcc-CCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 167 FISTIQMGQIKSRVDAANELASLARDN--NRNRKIIVEEGGILPLLKLLKE-AASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La~~~--~~~~~~I~~~GgIppLV~LL~~-g~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
+|++|..-+.+.+.+|+.+|.||.-.+ +.|+-.|.+.||||.|+++|+. ++ .+++++.+..|+||+++..-+..|+
T Consensus 280 Lv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D-~ev~e~iTg~LWNLSS~D~lK~~ii 358 (717)
T KOG1048|consen 280 LVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQD-DEVRELITGILWNLSSNDALKMLII 358 (717)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcc-hHHHHHHHHHHhcccchhHHHHHHH
Confidence 389999999999999999999998443 4599999999999999999997 56 9999999999999999855566555
Q ss_pred HcCCHHHHHHhhcCC--------------ChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccc--cCCC
Q 041643 244 DVLGVPIIVSVLGEA--------------PVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIA--LDLP 306 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~--------------~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~--~~~~ 306 (576)
.. +++.|.+-+-.+ ...+-.+++.+|.|+.+...+.|+.+.+. |.|..|+..+++-.- +-++
T Consensus 359 ~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~ 437 (717)
T KOG1048|consen 359 TS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDS 437 (717)
T ss_pred HH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccc
Confidence 44 677776655221 13566779999999999888999999887 889999999874311 0111
Q ss_pred cchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc---------
Q 041643 307 KPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK--------- 377 (576)
Q Consensus 307 ~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~--------- 377 (576)
| +..+-||...++.. +.. .|-| ......+.+...
T Consensus 438 K------~VENcvCilRNLSY-----------------------rl~-~Evp-------~~~~~~~~~~~~~~~~~~~~~ 480 (717)
T KOG1048|consen 438 K------SVENCVCILRNLSY-----------------------RLE-AEVP-------PKYRQVLANIARLPGVGPPAE 480 (717)
T ss_pred h------hHHHHHHHHhhcCc-----------------------hhh-hhcC-------HhhhhHhhcccccccCCCccc
Confidence 1 22223444333211 000 0000 001111111110
Q ss_pred -----CCc-----cc-----c---hhcccchH-HHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643 378 -----GCL-----LS-----L---WSAESNAE-LRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF 438 (576)
Q Consensus 378 -----g~~-----~~-----I---avae~~~~-lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~ 438 (576)
+.. .+ | ..+..+.+ +.+ .-+|..-+.+|.....+..++.+.++|-||+-..
T Consensus 481 ~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~----------p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 481 SVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWH----------PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccccchhhhchhcccccCCcccccCCCCceeeec----------HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 000 00 0 00000000 111 1345554556665555788999999999997532
Q ss_pred ch----------hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh----
Q 041643 439 PA----------KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR---- 504 (576)
Q Consensus 439 ~~----------~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~---- 504 (576)
.- +.+++.|+|++||++.+.+|.+.++.+|.|++.+- . .+.++..++++.||+.|..+..
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~-----r-nk~ligk~a~~~lv~~Lp~~~~~~~~ 624 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI-----R-NKELIGKYAIPDLVRCLPGSGPSTSL 624 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc-----h-hhhhhhcchHHHHHHhCcCCCCCcCc
Confidence 10 34578999999999999999999999999998642 3 3445558999999999974321
Q ss_pred ---HHHHHHHHHHHHh-cccCchHHHHhccchhhHhhhhcc
Q 041643 505 ---AQVHGLVFLCYLA-LSAGNSKALEQARALNALEGAART 541 (576)
Q Consensus 505 ---vq~~A~~~L~~la-l~~~~~~~l~~~~~l~~Le~~~~~ 541 (576)
+-...+.+|.++. .+..+...+.+.++++.|..+.+.
T Consensus 625 sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 625 SEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred hHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 3344666777775 677888999999999999844444
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.35 E-value=1.8e-11 Score=107.66 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=93.3
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 041643 199 IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD 277 (576)
Q Consensus 199 ~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~ 277 (576)
.+++.|+|++|+++|++++ +..++.|+++|.+++.+ ++.+..+++.|++|.|+++|++++..++..++|+|++|+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678999999999999998 99999999999999997 788889999999999999999999999999999999999988
Q ss_pred hHHHHHHHhcCCchhHHHhhcc
Q 041643 278 SIAQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 278 ~~~r~~i~~~g~I~~LV~LL~~ 299 (576)
+..++.+.+.|+++.|+++|..
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhc
Confidence 8888899999999999999954
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.28 E-value=7.7e-11 Score=103.66 Aligned_cols=110 Identities=26% Similarity=0.380 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIV 243 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv 243 (576)
..++..|+.++.+.|..|+.+|.+++..+++++..+++.|++|.|+++|.+++ +..+..|+++|+||+.+. +....++
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-HHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 34478899999999999999999999987889999999999999999999988 999999999999999976 5567788
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
+.|+++.|+++|.+++.++++.++|+|.+|+.
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999873
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.24 E-value=4.2e-10 Score=114.34 Aligned_cols=200 Identities=19% Similarity=0.181 Sum_probs=150.9
Q ss_pred HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 041643 199 IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDS 278 (576)
Q Consensus 199 ~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~ 278 (576)
.+.+.+.+..|+.+|+...+|..|+.|..+++|.+..+.++..|.+.|+++.+..+|.++++.+++.|.++|.|++.+ .
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~ 85 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-D 85 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-h
Confidence 346778899999999976559999999999999999999999999999999999999999999999999999999975 4
Q ss_pred HHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCH
Q 041643 279 IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETP 358 (576)
Q Consensus 279 ~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~ 358 (576)
+++..+.. .|+.+++.+.+.
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~---------------------------------------------------------- 105 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSS---------------------------------------------------------- 105 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcC----------------------------------------------------------
Confidence 56554432 233333322110
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643 359 EVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF 438 (576)
Q Consensus 359 ~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~ 438 (576)
..+..+|..+++.|.||+.+.
T Consensus 106 -----------------------------------------------------------~lns~~Q~agLrlL~nLtv~~ 126 (254)
T PF04826_consen 106 -----------------------------------------------------------PLNSEVQLAGLRLLTNLTVTN 126 (254)
T ss_pred -----------------------------------------------------------CCCCHHHHHHHHHHHccCCCc
Confidence 001233444445555554332
Q ss_pred chh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHHHHHHHH
Q 041643 439 PAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVHGLVFLC 514 (576)
Q Consensus 439 ~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~A~~~L~ 514 (576)
... =.+.||.|+++|..++..++..+.++|.|++++ ++..+.++.+++...++.|+...+. +-..++.+.-
T Consensus 127 ~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-----p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ 201 (254)
T PF04826_consen 127 DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-----PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFE 201 (254)
T ss_pred chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-----HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHH
Confidence 110 013589999999999999999999999999974 5788999999999999999987643 6677888888
Q ss_pred HHhcccCch
Q 041643 515 YLALSAGNS 523 (576)
Q Consensus 515 ~lal~~~~~ 523 (576)
+|..+....
T Consensus 202 ni~~~~~~~ 210 (254)
T PF04826_consen 202 NINENIKKE 210 (254)
T ss_pred HHHHhhCcc
Confidence 886554443
No 16
>PRK09687 putative lyase; Provisional
Probab=99.23 E-value=2.8e-10 Score=117.42 Aligned_cols=216 Identities=19% Similarity=0.123 Sum_probs=152.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG 247 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga 247 (576)
..++++.+...|..|+..|+.|-.. +.. ..-.+|.|..++.++.++.++..|+.+|+++....... ..-+
T Consensus 60 ~~ll~~~d~~vR~~A~~aLg~lg~~-~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a 129 (280)
T PRK09687 60 IELCSSKNPIERDIGADILSQLGMA-KRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKI 129 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCC-ccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHH
Confidence 4567788888888888888887532 111 12356777777444333888888989988886432211 1114
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccc
Q 041643 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTE 327 (576)
Q Consensus 248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~ 327 (576)
+..+...+.+.+..|+..++++|+.+.. + .+|++|+.+|..+
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~---------~ai~~L~~~L~d~--------------------------- 171 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALSVIND--E---------AAIPLLINLLKDP--------------------------- 171 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHhccCC--H---------HHHHHHHHHhcCC---------------------------
Confidence 5567777777788888888888876542 1 2578888888421
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHH
Q 041643 328 KSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAV 407 (576)
Q Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~v 407 (576)
|+. ++..|+.+|..+..++ ..+
T Consensus 172 -----------------------------~~~----VR~~A~~aLg~~~~~~-------------------------~~~ 193 (280)
T PRK09687 172 -----------------------------NGD----VRNWAAFALNSNKYDN-------------------------PDI 193 (280)
T ss_pred -----------------------------CHH----HHHHHHHHHhcCCCCC-------------------------HHH
Confidence 333 3467888887663322 135
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643 408 LDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAII 487 (576)
Q Consensus 408 V~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv 487 (576)
++.|+..|.+.+ +.++..|+.+||.+- +..+||+|++.|++++ +...|+.||+++.+.
T Consensus 194 ~~~L~~~L~D~~-~~VR~~A~~aLg~~~------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------- 251 (280)
T PRK09687 194 REAFVAMLQDKN-EEIRIEAIIGLALRK------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK------------- 251 (280)
T ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHccC------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-------------
Confidence 778888887765 889999999999873 3568999999998866 678999999999642
Q ss_pred HCCCcHhHHHhhc-cChh-HHHHHHHHH
Q 041643 488 EFDGVPPLMRLLK-ISDR-AQVHGLVFL 513 (576)
Q Consensus 488 ~~ggi~~Lv~LL~-~~d~-vq~~A~~~L 513 (576)
..+|.|.++++ +.|. ++..|.++|
T Consensus 252 --~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 --TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred --hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 27899999997 6777 888887765
No 17
>PRK09687 putative lyase; Provisional
Probab=99.22 E-value=5.4e-10 Score=115.32 Aligned_cols=232 Identities=15% Similarity=0.157 Sum_probs=166.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV 245 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~ 245 (576)
+++..|...+...|..|+..|..+-. ...++.+.+++++.+ +..+..|+++|+.|...... ..
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~-----~~ 89 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC-----QD 89 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc-----hH
Confidence 34788888899999999999886631 336788889998888 99999999999998753221 12
Q ss_pred CCHHHHHHh-hcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643 246 LGVPIIVSV-LGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE 324 (576)
Q Consensus 246 Gavp~LV~l-L~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~ 324 (576)
-+++.|..+ +++++..|+..|+.+|+++....+.. -+.++..|..
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---------~~~a~~~l~~------------------------- 135 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---------SPKIVEQSQI------------------------- 135 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---------chHHHHHHHH-------------------------
Confidence 367888877 57788899999999999986432110 1122222210
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643 325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA 404 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~ 404 (576)
....+|+.| +..+++||.++..
T Consensus 136 ---------------------------~~~D~~~~V----R~~a~~aLg~~~~--------------------------- 157 (280)
T PRK09687 136 ---------------------------TAFDKSTNV----RFAVAFALSVIND--------------------------- 157 (280)
T ss_pred ---------------------------HhhCCCHHH----HHHHHHHHhccCC---------------------------
Confidence 000124544 4678888865421
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
...++.|+.+|.+.+ +.+...|+.+||.+... ...++++|+.+|.+.+.+|+.+|+++|+++-..
T Consensus 158 ~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~---------- 222 (280)
T PRK09687 158 EAAIPLLINLLKDPN-GDVRNWAAFALNSNKYD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK---------- 222 (280)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHhcCCCC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh----------
Confidence 135789999998765 78999999999998321 235799999999999999999999999987431
Q ss_pred HHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcccCchHHHHhccchhhHhh
Q 041643 485 AIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEG 537 (576)
Q Consensus 485 ~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~ 537 (576)
..+++|++.|+.++ +...++.+|+.+ ++. ..+|.|+.
T Consensus 223 -----~av~~Li~~L~~~~-~~~~a~~ALg~i----g~~------~a~p~L~~ 259 (280)
T PRK09687 223 -----RVLSVLIKELKKGT-VGDLIIEAAGEL----GDK------TLLPVLDT 259 (280)
T ss_pred -----hHHHHHHHHHcCCc-hHHHHHHHHHhc----CCH------hHHHHHHH
Confidence 48899999998766 666788888777 332 45777763
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.14 E-value=4.3e-09 Score=106.98 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=149.5
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 165 WSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 165 ~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
..++..|+.. ++..++.|..+|.+.+.. +.+++.|.+.|||+.+..+|.+++ +..|+.|.+||.||+.+.+++..|-
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPN-PSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCC-hHHHHHHHHHHHhcCCChhhHHHHH
Confidence 4568889965 889999999999999875 789999999999999999999998 9999999999999999999988764
Q ss_pred HcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643 244 DVLGVPIIVSVLGEA--PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM 321 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~--~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~ 321 (576)
. -|+.+.+...+. +.++|..+..+|.||+-. .+++..++. .|+.|+.||.+|.
T Consensus 93 ~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~-~~~~~~l~~--~i~~ll~LL~~G~-------------------- 147 (254)
T PF04826_consen 93 M--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT-NDYHHMLAN--YIPDLLSLLSSGS-------------------- 147 (254)
T ss_pred H--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC-cchhhhHHh--hHHHHHHHHHcCC--------------------
Confidence 3 466666655443 578999999999999865 456667754 6999999997652
Q ss_pred hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643 322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS 401 (576)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s 401 (576)
. ..|..+.+.|++||.++ +..|..+..
T Consensus 148 ------------------------------------~----~~k~~vLk~L~nLS~np-----------~~~~~Ll~~-- 174 (254)
T PF04826_consen 148 ------------------------------------E----KTKVQVLKVLVNLSENP-----------DMTRELLSA-- 174 (254)
T ss_pred ------------------------------------h----HHHHHHHHHHHHhccCH-----------HHHHHHHhc--
Confidence 0 14578999999999764 333323321
Q ss_pred hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF 438 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~ 438 (576)
.++..++.++....+.++...++.-..||....
T Consensus 175 ----q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 175 ----QVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred ----cchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 356778888877655677888999999996644
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.09 E-value=4.3e-08 Score=109.28 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=207.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI 242 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i 242 (576)
+.-.+...|+..++..|..++..|.+++.+++.....+.+.+.++.++.+|.+++ ..+.+.|+.+|.+|+.++..-..+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCCchhHHHH
Confidence 3444577888999999999999999998876666677888999999999999998 999999999999999999888889
Q ss_pred HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643 243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322 (576)
Q Consensus 243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~ 322 (576)
++.+.++.|..++...++.++..+.+++.+++..+++....+...|.++.++..|.++
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d---------------------- 214 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD---------------------- 214 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc----------------------
Confidence 9999999999999887888999999999999999999999999999999999988542
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643 323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402 (576)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~ 402 (576)
|. -+|.+|...|..|+..+.+. ++-.
T Consensus 215 ----------------------------------Di----Lvqlnalell~~La~~~~g~-----------~yL~----- 240 (503)
T PF10508_consen 215 ----------------------------------DI----LVQLNALELLSELAETPHGL-----------QYLE----- 240 (503)
T ss_pred ----------------------------------cH----HHHHHHHHHHHHHHcChhHH-----------HHHH-----
Confidence 21 14578899999998743221 1111
Q ss_pred hHHHHHHHHHHHhhhcCC----hhhHHHHH-HHHHHHhcCCchhhh----CcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643 403 AAKAVLDQLLRLIHEESD----AMLQTPAI-RSIGCLAKTFPAKEK----RMIGPLVALLSNRNVDVATEAVIALSKFVS 473 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~~~----~~lq~~a~-~aLgnLa~~~~~~~~----~~I~~LV~LL~~~~~~V~~eAa~AL~nla~ 473 (576)
-.++++.|..++.+.+. ..+..|+. +..|++++..+..-. .++..|.+.+.+.+...+.-|.-+++.+++
T Consensus 241 -~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 241 -QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred -hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 12578888888765431 23455665 788999976443211 345556666778888888888889999986
Q ss_pred CCCCCCHHHHHHH-HHC-CCcHhHHHhh----ccChh-HHHHHHHHHHHHh
Q 041643 474 PDNFNRSEHSKAI-IEF-DGVPPLMRLL----KISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 474 ~~n~~~~~~~~~I-v~~-ggi~~Lv~LL----~~~d~-vq~~A~~~L~~la 517 (576)
. .+..+.+ ... +.++..+.-. .++.. ++..++.++.++.
T Consensus 320 t-----~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 320 T-----VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred C-----HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3 4667777 443 3445555443 33443 7888999888884
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1e-07 Score=98.07 Aligned_cols=302 Identities=16% Similarity=0.178 Sum_probs=204.0
Q ss_pred hcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHH
Q 041643 172 QMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIAT-DQETVRFIVDVLGVP 249 (576)
Q Consensus 172 ~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp 249 (576)
.+|+...-.++..+|-+|....+ -..+.-|..-+|++|.... +.+.-......+..-+. +.-||+.+++.|+.|
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 34455555677778887765433 4557788999999996442 14444444444544444 667899999999999
Q ss_pred HHHHhh-cCCChhHHHHHHHHHHHHhcCCh---------HHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643 250 IIVSVL-GEAPVKVQVAVANLVARMAELDS---------IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV 319 (576)
Q Consensus 250 ~LV~lL-~s~~~~vq~~Aa~aL~~LA~~~~---------~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v 319 (576)
.+.+.| +.|..++.....|++..|-.+++ +....|+++|+...|++.|..+.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~------------------ 254 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI------------------ 254 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC------------------
Confidence 999776 55667788889999998876432 23346777888888888885431
Q ss_pred hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643 320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT 399 (576)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~ 399 (576)
||.+ ...+..+|..|+-.+.-.-.|+|
T Consensus 255 -------------------------------------dp~~----L~~l~~tl~~lAVr~E~C~~I~e------------ 281 (461)
T KOG4199|consen 255 -------------------------------------DPDS----LVSLSTTLKALAVRDEICKSIAE------------ 281 (461)
T ss_pred -------------------------------------CccH----HHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 2222 24677888888754321112233
Q ss_pred CchhHHHHHHHHHHHhhhcCChhhH---HHHHHHHHHHhcCCch----hhhCcHHHHHHhh--cCCCHHHHHHHHHHHHh
Q 041643 400 NSPAAKAVLDQLLRLIHEESDAMLQ---TPAIRSIGCLAKTFPA----KEKRMIGPLVALL--SNRNVDVATEAVIALSK 470 (576)
Q Consensus 400 ~s~a~~~vV~~Ll~lL~~~~~~~lq---~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL--~~~~~~V~~eAa~AL~n 470 (576)
.|+++.|++++.+....... ..|+..|..||..... .+.|+.+.++.++ ...++.|-++++.+|+-
T Consensus 282 -----~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~ 356 (461)
T KOG4199|consen 282 -----SGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI 356 (461)
T ss_pred -----ccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 25688899999874423333 4567777888865443 3568899999987 35678888888888887
Q ss_pred hcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh---HHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCC
Q 041643 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR---AQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHP 547 (576)
Q Consensus 471 la~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~---vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~ 547 (576)
++-- .++|...+++.|+...-++-|+.... +|++|++.+.|++.+..+..++-=+.+++.|-...+. -|+
T Consensus 357 l~LR----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~---~h~ 429 (461)
T KOG4199|consen 357 LCLR----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA---NHE 429 (461)
T ss_pred HHhc----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh---cCc
Confidence 7642 47999999999999999999985543 8999999999998766655444444456666522222 256
Q ss_pred cHHHHHHHHHHHH
Q 041643 548 ELRDLFAQAIYHL 560 (576)
Q Consensus 548 ~~~~l~~~a~~~l 560 (576)
+-++....|+.-|
T Consensus 430 tce~~akaALRDL 442 (461)
T KOG4199|consen 430 TCEAAAKAALRDL 442 (461)
T ss_pred cHHHHHHHHHHhc
Confidence 6666666665543
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.93 E-value=1.1e-07 Score=113.06 Aligned_cols=241 Identities=19% Similarity=0.150 Sum_probs=156.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD 244 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~ 244 (576)
-.++..|+..++..|..|+..|..+. ..+.+|.|+++|++.+ +.++..|+.+|..+.....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~------- 684 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP------- 684 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC-------
Confidence 34567778888888888888877553 2346888899887777 8888888888887753211
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643 245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE 324 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~ 324 (576)
..+.|...|.++++.++..|+.+|..+...+ ...|+..|..+. + .+...++..+.....
T Consensus 685 --~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d----~--~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 --PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPD----H--RVRIEAVRALVSVDD- 743 (897)
T ss_pred --chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCC----H--HHHHHHHHHHhcccC-
Confidence 2357778888888888888888887765222 234566665331 1 111112222111100
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643 325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA 404 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~ 404 (576)
.+.+......+|++| +..++.+|..+..+..
T Consensus 744 ---------------------~~~l~~~l~D~~~~V----R~~aa~aL~~~~~~~~------------------------ 774 (897)
T PRK13800 744 ---------------------VESVAGAATDENREV----RIAVAKGLATLGAGGA------------------------ 774 (897)
T ss_pred ---------------------cHHHHHHhcCCCHHH----HHHHHHHHHHhccccc------------------------
Confidence 011112223345554 4677888877743311
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
..++.|++++.+.+ +.++..|+.+||++... ...+++|+..|++.+..|+..|+++|+.+.+.
T Consensus 775 -~~~~~L~~ll~D~d-~~VR~aA~~aLg~~g~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------- 837 (897)
T PRK13800 775 -PAGDAVRALTGDPD-PLVRAAALAALAELGCP-----PDDVAAATAALRASAWQVRQGAARALAGAAAD---------- 837 (897)
T ss_pred -hhHHHHHHHhcCCC-HHHHHHHHHHHHhcCCc-----chhHHHHHHHhcCCChHHHHHHHHHHHhcccc----------
Confidence 12566778887765 88888899999888421 23457788889888889999999999887532
Q ss_pred HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643 485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYL 516 (576)
Q Consensus 485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l 516 (576)
..+++|+.+|+..+. |+..|+.+|..+
T Consensus 838 -----~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 838 -----VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred -----chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 245888999987776 888888888765
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.86 E-value=2.3e-07 Score=98.02 Aligned_cols=295 Identities=15% Similarity=0.129 Sum_probs=186.2
Q ss_pred HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcC---C----ChhHHHHHHH
Q 041643 197 RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGE---A----PVKVQVAVAN 268 (576)
Q Consensus 197 ~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s---~----~~~vq~~Aa~ 268 (576)
++.-+++|.+.+|.++..+++ .++-+..-+||+|++. +.|+|.++.+.||-..++++|+. . +++.-..+.+
T Consensus 80 ~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g 158 (604)
T KOG4500|consen 80 RNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFG 158 (604)
T ss_pred HHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHH
Confidence 344456889999999999987 8899999999999999 57899999999998888888853 1 1344455677
Q ss_pred HHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhh------HHHHHHhhhccccccccccCCCCCCCCCC
Q 041643 269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT------TIHSLVQMKKEMTEKSTNVTNNSDGSSRG 342 (576)
Q Consensus 269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~------si~~~v~~~~~~~~~~~~~~~~~~~~~~~ 342 (576)
.|.|-.-++.+.|..+.+.|+++.|+.++.-+- +.+....+ .+-+.++-.- ...+ ...+
T Consensus 159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~----qNaa~~e~ll~~f~nlls~~~e~~---~~~~--------~d~s 223 (604)
T KOG4500|consen 159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDW----QNAALTEKLLAPFFNLLSFVCEML---YPFC--------KDCS 223 (604)
T ss_pred HHHHhhCCcHHHHHHHHhcccHHHHHHHhhccc----ccHHHHHHHHhccccHHHHHHHhh---hhhh--------ccch
Confidence 788877788899999999999999999986431 10000000 0111111000 0000 0000
Q ss_pred CCCCC-CcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCCh
Q 041643 343 GHGQH-YNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA 421 (576)
Q Consensus 343 ~~g~~-~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~ 421 (576)
+. .+.+.. -..++....+++-.-|.+.+.++.-....++ .|.++-++.++++-++.
T Consensus 224 ---l~~~l~~ll---~~~v~~d~~eM~feila~~aend~Vkl~la~-----------------~gl~e~~~~lv~~~k~~ 280 (604)
T KOG4500|consen 224 ---LVFMLLQLL---PSMVREDIDEMIFEILAKAAENDLVKLSLAQ-----------------NGLLEDSIDLVRNMKDF 280 (604)
T ss_pred ---HHHHHHHHH---HHhhccchhhHHHHHHHHHhcCcceeeehhh-----------------cchHHHHHHHHHhcccc
Confidence 00 000000 0000011235677777777765432211121 23555566665542111
Q ss_pred hhHHHHHH---HHHHH---hcCCchh------hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC
Q 041643 422 MLQTPAIR---SIGCL---AKTFPAK------EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEF 489 (576)
Q Consensus 422 ~lq~~a~~---aLgnL---a~~~~~~------~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ 489 (576)
.-.+-.+. .++.+ --++.+. +.++...++.-+++.+.+.+..++.||+||+-. ++|+..+++.
T Consensus 281 t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-----D~~ci~~v~~ 355 (604)
T KOG4500|consen 281 TKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-----DDICIQLVQK 355 (604)
T ss_pred cchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-----chHHHHHHHH
Confidence 11111111 11111 0011111 112677888888999999999999999999954 4889999999
Q ss_pred CCcHhHHHhhcc-----Chh-HHHHHHHHHHHHhcccCchHHHHhccchhhH
Q 041643 490 DGVPPLMRLLKI-----SDR-AQVHGLVFLCYLALSAGNSKALEQARALNAL 535 (576)
Q Consensus 490 ggi~~Lv~LL~~-----~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~L 535 (576)
|-+..|+.+|.. |+. .|..++.+|.++...++|...+.++|+...+
T Consensus 356 ~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaI 407 (604)
T KOG4500|consen 356 DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAI 407 (604)
T ss_pred HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHH
Confidence 999999999853 223 5778999999999999999999999988764
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=2.8e-06 Score=87.69 Aligned_cols=336 Identities=14% Similarity=0.159 Sum_probs=200.7
Q ss_pred hccccccHHHHHHHHHhhhcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHH-HHHHHHHHhhc
Q 041643 114 SITTNADFKKVFSLLESSIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVD-AANELASLARD 192 (576)
Q Consensus 114 ~i~~~~~l~~l~~~L~~~~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~-AA~~L~~La~~ 192 (576)
.+.|..+-+..+.++++.-++++-++.-+.-+ ...+-|. |.+.+.++-.-+. +|.+ -..-|-+|+..
T Consensus 22 ~m~peea~~e~I~qfe~qgi~l~nIik~~sv~-~~~~qp~------i~~~~~~i~e~i~-----~~~~E~s~ll~~l~d~ 89 (461)
T KOG4199|consen 22 SMTPSEAKEETIKQFEAQGINLANIIKDLSVN-PQTGQPV------INETVDKIKEHIG-----QKLEETTELLEQLADE 89 (461)
T ss_pred hcCccccchHHHHHHHhccCcccccccccCCC-CCCCCcc------HHHhHHHHHHHHH-----hhhHHHHHHHHHHHHH
Confidence 34577888888999988777776554433211 1111122 3333322211111 2221 12223333311
Q ss_pred ---CcccHHHHHhcCCHHHHHHHHcc---CCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhc--CCChhHHH
Q 041643 193 ---NNRNRKIIVEEGGILPLLKLLKE---AASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLG--EAPVKVQV 264 (576)
Q Consensus 193 ---~~~~~~~I~~~GgIppLV~LL~~---g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~--s~~~~vq~ 264 (576)
+...|..-...|+.|.++-+++. ++ ...-+.+..||..+. +.+..+.++-|...++++|. +.+.++--
T Consensus 90 ck~~~A~r~la~~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt---~~qpdl~da~g~~vvv~lL~~~~~~~dlt~ 165 (461)
T KOG4199|consen 90 CKKSLAHRVLAGKNGAHDALITLLELAESPN-ESVLKKSLEAINSLT---HKQPDLFDAEAMAVVLKLLALKVESEEVTL 165 (461)
T ss_pred HhhhHHHHHHhccCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhh---cCCcchhccccHHHHHHHHhcccchHHHHH
Confidence 11122233456777777776653 33 445566666665554 45667888999999999994 34556655
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCC
Q 041643 265 AVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGH 344 (576)
Q Consensus 265 ~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (576)
.....+..-+-.++.+|+.|.+.++.+.+.+.|..+.
T Consensus 166 ~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g------------------------------------------- 202 (461)
T KOG4199|consen 166 LTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG------------------------------------------- 202 (461)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC-------------------------------------------
Confidence 5555566556667899999999999888877664220
Q ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc---hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCCh
Q 041643 345 GQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL---WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA 421 (576)
Q Consensus 345 g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I---avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~ 421 (576)
+ +.-| ..+.||+..|...++-++ .+.++ -|. . +-.++..-|++.+.-.-+|
T Consensus 203 ------k-----~~~V-----Rel~~a~r~l~~dDDiRV~fg~ah~h---Ar~-i------a~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 203 ------K-----TRTV-----RELYDAIRALLTDDDIRVVFGQAHGH---ART-I------AKEGILTALTEALQAGIDP 256 (461)
T ss_pred ------c-----cHHH-----HHHHHHHHHhcCCCceeeecchhhHH---HHH-H------HHhhhHHHHHHHHHccCCc
Confidence 0 1111 357788888876543332 11111 111 1 1112344455555544457
Q ss_pred hhHHHHHHHHHHHhcCCch----hhhCcHHHHHHhhcC-CCHHHH---HHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcH
Q 041643 422 MLQTPAIRSIGCLAKTFPA----KEKRMIGPLVALLSN-RNVDVA---TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVP 493 (576)
Q Consensus 422 ~lq~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL~~-~~~~V~---~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~ 493 (576)
+++.....+|+.||-..+- .+.|++..|++++++ ++..++ +++.-.|..+|.+ +..+..|++.||.+
T Consensus 257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-----DsvKs~IV~~gg~~ 331 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-----DSVKSTIVEKGGLD 331 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-----CchHHHHHHhcChH
Confidence 8888888999999753221 356999999999976 444444 6677788888853 36688999999999
Q ss_pred hHHHhhc-cC-hh-HHHHHHHHHHHHhcccCc-hHHHHhccchhhH-hhhh
Q 041643 494 PLMRLLK-IS-DR-AQVHGLVFLCYLALSAGN-SKALEQARALNAL-EGAA 539 (576)
Q Consensus 494 ~Lv~LL~-~~-d~-vq~~A~~~L~~lal~~~~-~~~l~~~~~l~~L-e~~~ 539 (576)
.+++|+. +. ++ +-..++.++|.+++..|+ +..+.+.|+-..- ++++
T Consensus 332 ~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 332 KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence 9999874 44 44 444566677888887776 4666777776653 4665
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.80 E-value=3.4e-06 Score=94.20 Aligned_cols=293 Identities=15% Similarity=0.196 Sum_probs=203.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVL 246 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~G 246 (576)
+..|..++.+....|+..|..+++. +...+.+++.+.++.|.+++...+ +..+...-..+.++++. ++....+++.|
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 6788999999999999999999986 567778889999999999998877 88999999999999985 55667788899
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643 247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT 326 (576)
Q Consensus 247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~ 326 (576)
.++.+++.|.+.+.-+|..+...|..||. .+.....+.+.|+++.|+.++.... ++++
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~--~dp~------------------- 260 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE--EDPR------------------- 260 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc--cCCc-------------------
Confidence 99999999999888899999999999998 6788889999999999999996432 1110
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHH
Q 041643 327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKA 406 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~ 406 (576)
+ + ++-. | .......+++.-.+.. .+. ..+.
T Consensus 261 ------------~--~--~~~l---------~--------g~~~f~g~la~~~~~~--------v~~---------~~p~ 290 (503)
T PF10508_consen 261 ------------L--S--SLLL---------P--------GRMKFFGNLARVSPQE--------VLE---------LYPA 290 (503)
T ss_pred ------------c--c--chhh---------h--------hHHHHHHHHHhcChHH--------HHH---------HHHH
Confidence 0 0 0000 0 0112223333211110 111 1135
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhh----------CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643 407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEK----------RMIGPLVALLSNRNVDVATEAVIALSKFVSPDN 476 (576)
Q Consensus 407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~----------~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n 476 (576)
+++.|..++.+.| +..+..|+.++|+++.+....+. .++..+-...+++..+++..+-.|++++-..++
T Consensus 291 ~~~~l~~~~~s~d-~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 291 FLERLFSMLESQD-PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHhCCCC-hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 6677777777765 78888999999999976543211 234555555678888999999999999943332
Q ss_pred CCCHHHHHHHH-------HCCCcH-hHHHhhccC-hhHHHHHHHHHHHHhcccCchHHHH-hccchhhH
Q 041643 477 FNRSEHSKAII-------EFDGVP-PLMRLLKIS-DRAQVHGLVFLCYLALSAGNSKALE-QARALNAL 535 (576)
Q Consensus 477 ~~~~~~~~~Iv-------~~ggi~-~Lv~LL~~~-d~vq~~A~~~L~~lal~~~~~~~l~-~~~~l~~L 535 (576)
....+..-.+. ..+... .++.+++.. .+++..++.+|..++.+.--...+. ..|.++.|
T Consensus 370 ~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~l 438 (503)
T PF10508_consen 370 DRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYL 438 (503)
T ss_pred CCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhh
Confidence 21223222222 233333 566777665 4488889998888876654444444 45555555
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.74 E-value=6.2e-07 Score=106.58 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=159.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
+..++..|...+...|..|+.+|..+... . ...+.|...|++.+ +.++..|+.+|..+..
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~-~---------~~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~--------- 713 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVEV-L---------PPAPALRDHLGSPD-PVVRAAALDVLRALRA--------- 713 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhc-c---------CchHHHHHHhcCCC-HHHHHHHHHHHHhhcc---------
Confidence 34457888888999999999999877432 1 12468889998877 9999999999988752
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~ 323 (576)
|....|+..|++.+..++..|+.+|+.+- ..+.|..+|..+. ..+.......+.....
T Consensus 714 --~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~------~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 714 --GDAALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAATDEN------REVRIAVAKGLATLGA 771 (897)
T ss_pred --CCHHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhcCCC------HHHHHHHHHHHHHhcc
Confidence 22456788899999999999999988752 1234556664331 0110111111111111
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643 324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA 403 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a 403 (576)
. ...+.+.+......+|+.|| ..|+.+|..+....
T Consensus 772 ~-----------------~~~~~~~L~~ll~D~d~~VR----~aA~~aLg~~g~~~------------------------ 806 (897)
T PRK13800 772 G-----------------GAPAGDAVRALTGDPDPLVR----AAALAALAELGCPP------------------------ 806 (897)
T ss_pred c-----------------cchhHHHHHHHhcCCCHHHH----HHHHHHHHhcCCcc------------------------
Confidence 0 00001111122223466654 67888887763210
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS 483 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~ 483 (576)
.++..|+..|.+.+ +.+...|+.+||.+. ....+++|+.+|++.+..|+++|+++|+++..+ ++
T Consensus 807 --~~~~~l~~aL~d~d-~~VR~~Aa~aL~~l~------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-----~~-- 870 (897)
T PRK13800 807 --DDVAAATAALRASA-WQVRQGAARALAGAA------ADVAVPALVEALTDPHLDVRKAAVLALTRWPGD-----PA-- 870 (897)
T ss_pred --hhHHHHHHHhcCCC-hHHHHHHHHHHHhcc------ccchHHHHHHHhcCCCHHHHHHHHHHHhccCCC-----HH--
Confidence 13355677777654 789999999999874 234689999999999999999999999987311 12
Q ss_pred HHHHHCCCcHhHHHhhccChh-HHHHHHHHHH
Q 041643 484 KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLC 514 (576)
Q Consensus 484 ~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~ 514 (576)
..+.|.++|+..|. |+..|..+|.
T Consensus 871 -------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 -------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred -------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 35667788887777 8888888763
No 26
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=4e-07 Score=106.75 Aligned_cols=264 Identities=18% Similarity=0.180 Sum_probs=182.2
Q ss_pred HHHH-HHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-----------CChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643 177 KSRV-DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-----------ASPDAQTAAANALFNIATD-QETVRFIV 243 (576)
Q Consensus 177 e~k~-~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-----------~~~~~q~~AA~AL~nLa~~-~~~~~~iv 243 (576)
+-+. .|.++|.-++- ++++|...-+-||+..+-+||..+ -+...+..|+.||+||+-. ..|+..+-
T Consensus 312 ~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 312 EHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred chhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3344 45555666655 589999999999988888877421 1134578999999999984 45666655
Q ss_pred -HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643 244 -DVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM 321 (576)
Q Consensus 244 -~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~ 321 (576)
.-|.+..+|.-|.+.+++++...|..|.||+=. +...+..+.+.|-+-.|+..--. .
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~---------------------~ 449 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR---------------------N 449 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH---------------------h
Confidence 578899999999999999999999999999843 44566666666766666553210 0
Q ss_pred hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643 322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS 401 (576)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s 401 (576)
. +|+ - + ....-|||||+....+|-+ ++ +
T Consensus 450 ~------------------------------kEs---T----L-KavLSALWNLSAHcteNKA------~i----C---- 477 (2195)
T KOG2122|consen 450 K------------------------------KES---T----L-KAVLSALWNLSAHCTENKA------EI----C---- 477 (2195)
T ss_pred c------------------------------ccc---h----H-HHHHHHHhhhhhcccccch------hh----h----
Confidence 0 000 0 1 2567899999987776621 11 1
Q ss_pred hhHHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHHhcC----Cch----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHh
Q 041643 402 PAAKAVLDQLLRLIHEES---DAMLQTPAIRSIGCLAKT----FPA----KEKRMIGPLVALLSNRNVDVATEAVIALSK 470 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~aLgnLa~~----~~~----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~n 470 (576)
+..|.+..|+..|.... .-.+.+.|-+.|-|.... .+- ++.+.|..|+.+|++.+.-|.-+++.+|+|
T Consensus 478 -aVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN 556 (2195)
T KOG2122|consen 478 -AVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN 556 (2195)
T ss_pred -cccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence 12244556666665331 123445555566555432 111 345678999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS 519 (576)
Q Consensus 471 la~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~ 519 (576)
+..- +++.+++|.|.|+++.|..|+++..- +-.-++.+|.|+..+
T Consensus 557 LSAR----~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 557 LSAR----SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhcC----CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 9753 37889999999999999999998766 555566677788433
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=4.2e-07 Score=106.64 Aligned_cols=224 Identities=16% Similarity=0.149 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHH-hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc--hHHHHHHcCCHHHHHH
Q 041643 177 KSRVDAANELASLARDNNRNRKIIV-EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE--TVRFIVDVLGVPIIVS 253 (576)
Q Consensus 177 e~k~~AA~~L~~La~~~~~~~~~I~-~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~--~~~~iv~~Gavp~LV~ 253 (576)
..|..|+.+|.||.-.+..|+..+. ..|.+..+|..|.+.. ++.+.--|..|.||+...| .++.+-+.|-|..|+.
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 4567899999999887666776654 6677999999999988 7888888899999999654 4667778999999998
Q ss_pred hh-cCCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccc
Q 041643 254 VL-GEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTN 331 (576)
Q Consensus 254 lL-~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~ 331 (576)
.- +...+........||+||+.++.+++..|..- |++..||.+|.-+. .++
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~---qs~------------------------ 497 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEG---QSN------------------------ 497 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccC---Ccc------------------------
Confidence 74 55555556678889999999999999888775 99999999997541 010
Q ss_pred cCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhccc-chHHHHhhhccCchhHHHHHHH
Q 041643 332 VTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAES-NAELRRSAFKTNSPAAKAVLDQ 410 (576)
Q Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~-~~~lrr~a~k~~s~a~~~vV~~ 410 (576)
-..+..++|||-. |.+. -|++-|. ...|||+ ..+..
T Consensus 498 ----tLaIIEsaGGILR-------------------------NVSS----~IAt~E~yRQILR~~----------NCLq~ 534 (2195)
T KOG2122|consen 498 ----TLAIIESAGGILR-------------------------NVSS----LIATCEDYRQILRRH----------NCLQT 534 (2195)
T ss_pred ----hhhhhhcCccHHH-------------------------HHHh----HhhccchHHHHHHHh----------hHHHH
Confidence 0001223344442 2211 0222221 2246664 45778
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 411 LLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 411 Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
|++.|+++. -.+..+++++|+||.-..+. ++.|+|+-|-+|+.+++-.+.+-++.||.|+-
T Consensus 535 LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 535 LLQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred HHHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 889998875 78889999999999654332 35588999999999999999999999999986
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.59 E-value=3.6e-06 Score=91.34 Aligned_cols=268 Identities=16% Similarity=0.147 Sum_probs=167.9
Q ss_pred hHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCC
Q 041643 159 PILAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQ 236 (576)
Q Consensus 159 ~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~ 236 (576)
....+...+...|+++ +.+.+.-++.+|..|.+. +++|..+.+.+|+++|+.+|+... +...|.++.-+++-|+-++
T Consensus 140 ~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~ 218 (429)
T cd00256 140 DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP 218 (429)
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccH
Confidence 3344443356777776 466777888899999886 789999999999999999998754 3688999999999999988
Q ss_pred chHHHHHHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCC------hHHHHHHHhcCCchhHHHhhccccccCCCcch
Q 041643 237 ETVRFIVDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELD------SIAQEEFVRENVTRSLISLLCMDIALDLPKPE 309 (576)
Q Consensus 237 ~~~~~iv~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~------~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i 309 (576)
+....+.+.|.||.|+++++. ..+.+...+..++.|+.... ..+...+...| +++++..|...... +. .+
T Consensus 219 ~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~-De-dL 295 (429)
T cd00256 219 HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYD-DE-DL 295 (429)
T ss_pred HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCC-cH-HH
Confidence 877888889999999999976 45888888999999999642 12334455555 46677777644210 00 01
Q ss_pred hh-hhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc--chhc
Q 041643 310 SA-KTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS--LWSA 386 (576)
Q Consensus 310 ~~-~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~--Iava 386 (576)
.. -..++..+.-... .....|.- +.+++. -.--| ++... .-=.
T Consensus 296 ~edl~~L~e~L~~~~k---------------------------~ltsfD~Y-~~El~s--g~L~W----Sp~H~se~FW~ 341 (429)
T cd00256 296 TDDLKFLTEELKNSVQ---------------------------DLSSFDEY-KSELRS--GRLHW----SPVHKSEKFWR 341 (429)
T ss_pred HHHHHHHHHHHHHHHH---------------------------HcCCHHHH-HHHHhc--CCccC----CCCCCCchHHH
Confidence 10 0011111100000 00000100 000000 00001 11110 0000
Q ss_pred ccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHH
Q 041643 387 ESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVA 461 (576)
Q Consensus 387 e~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~ 461 (576)
|. .+ .|+.+. -.++..|+.+|..++++....-|+-=||.+++..|.. +-|+=..+-+||.+.+++|+
T Consensus 342 EN---~~--kf~~~~---~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr 413 (429)
T cd00256 342 EN---AD--RLNEKN---YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVR 413 (429)
T ss_pred HH---HH--HHHhcc---hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 00 00 021111 1467889999976666777778888899999987642 22444667889999999999
Q ss_pred HHHHHHHHhhc
Q 041643 462 TEAVIALSKFV 472 (576)
Q Consensus 462 ~eAa~AL~nla 472 (576)
.+|-.|+.++-
T Consensus 414 ~eAL~avQklm 424 (429)
T cd00256 414 YEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.5e-05 Score=83.78 Aligned_cols=345 Identities=15% Similarity=0.147 Sum_probs=215.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
|.-+|..|...+.+.-.--..-|.-|+-. ++|+....+.|.|..|++|..... ++.......-|+|++-++..+..||
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccccHHHh
Confidence 33345555554433333322334455554 678899999999999999999988 9999999999999999999999999
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~ 323 (576)
..|-+|.|+.+|.+.+- ..-|...+..++. +...+..++...+|+.|+..+-+++ .++--....++.-.++.++
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~---~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGT---GSEVDLALIALCINLCLNK 457 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcC---CceecHHHHHHHHHHHhcc
Confidence 99999999999977643 2446666777775 4688999999999999999776654 2210000112211122222
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcc-cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643 324 EMTEKSTNVTNNSDGSSRGGHGQHYNK-KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~ 402 (576)
-. .+.+. .+.|+..+. +..-+.|+ .-...+.+++.... ..+. -|.
T Consensus 458 RN----------aQlvc-eGqgL~~LM~ra~k~~D~--------lLmK~vRniSqHeg----------~tqn-~Fi---- 503 (791)
T KOG1222|consen 458 RN----------AQLVC-EGQGLDLLMERAIKSRDL--------LLMKVVRNISQHEG----------ATQN-MFI---- 503 (791)
T ss_pred cc----------ceEEe-cCcchHHHHHHHhcccch--------HHHHHHHHhhhccc----------hHHH-HHH----
Confidence 11 11111 123444321 11222343 23455666664311 1111 121
Q ss_pred hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcC--CCHHHHHHHHHHHHhhcCCC
Q 041643 403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSN--RNVDVATEAVIALSKFVSPD 475 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~--~~~~V~~eAa~AL~nla~~~ 475 (576)
.-|.-|..++++.+++..-..|+++++||.-+.-+ .+.+.||-+-..|.. .+.+.+-+...+++-++++.
T Consensus 504 ---dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~ 580 (791)
T KOG1222|consen 504 ---DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL 580 (791)
T ss_pred ---HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh
Confidence 34677888888777678888999999999754332 234678888888864 46678889999999998764
Q ss_pred CCCCHHHHHHHHHCCCcHhHHHhhccC---hh--HHHH-HHHHHHHHhcccCchHHHHhccchhh-HhhhhcccCCCCCc
Q 041643 476 NFNRSEHSKAIIEFDGVPPLMRLLKIS---DR--AQVH-GLVFLCYLALSAGNSKALEQARALNA-LEGAARTVLPQHPE 548 (576)
Q Consensus 476 n~~~~~~~~~Iv~~ggi~~Lv~LL~~~---d~--vq~~-A~~~L~~lal~~~~~~~l~~~~~l~~-Le~~~~~~~~q~~~ 548 (576)
.-.+.+..+|.|+.|++||+.. |+ +|.- .+. -+..|--..+-+.+.-.+++ |-.+-+- -+.+
T Consensus 581 -----~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~---Q~l~He~tr~~miket~~~AylIDLMHD---kN~e 649 (791)
T KOG1222|consen 581 -----DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFL---QFLKHELTRRLMIKETALGAYLIDLMHD---KNAE 649 (791)
T ss_pred -----HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHH---HHHHHHHHHHHHHhhccchHHHHHHHhc---ccHH
Confidence 3356777899999999999853 33 4542 222 23345444455555554544 2211100 0135
Q ss_pred HHHHHHHHHHHHHhhc
Q 041643 549 LRDLFAQAIYHLTLYQ 564 (576)
Q Consensus 549 ~~~l~~~a~~~l~~y~ 564 (576)
++++..-++.|+..|-
T Consensus 650 iRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 650 IRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666777777776664
No 30
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.55 E-value=7.9e-08 Score=70.04 Aligned_cols=41 Identities=49% Similarity=0.690 Sum_probs=38.3
Q ss_pred CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643 193 NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 193 ~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~ 234 (576)
|+++++.|++.|+||+|++||++++ ++.|++|+|||+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPD-PEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSS-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 4689999999999999999999888 9999999999999974
No 31
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.41 E-value=1.2e-06 Score=79.86 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643 161 LAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV 239 (576)
Q Consensus 161 ~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~ 239 (576)
+.++..+|.-.++- +.|+|++-.+.|.|.|-+ +-|...+.+..++.-+|.-|.+.+ ....+-+..+|+|++-++.|.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccChHHH
Confidence 45666677766654 789999999999999986 889999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297 (576)
Q Consensus 240 ~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL 297 (576)
+.|+++|++|.++..|+++++.+...++.++..|....-..|+.+.. |+.|+.+
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 99999999999999999999999999999999999766666776654 4455544
No 32
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.32 E-value=7.3e-07 Score=64.91 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=38.4
Q ss_pred CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643 235 DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 235 ~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
+++++..++++|+||+|+++|++++.++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999983
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.31 E-value=2.9e-05 Score=81.44 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=145.7
Q ss_pred cCCHHHHHHHHHHHHHHhhcCcccHHHHHh------cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643 173 MGQIKSRVDAANELASLARDNNRNRKIIVE------EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL 246 (576)
Q Consensus 173 ~G~~e~k~~AA~~L~~La~~~~~~~~~I~~------~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G 246 (576)
+.+.+........+..+..+++...+.+.+ ..-..||+++|.+++ .-.+..|+..|..|....+.+..-...+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 456777778888888888876655555544 125899999999888 9999999999999998665555444467
Q ss_pred CHHHHHHhhcC----CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643 247 GVPIIVSVLGE----APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322 (576)
Q Consensus 247 avp~LV~lL~s----~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~ 322 (576)
.++.+++.|++ .+.+++..++.+|.+|.. .+.+|..|.+.|++++|+.+|+... ..
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~--~~----------------- 206 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQA--TN----------------- 206 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhc--cc-----------------
Confidence 88999999875 345677889999999995 5899999999999999999995210 00
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643 323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402 (576)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~ 402 (576)
+.....+++=.+..++|-|+..... + ..+.+
T Consensus 207 ----------------------------------~~~~~~Ql~Y~~ll~lWlLSF~~~~----~---~~~~~-------- 237 (312)
T PF03224_consen 207 ----------------------------------SNSSGIQLQYQALLCLWLLSFEPEI----A---EELNK-------- 237 (312)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHTTSHHH----H---HHHHT--------
T ss_pred ----------------------------------CCCCchhHHHHHHHHHHHHhcCHHH----H---HHHhc--------
Confidence 0000113445799999999987421 1 11211
Q ss_pred hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch--hhh---CcHHHHHHhhcC---CCHHHHHHH
Q 041643 403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA--KEK---RMIGPLVALLSN---RNVDVATEA 464 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~--~~~---~~I~~LV~LL~~---~~~~V~~eA 464 (576)
+++|+.|+.+++....+++..-++.++-||....+. ... ..+++++..|.. +++++...-
T Consensus 238 --~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 238 --KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp --TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred --cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 237899999999887789999999999999876552 111 236777777754 466666543
No 34
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.29 E-value=7.9e-05 Score=81.02 Aligned_cols=131 Identities=18% Similarity=0.011 Sum_probs=98.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG 247 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga 247 (576)
+..|+.++.-....|+..|..|...+..+.......--...|...|+++++...+.-|+.+|..|...++.|..+.++++
T Consensus 107 l~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~ 186 (429)
T cd00256 107 FNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADG 186 (429)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccC
Confidence 56777777777888888888887654332111111012335666677654478899999999999999999999999999
Q ss_pred HHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643 248 VPIIVSVLGEA--PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 248 vp~LV~lL~s~--~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~ 299 (576)
++.|+.+|+.. ...++.++.-++.-|+... +..+...+.+.|+.|+++++.
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~ 239 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP-HAAEVLKRLSLIQDLSDILKE 239 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhccH-HHHHhhccccHHHHHHHHHHh
Confidence 99999999763 4578888999999898754 466667778999999999974
No 35
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=6.4e-05 Score=85.32 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=97.7
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHhh-cCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHH
Q 041643 166 SFISTIQMG-QIKSRVDAANELASLAR-DNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFI 242 (576)
Q Consensus 166 ~li~~L~~G-~~e~k~~AA~~L~~La~-~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~i 242 (576)
.++.-|+.. ++-.+.+|+-.|..+-. .|++.-..+--.-.||.||.||+...+.+.+-.|++||++|.. -|.....+
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 345666655 55566777777765433 2332222221234589999999988669999999999999998 68999999
Q ss_pred HHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc
Q 041643 243 VDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC 298 (576)
Q Consensus 243 v~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~ 298 (576)
|++|+||.|++-|.. .-+++-+++..||-.|+..++. .+.+.|+|-.-+..|.
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylD 304 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLD 304 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHH
Confidence 999999999987765 5689999999999999986653 5677888777766664
No 36
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.6e-05 Score=83.17 Aligned_cols=127 Identities=18% Similarity=0.308 Sum_probs=115.5
Q ss_pred cCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHH
Q 041643 173 MGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPII 251 (576)
Q Consensus 173 ~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~L 251 (576)
+-+.+.|+.|...|..+..+ -+|..-++..||.+||+.+|++++ ...++.|||.|+..+. +|.....+++.|+.+.|
T Consensus 94 s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 34889999999999999875 679999999999999999999988 9999999999999998 57889999999999999
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcccc
Q 041643 252 VSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDI 301 (576)
Q Consensus 252 V~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t 301 (576)
+..|.+ ++..++..|..|++.+-.+.+..++.|...++...|...|.+++
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~ 222 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN 222 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence 999965 56788899999999999999999999999999999999998753
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.14 E-value=2.8e-05 Score=86.44 Aligned_cols=325 Identities=20% Similarity=0.247 Sum_probs=184.0
Q ss_pred CcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC
Q 041643 156 SNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD 235 (576)
Q Consensus 156 ~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~ 235 (576)
..+-+..++......|...++-.|..|+.++..+.+.+++ .+-.. -++.|.++|.+.+ +.++..|..++..+ ..
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KC 181 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HC
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-cc
Confidence 3344455566667889999999999999999999876443 33333 5899999998888 99999999999999 22
Q ss_pred CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHH
Q 041643 236 QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTI 315 (576)
Q Consensus 236 ~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si 315 (576)
++.-..-.-...++.|.+++...++-.|......+..++...+...+. ...++.+..+|++.. .++. -.++
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~-----~~V~-~e~~ 252 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSS-----PSVV-YEAI 252 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHH-----HHHH-HHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccc-----cHHH-HHHH
Confidence 221100111223455555557788888888888888888766555421 345677777776431 0111 0011
Q ss_pred HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc--------hhc-
Q 041643 316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL--------WSA- 386 (576)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I--------ava- 386 (576)
..+......... .. ...+.+.+.....|++++ -.+..+|..++..+...+ .+.
T Consensus 253 ~~i~~l~~~~~~-~~-------------~~~~~L~~lL~s~~~nvr----~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~ 314 (526)
T PF01602_consen 253 RLIIKLSPSPEL-LQ-------------KAINPLIKLLSSSDPNVR----YIALDSLSQLAQSNPPAVFNQSLILFFLLY 314 (526)
T ss_dssp HHHHHHSSSHHH-HH-------------HHHHHHHHHHTSSSHHHH----HHHHHHHHHHCCHCHHHHGTHHHHHHHHHC
T ss_pred HHHHHhhcchHH-HH-------------hhHHHHHHHhhcccchhe----hhHHHHHHHhhcccchhhhhhhhhhheecC
Confidence 111111100000 00 000111111223344443 456666666654431111 222
Q ss_pred ccchHHHHhhhc-----cCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHH
Q 041643 387 ESNAELRRSAFK-----TNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVA 461 (576)
Q Consensus 387 e~~~~lrr~a~k-----~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~ 461 (576)
+.+..+|+.++. .+..-.+.+++.|+.++.+.++++++..++.+|+.++..++....-.+..++++|......+.
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~ 394 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVS 394 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCH
T ss_pred CCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhcccccc
Confidence 334445554432 122224567888888885543477899999999999876654334466777777776666677
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Chh-HHHHHHHHHHHHhcccCc
Q 041643 462 TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SDR-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 462 ~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d~-vq~~A~~~L~~lal~~~~ 522 (576)
.++...+.++.... ++.+..+ ++.|++++.. .++ +...++|.++..+...++
T Consensus 395 ~~~~~~i~~ll~~~----~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 395 NEIINVIRDLLSNN----PELREKI-----LKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp CHHHHHHHHHHHHS----TTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred chHHHHHHHHhhcC----hhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 77777777765322 1223333 5566666654 223 555566666655444443
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00089 Score=75.86 Aligned_cols=285 Identities=19% Similarity=0.265 Sum_probs=204.3
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-CChHHHHHHHHHHHHhhcCCc---
Q 041643 163 WVWSFISTIQMGQ-IKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-ASPDAQTAAANALFNIATDQE--- 237 (576)
Q Consensus 163 ~v~~li~~L~~G~-~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-~~~~~q~~AA~AL~nLa~~~~--- 237 (576)
.|-.++.++.+.+ .+.|.+|++.|-.+++ .||..++. -|.+||+..|+.+ .+++.-..+.-.+.++.++.+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 4566688888886 6899999999999986 58888874 5899999999876 337888899999999998653
Q ss_pred ---h-----------HHH-HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc-CChHHHHHHHhc-CCchhHHHhhccc
Q 041643 238 ---T-----------VRF-IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE-LDSIAQEEFVRE-NVTRSLISLLCMD 300 (576)
Q Consensus 238 ---~-----------~~~-iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~-~~~~~r~~i~~~-g~I~~LV~LL~~~ 300 (576)
+ .+. |-..+-|..++..+..-+-.|+..+...+.++-+ ..++.|+.+... -+|..||.+|+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D- 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD- 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-
Confidence 1 223 3357789999999999889999999999988554 567888887665 778999999952
Q ss_pred cccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCc
Q 041643 301 IALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCL 380 (576)
Q Consensus 301 t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~ 380 (576)
++ .+ ++-.+..-|..|..+|.
T Consensus 178 -----sr---------------------------------------E~---------------IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 178 -----SR---------------------------------------EP---------------IRNEAILLLSELVKDNS 198 (970)
T ss_pred -----hh---------------------------------------hh---------------hchhHHHHHHHHHccCc
Confidence 10 00 12245566677776654
Q ss_pred ccchhcccchHHHH-hhhccCchhHHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHH
Q 041643 381 LSLWSAESNAELRR-SAFKTNSPAAKAVLDQLLRLIHEES---DAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVA 451 (576)
Q Consensus 381 ~~Iavae~~~~lrr-~a~k~~s~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~ 451 (576)
.. ++ -+| ....+.|..+++.+. +.-+..-|+.-|-||-+.... ++.+.||.|.+
T Consensus 199 ~I----------QKlVAF-------ENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~k 261 (970)
T KOG0946|consen 199 SI----------QKLVAF-------ENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLK 261 (970)
T ss_pred hH----------HHHHHH-------HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence 32 11 112 345678888887643 224677888889999875443 35678999999
Q ss_pred hhcC---CC--------HHHH--HHHHHHHHhhcCCCCCCCHHHHH--HHHHCCCcHhHHHhhccCh-h--HHHHHHHHH
Q 041643 452 LLSN---RN--------VDVA--TEAVIALSKFVSPDNFNRSEHSK--AIIEFDGVPPLMRLLKISD-R--AQVHGLVFL 513 (576)
Q Consensus 452 LL~~---~~--------~~V~--~eAa~AL~nla~~~n~~~~~~~~--~Iv~~ggi~~Lv~LL~~~d-~--vq~~A~~~L 513 (576)
+|.. ++ ..|+ -+|-..+.-+.+++|+....|+. ++...+++..||.++-+.. + ++..++.++
T Consensus 262 lL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitv 341 (970)
T KOG0946|consen 262 LLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITV 341 (970)
T ss_pred hcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHH
Confidence 9842 12 1222 14556666777888876655554 8999999999999987653 2 777788888
Q ss_pred HHHh-cccCchHHHHh
Q 041643 514 CYLA-LSAGNSKALEQ 528 (576)
Q Consensus 514 ~~la-l~~~~~~~l~~ 528 (576)
..+. .|..|+..++.
T Consensus 342 AevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 342 AEVVRGNARNQDEFAD 357 (970)
T ss_pred HHHHHhchHHHHHHhh
Confidence 7775 45566777764
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.97 E-value=0.00068 Score=75.45 Aligned_cols=283 Identities=18% Similarity=0.206 Sum_probs=168.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCch
Q 041643 160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQET 238 (576)
Q Consensus 160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~ 238 (576)
+...+..+..-|++.++..|..|..+|.++.. ++.... .+|++.++|.+++ +.+++.|+.|+..+.. +++.
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~ 148 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDL 148 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCC
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHH
Confidence 34455555667888899999999999999873 333333 4789999999888 9999999999999987 3443
Q ss_pred HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHH
Q 041643 239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSL 318 (576)
Q Consensus 239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~ 318 (576)
.. .. .++.+.++|.+.+..++..|..++..+ ...+.... ..++.++..|..-.....+ |.. ..+
T Consensus 149 ~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~----~~q--~~i 212 (526)
T PF01602_consen 149 VE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDP----WLQ--IKI 212 (526)
T ss_dssp HH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSH----HHH--HHH
T ss_pred HH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccch----HHH--HHH
Confidence 22 22 589999999999999999999999988 22222211 3455555554311000011 110 000
Q ss_pred HhhhccccccccccCCCCCCCCCCCCCCCC----------cccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhccc
Q 041643 319 VQMKKEMTEKSTNVTNNSDGSSRGGHGQHY----------NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAES 388 (576)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~ 388 (576)
++.-... ... .+. +.......++. +.-.|+.++.++.
T Consensus 213 l~~l~~~--------------~~~---~~~~~~~~~~i~~l~~~l~s~~~~----V~~e~~~~i~~l~------------ 259 (526)
T PF01602_consen 213 LRLLRRY--------------APM---EPEDADKNRIIEPLLNLLQSSSPS----VVYEAIRLIIKLS------------ 259 (526)
T ss_dssp HHHHTTS--------------TSS---SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHS------------
T ss_pred HHHHHhc--------------ccC---ChhhhhHHHHHHHHHHHhhccccH----HHHHHHHHHHHhh------------
Confidence 1111000 000 000 00000000011 1122333333222
Q ss_pred chHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc-CCCHHHHHHHHHH
Q 041643 389 NAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS-NRNVDVATEAVIA 467 (576)
Q Consensus 389 ~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~-~~~~~V~~eAa~A 467 (576)
+..+....+++.|++++.+.+ +.++..++.+|..++...+..-. .....+..|. +.+..+++.+...
T Consensus 260 ----------~~~~~~~~~~~~L~~lL~s~~-~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 260 ----------PSPELLQKAINPLIKLLSSSD-PNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp ----------SSHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHCSSSHHHHHHHHHH
T ss_pred ----------cchHHHHhhHHHHHHHhhccc-chhehhHHHHHHHhhcccchhhh-hhhhhhheecCCCChhHHHHHHHH
Confidence 222246788899999998554 77999999999999876522111 2222333444 8889999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhh-ccChh-HHHHHHHHHHHHhcccCc
Q 041643 468 LSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLL-KISDR-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 468 L~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL-~~~d~-vq~~A~~~L~~lal~~~~ 522 (576)
|.+++. .++.+.| ++.|...+ +.+|. ++..++..++.++...+.
T Consensus 328 L~~l~~------~~n~~~I-----l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 328 LYKLAN------ESNVKEI-----LDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHH--------HHHHHHH-----HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred Hhhccc------ccchhhH-----HHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 999974 3556665 56777777 44465 888888888888754433
No 40
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.91 E-value=2e-05 Score=56.49 Aligned_cols=40 Identities=30% Similarity=0.525 Sum_probs=36.6
Q ss_pred cccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643 194 NRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 194 ~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~ 234 (576)
++++..+++.|+||+|++||++++ ++.|+.|+|+|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC
Confidence 458889999999999999999888 9999999999999973
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0002 Score=75.09 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=116.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVL 246 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~G 246 (576)
+..|++++.+.|..||+.|+..+.+|++.+..+++.|+.+.|++.|.+.++...+..|-.|+..|-.+ +.........+
T Consensus 130 l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 130 LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 56889999999999999999999999999999999999999999999887577889999999999985 56677788888
Q ss_pred CHHHHHHhhcC--CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643 247 GVPIIVSVLGE--APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 247 avp~LV~lL~s--~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~ 300 (576)
+...|..+|.+ .+...|..++..+.++...+...++.+...|.-..++.+..+.
T Consensus 210 G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l 265 (342)
T KOG2160|consen 210 GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSL 265 (342)
T ss_pred CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhcc
Confidence 89999999988 4577888899999999988777888777778877788777654
No 42
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.88 E-value=0.00083 Score=71.75 Aligned_cols=274 Identities=14% Similarity=0.149 Sum_probs=174.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc--------CCch
Q 041643 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT--------DQET 238 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~--------~~~~ 238 (576)
++.++.+-..+.+.....+++--+.+|+..+-..++.|-+..++++++.-. ......=+.+|+.... ..+.
T Consensus 228 l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k-~~t~k~d~~~l~k~~~el~vllltGDeS 306 (604)
T KOG4500|consen 228 LLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMK-DFTKKTDMLNLFKRIAELDVLLLTGDES 306 (604)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcc-cccchHHHHHHHHhhhhHhhhhhcCchH
Confidence 345555544444444444443333456777788889999999999998744 3344434445544443 2334
Q ss_pred HHHHHHcC-CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHH
Q 041643 239 VRFIVDVL-GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHS 317 (576)
Q Consensus 239 ~~~iv~~G-avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~ 317 (576)
-..+..-| ...-++..++|.+...+...+-+++|+|..++.+. .+.+.|.+.-|+++|..+..
T Consensus 307 Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~--------------- 370 (604)
T KOG4500|consen 307 MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKD--------------- 370 (604)
T ss_pred HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcC---------------
Confidence 44455444 56777888889999999999999999999887665 56677888889888853210
Q ss_pred HHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643 318 LVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF 397 (576)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~ 397 (576)
.|..|+ ++-++..||.+|..--+ -++.|
T Consensus 371 --------------------------------------vdgnV~--~qhA~lsALRnl~IPv~------------nka~~ 398 (604)
T KOG4500|consen 371 --------------------------------------VDGNVE--RQHACLSALRNLMIPVS------------NKAHF 398 (604)
T ss_pred --------------------------------------CCccch--hHHHHHHHHHhccccCC------------chhhc
Confidence 112221 45678899999975321 12244
Q ss_pred ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch------hhhCcHHHHHHhhcCCCHH-HHHHHHHHHHh
Q 041643 398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA------KEKRMIGPLVALLSNRNVD-VATEAVIALSK 470 (576)
Q Consensus 398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~------~~~~~I~~LV~LL~~~~~~-V~~eAa~AL~n 470 (576)
.+ .|+++.++..++.+. |.++---++++.-+....+- .....+..||+-=++.+.. |.-|.-+.+.-
T Consensus 399 ~~-----aGvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~ 472 (604)
T KOG4500|consen 399 AP-----AGVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG 472 (604)
T ss_pred cc-----cchHHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence 33 367778888887765 55554444444433222110 0112456666665666654 77777777776
Q ss_pred hcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 471 FVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 471 la~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
+.-...| .+-...+.+.|||+.+|.++....- .|.+|+.+||.++
T Consensus 473 lIkHs~~--kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 473 LIKHSKY--KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HHHhhHh--hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 6532111 3556788899999999999987766 6889999998875
No 43
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.87 E-value=3.4e-05 Score=64.65 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=68.1
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643 408 LDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAII 487 (576)
Q Consensus 408 V~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv 487 (576)
|+.|++.|.+++++.++..++.+||++. +..++|.|+++|++.++.|+..|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence 4678888855566899999999999652 34689999999999999999999999998842
Q ss_pred HCCCcHhHHHhhccCh-h-HHHHHHHHHH
Q 041643 488 EFDGVPPLMRLLKISD-R-AQVHGLVFLC 514 (576)
Q Consensus 488 ~~ggi~~Lv~LL~~~d-~-vq~~A~~~L~ 514 (576)
...++.|++++.+.+ . ++..|+.+|+
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 238889999998754 3 6777877663
No 44
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0049 Score=66.79 Aligned_cols=299 Identities=17% Similarity=0.120 Sum_probs=184.8
Q ss_pred HHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChh
Q 041643 182 AANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVK 261 (576)
Q Consensus 182 AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~ 261 (576)
|..-|.|||.+ -.--....+..-|.-||+.|...+ .+.-.....-|..|+.-.+|+..|.+.|.|..|+++....+++
T Consensus 283 a~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 283 AVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred HHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence 44447888864 344445566778899999999888 7887788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCC
Q 041643 262 VQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSR 341 (576)
Q Consensus 262 vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~ 341 (576)
++......|.|++.+ ...|..++..|.+|-|+.+|.+++. + .|+- ++... +
T Consensus 361 L~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~--~--~iA~--------~~lYh--------------~-- 411 (791)
T KOG1222|consen 361 LRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTK--H--GIAL--------NMLYH--------------L-- 411 (791)
T ss_pred HHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCccc--c--hhhh--------hhhhh--------------h--
Confidence 999999999999976 5788899999999999999988751 1 1110 00000 0
Q ss_pred CCCCCCCcccccccCCHHHHHHH-HHHHHHHHHHh-hcCCcccchhcccchHHHH-----hhhccCchhHHH--HHHHHH
Q 041643 342 GGHGQHYNKKDRELETPEVKAKV-RIACAEALWKL-SKGCLLSLWSAESNAELRR-----SAFKTNSPAAKA--VLDQLL 412 (576)
Q Consensus 342 ~~~g~~~~~~~~e~~d~~vk~~~-k~~Aa~ALw~L-a~g~~~~Iavae~~~~lrr-----~a~k~~s~a~~~--vV~~Ll 412 (576)
+-|..+|.-. ..+|..-+.+- -.|....| +-++-. +.=|.|.-.... .++.|+
T Consensus 412 -------------S~dD~~K~MfayTdci~~lmk~v~~~~~~~v-----dl~lia~ciNl~lnkRNaQlvceGqgL~~LM 473 (791)
T KOG1222|consen 412 -------------SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEV-----DLALIALCINLCLNKRNAQLVCEGQGLDLLM 473 (791)
T ss_pred -------------ccCcHHHHHHHHHHHHHHHHHHHHhcCCcee-----cHHHHHHHHHHHhccccceEEecCcchHHHH
Confidence 0122221000 01122111111 01111111 001100 000111111110 112233
Q ss_pred H-HhhhcCChhhHHHHHHHHHHHhcCCchhhhC---cHHHHHHhhcCC-CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643 413 R-LIHEESDAMLQTPAIRSIGCLAKTFPAKEKR---MIGPLVALLSNR-NVDVATEAVIALSKFVSPDNFNRSEHSKAII 487 (576)
Q Consensus 413 ~-lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~---~I~~LV~LL~~~-~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv 487 (576)
. -+...| .+. ++.+.|++......+.. .|+-|...+++. ++.--.|+...|+|++-++ .+-.+.+.
T Consensus 474 ~ra~k~~D--~lL---mK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d----ldw~~ilq 544 (791)
T KOG1222|consen 474 ERAIKSRD--LLL---MKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD----LDWAKILQ 544 (791)
T ss_pred HHHhcccc--hHH---HHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC----CCHHHHHh
Confidence 2 222222 222 34556666443333332 367788877654 4556778889999998654 35567788
Q ss_pred HCCCcHhHHHhhccC---hhHHHHHHHHHHHHhcccCchHHHHhccchhhHhhh
Q 041643 488 EFDGVPPLMRLLKIS---DRAQVHGLVFLCYLALSAGNSKALEQARALNALEGA 538 (576)
Q Consensus 488 ~~ggi~~Lv~LL~~~---d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~ 538 (576)
+..-+|-+-+-|..+ |..+..-+..++.++....-..-++.+++++.|..+
T Consensus 545 ~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 545 SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIEL 598 (791)
T ss_pred hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHH
Confidence 889999999888765 235666666666666555556677889999887633
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.74 E-value=0.0037 Score=68.17 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=40.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChhHHHHHHHHHHHHh
Q 041643 444 RMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLA 517 (576)
Q Consensus 444 ~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~la 517 (576)
++++.|..+++... ++..++++|+.+-.. ..+++|++++.... +...|..+++.|.
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---------------~av~~L~~~l~d~~-~aR~A~eA~~~It 295 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGDV---------------EAAPWCLEAMREPP-WARLAGEAFSLIT 295 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCCc---------------chHHHHHHHhcCcH-HHHHHHHHHHHhh
Confidence 67888888887644 888899999877542 37788888885333 6666777777775
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.73 E-value=7e-05 Score=78.54 Aligned_cols=127 Identities=16% Similarity=0.191 Sum_probs=99.3
Q ss_pred HhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHH------ccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLL------KEAASPDAQTAAANALFNIATDQETVRFIVD 244 (576)
Q Consensus 171 L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL------~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~ 244 (576)
+++.+.+...-|...|.+|.+. +++|..+.+.|++++|+++| .+......|.++.-+++-|+-+++....+.+
T Consensus 159 l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~ 237 (312)
T PF03224_consen 159 LSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK 237 (312)
T ss_dssp T-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred hcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc
Confidence 3334555667888999999985 89999999999999999999 4444477889999999999999999999999
Q ss_pred cCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChH-HHHHHHhcCCchhHHHhhcc
Q 041643 245 VLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSI-AQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 245 ~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~-~r~~i~~~g~I~~LV~LL~~ 299 (576)
.+.||.|+++++. ..+++...+.+++.|+....+. +-..+...| ++++++.|..
T Consensus 238 ~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~-~l~~l~~L~~ 293 (312)
T PF03224_consen 238 KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG-LLKTLQNLSE 293 (312)
T ss_dssp TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH--HHHHHHHHHS
T ss_pred cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc-HHHHHHHHhc
Confidence 9999999999976 5688999999999999976653 555666655 4667777753
No 47
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.72 E-value=0.0052 Score=68.74 Aligned_cols=349 Identities=15% Similarity=0.148 Sum_probs=205.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIAT-DQETVRFIVD 244 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~-~~~~~~~iv~ 244 (576)
++..+..-+++....|-...-|+.-.+++++.-+++.|++|.|..++...+ +++.+..-+..+..+.. ..+....+.+
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 467777888888899999999998888888888999999999999997542 26777555555555555 4567889999
Q ss_pred cCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhcCChHHH--HHHHhcCCchhHHHhhccccc--c--CCCc-chhhhhHHH
Q 041643 245 VLGVPIIVSVLGEAP-VKVQVAVANLVARMAELDSIAQ--EEFVRENVTRSLISLLCMDIA--L--DLPK-PESAKTTIH 316 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~-~~vq~~Aa~aL~~LA~~~~~~r--~~i~~~g~I~~LV~LL~~~t~--~--~~~~-~i~~~~si~ 316 (576)
++..+.|..+|.+.+ ..+.+.....+-++-..++..- ...-...+|+.+-.++.-++. + ..+. +.+.....|
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~h 173 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDH 173 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchh
Confidence 999999999998887 8888888888888775442211 111112333433333331211 0 0000 111111222
Q ss_pred HHHhhhccccc--c-cccc---CC---CCCCCC--------CCCCCCCCcccc------------cccCCHHHHHHHHHH
Q 041643 317 SLVQMKKEMTE--K-STNV---TN---NSDGSS--------RGGHGQHYNKKD------------RELETPEVKAKVRIA 367 (576)
Q Consensus 317 ~~v~~~~~~~~--~-~~~~---~~---~~~~~~--------~~~~g~~~~~~~------------~e~~d~~vk~~~k~~ 367 (576)
..++.+..... . .+.. .. .+..++ ..-++...+.+. +...||... .+..
T Consensus 174 q~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s--~~l~ 251 (678)
T KOG1293|consen 174 QLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS--ERLR 251 (678)
T ss_pred hheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc--HHHH
Confidence 22222221100 0 0000 00 000000 000111111010 111111111 1234
Q ss_pred HHHHHHHhhcCCccc----------------c------------------------------------------------
Q 041643 368 CAEALWKLSKGCLLS----------------L------------------------------------------------ 383 (576)
Q Consensus 368 Aa~ALw~La~g~~~~----------------I------------------------------------------------ 383 (576)
++.+|-++..++-+. |
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 555665554443100 0
Q ss_pred ---------------------------------------------hhc--------ccchHHHHhhh-------------
Q 041643 384 ---------------------------------------------WSA--------ESNAELRRSAF------------- 397 (576)
Q Consensus 384 ---------------------------------------------ava--------e~~~~lrr~a~------------- 397 (576)
.+- -.+.+.+++++
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01123333332
Q ss_pred ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
.+. +.-..+.++|++++..++ ..++..++++|.|++-.|.+. ++|+|..|...+.+.++.+++.+-|+|.++.
T Consensus 412 ~tg-~~~~dv~~plvqll~dp~-~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 412 RTG-LKRNDVAQPLVQLLMDPE-IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HcC-CccchhHHHHHHHhhCcc-hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 122 344578889999997654 678889999999999877653 5689999999999999999999999999987
Q ss_pred CCCCCCCHHH-HHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643 473 SPDNFNRSEH-SKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS 523 (576)
Q Consensus 473 ~~~n~~~~~~-~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~ 523 (576)
-+ +.+. +...-..=+...++.+.+..|. ||..++.+|.|+.-+..++
T Consensus 490 f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 490 FN----CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred hc----chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 32 2333 3344444456666777777776 9999999999997654444
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.69 E-value=0.0024 Score=68.17 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=168.4
Q ss_pred HhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHHhhcCCc
Q 041643 160 ILAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK-EAASPDAQTAAANALFNIATDQE 237 (576)
Q Consensus 160 i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~-~g~~~~~q~~AA~AL~nLa~~~~ 237 (576)
...+-..+...++++ +.+-..-|+++|-.+.+. +++|-.++.+.|+..|+..|. +..+...|.....+++-|+-++.
T Consensus 154 ~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~ 232 (442)
T KOG2759|consen 154 LDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH 232 (442)
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH
Confidence 334445556677775 566777888899999997 789999999999999999994 33337899999999999999998
Q ss_pred hHHHHHHcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCCh------HHHHHHHhcCCchhHHHhhccccccCCCc-ch
Q 041643 238 TVRFIVDVLGVPIIVSVLGEA-PVKVQVAVANLVARMAELDS------IAQEEFVRENVTRSLISLLCMDIALDLPK-PE 309 (576)
Q Consensus 238 ~~~~iv~~Gavp~LV~lL~s~-~~~vq~~Aa~aL~~LA~~~~------~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i 309 (576)
-.+.+-.-+-|+.|++++++. .+.|-.-...++.|+....+ +....+.. +.+++-+++|.... ++. .+
T Consensus 233 ~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rk---ysDEDL 308 (442)
T KOG2759|consen 233 AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERK---YSDEDL 308 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcC---CCcHHH
Confidence 888888888999999999875 47788888889999987653 12222333 45677777775432 111 01
Q ss_pred hhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC----cccc-h
Q 041643 310 SAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC----LLSL-W 384 (576)
Q Consensus 310 ~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~----~~~I-a 384 (576)
.. .+..+.....+ +. +.....|. -+.++ ..-.--|+=..-+ .+|+ .
T Consensus 309 ~~--di~~L~e~L~~----------------------sv--q~LsSFDe-Y~sEl--~sG~L~WSP~Hk~e~FW~eNa~r 359 (442)
T KOG2759|consen 309 VD--DIEFLTEKLKN----------------------SV--QDLSSFDE-YKSEL--RSGRLEWSPVHKSEKFWRENADR 359 (442)
T ss_pred HH--HHHHHHHHHHH----------------------HH--HhhccHHH-HHHHH--HhCCcCCCccccccchHHHhHHH
Confidence 10 00000000000 00 00000010 00000 0001111000000 0000 1
Q ss_pred hcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHH
Q 041643 385 SAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVD 459 (576)
Q Consensus 385 vae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~ 459 (576)
.-|.+ -.++..|+++|+.+++|.+..-|+--||..+|..|.. +.|+=..+.+||.+.+++
T Consensus 360 lnenn---------------yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~ 424 (442)
T KOG2759|consen 360 LNENN---------------YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPE 424 (442)
T ss_pred Hhhcc---------------HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCch
Confidence 11111 2467889999998777888888888899999988752 336668899999999999
Q ss_pred HHHHHHHHHHhhcC
Q 041643 460 VATEAVIALSKFVS 473 (576)
Q Consensus 460 V~~eAa~AL~nla~ 473 (576)
|+.+|-.|+-++-.
T Consensus 425 Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 425 VRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987753
No 49
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.58 E-value=0.00014 Score=51.96 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=36.4
Q ss_pred CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643 236 QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274 (576)
Q Consensus 236 ~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA 274 (576)
++++..+++.|++|+|+++|++++.+++..++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999999999999999999999997
No 50
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0055 Score=69.51 Aligned_cols=386 Identities=15% Similarity=0.118 Sum_probs=197.7
Q ss_pred cchHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC
Q 041643 157 NDPILAWVWSFIS-TIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD 235 (576)
Q Consensus 157 ~~~i~~~v~~li~-~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~ 235 (576)
.|.|...||.+|. -+++.+-..|..|+.++++.....+..+..=+..+++|.+++++.+.+ .-.+.-+||+|+.++..
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADF 436 (859)
T ss_pred cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhh
Confidence 7778888999988 999999999999999999998765555554456789999999998655 77889999999999984
Q ss_pred -CchH-HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH-----HHHHhcCCchhHHHhhccccccCC---
Q 041643 236 -QETV-RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ-----EEFVRENVTRSLISLLCMDIALDL--- 305 (576)
Q Consensus 236 -~~~~-~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r-----~~i~~~g~I~~LV~LL~~~t~~~~--- 305 (576)
++-. ......+.++.|++=|.+. +.+-.+++|++-+|+..-++.- ..+.. -..+++|.=|-..|...+
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnq 514 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQ 514 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccch
Confidence 3221 1233455666666666554 6888999999999994322110 00111 122333332211221000
Q ss_pred Cc-chhhhhHHHHHHhhhcccccccccc------CCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcC
Q 041643 306 PK-PESAKTTIHSLVQMKKEMTEKSTNV------TNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKG 378 (576)
Q Consensus 306 ~~-~i~~~~si~~~v~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g 378 (576)
+. ..+.=.++..++.......+..-.+ ......++ + .....+|..-..+++..-+..|..+-+-
T Consensus 515 sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~-~--------~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk 585 (859)
T KOG1241|consen 515 SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS-S--------QILSLADRAQLNELQSLLCNTLQSIIRK 585 (859)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-H--------HhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000002222221111100000000 00000000 0 0011233332234444555555443211
Q ss_pred CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhc
Q 041643 379 CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLS 454 (576)
Q Consensus 379 ~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~ 454 (576)
- +++.|. ....++..|++++++.++..+++-|..+++.++...... -..++|-|..-|+
T Consensus 586 ~---------~~~~~~--------~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~ 648 (859)
T KOG1241|consen 586 V---------GSDIRE--------VSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLS 648 (859)
T ss_pred c---------cccchh--------HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Confidence 0 112222 234567778888887666778999999999887533211 1134677777775
Q ss_pred CCC-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh---HHHHHHHHHHHHhcccCchHHHHhcc
Q 041643 455 NRN-VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR---AQVHGLVFLCYLALSAGNSKALEQAR 530 (576)
Q Consensus 455 ~~~-~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~---vq~~A~~~L~~lal~~~~~~~l~~~~ 530 (576)
+-. ..|-.-|..-++.++- .+..+ -...-.+-...|++-|.+... ++-.-+...+-||+.-+..-+=-=.-
T Consensus 649 n~~e~qVc~~aVglVgdl~r---aL~~~--i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~ 723 (859)
T KOG1241|consen 649 NFQEYQVCAAAVGLVGDLAR---ALEDD--ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM 723 (859)
T ss_pred cchHHHHHHHHHHHHHHHHH---HHHhh--hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 443 3344445555555541 01001 011122445667777765532 33334444555665444322111123
Q ss_pred chhhHh-hh-hcccCCCCCcHHHHHHHHHHHHHhhcC---CCC-----CCCCCCCC
Q 041643 531 ALNALE-GA-ARTVLPQHPELRDLFAQAIYHLTLYQA---GSH-----PHRQTYAP 576 (576)
Q Consensus 531 ~l~~Le-~~-~~~~~~q~~~~~~l~~~a~~~l~~y~~---~~~-----~~~~~~~~ 576 (576)
+++.|. ++ -+..---+...+.+-+--.++|+.|-+ |-+ .+-+||+|
T Consensus 724 vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~ 779 (859)
T KOG1241|consen 724 VMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVP 779 (859)
T ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchH
Confidence 344454 22 122222233444444556778888865 322 24567765
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.47 E-value=0.0058 Score=66.65 Aligned_cols=197 Identities=18% Similarity=0.158 Sum_probs=115.5
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643 203 EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE 282 (576)
Q Consensus 203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~ 282 (576)
..+++.|+..|+.+.++.....|+.+|... +... ++..|++.|.+.++.++..++.+|+.+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~--------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ--EDAL--------DLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH--------HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 346899999996544366666666666322 1111 37899999999988899999998875432
Q ss_pred HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643 283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA 362 (576)
Q Consensus 283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~ 362 (576)
.+..+.|+.+|.++ ||.++
T Consensus 116 ----~~a~~~L~~~L~~~--------------------------------------------------------~p~vR- 134 (410)
T TIGR02270 116 ----RQAEPWLEPLLAAS--------------------------------------------------------EPPGR- 134 (410)
T ss_pred ----hHHHHHHHHHhcCC--------------------------------------------------------ChHHH-
Confidence 23457778887432 23222
Q ss_pred HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE 442 (576)
Q Consensus 363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~ 442 (576)
..+..+|..- +. ...+.|..+|++.+ +.+...|+++||.+- .
T Consensus 135 ---~aal~al~~r--~~--------------------------~~~~~L~~~L~d~d-~~Vra~A~raLG~l~------~ 176 (410)
T TIGR02270 135 ---AIGLAALGAH--RH--------------------------DPGPALEAALTHED-ALVRAAALRALGELP------R 176 (410)
T ss_pred ---HHHHHHHHhh--cc--------------------------ChHHHHHHHhcCCC-HHHHHHHHHHHHhhc------c
Confidence 2333333321 00 01345566666544 777788888888774 2
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC------------CCCCHHHHHHHHHC----CCcHhHHHhhccChhHH
Q 041643 443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPD------------NFNRSEHSKAIIEF----DGVPPLMRLLKISDRAQ 506 (576)
Q Consensus 443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~------------n~~~~~~~~~Iv~~----ggi~~Lv~LL~~~d~vq 506 (576)
...+|.|...+++.++.|+..|++++..+...+ +.........+... ..++.|.+|++... ++
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~-vr 255 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA-TR 255 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh-hH
Confidence 345777777788888888888888777663211 00000000111111 23455666665433 77
Q ss_pred HHHHHHHHHH
Q 041643 507 VHGLVFLCYL 516 (576)
Q Consensus 507 ~~A~~~L~~l 516 (576)
..++.+++.+
T Consensus 256 ~~a~~AlG~l 265 (410)
T TIGR02270 256 REALRAVGLV 265 (410)
T ss_pred HHHHHHHHHc
Confidence 7788877766
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0068 Score=67.92 Aligned_cols=394 Identities=17% Similarity=0.152 Sum_probs=201.4
Q ss_pred ccHHHHHHHHHhh-----hcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 041643 119 ADFKKVFSLLESS-----IGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDN 193 (576)
Q Consensus 119 ~~l~~l~~~L~~~-----~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~ 193 (576)
..++.|...|++. -|...+|-++--.... -+-.-+.+.|+.+++-.++...+..++..|..|..++-..--.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~--~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~- 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ--FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII- 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH--HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-
Confidence 3466677777542 2345555554211000 0001122667777888888888999999999888776543322
Q ss_pred cccHHHHHhcCC-HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 041643 194 NRNRKIIVEEGG-ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVAR 272 (576)
Q Consensus 194 ~~~~~~I~~~Gg-IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~ 272 (576)
.++..+..-.- +..|-.|-.+.+ ++++++-..+|.-|..-...+-.=.-.+.|..+.+.-++.+++|--.|+.....
T Consensus 205 -~~qal~~~iD~Fle~lFalanD~~-~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 205 -QTQALYVHIDKFLEILFALANDED-PEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred -CcHHHHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 23333333222 445555554445 999999999999888643332222235667788888888889999999999999
Q ss_pred HhcCChHHHHHHHhc--CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccC--CCCCCCCCCC-CCCC
Q 041643 273 MAELDSIAQEEFVRE--NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVT--NNSDGSSRGG-HGQH 347 (576)
Q Consensus 273 LA~~~~~~r~~i~~~--g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~--~~~~~~~~~~-~g~~ 347 (576)
+|.. |.+++.+... ..||.|++=+.-.. . .+ +..+++-....-..+ -.+|.+..++ .|+.
T Consensus 283 ~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd---~--------D~---~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~ 347 (885)
T KOG2023|consen 283 LAEQ-PICKEVLQPYLDKLIPVLLSGMVYSD---D--------DI---ILLKNNEEDESVPDREEDIKPRFHKSKEHGNG 347 (885)
T ss_pred HhcC-cCcHHHHHHHHHHHHHHHHccCcccc---c--------cH---HHhcCccccccCCchhhhccchhhhchhccCc
Confidence 9975 5788777654 55666665443110 0 00 111111000000000 0111111110 1222
Q ss_pred CcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhc---CChhhH
Q 041643 348 YNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEE---SDAMLQ 424 (576)
Q Consensus 348 ~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~---~~~~lq 424 (576)
.-+..-+.+|.+- -.+-+..=|||=.-+..-+ +.-...|+ ..+++.++.+|+.+ +.=.++
T Consensus 348 ~~~~~eDdddDe~----DDdD~~~dWNLRkCSAAaL-------DVLanvf~------~elL~~l~PlLk~~L~~~~W~vr 410 (885)
T KOG2023|consen 348 EDADDEDDDDDED----DDDDAFSDWNLRKCSAAAL-------DVLANVFG------DELLPILLPLLKEHLSSEEWKVR 410 (885)
T ss_pred ccccccccccccc----ccccccccccHhhccHHHH-------HHHHHhhH------HHHHHHHHHHHHHHcCcchhhhh
Confidence 1000000011100 0011222233321111100 00111121 13455555555432 223688
Q ss_pred HHHHHHHHHHhcCCch---h-hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhc
Q 041643 425 TPAIRSIGCLAKTFPA---K-EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLK 500 (576)
Q Consensus 425 ~~a~~aLgnLa~~~~~---~-~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~ 500 (576)
+.++-|+|.+|...-. . =...||-|+.+|+++.+-|+.-++|+|++++.-- .+..+.+++ .|.|-.||+
T Consensus 411 EagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv--~~~~~~~~f-----~pvL~~ll~ 483 (885)
T KOG2023|consen 411 EAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV--VQDSRDEYF-----KPVLEGLLR 483 (885)
T ss_pred hhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhH--hcCChHhhh-----HHHHHHHHH
Confidence 9999999999863211 0 0125788999999999999999999999996311 111122332 233333443
Q ss_pred ----cChhHHHHHHHHHHHHhcccCchHHHHhccchhhHh----hhhcccCCCCCcHHHHHHHHHHHHHhh
Q 041643 501 ----ISDRAQVHGLVFLCYLALSAGNSKALEQARALNALE----GAARTVLPQHPELRDLFAQAIYHLTLY 563 (576)
Q Consensus 501 ----~~d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le----~~~~~~~~q~~~~~~l~~~a~~~l~~y 563 (576)
+...||..|+.+...+-.+++. +.+|-|+ .+.....-=+++|--|+-.|++.|.-|
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A~~-------eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEAGE-------ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 3334999999988776444433 2233332 111111111244444666778777664
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=97.45 E-value=0.018 Score=67.17 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=89.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch-
Q 041643 160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET- 238 (576)
Q Consensus 160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~- 238 (576)
+..++..+...|...++-.|..||-++..+-..++ ..+.+.|-++.|.++|.+.+ +.++.+|..+|..+......
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhCchh
Confidence 34445555667778899999999999999876543 44556778999999998888 99999999999999753210
Q ss_pred ----H---HH-------------------HHH---------cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hHHH-
Q 041643 239 ----V---RF-------------------IVD---------VLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SIAQ- 281 (576)
Q Consensus 239 ----~---~~-------------------iv~---------~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~~r- 281 (576)
+ .. +.. ...+..+...|++.+..|.-.|+.++.++.... ++..
T Consensus 214 l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~ 293 (746)
T PTZ00429 214 IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIE 293 (746)
T ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH
Confidence 0 00 000 113444555566777788888888888887532 2322
Q ss_pred HHHHhcCCchhHHHhhccc
Q 041643 282 EEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 282 ~~i~~~g~I~~LV~LL~~~ 300 (576)
..+.+ ..+|||.|++++
T Consensus 294 ~~~~r--l~~pLv~L~ss~ 310 (746)
T PTZ00429 294 RCTVR--VNTALLTLSRRD 310 (746)
T ss_pred HHHHH--HHHHHHHhhCCC
Confidence 22222 237888887544
No 54
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.43 E-value=0.018 Score=60.51 Aligned_cols=213 Identities=24% Similarity=0.306 Sum_probs=147.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
+..++..+...+...|..|+..|+.+.. .-.+|+|.++|.+.+ +..+..|+.+|+++-. ..
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~----~~--- 105 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDED-PRVRDAAADALGELGD----PE--- 105 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC----hh---
Confidence 3344677888888889999888665432 237899999999988 8999999998887743 22
Q ss_pred HcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643 244 DVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322 (576)
Q Consensus 244 ~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~ 322 (576)
+++.|+++|. +++..++..++++|+.+-.. .++.+|+.++..+... +
T Consensus 106 ---a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~---------------~--- 153 (335)
T COG1413 106 ---AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSG---------------S--- 153 (335)
T ss_pred ---HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhh---------------h---
Confidence 6889999998 58889999999999887632 2488999999654200 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643 323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402 (576)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~ 402 (576)
. ... ..++. . .++..+..+|+.+-..
T Consensus 154 a----------------------~~~------~~~~~-~-~~r~~a~~~l~~~~~~------------------------ 179 (335)
T COG1413 154 A----------------------AAA------LDAAL-L-DVRAAAAEALGELGDP------------------------ 179 (335)
T ss_pred h----------------------hhh------ccchH-H-HHHHHHHHHHHHcCCh------------------------
Confidence 0 000 00111 0 3456788888876322
Q ss_pred hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHH
Q 041643 403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEH 482 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~ 482 (576)
..++.|...+.+.+ ..++..+..+||.+.... ..+.+.++..+...+..++..++.+|+..-..
T Consensus 180 ---~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~-------- 243 (335)
T COG1413 180 ---EAIPLLIELLEDED-ADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIGDE-------- 243 (335)
T ss_pred ---hhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc--------
Confidence 13456667776654 678889999999886321 13568888899999999999999999877432
Q ss_pred HHHHHHCCCcHhHHHhhccChh
Q 041643 483 SKAIIEFDGVPPLMRLLKISDR 504 (576)
Q Consensus 483 ~~~Iv~~ggi~~Lv~LL~~~d~ 504 (576)
..+..|+..+...+.
T Consensus 244 -------~~~~~l~~~l~~~~~ 258 (335)
T COG1413 244 -------EAVDALAKALEDEDV 258 (335)
T ss_pred -------hhHHHHHHHHhccch
Confidence 244555666665554
No 55
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.41 E-value=0.0064 Score=65.66 Aligned_cols=264 Identities=17% Similarity=0.187 Sum_probs=169.2
Q ss_pred HHHHHHHhcCCHHH--HHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHH
Q 041643 165 WSFISTIQMGQIKS--RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRF 241 (576)
Q Consensus 165 ~~li~~L~~G~~e~--k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~ 241 (576)
..++.+++..+.+. |.+|+..|-.... .+|++.|+..| ....+.+-+....++.|...+..|.+|=+++ +....
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34578888888877 8899988877665 47889998877 6666666676654889999999999999976 45678
Q ss_pred HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHh
Q 041643 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQ 320 (576)
Q Consensus 242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~ 320 (576)
+|++|++...+--++-.++.+-..+|-+|+|.+-+. -..+..+.+-.+-.-|.-|-
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA----------------------- 316 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA----------------------- 316 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-----------------------
Confidence 999999999988888888899999999999998653 22222232222111111100
Q ss_pred hhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccC
Q 041643 321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTN 400 (576)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~ 400 (576)
...|.- ++-.||-|..-|+.+. |-..+.|+++
T Consensus 317 ---------------------------------~skDel----~R~~AClAV~vlat~K-------E~E~~VrkS~---- 348 (832)
T KOG3678|consen 317 ---------------------------------FSKDEL----LRLHACLAVAVLATNK-------EVEREVRKSG---- 348 (832)
T ss_pred ---------------------------------cchHHH----HHHHHHHHHhhhhhhh-------hhhHHHhhcc----
Confidence 011222 2457888888887542 2234566653
Q ss_pred chhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhh----CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643 401 SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEK----RMIGPLVALLSNRNVDVATEAVIALSKFVSPDN 476 (576)
Q Consensus 401 s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~----~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n 476 (576)
.-++|++|+..+. | |..||+..+... .-+..||-+|++.--+.+.-+|.-++--|.-..
T Consensus 349 ---TlaLVEPlva~~D----P----------~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs 411 (832)
T KOG3678|consen 349 ---TLALVEPLVASLD----P----------GRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS 411 (832)
T ss_pred ---chhhhhhhhhccC----c----------chhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence 2357888876542 2 234443332211 247888889987766666666665553332110
Q ss_pred CCCHHHHHHHHHCCCcHhHHHhhccChhHHH-HHHHHHHHHhcccC
Q 041643 477 FNRSEHSKAIIEFDGVPPLMRLLKISDRAQV-HGLVFLCYLALSAG 521 (576)
Q Consensus 477 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~-~A~~~L~~lal~~~ 521 (576)
- ...-+...+-|+|..|-++..+.|.+.. -|-.+|..|-..+|
T Consensus 412 ~--Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 412 L--QGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVP 455 (832)
T ss_pred h--ccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence 0 1123566788999999999987777543 36666655544444
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=97.37 E-value=0.065 Score=62.66 Aligned_cols=255 Identities=12% Similarity=0.099 Sum_probs=155.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV 245 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~ 245 (576)
+.+..+++.+.+.|.-.--.|.+.+..+++. .+ =.|..|.+=|.+.+ +..+-.|.++|++|-. ..+++.
T Consensus 72 dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--al---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~-----~~i~e~ 140 (746)
T PTZ00429 72 DVVKLAPSTDLELKKLVYLYVLSTARLQPEK--AL---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV-----SSVLEY 140 (746)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HH---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc-----HHHHHH
Confidence 3367788888888887777777777654321 22 15778888888878 8899888888877644 223222
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643 246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM 325 (576)
Q Consensus 246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~ 325 (576)
.++.+.+.|.+.++-|+..|+.++..+-..+|+ .+...|.++-|.++|...
T Consensus 141 -l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~------------------------- 191 (746)
T PTZ00429 141 -TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDN------------------------- 191 (746)
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCC-------------------------
Confidence 456778888888899999999999998765553 444567777788877421
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643 326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405 (576)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~ 405 (576)
||. +..+|..+|..+...+... +. ...
T Consensus 192 -------------------------------dp~----Vv~nAl~aL~eI~~~~~~~---------l~---------l~~ 218 (746)
T PTZ00429 192 -------------------------------NPV----VASNAAAIVCEVNDYGSEK---------IE---------SSN 218 (746)
T ss_pred -------------------------------Ccc----HHHHHHHHHHHHHHhCchh---------hH---------HHH
Confidence 121 2345666666665332211 10 112
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 041643 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKA 485 (576)
Q Consensus 406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~ 485 (576)
..+..|+..|.+-+ +-.|...+..|.............+|..+...|++.+.-|.-+|+.++.+++..- .++..+.
T Consensus 219 ~~~~~Ll~~L~e~~-EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~---~~~~~~~ 294 (746)
T PTZ00429 219 EWVNRLVYHLPECN-EWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC---SQELIER 294 (746)
T ss_pred HHHHHHHHHhhcCC-hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC---CHHHHHH
Confidence 34555666554433 5666666666643211111112356788888888889999999999999886421 1232222
Q ss_pred HHHCCCcHhHHHhhccChhHHHHHHHHHHHHhc
Q 041643 486 IIEFDGVPPLMRLLKISDRAQVHGLVFLCYLAL 518 (576)
Q Consensus 486 Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal 518 (576)
+.. ...++|+.|+.+..++|.-++..+..++.
T Consensus 295 ~~~-rl~~pLv~L~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 295 CTV-RVNTALLTLSRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHH-HHHHHHHHhhCCCccHHHHHHHHHHHHHH
Confidence 211 12267777764333477666666655543
No 57
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.029 Score=66.44 Aligned_cols=324 Identities=15% Similarity=0.088 Sum_probs=175.1
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643 168 ISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL 246 (576)
Q Consensus 168 i~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G 246 (576)
+..++.. ..-.|..-+..+..+++. +-.. ---+.++-|.+-.++++ +..|+-|...|+.+...-.++..=.-..
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~-~l~e---~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~~~ 159 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARN-DLPE---KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHLDD 159 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHh-cccc---chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhHHH
Confidence 4444444 445667777888888875 2111 12234666677778888 9999999999999987544433111112
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccCCCc---chh------------
Q 041643 247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPK---PES------------ 310 (576)
Q Consensus 247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~~~~---~i~------------ 310 (576)
..+.|.+-+.+++..++..|+.|+..++...+......-.. -.+|.++..+..-...++.. .+.
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence 45677777777766699999999999886543333333222 35666777664221111111 000
Q ss_pred -hhhHHHHHHhhhcccccccc-----------------ccCC--CCCCCCCCCCCCCCcccc-----c----------cc
Q 041643 311 -AKTTIHSLVQMKKEMTEKST-----------------NVTN--NSDGSSRGGHGQHYNKKD-----R----------EL 355 (576)
Q Consensus 311 -~~~si~~~v~~~~~~~~~~~-----------------~~~~--~~~~~~~~~~g~~~~~~~-----~----------e~ 355 (576)
.+..+..++........+.. ..+| .+..-..+..=++.+.+. . |.
T Consensus 240 ~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~de 319 (1075)
T KOG2171|consen 240 LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDE 319 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccc
Confidence 01111111111111100000 0000 000000000000000000 0 00
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 041643 356 ETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLA 435 (576)
Q Consensus 356 ~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa 435 (576)
+|.++ -...|..+|-.||.+=.. .-.+.-+++.+-.+|.+.+ ...+..++.+|+.++
T Consensus 320 d~~~~---~~~~A~~~lDrlA~~L~g-------------------~~v~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~ 376 (1075)
T KOG2171|consen 320 DDEET---PYRAAEQALDRLALHLGG-------------------KQVLPPLFEALEAMLQSTE-WKERHAALLALSVIA 376 (1075)
T ss_pred ccccC---cHHHHHHHHHHHHhcCCh-------------------hhehHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 00000 012344444444432100 1112235566777787765 777889999999998
Q ss_pred cCCchhh----hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccCh-h-HHHHH
Q 041643 436 KTFPAKE----KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD-R-AQVHG 509 (576)
Q Consensus 436 ~~~~~~~----~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d-~-vq~~A 509 (576)
....+.= .++++..+..|++.++.|+-.|+.||+.++++ ..++-++.-. +--++.|+..+.+.. . +|.+|
T Consensus 377 EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~std---l~p~iqk~~~-e~l~~aL~~~ld~~~~~rV~ahA 452 (1075)
T KOG2171|consen 377 EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTD---LQPEIQKKHH-ERLPPALIALLDSTQNVRVQAHA 452 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh---hcHHHHHHHH-HhccHHHHHHhcccCchHHHHHH
Confidence 7654421 14677788889999999999999999999864 2355555443 456778899998654 3 89998
Q ss_pred HHHHHHHhcccCch
Q 041643 510 LVFLCYLALSAGNS 523 (576)
Q Consensus 510 ~~~L~~lal~~~~~ 523 (576)
+.++-+.+...+.+
T Consensus 453 a~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 453 AAALVNFSEECDKS 466 (1075)
T ss_pred HHHHHHHHHhCcHH
Confidence 88888876555443
No 58
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.27 E-value=0.00038 Score=53.59 Aligned_cols=55 Identities=22% Similarity=0.156 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHH
Q 041643 219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARM 273 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~L 273 (576)
+..+..|+++|++++........-....++|.|+.+|++++++|+..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999987665554446677999999999999999999999999876
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.26 E-value=0.00091 Score=55.87 Aligned_cols=84 Identities=27% Similarity=0.391 Sum_probs=66.5
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643 166 SFISTI-QMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD 244 (576)
Q Consensus 166 ~li~~L-~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~ 244 (576)
.++..| +..+...|..|+..|+.+- + ...+|.|+++|++.+ +.++..|+++|+.+. .
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~---~--------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG---D--------PEAIPALIELLKDED-PMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT---H--------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCH----------H
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC---C--------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhC----------C
Confidence 457878 7778999999999998542 1 135899999998878 999999999999884 2
Q ss_pred cCCHHHHHHhhcCCC-hhHHHHHHHHHH
Q 041643 245 VLGVPIIVSVLGEAP-VKVQVAVANLVA 271 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~-~~vq~~Aa~aL~ 271 (576)
..+++.|.+++.+.+ ..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 338999999997754 567888888875
No 60
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.21 E-value=0.013 Score=61.56 Aligned_cols=186 Identities=27% Similarity=0.356 Sum_probs=130.9
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q 041643 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEE 283 (576)
Q Consensus 204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~ 283 (576)
..++.++++|.+.+ ..++..|+++|+.+.. .+ ++|.+.++|.+.+..++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~----~~------av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~----- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS----EE------AVPLLRELLSDEDPRVRDAAADALGELGD--P----- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch----HH------HHHHHHHHhcCCCHHHHHHHHHHHHccCC--h-----
Confidence 57899999999987 9999999999766543 33 78999999999999999999998877652 2
Q ss_pred HHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH
Q 041643 284 FVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363 (576)
Q Consensus 284 i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~ 363 (576)
..+++|+.+|..+ ++. .
T Consensus 105 ----~a~~~li~~l~~d-------------------------------------------------------~~~----~ 121 (335)
T COG1413 105 ----EAVPPLVELLEND-------------------------------------------------------ENE----G 121 (335)
T ss_pred ----hHHHHHHHHHHcC-------------------------------------------------------CcH----h
Confidence 3579999999631 011 1
Q ss_pred HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC---------Ch--hhHHHHHHHHH
Q 041643 364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES---------DA--MLQTPAIRSIG 432 (576)
Q Consensus 364 ~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~---------~~--~lq~~a~~aLg 432 (576)
++..|+++|..+-.. ..++.|+..+.+.. .+ .++..++.+++
T Consensus 122 vR~~aa~aL~~~~~~---------------------------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 122 VRAAAARALGKLGDE---------------------------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred HHHHHHHHHHhcCch---------------------------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 346778888766321 12445555554322 01 35566777777
Q ss_pred HHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHH
Q 041643 433 CLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLV 511 (576)
Q Consensus 433 nLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~ 511 (576)
.+- +...+++|...|+..+..|+..|+.+|+.+.... ....+.+...+...+. ++..++.
T Consensus 175 ~~~------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------------~~~~~~l~~~~~~~~~~vr~~~~~ 235 (335)
T COG1413 175 ELG------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------------VEAADLLVKALSDESLEVRKAALL 235 (335)
T ss_pred HcC------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------------hhHHHHHHHHhcCCCHHHHHHHHH
Confidence 763 4567999999999999999999999999886421 2344666677766655 6666666
Q ss_pred HHHHH
Q 041643 512 FLCYL 516 (576)
Q Consensus 512 ~L~~l 516 (576)
+|.++
T Consensus 236 ~l~~~ 240 (335)
T COG1413 236 ALGEI 240 (335)
T ss_pred Hhccc
Confidence 66555
No 61
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.20 E-value=0.027 Score=60.40 Aligned_cols=285 Identities=17% Similarity=0.129 Sum_probs=166.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCC-HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL 246 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~Gg-IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G 246 (576)
+.+|..++.-.-..+++.+.-++...... ..-.+-.. -.-|-.+|.++++++.-.-|+++|..+...++.|-..+.+.
T Consensus 120 l~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~ad 198 (442)
T KOG2759|consen 120 LNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIAD 198 (442)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecC
Confidence 56777777666666777777777543221 11101111 23445566665547777889999999999999999999999
Q ss_pred CHHHHHHhhcC--CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643 247 GVPIIVSVLGE--APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE 324 (576)
Q Consensus 247 avp~LV~lL~s--~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~ 324 (576)
++..++..|.+ ....+|.+...++.-|..+.+-+ +.+...+.|+.|+.+++..+.. .+. ..-+.. -.+
T Consensus 199 g~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KE----KV~-Rivlai----~~N 268 (442)
T KOG2759|consen 199 GVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKE----KVT-RIVLAI----FRN 268 (442)
T ss_pred cchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHH----HHH-HHHHHH----HHH
Confidence 99999999943 45788999999999999765544 6668889999999999765310 011 000000 000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH-----HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643 325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK-----VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT 399 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~-----~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~ 399 (576)
. ++ + .+|.+++-+ ++..+-.++-.|....= ++.||+..
T Consensus 269 l--------------------l~---k---~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky-------sDEDL~~d---- 311 (442)
T KOG2759|consen 269 L--------------------LD---K---GPDRETKKDIASQMVLCKVLKTLQSLEERKY-------SDEDLVDD---- 311 (442)
T ss_pred H--------------------hc---c---CchhhHHHHHHHHHHhcCchHHHHHHHhcCC-------CcHHHHHH----
Confidence 0 00 0 012222200 00111222222221100 01233321
Q ss_pred CchhHHHHHHHHHHHhhhcCChhhHHHHHH-------HHHHHhcCCc---------------hhhhCcHHHHHHhhcCCC
Q 041643 400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIR-------SIGCLAKTFP---------------AKEKRMIGPLVALLSNRN 457 (576)
Q Consensus 400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~-------aLgnLa~~~~---------------~~~~~~I~~LV~LL~~~~ 457 (576)
++.|-.-|.+ .+|.-+.. --|.|.=... +.+-.++.-|+++|...+
T Consensus 312 --------i~~L~e~L~~----svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~ 379 (442)
T KOG2759|consen 312 --------IEFLTEKLKN----SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN 379 (442)
T ss_pred --------HHHHHHHHHH----HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC
Confidence 2222222211 11110000 0011110000 001136788999997654
Q ss_pred -HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643 458 -VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYL 516 (576)
Q Consensus 458 -~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l 516 (576)
+.+..-|+.=|+.+.- .+|+-+..|.+-||=..+++||.+.|+ |..+|+.++-.|
T Consensus 380 Dp~iL~VAc~DIge~Vr----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVR----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred CCceeehhhhhHHHHHH----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 7777789999999973 247888899999999999999999988 998888877544
No 62
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.011 Score=70.00 Aligned_cols=174 Identities=25% Similarity=0.284 Sum_probs=115.4
Q ss_pred HHHHHH----HHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC-hH
Q 041643 206 ILPLLK----LLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD-SI 279 (576)
Q Consensus 206 IppLV~----LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~-~~ 279 (576)
.||++. +|.+.+ ..-++.|..||.-++... +.-.... --.++..+..|+++++.||..|..+++.++.+- |+
T Consensus 346 ~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTE-WKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 566655 455666 777788888888887743 2222211 235677778889999999999999999999763 33
Q ss_pred HHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHH
Q 041643 280 AQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPE 359 (576)
Q Consensus 280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~ 359 (576)
.+ .-..+-.+|.|+..+.+.- .+
T Consensus 424 iq-k~~~e~l~~aL~~~ld~~~-------------------------------------------------------~~- 446 (1075)
T KOG2171|consen 424 IQ-KKHHERLPPALIALLDSTQ-------------------------------------------------------NV- 446 (1075)
T ss_pred HH-HHHHHhccHHHHHHhcccC-------------------------------------------------------ch-
Confidence 33 2333456667777774320 11
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643 360 VKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP 439 (576)
Q Consensus 360 vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~ 439 (576)
.++.+|+-||-+++..+.+. .+- |.-..+++.++.+|..+.++.+|+.++.+||..|..-.
T Consensus 447 ---rV~ahAa~al~nf~E~~~~~--------~l~--------pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 447 ---RVQAHAAAALVNFSEECDKS--------ILE--------PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred ---HHHHHHHHHHHHHHHhCcHH--------HHH--------HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 15678999999998776543 121 23345666444455444558999999999999986332
Q ss_pred hh----hhCcHHHHHHhhcCCC
Q 041643 440 AK----EKRMIGPLVALLSNRN 457 (576)
Q Consensus 440 ~~----~~~~I~~LV~LL~~~~ 457 (576)
.. -.+.+|.|.+.|.+.+
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCC
Confidence 21 2357899999997766
No 63
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.06 E-value=0.031 Score=62.80 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=70.9
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH
Q 041643 202 EEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA 280 (576)
Q Consensus 202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~ 280 (576)
...++.|||++|..+. ..++..+..||.||.. .+.-+..+++.|+|..+..++.+.+..++..+.|+|.++..++.+-
T Consensus 417 ~~dv~~plvqll~dp~-~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPE-IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred cchhHHHHHHHhhCcc-hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 4568999999998888 8999999999999998 4788999999999999999999999999999999999999876544
Q ss_pred H
Q 041643 281 Q 281 (576)
Q Consensus 281 r 281 (576)
+
T Consensus 496 ~ 496 (678)
T KOG1293|consen 496 E 496 (678)
T ss_pred H
Confidence 3
No 64
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0038 Score=71.40 Aligned_cols=138 Identities=19% Similarity=0.166 Sum_probs=112.6
Q ss_pred hHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc
Q 041643 159 PILAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE 237 (576)
Q Consensus 159 ~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~ 237 (576)
|+..+|-.+|++|+.. +.+....|+++|.+|+..-++....++++|+||.|+.=|..=...++-|.+..||-.|+. +
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~ 285 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--R 285 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--h
Confidence 4566777789999987 789999999999999988888899999999999999877665548899999999999987 4
Q ss_pred hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccc
Q 041643 238 TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 238 ~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~ 300 (576)
.-++|.++|++...+.+|.-=+..+|..|..+.+|++.. .++.=..++ .++|.|-.+|...
T Consensus 286 H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~ 347 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQ 347 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhc
Confidence 557899999999999888766678899999999998863 122222333 4789999999764
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.61 Score=53.89 Aligned_cols=316 Identities=17% Similarity=0.196 Sum_probs=185.1
Q ss_pred CCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 041643 150 SLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANAL 229 (576)
Q Consensus 150 ~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL 229 (576)
.+..|.+.|=++.+.-+...+|+..++-.|.+|+-++..+-+..++ -..+ -+++.-++|.+.+ .-+-..+..-+
T Consensus 130 alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e~----f~~~~~~lL~ek~-hGVL~~~l~l~ 203 (866)
T KOG1062|consen 130 ALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD-LVEH----FVIAFRKLLCEKH-HGVLIAGLHLI 203 (866)
T ss_pred HhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-HHHH----hhHHHHHHHhhcC-CceeeeHHHHH
Confidence 4556777777777777767788998999999998888777665333 2222 4678888887766 55555556666
Q ss_pred HHhhc-CCchHHHHHHcCCHHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhH
Q 041643 230 FNIAT-DQETVRFIVDVLGVPIIVSVLGE---------------APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSL 293 (576)
Q Consensus 230 ~nLa~-~~~~~~~iv~~Gavp~LV~lL~s---------------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~L 293 (576)
+.|+. +++.-...-+ .++-||..|+. .++-+|.+....|.-|-.++++.-+.+-. .|
T Consensus 204 ~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iL 276 (866)
T KOG1062|consen 204 TELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----IL 276 (866)
T ss_pred HHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Confidence 77776 3444333322 67778877741 34568888888888787777666654431 22
Q ss_pred HHhhccccccCCCcchhhhh---HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHH
Q 041643 294 ISLLCMDIALDLPKPESAKT---TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAE 370 (576)
Q Consensus 294 V~LL~~~t~~~~~~~i~~~~---si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ 370 (576)
-+... .| +-++++.+.. +++++.+...+ + .+++-|+.
T Consensus 277 aqvat-nt--dsskN~GnAILYE~V~TI~~I~~~---------------------------------~----~Lrvlain 316 (866)
T KOG1062|consen 277 AQVAT-NT--DSSKNAGNAILYECVRTIMDIRSN---------------------------------S----GLRVLAIN 316 (866)
T ss_pred HHHHh-cc--cccccchhHHHHHHHHHHHhccCC---------------------------------c----hHHHHHHH
Confidence 23332 22 1222222111 33333222221 1 13345666
Q ss_pred HHHHhhcCCcccc----------------------------hhcccchHHHHhhh-----ccCchhHHHHHHHHHHHhhh
Q 041643 371 ALWKLSKGCLLSL----------------------------WSAESNAELRRSAF-----KTNSPAAKAVLDQLLRLIHE 417 (576)
Q Consensus 371 ALw~La~g~~~~I----------------------------avae~~~~lrr~a~-----k~~s~a~~~vV~~Ll~lL~~ 417 (576)
.|.++-.+.+.|| ++-+.+.-+||-++ ..|+.-....|..|+.+|.+
T Consensus 317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~ 396 (866)
T KOG1062|consen 317 ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLES 396 (866)
T ss_pred HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Confidence 6666554444442 33334445566453 24444456788899999998
Q ss_pred cCChhhHHHHHHHHHHHhcCCch-h----h--------------hCcHHHHHHhhcCC----------------------
Q 041643 418 ESDAMLQTPAIRSIGCLAKTFPA-K----E--------------KRMIGPLVALLSNR---------------------- 456 (576)
Q Consensus 418 ~~~~~lq~~a~~aLgnLa~~~~~-~----~--------------~~~I~~LV~LL~~~---------------------- 456 (576)
.+ +++...+..-|..++..|.- . + ..++..|++++.++
T Consensus 397 ~d-~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~ 475 (866)
T KOG1062|consen 397 SD-EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLL 475 (866)
T ss_pred cc-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhh
Confidence 75 88999999999999876531 0 0 11345555555444
Q ss_pred ---CHHHHHHHHHHHHhhc----CCCCCCCHHHHHHHHHCCCcHhHHHhhccC--hh-HHHHHHHHHHHHhcccCc
Q 041643 457 ---NVDVATEAVIALSKFV----SPDNFNRSEHSKAIIEFDGVPPLMRLLKIS--DR-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 457 ---~~~V~~eAa~AL~nla----~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~--d~-vq~~A~~~L~~lal~~~~ 522 (576)
.+...+-|+|+|+... .+.| .+.-..+-+...+..|..++.+. +. ++-+|+.+|..|+.....
T Consensus 476 ~is~e~l~qVa~W~IGEYGdlll~~~~---~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s 548 (866)
T KOG1062|consen 476 DISQEPLLQVASWCIGEYGDLLLDGAN---EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS 548 (866)
T ss_pred hhhhhhHHHHHHHHhhhhhHHhhcCcc---ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc
Confidence 3345566888888543 2111 01111233345677788888643 34 677899999888765554
No 66
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.80 E-value=0.0018 Score=49.80 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643 422 MLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVIALSKF 471 (576)
Q Consensus 422 ~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nl 471 (576)
.++..|+.+||+++...+.. ...++|.|+.+|++.+.+|+..|+|||+++
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46778999999988655432 235789999999999999999999999975
No 67
>PF05536 Neurochondrin: Neurochondrin
Probab=96.46 E-value=0.025 Score=63.95 Aligned_cols=134 Identities=13% Similarity=0.197 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCccc---HHHHHhcCCHHHHHHHHccCCC------hHHHHHHHHHHHHhhc
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRN---RKIIVEEGGILPLLKLLKEAAS------PDAQTAAANALFNIAT 234 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~---~~~I~~~GgIppLV~LL~~g~~------~~~q~~AA~AL~nLa~ 234 (576)
+..-+.+|+..+++.|.-+..-+..+...++.+ ++.|.++=|..-|=+||+++.. ...+.-|...|...+.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 345578999999999998888888888765532 4568888888889999998532 3445677777777777
Q ss_pred CCchH--HHHHHcCCHHHHHHhhcCCCh-hHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643 235 DQETV--RFIVDVLGVPIIVSVLGEAPV-KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 235 ~~~~~--~~iv~~Gavp~LV~lL~s~~~-~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~ 300 (576)
+++.. ..++ +-||.|++++.+++. ++...+..+|..+++ .++.++.+.+.|+|+.|++.+.+.
T Consensus 87 ~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~ 152 (543)
T PF05536_consen 87 DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQ 152 (543)
T ss_pred ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhC
Confidence 66543 4454 469999999988776 899999999999995 578899999999999999998764
No 68
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.43 E-value=0.011 Score=54.50 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=84.4
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q 041643 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEE 283 (576)
Q Consensus 204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~ 283 (576)
|-+..||.=..+.++.+.|+.-..-|.|-+-+|-|-..+.+..++..||+-|..+++.+.+.+.+.|+|++. ++.+..-
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHH
Confidence 345667776677666899998888889999999999999999999999999999999999999999999996 4678889
Q ss_pred HHhcCCchhHHHhhccc
Q 041643 284 FVRENVTRSLISLLCMD 300 (576)
Q Consensus 284 i~~~g~I~~LV~LL~~~ 300 (576)
|.+.++||..+..|++.
T Consensus 95 I~ea~g~plii~~lssp 111 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP 111 (173)
T ss_pred HHHhcCCceEEeecCCC
Confidence 99999999999988764
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.77 Score=53.08 Aligned_cols=276 Identities=14% Similarity=0.111 Sum_probs=155.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVL 246 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~G 246 (576)
..-|++++.-..--|..+|++++. ++-... .-|-..+||+..+ +-+++.|+-|+..+-. .++..+-
T Consensus 113 knDL~s~nq~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~----- 179 (866)
T KOG1062|consen 113 KNDLNSSNQYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEH----- 179 (866)
T ss_pred HhhccCCCeeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHH-----
Confidence 334455544444568888998875 333222 2355566888888 9999999999988766 4444442
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643 247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT 326 (576)
Q Consensus 247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~ 326 (576)
-++.+.++|.+.+..|-..+...+..|+..+++.-..+.+ .++.||..|+.=+--.++
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~ys-------------------- 237 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYS-------------------- 237 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCC--------------------
Confidence 4678888998887777777777788888877766666665 788888888632100011
Q ss_pred ccccccCCCCCCCCCCCCCCCC-c--------ccccccCCHHHHHHHHHHHHHHHHHhhcC-----Cccc---------c
Q 041643 327 EKSTNVTNNSDGSSRGGHGQHY-N--------KKDRELETPEVKAKVRIACAEALWKLSKG-----CLLS---------L 383 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~-~--------~~~~e~~d~~vk~~~k~~Aa~ALw~La~g-----~~~~---------I 383 (576)
|... -+|++- . .+.....|+... ..-..-|...+.+ |.+| |
T Consensus 238 ----------peyd--v~gi~dPFLQi~iLrlLriLGq~d~daS----d~M~DiLaqvatntdsskN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 238 ----------PEYD--VHGISDPFLQIRILRLLRILGQNDADAS----DLMNDILAQVATNTDSSKNAGNAILYECVRTI 301 (866)
T ss_pred ----------CccC--ccCCCchHHHHHHHHHHHHhcCCCccHH----HHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 0000 012220 0 001111222221 1223334444432 1111 1
Q ss_pred hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHH
Q 041643 384 WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATE 463 (576)
Q Consensus 384 avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~e 463 (576)
.-++.++.||- ..++-|-++|.+.| -.+++-|+..|.......+..-.+==..+++.|++.+..+++.
T Consensus 302 ~~I~~~~~Lrv-----------lainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrr 369 (866)
T KOG1062|consen 302 MDIRSNSGLRV-----------LAINILGKFLLNRD-NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRR 369 (866)
T ss_pred HhccCCchHHH-----------HHHHHHHHHhcCCc-cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 22233334443 34566667776654 5667777777777765444322222356888899999999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 464 AVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 464 Aa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
|-.-+..+.-. .+.+.|++ -|+..|...|+ .+..-+.-+|.++
T Consensus 370 alELs~~lvn~------~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 370 ALELSYALVNE------SNVRVMVK-----ELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred HHHHHHHHhcc------ccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 88887777533 23455543 35555555554 4444333333343
No 70
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.24 E-value=0.017 Score=50.77 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHcc-CCChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643 179 RVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKE-AASPDAQTAAANALFNIAT-DQETVRFIVD 244 (576)
Q Consensus 179 k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~-g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~ 244 (576)
|..-.+.|++|+..++.++..|.+.||||.++..-.- +.+|-.++.|.+|+.||.. +++|++.|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5566778999999999999999999999999996542 2339999999999999998 5677775553
No 71
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=2.9 Score=49.92 Aligned_cols=342 Identities=13% Similarity=0.122 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhhcCcccHHHH----HhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh
Q 041643 180 VDAANELASLARDNNRNRKII----VEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL 255 (576)
Q Consensus 180 ~~AA~~L~~La~~~~~~~~~I----~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL 255 (576)
+.+..+|.||-+.+++-.... .=.|-.+.+..+|...+.+..|.-|...+..++.+.+-...|++.|.+..|..+|
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 456677888887776432211 1236788888888877658999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccccccc-ccCC
Q 041643 256 GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKST-NVTN 334 (576)
Q Consensus 256 ~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~-~~~~ 334 (576)
.+.+ ..++.+..+|..|++.. +.-.+-.++|++..+.+++-..+ +.-.-+...++-.-..+......... ....
T Consensus 1823 HS~P-S~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~---~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1823 HSQP-SMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTN---SDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred hcCh-HHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccC---cHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 8764 66788999999999764 55556667788777777764332 11000011122111111111100000 0000
Q ss_pred CCCC-C-CCCCCCCCCc--ccccccCCHHHH------HH----HHHHHHHHHHHhhcCCccc--c--------------h
Q 041643 335 NSDG-S-SRGGHGQHYN--KKDRELETPEVK------AK----VRIACAEALWKLSKGCLLS--L--------------W 384 (576)
Q Consensus 335 ~~~~-~-~~~~~g~~~~--~~~~e~~d~~vk------~~----~k~~Aa~ALw~La~g~~~~--I--------------a 384 (576)
..|. + +....|-+.. .-.+..|.||.- +. +.+++..---+=-+|+.-+ . +
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 0110 0 0000000000 000111222211 00 0011111000000111000 0 1
Q ss_pred hcccchHHHHhhhccCchh------HHHHHHHHHHHhhhcCChhhHHH--HHHHHHHHhcCCchh-----hhCcHHHHHH
Q 041643 385 SAESNAELRRSAFKTNSPA------AKAVLDQLLRLIHEESDAMLQTP--AIRSIGCLAKTFPAK-----EKRMIGPLVA 451 (576)
Q Consensus 385 vae~~~~lrr~a~k~~s~a------~~~vV~~Ll~lL~~~~~~~lq~~--a~~aLgnLa~~~~~~-----~~~~I~~LV~ 451 (576)
|- |--+|+-...|..|. -.+++++++.++.... +...++ -..|+-+|.+..++- .-|-+|.++.
T Consensus 1978 VG--G~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~-peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1978 VG--GSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPT-PEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred cc--hhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCC-cccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 11 112333111111111 1355677777775433 322222 234566777666553 2367899999
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcccCchHHHH----
Q 041643 452 LLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALE---- 527 (576)
Q Consensus 452 LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~~~~~~~l~---- 527 (576)
.+...+..+-+.|.+.|-.++.++ .| .+++..-.++.+++.++...-..---|+.+|-.+-. .+..+++
T Consensus 2055 Am~~~n~s~P~SaiRVlH~Lsen~--~C---~~AMA~l~~i~~~m~~mkK~~~~~GLA~EalkR~~~--r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSENQ--FC---CDAMAQLPCIDGIMKSMKKQPSLMGLAAEALKRLMK--RNTGELVAQML 2127 (2235)
T ss_pred HHHhcCCcCcHHHHHHHHHHhhcc--HH---HHHHhccccchhhHHHHHhcchHHHHHHHHHHHHHH--HhHHHHHHHHh
Confidence 886666666688999999887543 23 678888888889999887543322246666666632 3444433
Q ss_pred hccchhhHh
Q 041643 528 QARALNALE 536 (576)
Q Consensus 528 ~~~~l~~Le 536 (576)
+.|.+|.|.
T Consensus 2128 K~gLvpyLL 2136 (2235)
T KOG1789|consen 2128 KCGLVPYLL 2136 (2235)
T ss_pred ccCcHHHHH
Confidence 467777765
No 72
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.01 E-value=0.034 Score=48.89 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhc--CCChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 041643 222 QTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLG--EAPVKVQVAVANLVARMAELDSIAQEEFVREN 288 (576)
Q Consensus 222 q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~--s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g 288 (576)
+..-.+.|+||+. +++++..+.+.|+||.+..... ..++-+++.|.+++-||..+++++|+.|++-.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 4456778999998 5788899999999999999874 35688999999999999999999999888654
No 73
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.21 Score=58.99 Aligned_cols=223 Identities=19% Similarity=0.242 Sum_probs=140.2
Q ss_pred HHHHHHHHHHhhcCCch----HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643 222 QTAAANALFNIATDQET----VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297 (576)
Q Consensus 222 q~~AA~AL~nLa~~~~~----~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL 297 (576)
|..=.+||.-|+..-|- ...-..-|..|..++||++...+++-.-+..=+.|-+.++.||..+.++++=...++.|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 44556677777764332 23334679999999999999888887766666666667899999999888766555555
Q ss_pred ccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc
Q 041643 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK 377 (576)
Q Consensus 298 ~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~ 377 (576)
..++ .+ ++ +.|.+||..|.-+.+
T Consensus 564 ~~~~-------------------------------------------~~----------~~----EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 564 DPSQ-------------------------------------------AI----------PP----EQRTMAAFVLAVIVR 586 (1387)
T ss_pred cCcC-------------------------------------------CC----------CH----HHHHHHHHHHHHHHc
Confidence 3210 11 22 357899999999987
Q ss_pred CCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHh
Q 041643 378 GCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVAL 452 (576)
Q Consensus 378 g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~L 452 (576)
|-.- + +.+.+ .++++...+..+.+...+-+..=++-+||.|=.++.. .+.++...|+.+
T Consensus 587 nf~l-------G---Q~acl------~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 587 NFKL-------G---QKACL------NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred ccch-------h---HHHhc------cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 6321 0 11111 1245555666665532244555566688888666653 234567899999
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH------------HHCCCc---HhHHHhhccChh-HHHHHHHHHHHH
Q 041643 453 LSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI------------IEFDGV---PPLMRLLKISDR-AQVHGLVFLCYL 516 (576)
Q Consensus 453 L~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I------------v~~ggi---~~Lv~LL~~~d~-vq~~A~~~L~~l 516 (576)
|+..-++|+..|..||+.|..++....+++...+ +|.-.+ -.|+.++..+++ +..+-..+|...
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999999999764311011211111 222222 267777777777 665555545444
Q ss_pred h
Q 041643 517 A 517 (576)
Q Consensus 517 a 517 (576)
.
T Consensus 731 ~ 731 (1387)
T KOG1517|consen 731 V 731 (1387)
T ss_pred H
Confidence 3
No 74
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=1.3 Score=46.35 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=86.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHH-hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIV-EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD 244 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~-~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~ 244 (576)
+++..|.+-++..|..|...+..|... ..+..-- +.-.++.|.+|++... + -+.||+||.|++.+.+-++.+..
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 457888999999999999889888764 2222211 2334788999987655 4 66899999999999999998887
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643 245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~ 286 (576)
. -+..++..+-++....-...+..|.|++..+..+......
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~ 122 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTN 122 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHh
Confidence 7 7777777776665556667788899999987777655443
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.84 Score=52.25 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=101.9
Q ss_pred CCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHH
Q 041643 150 SLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANAL 229 (576)
Q Consensus 150 ~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL 229 (576)
|+..+...|-.+-+..+.+.+|.+..+=.|..|.-.|+.+-- .|-+.+ ...+|.|++=|++++ |.+|-.|+..+
T Consensus 132 GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFL---kYPeAl--r~~FprL~EkLeDpD-p~V~SAAV~VI 205 (877)
T KOG1059|consen 132 GLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFL---KYPEAL--RPCFPRLVEKLEDPD-PSVVSAAVSVI 205 (877)
T ss_pred ccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---hhhHhH--hhhHHHHHHhccCCC-chHHHHHHHHH
Confidence 566667677778888899999999988889888877776543 344555 347899999999999 99999999999
Q ss_pred HHhhc-CCchHHHHHHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643 230 FNIAT-DQETVRFIVDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 230 ~nLa~-~~~~~~~iv~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~ 300 (576)
+.||. +|.|--.+ -|.|.++|-+ .+.-+-....-..++|+--.|.... ..|+||.+|+.+.
T Consensus 206 CELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT 268 (877)
T KOG1059|consen 206 CELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMEST 268 (877)
T ss_pred HHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhh
Confidence 99998 77776533 4889999954 4444555555666677766665433 5689999999753
No 76
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=2.8 Score=48.15 Aligned_cols=277 Identities=17% Similarity=0.168 Sum_probs=158.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC-hHHHHHHHHHHHHhhcCCchHHH
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS-PDAQTAAANALFNIATDQETVRF 241 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~-~~~q~~AA~AL~nLa~~~~~~~~ 241 (576)
.+...-.-|.+-++-...-|..++++.-. .+++.... ..|| +||.+|++ +-+++.||-+|..|=+..+ .
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp---D 181 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP---D 181 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc---c
Confidence 33333335556666666777777877653 34555542 3566 77888754 5688899999998877422 2
Q ss_pred HHHc-CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc-----cccc-cCCCcc-hh--h
Q 041643 242 IVDV-LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC-----MDIA-LDLPKP-ES--A 311 (576)
Q Consensus 242 iv~~-Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~-----~~t~-~~~~~~-i~--~ 311 (576)
++.- +-...++++|.+.++.|...+...+-.|+...|+.. .+.+++-|.-|. .+|. +++-.+ ++ |
T Consensus 182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-----hhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 2323 347889999999999988888888888887665543 256677666554 2222 222221 11 2
Q ss_pred hhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc---------
Q 041643 312 KTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS--------- 382 (576)
Q Consensus 312 ~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~--------- 382 (576)
.. . .+++.... .|. -+|+.+|..+- .+-.-+-+.+...+..
T Consensus 257 L~-v-Kl~rlLq~---------------------~p~------~~D~~~r~~l~-evl~~iLnk~~~~~~~k~vq~~na~ 306 (938)
T KOG1077|consen 257 LQ-V-KLLRLLQI---------------------YPT------PEDPSTRARLN-EVLERILNKAQEPPKSKKVQHSNAK 306 (938)
T ss_pred HH-H-HHHHHHHh---------------------CCC------CCCchHHHHHH-HHHHHHHhccccCccccchHhhhhH
Confidence 11 0 00111100 000 13444443322 1223333333211111
Q ss_pred -------c---hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhh--CcHHHHH
Q 041643 383 -------L---WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEK--RMIGPLV 450 (576)
Q Consensus 383 -------I---avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~--~~I~~LV 450 (576)
| .-.+..++ +....+.+|-.+|.+.+ +.+.+-|+..+..|+......+. .-...++
T Consensus 307 naVLFeaI~l~~h~D~e~~-----------ll~~~~~~Lg~fls~rE-~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii 374 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPE-----------LLSRAVNQLGQFLSHRE-TNIRYLALESMCKLASSEFSIDAVKKHQDTII 374 (938)
T ss_pred HHHHHHHHHHHHHcCCcHH-----------HHHHHHHHHHHHhhccc-ccchhhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 0 00111111 12235677778887655 67788888888888765433221 2256788
Q ss_pred Hhhc-CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHH
Q 041643 451 ALLS-NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQV 507 (576)
Q Consensus 451 ~LL~-~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~ 507 (576)
+.|+ .++..|++.|+--|.-||.- ++.+.|++ -|.+.|.+.|. ++.
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~------~Nak~IV~-----elLqYL~tAd~sire 422 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDV------SNAKQIVA-----ELLQYLETADYSIRE 422 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhch------hhHHHHHH-----HHHHHHhhcchHHHH
Confidence 8898 88999999999999999753 44677765 46777777765 543
No 77
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.66 Score=53.39 Aligned_cols=71 Identities=20% Similarity=0.177 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC
Q 041643 162 AWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ 236 (576)
Q Consensus 162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~ 236 (576)
-+...+...++.+++..|..|+....++=. .+.+...+.|-++.|-.++.+.+ +.+-.+|..||..|...+
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhC
Confidence 344555778888899999999988887743 35577778888999999999777 899999999999998743
No 78
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.24 Score=56.82 Aligned_cols=281 Identities=17% Similarity=0.131 Sum_probs=159.0
Q ss_pred hcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHH
Q 041643 172 QMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPII 251 (576)
Q Consensus 172 ~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~L 251 (576)
...++..|.-|.++++.+-. +..... .+.||.+.|++++ +-.++.|+....++ +..+.+.....|-++.|
T Consensus 96 ~d~np~iR~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L 165 (734)
T KOG1061|consen 96 EDPNPLIRALALRTMGCLRV--DKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKL--FDIDPDLVEDSGLVDAL 165 (734)
T ss_pred CCCCHHHHHHHhhceeeEee--hHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHh--hcCChhhccccchhHHH
Confidence 34456667777777776533 222222 4689999999999 99999998888777 55677778889999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHH----hhccccccCCCcchhhhh-HHHHHHhhhcccc
Q 041643 252 VSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLIS----LLCMDIALDLPKPESAKT-TIHSLVQMKKEMT 326 (576)
Q Consensus 252 V~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~----LL~~~t~~~~~~~i~~~~-si~~~v~~~~~~~ 326 (576)
-+++.+.++.|..+|..+|..+...++..- -...+++++. -|...+ + |.. .+-. .
T Consensus 166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~----~~~l~~~~~~~lL~al~ec~--E------W~qi~IL~-----~--- 225 (734)
T KOG1061|consen 166 KDLLSDSNPMVVANALAALSEIHESHPSVN----LLELNPQLINKLLEALNECT--E------WGQIFILD-----C--- 225 (734)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHhCCCCC----cccccHHHHHHHHHHHHHhh--h------hhHHHHHH-----H---
Confidence 999998888899999999999987665310 1122333333 222111 0 100 0000 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccccC-CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc---h
Q 041643 327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELE-TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS---P 402 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~-d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s---~ 402 (576)
..++.. |+. +....+-+..-.|-..|...+ ......+++..+..+. .
T Consensus 226 ------------------------l~~y~p~d~~---ea~~i~~r~~p~Lqh~n~avv--lsavKv~l~~~~~~~~~~~~ 276 (734)
T KOG1061|consen 226 ------------------------LAEYVPKDSR---EAEDICERLTPRLQHANSAVV--LSAVKVILQLVKYLKQVNEL 276 (734)
T ss_pred ------------------------HHhcCCCCch---hHHHHHHHhhhhhccCCcceE--eehHHHHHHHHHHHHHHHHH
Confidence 000000 110 112345555555655554431 1111122332222211 2
Q ss_pred hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-------------------hh-----------CcHHHHHHh
Q 041643 403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-------------------EK-----------RMIGPLVAL 452 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-------------------~~-----------~~I~~LV~L 452 (576)
..+.+-++|+.++... +++|.-+++-+.-+....+.. .+ .-++.++.=
T Consensus 277 ~~~K~~~pl~tlls~~--~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~E 354 (734)
T KOG1061|consen 277 LFKKVAPPLVTLLSSE--SEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAE 354 (734)
T ss_pred HHHHhcccceeeeccc--chhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3344556677777654 377888887776664422210 00 012222222
Q ss_pred h----cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643 453 L----SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS 523 (576)
Q Consensus 453 L----~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~ 523 (576)
| ..-+.+..++|.+||+++|..- +. ..++|+.|.+|++..-. +--.+...++.+..+.|+.
T Consensus 355 l~eYatevD~~fvrkaIraig~~aik~-----e~-----~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 355 LKEYATEVDVDFVRKAVRAIGRLAIKA-----EQ-----SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHhhhhhCHHHHHHHHHHhhhhhhhh-----hh-----hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 2 3456778889999999998521 21 27899999999997644 3334555566665555654
No 79
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1.4 Score=51.09 Aligned_cols=218 Identities=18% Similarity=0.187 Sum_probs=140.8
Q ss_pred CHHHHHHhhcCCC-hhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643 247 GVPIIVSVLGEAP-VKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM 325 (576)
Q Consensus 247 avp~LV~lL~s~~-~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~ 325 (576)
-|+.|++-+.+.+ .+=+..|+.+|-.++. ++|..++..| ++||++.|..+-
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~------------------------ 74 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDY------------------------ 74 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhcc------------------------
Confidence 4677787776554 5567889999998884 7899998877 599999996541
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc------chhcccchHHHHhhhcc
Q 041643 326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS------LWSAESNAELRRSAFKT 399 (576)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~------Iavae~~~~lrr~a~k~ 399 (576)
.||+.. ..+...|..+....+.- -.+.+.|..+-. .|..
T Consensus 75 ------------------------------~D~E~i----k~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae-~fik 119 (970)
T KOG0946|consen 75 ------------------------------MDPEII----KYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAE-QFIK 119 (970)
T ss_pred ------------------------------CCHHHH----HHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHH-HHHc
Confidence 233211 12333333332211100 000000111111 1222
Q ss_pred CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-------hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-------EKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-------~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
+ ++.|..|+.+++.-| --+..+++.-|.++-++-+-. -.-+|..|+.+|+..-+.|+-+|..-|+.+.
T Consensus 120 ~----qd~I~lll~~~e~~D-F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 120 N----QDNITLLLQSLEEFD-FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred C----chhHHHHHHHHHhhc-hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence 1 356778888887644 778888988888886543311 1136899999998888889999999999886
Q ss_pred CCCCCCCHHHHHHHHHCCCcHhHHHhhccC---hh--HHHHHHHHHHHHhc-ccCchHHHHhccchhhHh
Q 041643 473 SPDNFNRSEHSKAIIEFDGVPPLMRLLKIS---DR--AQVHGLVFLCYLAL-SAGNSKALEQARALNALE 536 (576)
Q Consensus 473 ~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~---d~--vq~~A~~~L~~lal-~~~~~~~l~~~~~l~~Le 536 (576)
-+ | +..++.++=+++...|..+++.. |. |-..++.+|-++.. |..|+.-+-+.+.++.|-
T Consensus 195 k~-n---~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~ 260 (970)
T KOG0946|consen 195 KD-N---SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLL 260 (970)
T ss_pred cc-C---chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHH
Confidence 43 3 35566666678999999999742 44 45569999988864 556677777888888886
No 80
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.09 E-value=0.39 Score=53.59 Aligned_cols=349 Identities=13% Similarity=0.105 Sum_probs=173.3
Q ss_pred cHHHHHHHHHhhhcch---HHHhhhcccCccccCCCCCCCcchHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHHhhcCcc
Q 041643 120 DFKKVFSLLESSIGDM---RWLLTIFDSDEVNLSLPPIASNDPILAWVWSFIS-TIQMGQIKSRVDAANELASLARDNNR 195 (576)
Q Consensus 120 ~l~~l~~~L~~~~~~~---~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~-~L~~G~~e~k~~AA~~L~~La~~~~~ 195 (576)
-+|.|+++|+....|. .|-.+.+... -.-+-.-...|-|.-.||.+|. -+++.+-..++.|+.++++.... +
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~s--CLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g--p 397 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASS--CLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG--P 397 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHH--HHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC--c
Confidence 4677777777644332 3433322110 0000001123445556788776 78888888999999999999865 3
Q ss_pred cHHHH--HhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC---CChhHHHHHHHHH
Q 041643 196 NRKII--VEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE---APVKVQVAVANLV 270 (576)
Q Consensus 196 ~~~~I--~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s---~~~~vq~~Aa~aL 270 (576)
+..+. +-..++|-+..++.+.. --++..+|||++.|+.+ ....|-..|-+++.|.-+.- ..+.+-.+..|+.
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~ 474 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRK 474 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHH
Confidence 43332 22457788888776444 77899999999999863 12223345656665554432 2456778889999
Q ss_pred HHHhcCChHHHHH---HHhcCCchhHHHhhccccccCCCcchhhhhHHHH----HHhhhcc--ccccccccCCCCCCCCC
Q 041643 271 ARMAELDSIAQEE---FVRENVTRSLISLLCMDIALDLPKPESAKTTIHS----LVQMKKE--MTEKSTNVTNNSDGSSR 341 (576)
Q Consensus 271 ~~LA~~~~~~r~~---i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~----~v~~~~~--~~~~~~~~~~~~~~~~~ 341 (576)
-|++.+-++.-.. +.. ..-+.++.-|-.+|.+..... ....|..+ ++....- .....+.-......+..
T Consensus 475 ~nlv~h~a~a~~~~~S~l~-~fY~ai~~~Lv~~t~~~~Ne~-n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~ 552 (858)
T COG5215 475 ENLVDHIAKAVREVESFLA-KFYLAILNALVKGTELALNES-NLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE 552 (858)
T ss_pred HhHHHhhhhhhccccchhH-HHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9988654433211 110 111222322212221000000 00111111 1100000 00000000000000000
Q ss_pred CCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCCh
Q 041643 342 GGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDA 421 (576)
Q Consensus 342 ~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~ 421 (576)
.++........+|.....+++.+-...|-.+-+-. .++++ +...-+++.+++++++.+..
T Consensus 553 ---~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~---------~~~ie--------~v~D~lm~Lf~r~les~~~t 612 (858)
T COG5215 553 ---CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR---------RRDIE--------DVEDQLMELFIRILESTKPT 612 (858)
T ss_pred ---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------CCCcc--------cHHHHHHHHHHHHHhccCCc
Confidence 00000000123343333334444444443332110 00111 12334678888899877545
Q ss_pred hhHHHHHHHHHHHhcCCch----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643 422 MLQTPAIRSIGCLAKTFPA----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR 497 (576)
Q Consensus 422 ~lq~~a~~aLgnLa~~~~~----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~ 497 (576)
.+..-...+|++|++.... --..+||-|.+-|+..+-.|...|..-++.++-. +..+.. +....-...|+|
T Consensus 613 ~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant---l~~df~--~y~d~~ms~LvQ 687 (858)
T COG5215 613 TAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT---LGTDFN--IYADVLMSSLVQ 687 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH---hhhhHH--HHHHHHHHHHHH
Confidence 5666677889999864332 1236899999999888888888898888888732 212221 222234456777
Q ss_pred hhccC
Q 041643 498 LLKIS 502 (576)
Q Consensus 498 LL~~~ 502 (576)
.|.++
T Consensus 688 ~lss~ 692 (858)
T COG5215 688 CLSSE 692 (858)
T ss_pred HhcCh
Confidence 77654
No 81
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.12 Score=58.34 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=52.4
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH--HH---cCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 041643 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI--VD---VLGVPIIVSVLGEAPVKVQVAVANLVAR 272 (576)
Q Consensus 204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i--v~---~Gavp~LV~lL~s~~~~vq~~Aa~aL~~ 272 (576)
.++|.|..+|.+.+ ...++.|-.||..+..++...-.- -. .--+|.|.++.+++++..+..|..++-.
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ 200 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence 46899999999988 889999999999999876432100 00 1258999999999999999888776543
No 82
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.75 E-value=0.17 Score=57.77 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----hhh-CcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----KEK-RMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----~~~-~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
|.++++++.|..+|++.. +++|.+|+.-+|.+|...+. ++. ++==.|+++|.+.+.++++.|..+++.++
T Consensus 879 pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred CChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 567889999999998866 89999999999999976654 121 23345899999999999999999988775
No 83
>PF05536 Neurochondrin: Neurochondrin
Probab=94.67 E-value=0.18 Score=57.21 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhhcCcccH--HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHh
Q 041643 177 KSRVDAANELASLARDNNRNR--KIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSV 254 (576)
Q Consensus 177 e~k~~AA~~L~~La~~~~~~~--~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~l 254 (576)
+.+.-|...|..++.+ ++.. ..+ .+-||.|++++.+++.......|..+|..++.+++.++.+++.|+|+.|++.
T Consensus 72 ~~~~LavsvL~~f~~~-~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRD-PELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHcCC-hhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 4455666667777764 3332 233 2479999999998882389999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhcC
Q 041643 255 LGEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 255 L~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
+.++ +...+.|...+.++...
T Consensus 149 ~~~~-~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 149 IPNQ-SFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHhC-cchHHHHHHHHHHHHHh
Confidence 9884 45678888888887754
No 84
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=94.56 E-value=0.17 Score=55.07 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=107.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhhcC-CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHH
Q 041643 353 RELETPEVKAKVRIACAEALWKLSKG-CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSI 431 (576)
Q Consensus 353 ~e~~d~~vk~~~k~~Aa~ALw~La~g-~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aL 431 (576)
+....|++-.+++..|++.|-.+... |.+.| -| .....++.+-....-++++......|
T Consensus 187 rmf~aPn~et~vRve~~rlLEq~~~aeN~d~v---------a~-----------~~~~~Il~lAK~~e~~e~aR~~~~il 246 (832)
T KOG3678|consen 187 RMFQAPNLETSVRVEAARLLEQILVAENRDRV---------AR-----------IGLGVILNLAKEREPVELARSVAGIL 246 (832)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHhhhhhhHH---------hh-----------ccchhhhhhhhhcCcHHHHHHHHHHH
Confidence 33444554456677888888766432 22211 11 11122222222223367788888888
Q ss_pred HHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-H
Q 041643 432 GCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-A 505 (576)
Q Consensus 432 gnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-v 505 (576)
+++-+...+ .++++|..++.-.+-.++.+.+-+|.||+|++-.+ +.+-++.|++.....-|.-|-.+.|+ .
T Consensus 247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~---~~a~qrrmveKr~~EWLF~LA~skDel~ 323 (832)
T KOG3678|consen 247 EHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG---GQAVQRRMVEKRAAEWLFPLAFSKDELL 323 (832)
T ss_pred HHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc---hhHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence 998766554 25577877777777888999999999999999544 35788999999988888888777777 7
Q ss_pred HHHHHHHHHHHhcccCchHHHHhccchhhHh
Q 041643 506 QVHGLVFLCYLALSAGNSKALEQARALNALE 536 (576)
Q Consensus 506 q~~A~~~L~~lal~~~~~~~l~~~~~l~~Le 536 (576)
..+|+.+.|.++.|..-..+..+.|-+...|
T Consensus 324 R~~AClAV~vlat~KE~E~~VrkS~TlaLVE 354 (832)
T KOG3678|consen 324 RLHACLAVAVLATNKEVEREVRKSGTLALVE 354 (832)
T ss_pred HHHHHHHHhhhhhhhhhhHHHhhccchhhhh
Confidence 8889999999976554445555677665444
No 85
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.19 E-value=0.23 Score=55.70 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----hhh-CcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 401 SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----KEK-RMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 401 s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----~~~-~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
-|.+.++++.|..+|++.. .+++.+.+.-+|-++...+. ++. ++-=.||+.|.+.+.+++++|..+++.++
T Consensus 683 qpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred CCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 3567789999999998765 78999999999999987664 111 23345999999999999999999888664
No 86
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.07 E-value=2.2 Score=50.32 Aligned_cols=261 Identities=14% Similarity=0.148 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHHHHhhcCcccH-HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-ch-HHHHHHcCCHHH
Q 041643 174 GQIKSRVDAANELASLARDNNRNR-KIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ET-VRFIVDVLGVPI 250 (576)
Q Consensus 174 G~~e~k~~AA~~L~~La~~~~~~~-~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~-~~~iv~~Gavp~ 250 (576)
|+.-.|.-|+.++..++...-..- ..+. ..++|.|..+|+... ...+.....++-.|..+- ++ ...++++ ++.-
T Consensus 621 ~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~e 697 (1233)
T KOG1824|consen 621 GNEITRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLEA-VLVE 697 (1233)
T ss_pred hchhHHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHH
Confidence 455667777777777665422211 2222 235888888888766 566666666666665531 11 1122221 1222
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccccccc
Q 041643 251 IVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKST 330 (576)
Q Consensus 251 LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~ 330 (576)
+-.|+++.+..+-++|...|..++...|.+- .-...-.++.++.|+++.++|...-... ......+|......-...+
T Consensus 698 l~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~al~~~-l~~f~alV~t~~~~l~y~~ 775 (1233)
T KOG1824|consen 698 LPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGGALSAL-LLFFQALVITKEPDLDYIS 775 (1233)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccccchHHHHH-HHHHHHHHhcCCCCccHHH
Confidence 3333455667778888888998887766553 3344567899999999987543211000 0112222222221100000
Q ss_pred c-cCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHH
Q 041643 331 N-VTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLD 409 (576)
Q Consensus 331 ~-~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~ 409 (576)
. .....|......+|++. +.--.-|.+...|+..... ..+.++.
T Consensus 776 l~s~lt~PV~~~~~~~l~k--------------qa~~siA~cvA~Lt~~~~~---------------------~s~s~a~ 820 (1233)
T KOG1824|consen 776 LLSLLTAPVYEQVTDGLHK--------------QAYYSIAKCVAALTCACPQ---------------------KSKSLAT 820 (1233)
T ss_pred HHHHHcCCcccccccchhH--------------HHHHHHHHHHHHHHHhccc---------------------cchhHHH
Confidence 0 00011222222223332 0000112222222211100 0123444
Q ss_pred HHHHHh-hhcCChhhHHHHHHHHHHHhcCCchhhhCcH-HHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643 410 QLLRLI-HEESDAMLQTPAIRSIGCLAKTFPAKEKRMI-GPLVALLSNRNVDVATEAVIALSKFVSP 474 (576)
Q Consensus 410 ~Ll~lL-~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I-~~LV~LL~~~~~~V~~eAa~AL~nla~~ 474 (576)
.|+.-+ +.+.++.++.-|+-.+|.+-+.........+ ..+++.+++.+++|+..|+.||++++.+
T Consensus 821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg 887 (1233)
T KOG1824|consen 821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG 887 (1233)
T ss_pred HHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC
Confidence 555433 3444567888999999999876554333333 4567889999999999999999999874
No 87
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.95 E-value=3.9 Score=46.23 Aligned_cols=306 Identities=16% Similarity=0.131 Sum_probs=162.9
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 041643 205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEF 284 (576)
Q Consensus 205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i 284 (576)
.|..|+.-|...+ +..|+.-+.+|.-+....+...- .-..+.+.+++.+++..-+..+++.++.+..+. .-..+
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESL 170 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhh
Confidence 4677888888888 99999988998877764433221 114567888888888778888999999988653 33456
Q ss_pred HhcCCchhHHHhhccccccCCCcchhhh-hHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH
Q 041643 285 VRENVTRSLISLLCMDIALDLPKPESAK-TTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363 (576)
Q Consensus 285 ~~~g~I~~LV~LL~~~t~~~~~~~i~~~-~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~ 363 (576)
.+.+.+..|-..+.... +. ... .+.-...... .+.|.+.-|.+... +|.+...-...+++||..
T Consensus 171 ~~~~~l~~l~~ai~dk~----~~--~~re~~~~a~~~~~------~~Lg~~~EPyiv~~---lp~il~~~~d~~~~Vr~A 235 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKK----SA--LNREAALLAFEAAQ------GNLGPPFEPYIVPI---LPSILTNFGDKINKVREA 235 (569)
T ss_pred hhhhHHHHHHHHhcccc----hh--hcHHHHHHHHHHHH------HhcCCCCCchHHhh---HHHHHHHhhccchhhhHH
Confidence 66677777777665331 10 000 0000000000 11222211111110 010000011123444311
Q ss_pred HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch---
Q 041643 364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA--- 440 (576)
Q Consensus 364 ~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~--- 440 (576)
...|+.|+.+.-.. -+.+.+++.++.-+.... =.-...++..+|+++..-+.
T Consensus 236 -a~~a~kai~~~~~~-----------------------~aVK~llpsll~~l~~~k-WrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 236 -AVEAAKAIMRCLSA-----------------------YAVKLLLPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred -HHHHHHHHHHhcCc-----------------------chhhHhhhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHHH
Confidence 12344444332111 123445666554333210 12234566667777643332
Q ss_pred -hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC-CCCCCHHHHHHH---H--------------------------HC
Q 041643 441 -KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP-DNFNRSEHSKAI---I--------------------------EF 489 (576)
Q Consensus 441 -~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~-~n~~~~~~~~~I---v--------------------------~~ 489 (576)
.-..+||.|.+.|-++.++|++.+-.+|.++.+- +| ++.++.+ + ++
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence 1236789999999888999999888888888632 22 2322211 1 12
Q ss_pred CCcHhHHHhhccC----hh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh-hhhcccCCCCCcHHHHHHHHH-HHHH
Q 041643 490 DGVPPLMRLLKIS----DR-AQVHGLVFLCYLALSAGNSKALEQARALNALE-GAARTVLPQHPELRDLFAQAI-YHLT 561 (576)
Q Consensus 490 ggi~~Lv~LL~~~----d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le-~~~~~~~~q~~~~~~l~~~a~-~~l~ 561 (576)
-.+..++-+|+.+ +. +.+.++....|++.-++|...+ +.+++.|- +++.....=.|+.+++..+|+ .+++
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l--apfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL--APFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH--hhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 2334455555433 12 4455666666666556565554 34555554 666554444689999999999 4443
No 88
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=3 Score=49.82 Aligned_cols=206 Identities=22% Similarity=0.215 Sum_probs=140.5
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHH-HhhcCCchHHHHHHcCCHHHHHHhhcC-C--ChhHHHHHHHHHHHHhcCC
Q 041643 202 EEGGILPLLKLLKEAASPDAQTAAANALF-NIATDQETVRFIVDVLGVPIIVSVLGE-A--PVKVQVAVANLVARMAELD 277 (576)
Q Consensus 202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~-nLa~~~~~~~~iv~~Gavp~LV~lL~s-~--~~~vq~~Aa~aL~~LA~~~ 277 (576)
.-|-.|-.++||++.. .+.+--=+..=. -||-++.-...+++.++-..|+.+|.. + +.+.+..||..|+.+..+.
T Consensus 510 sVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred ccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 4588999999999998 787754333333 456677777789999999999999976 3 3588999999999999888
Q ss_pred hHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCC
Q 041643 278 SIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELET 357 (576)
Q Consensus 278 ~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d 357 (576)
+-.|+...+.+.|..=.++|..+
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~--------------------------------------------------------- 611 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDD--------------------------------------------------------- 611 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCC---------------------------------------------------------
Confidence 88887777766555444444321
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 041643 358 PEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKT 437 (576)
Q Consensus 358 ~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~ 437 (576)
++- -++..++-+|..|=.+..+ -|-++.. ....+.|..+|.++ .+++...|+-|||-+-+.
T Consensus 612 ~~p--LLrQW~~icLG~LW~d~~~----------Arw~G~r------~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 612 PEP--LLRQWLCICLGRLWEDYDE----------ARWSGRR------DNAHEKLILLLSDP-VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred ccH--HHHHHHHHHHHHHhhhcch----------hhhcccc------ccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence 100 1345666666666433221 1221111 13467788888764 489999999999999876
Q ss_pred C----chh-------------hh---CcHH----HHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 041643 438 F----PAK-------------EK---RMIG----PLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIE 488 (576)
Q Consensus 438 ~----~~~-------------~~---~~I~----~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~ 488 (576)
+ .+. ++ ..|+ +|+.+++.+.+-|++|.+.+|+.+..+ +..|...+.-
T Consensus 673 ~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g----~~~~~~~va~ 743 (1387)
T KOG1517|consen 673 GSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG----YVSHLKVVAG 743 (1387)
T ss_pred cccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh----hHHHhHHHhh
Confidence 3 210 01 1233 788888999999999999999999864 2455555554
No 89
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=7 Score=45.56 Aligned_cols=249 Identities=16% Similarity=0.165 Sum_probs=133.4
Q ss_pred CCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHH
Q 041643 216 AASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLI 294 (576)
Q Consensus 216 g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV 294 (576)
+.++-++..||.||..|=+ +++.+..++ ..+=.||.+.++.|...|+.|--.++ |+.-+.|-+ --+.|.
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evC---PerldLIHk--nyrklC 223 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIHK--NYRKLC 223 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhhH--HHHHHH
Confidence 3338999999999999977 677777554 35566778877877777766655554 444444433 236666
Q ss_pred HhhccccccCCCc-chhhhhHHHHHHhhhcc--ccccc------cccCCCCCCCCCCCCCCCCcccccccCCHHHHHHH-
Q 041643 295 SLLCMDIALDLPK-PESAKTTIHSLVQMKKE--MTEKS------TNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKV- 364 (576)
Q Consensus 295 ~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~--~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~- 364 (576)
++|-.= +.+ +++ -|+.+++.... +.... .+|. ........+++. .-...||.++.-+
T Consensus 224 ~ll~dv----deWgQvv---lI~mL~RYAR~~l~~P~~~~~~~e~n~~--~~~~~~~~~~~~----~P~~~d~D~~lLL~ 290 (968)
T KOG1060|consen 224 RLLPDV----DEWGQVV---LINMLTRYARHQLPDPTVVDSSLEDNGR--SCNLKDKYNEIR----TPYVNDPDLKLLLQ 290 (968)
T ss_pred hhccch----hhhhHHH---HHHHHHHHHHhcCCCccccccccccCcc--cccccccccccC----CCcccCccHHHHHH
Confidence 666310 111 111 12222222111 00000 0000 000000000000 0123355554221
Q ss_pred -------------HHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHH
Q 041643 365 -------------RIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSI 431 (576)
Q Consensus 365 -------------k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aL 431 (576)
-.++|.+.|.||-.+ ....+++.|+++|+++ ..+|+-.++.|
T Consensus 291 stkpLl~S~n~sVVmA~aql~y~lAP~~-----------------------~~~~i~kaLvrLLrs~--~~vqyvvL~nI 345 (968)
T KOG1060|consen 291 STKPLLQSRNPSVVMAVAQLFYHLAPKN-----------------------QVTKIAKALVRLLRSN--REVQYVVLQNI 345 (968)
T ss_pred hccHHHhcCCcHHHHHHHhHHHhhCCHH-----------------------HHHHHHHHHHHHHhcC--CcchhhhHHHH
Confidence 135666666665322 1235688899999875 47788777777
Q ss_pred HHHhcCCch----------------h--------------hhC----cHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC
Q 041643 432 GCLAKTFPA----------------K--------------EKR----MIGPLVALLSNRNVDVATEAVIALSKFVSPDNF 477 (576)
Q Consensus 432 gnLa~~~~~----------------~--------------~~~----~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~ 477 (576)
..++..-+. . .+. +++.|-.-.++.+.++...|..||+.||+.-
T Consensus 346 a~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~-- 423 (968)
T KOG1060|consen 346 ATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRI-- 423 (968)
T ss_pred HHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh--
Confidence 777652110 0 011 1233333335556678888999999998532
Q ss_pred CCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643 478 NRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG 521 (576)
Q Consensus 478 ~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~ 521 (576)
.=+..-|+.-|++||++.|. |-..++..+-.+..+.+
T Consensus 424 -------~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 424 -------GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred -------CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 12334588889999998877 66667776766654333
No 90
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=2.4 Score=48.71 Aligned_cols=275 Identities=16% Similarity=0.162 Sum_probs=148.3
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 041643 207 LPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285 (576)
Q Consensus 207 ppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~ 285 (576)
+-++.||.+.. +-.++.|...|+.+-. .||.-+ -.+|.|++=|.++++.||..|+.+++.||..+|.+--.
T Consensus 147 ~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-- 218 (877)
T KOG1059|consen 147 DDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-- 218 (877)
T ss_pred HHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--
Confidence 55778888888 8999999999999876 555433 37899999999999999999999999999988765322
Q ss_pred hcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCc-ccccccCCHHHHHHH
Q 041643 286 RENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYN-KKDRELETPEVKAKV 364 (576)
Q Consensus 286 ~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~e~~d~~vk~~~ 364 (576)
.-|.+-.+|-..+ ..+ +=|.- +.....+ .|.- |.+ +|..+ |-+ .-+
T Consensus 219 ---LAP~ffkllttSs---NNW-----mLIKi-iKLF~aL-------tplE----------PRLgKKLie---plt-~li 265 (877)
T KOG1059|consen 219 ---LAPLFYKLLVTSS---NNW-----VLIKL-LKLFAAL-------TPLE----------PRLGKKLIE---PIT-ELM 265 (877)
T ss_pred ---ccHHHHHHHhccC---CCe-----ehHHH-HHHHhhc-------cccC----------chhhhhhhh---HHH-HHH
Confidence 2366667774321 111 00100 0000000 0000 000 01111 100 011
Q ss_pred H-HHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHH-HHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643 365 R-IACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVL-DQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE 442 (576)
Q Consensus 365 k-~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV-~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~ 442 (576)
. ..|..-|+- |-+.. |++ +. -++ .++.-+.-.+. ..|=-++.+.| +.+.+-++-+++-++.+.+..-
T Consensus 266 ~sT~AmSLlYE-CvNTV--Va~--s~----s~g-~~d~~asiqLCvqKLr~fiedsD-qNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 266 ESTVAMSLLYE-CVNTV--VAV--SM----SSG-MSDHSASIQLCVQKLRIFIEDSD-QNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred HhhHHHHHHHH-HHHHh--eee--hh----ccC-CCCcHHHHHHHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhhCHHHH
Confidence 1 223333332 22210 111 10 001 11222222222 23434666554 8899999999999988766432
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHH-HHHHHHHHhcc
Q 041643 443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVH-GLVFLCYLALS 519 (576)
Q Consensus 443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~-A~~~L~~lal~ 519 (576)
..--.-++++|+..++.|+-.|---|..+.+. ++...|+ +.|+.-+...+. .... ....+..|+.
T Consensus 335 qa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~- 402 (877)
T KOG1059|consen 335 QAHKDLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQ- 402 (877)
T ss_pred HHhHHHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhh-
Confidence 22335578899999999999999998888753 4455664 344443332332 3333 4444444442
Q ss_pred cCchHHHHhcc-chhhHhhhhcccCCCC
Q 041643 520 AGNSKALEQAR-ALNALEGAARTVLPQH 546 (576)
Q Consensus 520 ~~~~~~l~~~~-~l~~Le~~~~~~~~q~ 546 (576)
.|-.-+...+ ++.+|..+-+.+..+|
T Consensus 403 -snY~~ItdFEWYlsVlveLa~l~~~~~ 429 (877)
T KOG1059|consen 403 -SNYQYITDFEWYLSVLVELARLEGTRH 429 (877)
T ss_pred -hhhhhhhhHHHHHHHHHHHHhccccch
Confidence 2223344433 3455544444444443
No 91
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.47 E-value=3.3 Score=47.87 Aligned_cols=260 Identities=20% Similarity=0.187 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccH---HHHHhcCCHHHHHHHHccCCChHHHH---HHHHHHHHhhcC
Q 041643 162 AWVWSFISTIQMGQIKSRVDAANELASLARDNNRNR---KIIVEEGGILPLLKLLKEAASPDAQT---AAANALFNIATD 235 (576)
Q Consensus 162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~---~~I~~~GgIppLV~LL~~g~~~~~q~---~AA~AL~nLa~~ 235 (576)
+++....-+|++.+...|++||..+.+|+.. -.++ +.+...|.| |.+.|.+.. +++-- .|..|+.|.-.-
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeey-pEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEY-PEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCccc-HHHHHHHHHHHHHHHHhccc
Confidence 3556667799999999999999999999864 2222 344555554 777787766 77653 555666555421
Q ss_pred CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH---HHHHHhcCCchhHHHhhccccccCCCcchhhh
Q 041643 236 QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA---QEEFVRENVTRSLISLLCMDIALDLPKPESAK 312 (576)
Q Consensus 236 ~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~---r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~ 312 (576)
..-..-| .|.+|.|.-+|++.++.+|++....++.+|..++++ |+-++- ---|+++|.+- +
T Consensus 875 ~km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelLkah-----------k 938 (1172)
T KOG0213|consen 875 TKMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELLKAH-----------K 938 (1172)
T ss_pred cccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHH-----------H
Confidence 1111111 358999999999999999999999999999877663 322221 12355555321 0
Q ss_pred hHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHH
Q 041643 313 TTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAEL 392 (576)
Q Consensus 313 ~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~l 392 (576)
-+++.+|...+.++|.-- |
T Consensus 939 -------------------------------------------------K~iRRaa~nTfG~IakaI---------G--- 957 (1172)
T KOG0213|consen 939 -------------------------------------------------KEIRRAAVNTFGYIAKAI---------G--- 957 (1172)
T ss_pred -------------------------------------------------HHHHHHHHhhhhHHHHhc---------C---
Confidence 024456667776665310 1
Q ss_pred HHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHH-HHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643 393 RRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPA-IRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKF 471 (576)
Q Consensus 393 rr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a-~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nl 471 (576)
-..++..|+.-|+..+ ..+.-| .-+|+-.+.+.. --.++|.|.+=-+..+..||.-.-.+++-|
T Consensus 958 -----------PqdVLatLlnnLkvqe--Rq~RvcTtvaIaIVaE~c~--pFtVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 958 -----------PQDVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCG--PFTVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred -----------HHHHHHHHHhcchHHH--HHhchhhhhhhhhhhhhcC--chhhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence 1234555554343321 222111 112332221100 012567777666777888888888888866
Q ss_pred cCCCCCCCHHHHHHHHHCCCcHhHHHhhccChhHHH-HHHHHHHHHhcccCc
Q 041643 472 VSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDRAQV-HGLVFLCYLALSAGN 522 (576)
Q Consensus 472 a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~-~A~~~L~~lal~~~~ 522 (576)
-. |.+.-..++|.. ..|.|-+-|-..|.+-. .|..++-.++++++-
T Consensus 1023 Fe---yigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1023 FE---YIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred HH---HHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC
Confidence 31 222233444432 45555566655565433 466677777776544
No 92
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=1.9 Score=50.01 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643 407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVS 473 (576)
Q Consensus 407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~ 473 (576)
++.-|..++.++| -.+-..++.+||.||..........+..||.||++.+..|..+|+..|..+..
T Consensus 393 ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 393 ILRELQTYIKSSD-RSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence 4555666777666 35777788888888865544445567778888888888888888888887764
No 93
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.24 E-value=0.42 Score=55.62 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=78.9
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 041643 407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI 486 (576)
Q Consensus 407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I 486 (576)
.+..+.+=+++. ++.++..|+|+++.+= ..+.-..+++|+.++|.++++.|+++|+.||.++=.-+ .+..
T Consensus 93 avNti~kDl~d~-N~~iR~~AlR~ls~l~--~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-------~~l~ 162 (757)
T COG5096 93 AVNTIQKDLQDP-NEEIRGFALRTLSLLR--VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-------KDLY 162 (757)
T ss_pred HHHHHHhhccCC-CHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-------Hhhh
Confidence 466777777765 4999999999999872 11122357899999999999999999999999995322 4677
Q ss_pred HHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643 487 IEFDGVPPLMRLLKISDR-AQVHGLVFLCYL 516 (576)
Q Consensus 487 v~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l 516 (576)
.+.|-+..+..|+...|+ +...|+.+|..+
T Consensus 163 ~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 163 HELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred hcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 888999999999988888 777888888665
No 94
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.20 E-value=13 Score=39.26 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=75.9
Q ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHh--cCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643 157 NDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVE--EGGILPLLKLLKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 157 ~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~--~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~ 234 (576)
++....-+.+.|..+..-+...|+.|...|..+.... ...+.|.+ .--+..+.+.++.|+ .+-|.-|+.++.-|+.
T Consensus 38 ~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~l 115 (309)
T PF05004_consen 38 QEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLAL 115 (309)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhh
Confidence 3333333556678888778899999999998877642 22233322 224788889999998 6777788888877776
Q ss_pred C---CchHHHHHHcCCHHHHHHhhcCCCh--hHHHHHHHHHHHHh
Q 041643 235 D---QETVRFIVDVLGVPIIVSVLGEAPV--KVQVAVANLVARMA 274 (576)
Q Consensus 235 ~---~~~~~~iv~~Gavp~LV~lL~s~~~--~vq~~Aa~aL~~LA 274 (576)
. .+....+.+ ...|+|..++.++.. .++..++.+|+-++
T Consensus 116 tlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 116 TLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICT 159 (309)
T ss_pred hcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 4 244555554 488999999987654 34444555555443
No 95
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.94 E-value=0.13 Score=34.84 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 445 MIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 445 ~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
++|.++++|++.+++|+..|+++|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999886
No 96
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=92.67 E-value=19 Score=39.87 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=94.2
Q ss_pred HhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-----CChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-----ASPDAQTAAANALFNIAT-DQETVRFIVD 244 (576)
Q Consensus 171 L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-----~~~~~q~~AA~AL~nLa~-~~~~~~~iv~ 244 (576)
....+.+...+|..+|.|+.-.++..|...++.|+.+.|++.|+.. + .+.++-..+-|+-++. .++.+..+++
T Consensus 41 ~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred ccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 3445778889999999999988888999999999999999999987 5 8999999999999987 5677767765
Q ss_pred -cCCHHHHHHhhcC--------C---------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc
Q 041643 245 -VLGVPIIVSVLGE--------A---------PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC 298 (576)
Q Consensus 245 -~Gavp~LV~lL~s--------~---------~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~ 298 (576)
.+++..+++.|.. . .......+...++|+..+.+.... =.....++.|+.+|.
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILR 190 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHH
Confidence 5888888887621 0 223344567778888765443322 123356788888775
No 97
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=1.6 Score=49.67 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=76.2
Q ss_pred HhHHHHH-HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-C--
Q 041643 160 ILAWVWS-FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-D-- 235 (576)
Q Consensus 160 i~~~v~~-li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~-- 235 (576)
.+..+|. ++.....++...+..|+..|..|.... .--+. .....+++|++.. .+++..|...++-.+. .
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCC
Confidence 3445566 666777778888888888888776532 11122 2467889998887 8999888777665554 2
Q ss_pred C---c-hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643 236 Q---E-TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 236 ~---~-~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
+ + +...++++ +...+.+.+++.+..++..|+.+|+.+-..+++
T Consensus 268 ~~e~e~~e~kl~D~-aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 268 PLERESEEEKLKDA-AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred cccchhhhhhhHHH-HHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 1 1 22334433 566777777888889999999999988765433
No 98
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.17 E-value=0.24 Score=33.56 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=25.6
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhhcC
Q 041643 206 ILPLLKLLKEAASPDAQTAAANALFNIATD 235 (576)
Q Consensus 206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~ 235 (576)
+|.|+++|.+.+ ++++..|+.+|+.|+.+
T Consensus 2 lp~l~~~l~D~~-~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPS-PEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SS-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCC-HHHHHHHHHHHHHHHhh
Confidence 699999999988 99999999999999863
No 99
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.96 E-value=6 Score=38.98 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=65.3
Q ss_pred hcCCHHHHHHHHHHHHHHhhcC--cccHHHHHhc--CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643 172 QMGQIKSRVDAANELASLARDN--NRNRKIIVEE--GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG 247 (576)
Q Consensus 172 ~~G~~e~k~~AA~~L~~La~~~--~~~~~~I~~~--GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga 247 (576)
.+.+=+.|.+|...|..+...+ ..+...+.+. ..++.++..+.+.. ..+-..|..++..|+..-...-.-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4457788899999999988765 2333333221 34567777777766 66778999999999874333222223447
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 041643 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDS 278 (576)
Q Consensus 248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~ 278 (576)
+|.|++.+.++...+++.|..+|..|....+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC
Confidence 8999999999988899999999999987543
No 100
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.44 E-value=0.77 Score=44.13 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCc-HhHHHhh
Q 041643 421 AMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGV-PPLMRLL 499 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi-~~Lv~LL 499 (576)
+.++.+++.++|-|+..+++.-...+|.+...|++.++.|++.|...|+++...+ + +-=.|-+ ..++.+|
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~--------ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-M--------IKVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-c--------eeehhhhhHHHHHHH
Confidence 5778889999999998777655677899999999999999999999999998643 2 1112333 5666777
Q ss_pred ccChh-HHHHHHHHHHHHhcc
Q 041643 500 KISDR-AQVHGLVFLCYLALS 519 (576)
Q Consensus 500 ~~~d~-vq~~A~~~L~~lal~ 519 (576)
...++ ++..|...+..++..
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 66665 888888888887644
No 101
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.43 E-value=0.47 Score=42.91 Aligned_cols=67 Identities=21% Similarity=0.422 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
.++..|+++|..++++..+.-|+-=||.+++..+.. +-|+-..+.+||.+.+++|+.+|-.|+.++-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 468889999965545777777888899999977652 2355577888999999999999999998875
No 102
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.65 E-value=0.78 Score=39.96 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=50.1
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH--cCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643 205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD--VLGVPIIVSVLGEAPVKVQVAVANLVARMA 274 (576)
Q Consensus 205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~--~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA 274 (576)
-|||+++.+.+.+ .+++..|..+|.|+++... ..+.. ......|.+++.+.++.||. +|+.|-++-
T Consensus 28 Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQD-SRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRS-AAELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHH-HHHHHHHHh
Confidence 4799999999988 9999999999999997432 33332 45677888888888888764 456665553
No 103
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=90.33 E-value=1.3 Score=48.99 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=90.2
Q ss_pred HHHHHHhhcCcccHHHHHhcCCHHHHHHHH---------ccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHH
Q 041643 184 NELASLARDNNRNRKIIVEEGGILPLLKLL---------KEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVS 253 (576)
Q Consensus 184 ~~L~~La~~~~~~~~~I~~~GgIppLV~LL---------~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~ 253 (576)
.+|.-|+++ +.+..-|....++..|+++- ....++..-.+|.++|.|+--+ +.-|+..++.|..+.+++
T Consensus 3 ~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 456667775 56777777777788888876 3344388889999999999985 566778889999999999
Q ss_pred hhcCC-----ChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhcc
Q 041643 254 VLGEA-----PVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCM 299 (576)
Q Consensus 254 lL~s~-----~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~ 299 (576)
.|+.. +.++.--....|+-+....+..|..+.++ +++..++..|..
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~ 133 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALER 133 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99876 67888888998888887777888666655 888988887753
No 104
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.69 E-value=2 Score=43.97 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643 220 DAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297 (576)
Q Consensus 220 ~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL 297 (576)
....+|...|..++- |++.+....++.++..|+++|. +....++..+..+|..+--++|.+...|.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345678888888777 7888888889999999999994 45678899999999888888899999999999999999999
Q ss_pred cccc
Q 041643 298 CMDI 301 (576)
Q Consensus 298 ~~~t 301 (576)
++..
T Consensus 186 k~~~ 189 (257)
T PF08045_consen 186 KSKS 189 (257)
T ss_pred cccc
Confidence 8753
No 105
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.66 E-value=23 Score=40.14 Aligned_cols=119 Identities=21% Similarity=0.181 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
.++-|-.++++..++ .-+++.||-|.+..|.. -.+.|..+.+-+--.+.-|+..|..||++|+-+-+. +-..+
T Consensus 451 aLe~LC~fIEDcey~---~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--~~~~~ 525 (898)
T COG5240 451 ALEVLCTFIEDCEYH---QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD--VVSPQ 525 (898)
T ss_pred HHHHHHHHHhhcchh---HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc--cccHH
Confidence 467777788765433 34678888887755431 124566666644444566888899999999855432 11112
Q ss_pred HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHH---hccchhhHh
Q 041643 485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALE---QARALNALE 536 (576)
Q Consensus 485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~---~~~~l~~Le 536 (576)
.....|-+.|+..|. ++-.|..+|-++- +.+.-+.+. .-+-+|.||
T Consensus 526 -----sv~~~lkRclnD~DdeVRdrAsf~l~~~~-~~da~~pl~~sd~~~dipsle 575 (898)
T COG5240 526 -----SVENALKRCLNDQDDEVRDRASFLLRNMR-LSDACEPLFSSDELGDIPSLE 575 (898)
T ss_pred -----HHHHHHHHHhhcccHHHHHHHHHHHHhhh-hhhhhhccccccccCCcchhH
Confidence 223456677877766 8888888887773 222222222 245556665
No 106
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.61 E-value=1.8 Score=35.80 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 041643 222 QTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVREN 288 (576)
Q Consensus 222 q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g 288 (576)
.+.|.||++++++.+..-..+-+.+.|+.++++-.+ +...++.-+-.+|+-++.. .+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 467999999999988888888889999999999864 5688999999999988864 67777776665
No 107
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.55 E-value=8.6 Score=43.77 Aligned_cols=261 Identities=18% Similarity=0.205 Sum_probs=128.2
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhhcC---CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643 206 ILPLLKLLKEAASPDAQTAAANALFNIATD---QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE 282 (576)
Q Consensus 206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~---~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~ 282 (576)
|...+++|++.+ +.+++.||...+.|+.- ....+.+...|.| |.+-|....+++--....|+..+-+.. ..+.
T Consensus 606 vStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~-~~~~ 681 (975)
T COG5181 606 VSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVH-RFRS 681 (975)
T ss_pred HHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhh-cccc
Confidence 445567788877 88888888777777642 2223444455543 455555555555555555554444321 0100
Q ss_pred -HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643 283 -EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK 361 (576)
Q Consensus 283 -~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk 361 (576)
.=--.|.+|.|.-+|++. |.
T Consensus 682 mqpPi~~ilP~ltPILrnk----h~------------------------------------------------------- 702 (975)
T COG5181 682 MQPPISGILPSLTPILRNK----HQ------------------------------------------------------- 702 (975)
T ss_pred cCCchhhccccccHhhhhh----hH-------------------------------------------------------
Confidence 000124445554444432 11
Q ss_pred HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643 362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK 441 (576)
Q Consensus 362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~ 441 (576)
.+.++...-+..+|...++-|-+-| ..| .|-.+|+.| .+.+ -++..+|..++|++++...-
T Consensus 703 -Kv~~nti~lvg~I~~~~peyi~~rE---WMR---------IcfeLvd~L----ks~n-KeiRR~A~~tfG~Is~aiGP- 763 (975)
T COG5181 703 -KVVANTIALVGTICMNSPEYIGVRE---WMR---------ICFELVDSL----KSWN-KEIRRNATETFGCISRAIGP- 763 (975)
T ss_pred -HHhhhHHHHHHHHHhcCcccCCHHH---HHH---------HHHHHHHHH----HHhh-HHHHHhhhhhhhhHHhhcCH-
Confidence 1223444555556665555432221 222 122444444 4444 68899999999999852110
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643 442 EKRMIGPLVALLSNRNVDVATEAVIALSKFV--SPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL 518 (576)
Q Consensus 442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla--~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal 518 (576)
..++..|.+-|+..+-..+...+.||+=.+ |+. ...+|.|+.=-+..+. ||.--+-++|.+=.
T Consensus 764 -qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 764 -QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------------FSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred -HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------------hhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 112333333333222223333444444333 211 2345555555555555 88777787887754
Q ss_pred ccCchHHHHhccchhhHh-hhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643 519 SAGNSKALEQARALNALE-GAARTVLPQHPELRDLFAQAIYHLTLYQAG 566 (576)
Q Consensus 519 ~~~~~~~l~~~~~l~~Le-~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~ 566 (576)
.-++...---.-+.|.|| ++- =-|+-.+....-.+.+|.+-.+|
T Consensus 830 yig~~s~dYvy~itPlleDAlt----DrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 830 YIGQASLDYVYSITPLLEDALT----DRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHHHhhHHHHhhhc----ccchHHHHHHHHHHHHHhcCCCC
Confidence 444433222234456666 321 12344555666666666664333
No 108
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=1.6 Score=48.58 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhcCCc---hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643 223 TAAANALFNIATDQE---TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 223 ~~AA~AL~nLa~~~~---~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~ 299 (576)
.-+||+|+-.+.+.. -|.-+.++..+.+|+++|+.+...+..-+..+++|+.-.-+..|..+.+.|.|..|+.++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 356777777665432 35667788899999999999887777778888899886667789999999999999999854
Q ss_pred ccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC
Q 041643 300 DIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC 379 (576)
Q Consensus 300 ~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~ 379 (576)
. |.. ++....|.|..|-+|.
T Consensus 485 K--------------------------------------------------------Dda----Lqans~wvlrHlmync 504 (743)
T COG5369 485 K--------------------------------------------------------DDA----LQANSEWVLRHLMYNC 504 (743)
T ss_pred c--------------------------------------------------------hhh----hhhcchhhhhhhhhcC
Confidence 2 111 2345668888887776
Q ss_pred cccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 041643 380 LLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAK 436 (576)
Q Consensus 380 ~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~ 436 (576)
.+++ .|++ .++.+++.++.+..+++ -.+|..++..+.|+.-
T Consensus 505 q~~e------------kf~~---Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc 545 (743)
T COG5369 505 QKNE------------KFKF---LAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTC 545 (743)
T ss_pred cchh------------hhhh---HHhcCHHHHHHHhcCcc-cccHHHHHHHHHhccc
Confidence 5432 2432 56778999999987765 6899999999999864
No 109
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=88.80 E-value=1.1 Score=36.99 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHHHHHHHHHHhcccCchHHHHhcc
Q 041643 461 ATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVHGLVFLCYLALSAGNSKALEQAR 530 (576)
Q Consensus 461 ~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~A~~~L~~lal~~~~~~~l~~~~ 530 (576)
.|.|-||++++++.+ .-...+.+.+.++.++++.+..+. ++-.++..|+.++....-.+.+.+.|
T Consensus 4 lKaaLWaighIgss~-----~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP-----LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcCh-----HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 577999999998743 457778788999999999998776 66679999998886555555555544
No 110
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.76 E-value=30 Score=35.67 Aligned_cols=76 Identities=25% Similarity=0.215 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc--CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643 420 DAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS--NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR 497 (576)
Q Consensus 420 ~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~--~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~ 497 (576)
+.-.+..+.-.+|.|- ..-.||.|.+.|. ..++-|+-|||.||+.++.. .+++.|.+
T Consensus 200 SalfrhEvAfVfGQl~------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---------------~~~~vL~e 258 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQ------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---------------DCVEVLKE 258 (289)
T ss_pred hHHHHHHHHHHHhhcc------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---------------HHHHHHHH
Confidence 4566777777888772 2346999999874 34566899999999988742 36667778
Q ss_pred hhccChh-HHHHHHHHHHHH
Q 041643 498 LLKISDR-AQVHGLVFLCYL 516 (576)
Q Consensus 498 LL~~~d~-vq~~A~~~L~~l 516 (576)
.+...+. +...+..+|-.+
T Consensus 259 ~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDML 278 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHH
Confidence 8877666 555555555433
No 111
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.64 E-value=7.1 Score=46.38 Aligned_cols=82 Identities=11% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHH-HHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643 208 PLLK-LLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286 (576)
Q Consensus 208 pLV~-LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~ 286 (576)
.|+. +.+.+++...|.-|.-.|+.|....+-.. ..+--..+++-+++++++++..|+.||++++.++-.
T Consensus 821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~------- 890 (1233)
T KOG1824|consen 821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP------- 890 (1233)
T ss_pred HHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH-------
Confidence 3444 44445547788888888888876432211 112223677889999999999999999999975421
Q ss_pred cCCchhHHHhhccc
Q 041643 287 ENVTRSLISLLCMD 300 (576)
Q Consensus 287 ~g~I~~LV~LL~~~ 300 (576)
..+|.+...+.+.
T Consensus 891 -~yLpfil~qi~sq 903 (1233)
T KOG1824|consen 891 -KYLPFILEQIESQ 903 (1233)
T ss_pred -hHHHHHHHHHhcc
Confidence 3578888877653
No 112
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.20 E-value=1.5 Score=39.75 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643 161 LAWVWSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 161 ~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~ 234 (576)
-.+++.++.+|... +.....-|+.-|+.+.+.-|.-+..|-+.|+=...++||.+.+ ++++.+|..|+..|-.
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d-~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED-PEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 34677788888443 4555566777799999887777777778888999999999988 9999999999987643
No 113
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=60 Score=38.07 Aligned_cols=334 Identities=16% Similarity=0.217 Sum_probs=171.4
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcCcccHHHHHhcCC-HHHHHH-HHccCCChHHHHHHHHHHHHhhcCCc-h
Q 041643 163 WVWSFISTIQMGQI-KSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLK-LLKEAASPDAQTAAANALFNIATDQE-T 238 (576)
Q Consensus 163 ~v~~li~~L~~G~~-e~k~~AA~~L~~La~~~~~~~~~I~~~Gg-IppLV~-LL~~g~~~~~q~~AA~AL~nLa~~~~-~ 238 (576)
++..++...-.+.. ..|+.+..+|++++.+-+ ....+-.... +-..|. ..+++++..++..|..||.|=-.-.. |
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 44445554444433 488999999999997633 3333333333 344444 44556658899999999987543111 1
Q ss_pred H-HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHH-hhccccccCCCcchhhhhHHH
Q 041643 239 V-RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLIS-LLCMDIALDLPKPESAKTTIH 316 (576)
Q Consensus 239 ~-~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~-LL~~~t~~~~~~~i~~~~si~ 316 (576)
= ..+=..=.+.+.++.-++++.+++..|..+|..|..- +++- + + +.+-+ |+. .++.
T Consensus 209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L--yY~~-m-~----~yM~~alfa--------------itl~ 266 (859)
T KOG1241|consen 209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL--YYEF-M-E----PYMEQALFA--------------ITLA 266 (859)
T ss_pred hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH--HHHH-H-H----HHHHHHHHH--------------HHHH
Confidence 0 0011111234455555778889999999999888853 2321 1 1 11111 110 0000
Q ss_pred HHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHH-hhcCCccc-c---hhcccchH
Q 041643 317 SLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWK-LSKGCLLS-L---WSAESNAE 391 (576)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~-La~g~~~~-I---avae~~~~ 391 (576)
. -+ +.+++|. -.+.. -|. +|.-..+. + ...+.+..
T Consensus 267 a----------------------------------mk-s~~deVa----lQaiE-FWsticeEEiD~~~e~~e~~d~~~~ 306 (859)
T KOG1241|consen 267 A----------------------------------MK-SDNDEVA----LQAIE-FWSTICEEEIDLAIEYGEAVDQGLP 306 (859)
T ss_pred H----------------------------------Hc-CCcHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 0 00 1233332 12222 232 33211100 0 00000000
Q ss_pred HHHhhhccCchhHHHHHHHHHHHhhhcC---ChhhHHHHHH---HHHHHhcCCchhhhCcHHH---HHH-hhcCCCHHHH
Q 041643 392 LRRSAFKTNSPAAKAVLDQLLRLIHEES---DAMLQTPAIR---SIGCLAKTFPAKEKRMIGP---LVA-LLSNRNVDVA 461 (576)
Q Consensus 392 lrr~a~k~~s~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~---aLgnLa~~~~~~~~~~I~~---LV~-LL~~~~~~V~ 461 (576)
--...|-. .+.+.+++.|+.+|.+.+ +++.=.|+.. +|.=+|+...+ .++|+ +|+ -+++.+..-+
T Consensus 307 p~~~~fa~--~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~r 381 (859)
T KOG1241|consen 307 PSSKYFAR--QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNR 381 (859)
T ss_pred chhhHHHH--HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhh
Confidence 00000100 145678999999997632 2233344432 33333332221 23333 343 6788888888
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch---HHHHhccchhhH-h
Q 041643 462 TEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS---KALEQARALNAL-E 536 (576)
Q Consensus 462 ~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~---~~l~~~~~l~~L-e 536 (576)
.-|+.|.+..-.+. +++..+.++ .+++|.++.++..... +...+.|+++.++-..+.. .... ...+..| +
T Consensus 382 eaavmAFGSIl~gp---~~~~Lt~iV-~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l-~~~l~~l~~ 456 (859)
T KOG1241|consen 382 EAAVMAFGSILEGP---EPDKLTPIV-IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL-QSKLSALLE 456 (859)
T ss_pred hHHHHHHHhhhcCC---chhhhhHHH-hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh-hHHHHHHHH
Confidence 88999999887554 345555555 5799999999984443 5656999999998666522 1111 2223332 2
Q ss_pred hhhcccCCCCCcHHHHHHHHHHHHH--hhcC-CCCCCCCCC
Q 041643 537 GAARTVLPQHPELRDLFAQAIYHLT--LYQA-GSHPHRQTY 574 (576)
Q Consensus 537 ~~~~~~~~q~~~~~~l~~~a~~~l~--~y~~-~~~~~~~~~ 574 (576)
|+. ++|..-.=.--|+.-|. .|++ -++|+..|+
T Consensus 457 gL~-----DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 457 GLN-----DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred Hhh-----hCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 442 34544444445555555 5666 444666655
No 114
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.85 E-value=4.5 Score=38.55 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=72.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHcc--------CCChHHHHHHHHHHHHhhcCCch
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKE--------AASPDAQTAAANALFNIATDQET 238 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~--------g~~~~~q~~AA~AL~nLa~~~~~ 238 (576)
+..|+.+.... .-...|...-+.++ .-.+.-++.||+..|+++|.. ......+.....+|..|..+...
T Consensus 72 i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G 149 (187)
T PF06371_consen 72 IKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG 149 (187)
T ss_dssp HHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH
Confidence 67777775543 22222222122222 334555688999999999953 12257888999999999988887
Q ss_pred HHHHHH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643 239 VRFIVD-VLGVPIIVSVLGEAPVKVQVAVANLVARMA 274 (576)
Q Consensus 239 ~~~iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA 274 (576)
...+++ .+++..|+..|.+++..++..+...|+.++
T Consensus 150 ~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 150 LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 887775 788999999999999999999999988776
No 115
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=42 Score=35.47 Aligned_cols=86 Identities=13% Similarity=0.207 Sum_probs=61.4
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643 207 LPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286 (576)
Q Consensus 207 ppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~ 286 (576)
--||+||.+.+ |.+|..|+.-|.+++...-..-.--+.-.++.+.++++.... -++|+.+|.|++.+ ++.|..+.+
T Consensus 6 ~elv~ll~~~s-P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLS-PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCC-hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 45889999989 999999999998888761111111123357889999877655 57899999999974 677777776
Q ss_pred cCCchhHHHhh
Q 041643 287 ENVTRSLISLL 297 (576)
Q Consensus 287 ~g~I~~LV~LL 297 (576)
. .+..++..+
T Consensus 82 ~-~~k~l~~~~ 91 (353)
T KOG2973|consen 82 D-LLKVLMDML 91 (353)
T ss_pred H-HHHHHHHHh
Confidence 6 555555555
No 116
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=87.03 E-value=61 Score=36.93 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=64.8
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 041643 206 ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285 (576)
Q Consensus 206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~ 285 (576)
+|+|+.=+.+.. =+.+..++..|+.++......-..-....||.+.+.|-+.+.+++..+-.++-++.... ++-+ |.
T Consensus 256 lpsll~~l~~~k-WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I~ 332 (569)
T KOG1242|consen 256 LPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-IQ 332 (569)
T ss_pred hhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-HH
Confidence 566666555544 57788999999999987666666677889999999999999999999999999988632 2222 21
Q ss_pred hcCCchhHHHhhc
Q 041643 286 RENVTRSLISLLC 298 (576)
Q Consensus 286 ~~g~I~~LV~LL~ 298 (576)
-.||.|++-+.
T Consensus 333 --~~ip~Lld~l~ 343 (569)
T KOG1242|consen 333 --KIIPTLLDALA 343 (569)
T ss_pred --HHHHHHHHHhc
Confidence 13566666664
No 117
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=86.91 E-value=5.5 Score=43.09 Aligned_cols=134 Identities=15% Similarity=0.138 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHH
Q 041643 162 AWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF 241 (576)
Q Consensus 162 ~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~ 241 (576)
.+++.+|+....-++..|.-+-.+|..++-.++ +.+++.||+..|++.+-+|. .+..+..+.++..+-.+|..|..
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKY 183 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhh
Confidence 467777888888888899999999999998654 78889999999999998887 67888888999999888877765
Q ss_pred HHHcC----CHHHHHHh----hcCCCh-hHHHHHHHHHHHHhcCChHHHHHHHhc--CCchhHHHhhccc
Q 041643 242 IVDVL----GVPIIVSV----LGEAPV-KVQVAVANLVARMAELDSIAQEEFVRE--NVTRSLISLLCMD 300 (576)
Q Consensus 242 iv~~G----avp~LV~l----L~s~~~-~vq~~Aa~aL~~LA~~~~~~r~~i~~~--g~I~~LV~LL~~~ 300 (576)
+...- .+.++.+. .+...+ +.-..++.++..+-..=++.- .+... .+++.||..|..+
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~~~~~~lksLv~~L~~p 252 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSMNDFRGLKSLVDSLRLP 252 (371)
T ss_pred hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeecCCchHHHHHHHHHcCC
Confidence 54322 33444444 111111 233345555554433222211 11111 4677788887644
No 118
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=86.54 E-value=3.5 Score=38.77 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCchhhHHHHhHHHHHHHHHHHHHHchhcCccc
Q 041643 31 LLADRVIKSAQEAESSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPIRRVAADVAKNLDRSLTLVRRCKHAGVLR 110 (576)
Q Consensus 31 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~~C~~~g~~~ 110 (576)
.|.+.|+.+++.+..|+.-+..+.+-++.|.-...+.-..+ .--++|-+..+....++++++..++.+|.+.+.++
T Consensus 17 eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~----~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n 92 (147)
T PF05659_consen 17 ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN----VELDRPRQEEIERLKELLEKGKELVEKCSKVRRWN 92 (147)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh----hhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 46688899999999999999999999999999998877653 55778889999999999999999999999877654
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.66 E-value=4.8 Score=39.68 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCc-HHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHH
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRM-IGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEH 482 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~-I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~ 482 (576)
...+++.|++.+.+.. ..+...|..+|-.++....- ..++ ++.+...+.++++.++..++..|..+...-+......
T Consensus 92 ~~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~-~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSK-KFIREAANNALDAIIESCSY-SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCc-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 4567888988887654 67888999999999875441 2345 5666777899999999999999988864321000011
Q ss_pred HHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchH
Q 041643 483 SKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSK 524 (576)
Q Consensus 483 ~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~ 524 (576)
.....=...++.+..++..+++ ++..|-.++..+..+.|+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 1111002345677778877777 88888888877766666653
No 120
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=85.58 E-value=5.3 Score=38.31 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCH-HHHHHh
Q 041643 176 IKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGV-PIIVSV 254 (576)
Q Consensus 176 ~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gav-p~LV~l 254 (576)
+..|.++..+|+.|+..-+ . ++ +.-+|.+...|++++ +.+++.|..+|.+|....-.+- .|-+ ..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~---~-~v-e~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP---N-LV-EPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc---H-HH-HhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 5678899999999986422 2 22 346899999999998 9999999999999987432221 2333 778888
Q ss_pred hcCCChhHHHHHHHHHHHHhcC
Q 041643 255 LGEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 255 L~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
|.+.+++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999988864
No 121
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.84 E-value=74 Score=38.71 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=42.0
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhc
Q 041643 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAP-VKVQVAVANLVARMAE 275 (576)
Q Consensus 204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~-~~vq~~Aa~aL~~LA~ 275 (576)
+.|.-|+.-|++.+ ..+.-.||.-++.++..-. ..+++. +|...++++.-.. +..=.-++-+|+.||.
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 57778888887777 7888889999999988433 222222 4555666554332 3333445555555553
No 122
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=84.44 E-value=7 Score=45.84 Aligned_cols=105 Identities=18% Similarity=0.127 Sum_probs=82.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643 160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV 239 (576)
Q Consensus 160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~ 239 (576)
++..+..+..-++..+++.|..|-++|..| +. + +.+ .-.++|+.++|.+++ +.+++.||-|+++|=. -.+
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~-~---el~--~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~--ld~ 159 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLL-RV-K---ELL--GNIIDPIKKLLTDPH-AYVRKTAALAVAKLYR--LDK 159 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhc-Ch-H---HHH--HHHHHHHHHHccCCc-HHHHHHHHHHHHHHHh--cCH
Confidence 334455556778888999999998888765 22 1 222 226899999999999 9999999999999954 456
Q ss_pred HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274 (576)
Q Consensus 240 ~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA 274 (576)
+...+.|.+-.+..++.+.++.+...|..+|..+-
T Consensus 160 ~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 160 DLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 67778999999999999999988888777777655
No 123
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=83.46 E-value=82 Score=36.00 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=68.5
Q ss_pred HHHHHHHHc----cCCChHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643 206 ILPLLKLLK----EAASPDAQTAAANALFNIATDQ--ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 206 IppLV~LL~----~g~~~~~q~~AA~AL~nLa~~~--~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
+.|.+.+.+ +++ -.-++.|+.|++.+-..+ +....+| ..++|.+.....++..-++..+||+++.||.+
T Consensus 364 ~~pVl~FvEqni~~~~-w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--- 438 (858)
T COG5215 364 MRPVLGFVEQNIRSES-WANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH--- 438 (858)
T ss_pred HHHHHHHHHHhccCch-hhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH---
Confidence 345555554 334 556678889999887754 3345566 45899999999888888999999999999954
Q ss_pred HHHHHHhcCCchhHHHhhccccccCCCc
Q 041643 280 AQEEFVRENVTRSLISLLCMDIALDLPK 307 (576)
Q Consensus 280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~ 307 (576)
.-+.|-..|-+++.|+-..-| .+++++
T Consensus 439 va~~i~p~~Hl~~~vsa~liG-l~D~p~ 465 (858)
T COG5215 439 VAMIISPCGHLVLEVSASLIG-LMDCPF 465 (858)
T ss_pred HHHhcCccccccHHHHHHHhh-hhccch
Confidence 445666778888888865444 345665
No 124
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=82.67 E-value=4.1 Score=39.70 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHH----HHHHHHhhhcCChhhHHHHHHHH
Q 041643 356 ETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVL----DQLLRLIHEESDAMLQTPAIRSI 431 (576)
Q Consensus 356 ~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV----~~Ll~lL~~~~~~~lq~~a~~aL 431 (576)
.||..| ++..|+.+|..|=+|.......+|.. .-++..|.+-|--....+ ..|+..|..+.+..++...++++
T Consensus 50 ~Dp~~k--vR~aA~~~l~~lL~gsk~~L~~Ae~~-~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l 126 (182)
T PF13251_consen 50 KDPSPK--VRAAAASALAALLEGSKPFLAQAEES-KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL 126 (182)
T ss_pred cCCchh--HHHHHHHHHHHHHHccHHHHHHHHhc-CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 366665 67899999999988865555555532 112335654433332233 44778888777788899999999
Q ss_pred HHHhcCCchh--hhCcHHHHHH----hhcCCCHHHHHHHHHHHHhhcCC
Q 041643 432 GCLAKTFPAK--EKRMIGPLVA----LLSNRNVDVATEAVIALSKFVSP 474 (576)
Q Consensus 432 gnLa~~~~~~--~~~~I~~LV~----LL~~~~~~V~~eAa~AL~nla~~ 474 (576)
+.|+...+-. +.+.++.+|. ++.+.+.+|+..+..+++-+.+.
T Consensus 127 a~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 127 AVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 9998765531 3455555444 55788999999999898877653
No 125
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.78 E-value=2.9 Score=39.51 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=67.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhcCcccHHHHH-hcCCHHHHHHHHc--cCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643 170 TIQMGQIKSRVDAANELASLARDNNRNRKIIV-EEGGILPLLKLLK--EAASPDAQTAAANALFNIATDQETVRFIVDVL 246 (576)
Q Consensus 170 ~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~-~~GgIppLV~LL~--~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G 246 (576)
++..++.+.+..+..++..|=-..++-...|. .+|..+-++.+.. +.+ ...|..++.+| +.|...+.++..+...
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~-~~~~~~~lell-~aAc~d~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKD-RKVQKAALELL-SAACIDKSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHH-HHHTTSHHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCC-HHHHHHHHHHH-HHHHccHHHHHHHHHH
Confidence 44555556777777777766655555555555 5566888888888 445 77788887777 5555556666555566
Q ss_pred CHHHHHHhhcC-CChh-HHHHHHHHHHH
Q 041643 247 GVPIIVSVLGE-APVK-VQVAVANLVAR 272 (576)
Q Consensus 247 avp~LV~lL~s-~~~~-vq~~Aa~aL~~ 272 (576)
+++.|-++++. .++. ++..|+-+|..
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 78999999964 4455 67777776653
No 126
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=81.38 E-value=3.2 Score=46.36 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=83.3
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCH
Q 041643 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRS 480 (576)
Q Consensus 406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~ 480 (576)
.+++.|+++|++.+ ..+.-|+..++.|++--|.+- ++++|..|++++.+++...|++..|.|..+.-+.. .
T Consensus 431 ~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq---~ 506 (743)
T COG5369 431 PIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ---K 506 (743)
T ss_pred chHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc---c
Confidence 47899999997744 556678899999998766653 46789999999999999999999999998863210 1
Q ss_pred HHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643 481 EHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS 519 (576)
Q Consensus 481 ~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~ 519 (576)
+.+-.....-|+..++.+-+..+- +|...+..|.|+..+
T Consensus 507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence 222345556688888888876665 898888888888653
No 127
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.02 E-value=3.6 Score=35.82 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh----hCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE----KRMIGPLVALLSNRNVDVATEAVIALSKF 471 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~----~~~I~~LV~LL~~~~~~V~~eAa~AL~nl 471 (576)
+.++++++..+.+++ ..+.+.|+.+|.|+++..++.- ..+...|.+++...++.|+..| ..|-++
T Consensus 26 ~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 457889999998876 8999999999999998655311 2356778888888888877655 444443
No 128
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.94 E-value=6.7 Score=40.84 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=76.7
Q ss_pred HHHHHHH-HHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC-C-CCCCHHH
Q 041643 406 AVLDQLL-RLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP-D-NFNRSEH 482 (576)
Q Consensus 406 ~vV~~Ll-~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~-~-n~~~~~~ 482 (576)
++++.|+ .-+++.+ +.++.-|++++|-++-.........++-+.+.++.++..++..|..+|.-+... | .......
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 4555555 5566655 799999999999988655544445688889988888999999999999977632 1 1100000
Q ss_pred H--HHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643 483 S--KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 483 ~--~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~ 522 (576)
. ...-...-++.+.+.|.+.+. +|..|+..+|.+.++..-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 0 001122345566666666665 899999999998765543
No 129
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=80.80 E-value=17 Score=37.35 Aligned_cols=80 Identities=25% Similarity=0.282 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCC
Q 041643 180 VDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEA 258 (576)
Q Consensus 180 ~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~ 258 (576)
..|...|--++--+++.+....+..++.-|++||.....+..|..+..+|..+-. ++.|.+..-+.+|+..++.++++.
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~ 188 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSK 188 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccc
Confidence 3455566555555688889999999999999999554338999999999866555 689999899999999999999876
Q ss_pred C
Q 041643 259 P 259 (576)
Q Consensus 259 ~ 259 (576)
.
T Consensus 189 ~ 189 (257)
T PF08045_consen 189 S 189 (257)
T ss_pred c
Confidence 4
No 130
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=80.22 E-value=13 Score=44.81 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=81.7
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643 168 ISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL 246 (576)
Q Consensus 168 i~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G 246 (576)
+..|++- +...+.-|...+.-+.. +.+....+++.|.+-.|+.+|-+ - |+.++.+...|+.|+++++....-.++|
T Consensus 1777 ~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~-PS~R~~vL~vLYAL~S~~~i~keA~~hg 1853 (2235)
T KOG1789|consen 1777 ITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-Q-PSMRARVLDVLYALSSNGQIGKEALEHG 1853 (2235)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-C-hHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 4445543 44555566666554444 57777888899999999999965 4 6888999999999999999988889999
Q ss_pred CHHHHHHhh-cCCChhHHHHHHHHHHHHhcC
Q 041643 247 GVPIIVSVL-GEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 247 avp~LV~lL-~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
++-.+.+++ .+.+..++.++|..++.|-.+
T Consensus 1854 ~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1854 GLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred chhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 988887776 455678888899999998764
No 131
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=79.45 E-value=88 Score=38.68 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=52.0
Q ss_pred hcCC---HHHHHHHHccCCChHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643 202 EEGG---ILPLLKLLKEAASPDAQTAAANALFNIATDQ--ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 202 ~~Gg---IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~--~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
++|+ |+-+...++.=.....|.+|..-|..|+... |++- --++|.+|.++.++..+||..|..+|..+-.
T Consensus 417 ~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~ 491 (1431)
T KOG1240|consen 417 EEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLA 491 (1431)
T ss_pred ccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 4454 5555555555433778999999999999843 3322 2368999999999999999999999988653
No 132
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=79.44 E-value=98 Score=33.54 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCchHHHHHHcCCH
Q 041643 170 TIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQETVRFIVDVLGV 248 (576)
Q Consensus 170 ~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gav 248 (576)
++-+.+.+.+..+-+.+..+..+ ....+.+.+.+.=--+++-|..++ +..-+++|-.-+..+....+.... +--|.+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHH
Confidence 44445567777777777777765 667777777765444555665543 234455666666555544333222 356778
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643 249 PIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 249 p~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~ 300 (576)
..+|.+..+.++..+..+..+|+.++-.+|+ .+...||++.|++.+-.+
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhc
Confidence 8999999888899999999999999987774 678899999999988644
No 133
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=78.98 E-value=12 Score=36.86 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=65.4
Q ss_pred CHHHHHHHHccC-----CChHHHHHHHHHHHHhhcCCchHHHHHHc--CC--HHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643 205 GILPLLKLLKEA-----ASPDAQTAAANALFNIATDQETVRFIVDV--LG--VPIIVSVLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 205 gIppLV~LL~~g-----~~~~~q~~AA~AL~nLa~~~~~~~~iv~~--Ga--vp~LV~lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
.+..|++++..| +...--..-|..|.||+..++.|+.+.+. +. +..|+-++.+.+..-+.-++.+|-|.+.
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 588888888662 21334467889999999999999998853 33 5566666677777777789999999998
Q ss_pred CChHHHHHHHhc---CCchhHHHhhc
Q 041643 276 LDSIAQEEFVRE---NVTRSLISLLC 298 (576)
Q Consensus 276 ~~~~~r~~i~~~---g~I~~LV~LL~ 298 (576)
+.... ..+... +.+|.|+--|.
T Consensus 133 d~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 133 DTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 75444 444443 55555555554
No 134
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=8 Score=44.83 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=72.6
Q ss_pred hhcccchHHHHhhhccCch-----hHHHHHHHHHHH-hhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc-CC
Q 041643 384 WSAESNAELRRSAFKTNSP-----AAKAVLDQLLRL-IHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS-NR 456 (576)
Q Consensus 384 avae~~~~lrr~a~k~~s~-----a~~~vV~~Ll~l-L~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~-~~ 456 (576)
...+.++.+|+.+.-+..- ...+.|.+|+.+ +++.+ ++++..|+.+||.++-..++ -.|..|.+|. +-
T Consensus 527 l~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~n-DDVrRaAVialGFVl~~dp~----~~~s~V~lLses~ 601 (929)
T KOG2062|consen 527 LLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVN-DDVRRAAVIALGFVLFRDPE----QLPSTVSLLSESY 601 (929)
T ss_pred HhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccc-hHHHHHHHHHheeeEecChh----hchHHHHHHhhhc
Confidence 3344466677655311000 113567888877 55544 89999999999998743333 4788888885 66
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 457 NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 457 ~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
++.|+--||.||+=+|.+. ..+.+| ..|=-|.+.... |+..|+.++..|.
T Consensus 602 N~HVRyGaA~ALGIaCAGt-----G~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 602 NPHVRYGAAMALGIACAGT-----GLKEAI------NLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ChhhhhhHHHHHhhhhcCC-----CcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 8899999999999554332 112332 222233333333 7777888777664
No 135
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=78.68 E-value=14 Score=38.35 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=80.6
Q ss_pred hHHHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc--
Q 041643 161 LAWVWSFI-STIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-- 237 (576)
Q Consensus 161 ~~~v~~li-~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-- 237 (576)
..+...+| ..+++.+.+.|+.|..+|+-.+--+.+ .- .-.++-|.+.++.++ +..|..|..+|+.+.....
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a--~~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA--KEHLPLFLQALQKDD-EEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCch
Confidence 34444554 688999999999999999877765332 21 124788999998877 9999999999999886322
Q ss_pred hHH-------HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643 238 TVR-------FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 238 ~~~-------~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
.-. ..-....+..|.+.|.+.++++|..|+..++.|--.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 111 122244677888888888889999999999997654
No 136
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=78.42 E-value=56 Score=31.19 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=79.9
Q ss_pred HHHHhcCCH------HHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCchHH
Q 041643 168 ISTIQMGQI------KSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQETVR 240 (576)
Q Consensus 168 i~~L~~G~~------e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~~~~ 240 (576)
+.++..|+. +.-..+..++..|..++.-.++ +.+.--|...+.+..... ++..+..|..-|-++..++...-
T Consensus 17 ~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly 95 (160)
T PF11841_consen 17 IKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLY 95 (160)
T ss_pred HHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHH
Confidence 678888874 4445667777778766443554 444455777777776543 37788889899999999887766
Q ss_pred HHHHcCC-HHHHHHhhcCCChhHHHHHHHHHHHHh-cCChHHHHH
Q 041643 241 FIVDVLG-VPIIVSVLGEAPVKVQVAVANLVARMA-ELDSIAQEE 283 (576)
Q Consensus 241 ~iv~~Ga-vp~LV~lL~s~~~~vq~~Aa~aL~~LA-~~~~~~r~~ 283 (576)
..|+... ++.|+..|+..+.++|..|...+-.|- ..++.-|..
T Consensus 96 ~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~ 140 (160)
T PF11841_consen 96 QLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKE 140 (160)
T ss_pred HHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6665554 999999999999999999887554443 333344433
No 137
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=76.58 E-value=20 Score=34.18 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=76.1
Q ss_pred HHHHhcCCHHHHHHHHccCCC-----hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCC--ChhHHHHHHHHH
Q 041643 198 KIIVEEGGILPLLKLLKEAAS-----PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEA--PVKVQVAVANLV 270 (576)
Q Consensus 198 ~~I~~~GgIppLV~LL~~g~~-----~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~--~~~vq~~Aa~aL 270 (576)
...+..||++-|++++++|+. .+....+-.|+..|-.+.......++.--|...+.++... +..+...|...|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345678999999999999882 2444456666666665544334455555677777777543 467888899999
Q ss_pred HHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643 271 ARMAELDSIAQEEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 271 ~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~ 300 (576)
-++..+++.....+.++=-++.|+.+|...
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~ 114 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS 114 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC
Confidence 999988888778888887789999999753
No 138
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=76.55 E-value=1.5e+02 Score=36.84 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC----CchHHHHHHcCCHHH
Q 041643 175 QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD----QETVRFIVDVLGVPI 250 (576)
Q Consensus 175 ~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~----~~~~~~iv~~Gavp~ 250 (576)
+.+.|.+|..-|..|+..-+. +..+ .-.+|-+|.|+.+.. .++|..|..+|+.+-.. +..-..|.-+=..|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d--e~~L-DRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD--EVKL-DRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch--HHHH-hhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 567888998888888865321 1222 347899999999888 99999999999877642 222334555557899
Q ss_pred HHHhhcC-CChhHHHHHHHHHHHHhcC
Q 041643 251 IVSVLGE-APVKVQVAVANLVARMAEL 276 (576)
Q Consensus 251 LV~lL~s-~~~~vq~~Aa~aL~~LA~~ 276 (576)
|-+++.+ ....++..-|..|+.||..
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHH
Confidence 9999987 5567777788888888853
No 139
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.36 E-value=1.8e+02 Score=34.46 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD 235 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~ 235 (576)
.++=..|++-....-.+||..+.+|...+ -+.+. .+|..|=-+|++.. +..|+.|.+.|..+|.-
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~---~r~l~--pavs~Lq~flssp~-~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTN---SRELA--PAVSVLQLFLSSPK-VALRFAAVRTLNKVAMK 312 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccC---Hhhcc--hHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHh
Confidence 33334566666666779999999987543 34443 37888888888888 99999999999999973
No 140
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.94 E-value=6.9 Score=44.13 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=69.1
Q ss_pred HHHHHHHHH-hhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 041643 406 AVLDQLLRL-IHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALL-SNRNVDVATEAVIALSKFVSPDNFNRSEHS 483 (576)
Q Consensus 406 ~vV~~Ll~l-L~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL-~~~~~~V~~eAa~AL~nla~~~n~~~~~~~ 483 (576)
++|..|+.+ +++++ +++...|+.|||.++-..+ ..++..|++| .+.++.|+.-.|.||+=++++...
T Consensus 551 ~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------ 619 (926)
T COG5116 551 GVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------ 619 (926)
T ss_pred hhHhhhheeecccCc-hHHHHHHHHheeeeEecCc----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------
Confidence 567788877 66665 8899999999999875433 3577777777 467899999999999966543311
Q ss_pred HHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643 484 KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL 518 (576)
Q Consensus 484 ~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal 518 (576)
.-++..|-.|++.... |+-.|++++..|..
T Consensus 620 -----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 620 -----KVATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 1144556677776655 77778888877753
No 141
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=74.62 E-value=5.5 Score=44.06 Aligned_cols=91 Identities=14% Similarity=0.232 Sum_probs=57.4
Q ss_pred cCChhhHHHHHHHHHHHhcCCch--------hhhCcHHHHHH-hhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 041643 418 ESDAMLQTPAIRSIGCLAKTFPA--------KEKRMIGPLVA-LLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIE 488 (576)
Q Consensus 418 ~~~~~lq~~a~~aLgnLa~~~~~--------~~~~~I~~LV~-LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~ 488 (576)
.+.+.+..+++++|||+...... ...+.+..+.. .+-.+..+|+=+|+.||+|+-.++.. .+.+
T Consensus 495 Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~-------~lq~ 567 (728)
T KOG4535|consen 495 ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL-------PLQT 567 (728)
T ss_pred hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc-------cccC
Confidence 44568899999999999753221 11222222222 33456788999999999999865432 0222
Q ss_pred C----CCcHhHHHhhccCh-h-HHHHHHHHHHH
Q 041643 489 F----DGVPPLMRLLKISD-R-AQVHGLVFLCY 515 (576)
Q Consensus 489 ~----ggi~~Lv~LL~~~d-~-vq~~A~~~L~~ 515 (576)
. -..+.|++|+.... . ++..|+.+|..
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 1 25678889987654 3 66677665543
No 142
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=72.30 E-value=78 Score=33.71 Aligned_cols=255 Identities=16% Similarity=0.108 Sum_probs=141.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcC-CHHHHHHHHccC--CChHHHHHHHHHHHHhhcCCchHHHHHH-c
Q 041643 170 TIQMGQIKSRVDAANELASLARDNNRNRKIIVEEG-GILPLLKLLKEA--ASPDAQTAAANALFNIATDQETVRFIVD-V 245 (576)
Q Consensus 170 ~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~G-gIppLV~LL~~g--~~~~~q~~AA~AL~nLa~~~~~~~~iv~-~ 245 (576)
++|.=+.-.+.-|..+|-+|+.. +++|+.+-.+. .--.++++|++. . ...|.+....++-|+-+++-.+.|-+ -
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~-~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGV-KQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34443445677788899999886 67888775444 456899999874 4 78899999999999987766643333 2
Q ss_pred CCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChH-HHHHHHhcCCchhHHHhhccccccCCCc-chhhhh-HHHHHH-h
Q 041643 246 LGVPIIVSVLGEA-PVKVQVAVANLVARMAELDSI-AQEEFVRENVTRSLISLLCMDIALDLPK-PESAKT-TIHSLV-Q 320 (576)
Q Consensus 246 Gavp~LV~lL~s~-~~~vq~~Aa~aL~~LA~~~~~-~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~-si~~~v-~ 320 (576)
.-+.-|+++.++. .+.+-.-+...+.|+....|. .--...-.|-+.+-|++|..+. ++. .+..-. -|.+.. .
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erk---ysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERK---YSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcC---CChHHHHHHHHHHHHHHHh
Confidence 3466777777664 356667778888888753321 2222233354566677665432 111 011000 010000 0
Q ss_pred hhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhcccc-hHHHHhhhc
Q 041643 321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAESN-AELRRSAFK 398 (576)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~~-~~lrr~a~k 398 (576)
..+..+ ..|.-+ .+ -+.-.-.| +....- -.-..| +.+.+.
T Consensus 312 ~~k~l~----------------------------~fD~Y~-~E--Ldsg~l~w----Sp~H~~~dFWs~N~d~l~kd--- 353 (432)
T COG5231 312 NTKKLC----------------------------IFDNYL-NE--LDSGRLEW----SPYHHKKDFWSTNLDMLIKD--- 353 (432)
T ss_pred hhhhhh----------------------------HHHHHH-HH--HhhCcccC----CCcccccCchhhhHHHHhhh---
Confidence 000000 000000 00 00111111 111100 000000 011110
Q ss_pred cCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 399 TNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 399 ~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
--.++.+|.++++.........-|+.-|+.+++..|+. ..|+=..+.+|+++.+++|+-||-.|+.-+.
T Consensus 354 -----ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 354 -----NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred -----hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 12467889999886542224445778899999887763 2366678899999999999999999887554
No 143
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=71.78 E-value=77 Score=36.22 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh
Q 041643 212 LLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDS 278 (576)
Q Consensus 212 LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~ 278 (576)
-|++.- +.++-++|++++.++...- ....++ -+|..|--+|++.....|-.|...|-.||...|
T Consensus 272 wls~k~-emV~lE~Ar~v~~~~~~nv-~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 272 WLSDKF-EMVFLEAARAVCALSEENV-GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HhcCcc-hhhhHHHHHHHHHHHHhcc-CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 444434 6788899999988876221 111221 256777788888888888888888888886544
No 144
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.06 E-value=23 Score=33.62 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=72.4
Q ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCC--HHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643 157 NDPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGG--ILPLLKLLKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 157 ~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~Gg--IppLV~LL~~g~~~~~q~~AA~AL~nLa~ 234 (576)
...+-.|+-....+|++.+.+.|..++.-+.-+...++ .+.+.+.|+ +..|+.+|+..+.+...+.|..+|..|-.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34455566666789999898888877666665554321 466656666 88999999987757788888888887764
Q ss_pred C----CchHHHHHHc---CCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643 235 D----QETVRFIVDV---LGVPIIVSVLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 235 ~----~~~~~~iv~~---Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
. ++-.+.+.-- +.++.++++++. ......+..+|..+-.
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3 3434444321 224444444443 3444555666655544
No 145
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=68.34 E-value=33 Score=39.11 Aligned_cols=75 Identities=21% Similarity=0.351 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhc
Q 041643 421 AMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLK 500 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~ 500 (576)
+....-|..-|...-+.|++-+..+|-.+++|..+.+..|++.|...|-.+|-+. +++...|+| .|+|||.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaD-----vL~QlL~ 106 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVAD-----VLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHH-----HHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHH-----HHHHHHh
Confidence 5666667777777778888888889999999999999999999999999997542 467777754 7899998
Q ss_pred cChh
Q 041643 501 ISDR 504 (576)
Q Consensus 501 ~~d~ 504 (576)
+.|.
T Consensus 107 tdd~ 110 (556)
T PF05918_consen 107 TDDP 110 (556)
T ss_dssp ---H
T ss_pred cccH
Confidence 7764
No 146
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.88 E-value=40 Score=37.18 Aligned_cols=115 Identities=22% Similarity=0.266 Sum_probs=82.8
Q ss_pred HHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC---Cch-------HHHHHHcCCHHH
Q 041643 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD---QET-------VRFIVDVLGVPI 250 (576)
Q Consensus 181 ~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~---~~~-------~~~iv~~Gavp~ 250 (576)
+.-..+-.||.. |+---..++..+|+.|+.||...+ .++-.....-|..|+-. .++ ..++|+.+.++.
T Consensus 103 d~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 103 DIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 344566677776 445567789999999999999888 78877777777888742 111 458899999999
Q ss_pred HHHhhcCCChhHHHH------HHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643 251 IVSVLGEAPVKVQVA------VANLVARMAELDSIAQEEFVRENVTRSLISLL 297 (576)
Q Consensus 251 LV~lL~s~~~~vq~~------Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL 297 (576)
||+-+.--++.+++. +...+-|+..-.+..-..+++.|.+.-|+.-+
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl 233 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRL 233 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHH
Confidence 999886544555544 45556777777777777777777766666644
No 147
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.43 E-value=23 Score=43.26 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS 483 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~ 483 (576)
|.--++.|+..++.++++.+.-+++-++|-+|-.|++.-...-+.|.+-|+..++.|++.|...|+++...+
T Consensus 958 ces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-------- 1029 (1251)
T KOG0414|consen 958 CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-------- 1029 (1251)
T ss_pred HHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--------
Confidence 445678899999988889999999999999998787643445577888899999999999999999987532
Q ss_pred HHHHHCCCcHhHHHhhccChh
Q 041643 484 KAIIEFDGVPPLMRLLKISDR 504 (576)
Q Consensus 484 ~~Iv~~ggi~~Lv~LL~~~d~ 504 (576)
.|.=.|-+.-+..+|..++.
T Consensus 1030 -miKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 1030 -MIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred -hhHhcccHHHHHHHhcCCcH
Confidence 23335666666666766554
No 148
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=65.92 E-value=49 Score=37.51 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC---hHHHHHHHHHHHHhhcCCchH
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS---PDAQTAAANALFNIATDQETV 239 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~---~~~q~~AA~AL~nLa~~~~~~ 239 (576)
.+.....++.+|+...|..|...|.+++.+ .......+...|+..|.++..+|+. ........+|+..|-.+.-..
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 455668899999999999999999999886 6677888889999999999999872 122333333443333222111
Q ss_pred HHHHHcCCHHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccc
Q 041643 240 RFIVDVLGVPIIVSVLGEA--PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMD 300 (576)
Q Consensus 240 ~~iv~~Gavp~LV~lL~s~--~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~ 300 (576)
-..+....|...+.+.+-. +..+-..|...|-++..+++.-++.+.++--|..|+.+|.-.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~ 225 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS 225 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc
Confidence 1222222333333333221 233445566667777777777888999998899999998643
No 149
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.44 E-value=1.4e+02 Score=35.31 Aligned_cols=232 Identities=16% Similarity=0.213 Sum_probs=113.1
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh-cCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 041643 206 ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL-GEAPVKVQVAVANLVARMAELDSIAQEEF 284 (576)
Q Consensus 206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL-~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i 284 (576)
|..+..||.+.+ +.+.++||.+|.+|+.++..-++ +...+++++ +..+..++--...-|..+... .+..+
T Consensus 245 i~~i~~lL~sts-saV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~---~~~il 315 (948)
T KOG1058|consen 245 IRCIYNLLSSTS-SAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKAL---HEKIL 315 (948)
T ss_pred HHHHHHHHhcCC-chhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhh---hHHHH
Confidence 778888998877 89999999999999987654332 233444444 223333333333333334322 22222
Q ss_pred HhcCCchhHHHhhccccccCCCcc--hh----hhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCH
Q 041643 285 VRENVTRSLISLLCMDIALDLPKP--ES----AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETP 358 (576)
Q Consensus 285 ~~~g~I~~LV~LL~~~t~~~~~~~--i~----~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~ 358 (576)
. |.+-..+.+|++....-.+|+ ++ ....+.-+|+..+.- +... ..-|.+|.
T Consensus 316 ~--~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke-------------~~kT--------~~~e~d~~ 372 (948)
T KOG1058|consen 316 Q--GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKE-------------VMKT--------HNEESDDN 372 (948)
T ss_pred H--HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHH-------------HHhc--------cccccccc
Confidence 1 334444555554421111110 00 000111111110000 0000 00011221
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643 359 EVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF 438 (576)
Q Consensus 359 ~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~ 438 (576)
. +-++.-.+++.+++..-++ .+..+|..|+.+|.+.. +..-...+.-+...-..+
T Consensus 373 ~---~yRqlLiktih~cav~Fp~---------------------~aatvV~~ll~fisD~N-~~aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 373 G---KYRQLLIKTIHACAVKFPE---------------------VAATVVSLLLDFISDSN-EAAASDVLMFVREAIEKF 427 (948)
T ss_pred h---HHHHHHHHHHHHHhhcChH---------------------HHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhC
Confidence 1 1235567777777654221 23468899999997643 332222223333444455
Q ss_pred chhhhCcHHHHHHhh-cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH--HHH--HCCCcHhHHHh
Q 041643 439 PAKEKRMIGPLVALL-SNRNVDVATEAVIALSKFVSPDNFNRSEHSK--AII--EFDGVPPLMRL 498 (576)
Q Consensus 439 ~~~~~~~I~~LV~LL-~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~--~Iv--~~ggi~~Lv~L 498 (576)
++-...+|..|+.-+ .-+..++-+-|.|-++..+.+. .+.+. .++ .-|-+|.+..=
T Consensus 428 p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~----~~i~~~~k~i~~slGEvp~~~se 488 (948)
T KOG1058|consen 428 PNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGL----SEIQSVIKIIRQSLGEVPIVCSE 488 (948)
T ss_pred chHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh----HHHHHHHHHHHHhccccceehHH
Confidence 554455677777765 2345567788999999887543 22222 222 24777766643
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.35 E-value=24 Score=40.20 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHH
Q 041643 173 MGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPII 251 (576)
Q Consensus 173 ~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~L 251 (576)
.|+.+.|.-||.-+...-+.=+.. .+-+|..++.|.++.+ ..++..|...|-.++.+ ++....|+ .+|
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l-----~~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~kva-----DvL 101 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDL-----QEEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVSKVA-----DVL 101 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGG-----HHHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HHHHH-----HHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHhHHH-----HHH
Confidence 478999999999887766653433 2347889999999888 99999999999999995 56666664 589
Q ss_pred HHhhcCCChhHHHHHHHHH
Q 041643 252 VSVLGEAPVKVQVAVANLV 270 (576)
Q Consensus 252 V~lL~s~~~~vq~~Aa~aL 270 (576)
++||.+.+..-...+=.+|
T Consensus 102 ~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 102 VQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp HHHTT---HHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHH
Confidence 9999877643333333333
No 151
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=64.25 E-value=74 Score=34.78 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhhcCccc-------------HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643 176 IKSRVDAANELASLARDNNRN-------------RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI 242 (576)
Q Consensus 176 ~e~k~~AA~~L~~La~~~~~~-------------~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i 242 (576)
.+....||..+.-|..+.+.. ++.+.. -.+|+|++-.++.+ ...|.+-..||.+|-.+-...-.+
T Consensus 283 ~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~ 360 (415)
T PF12460_consen 283 PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLL 360 (415)
T ss_pred hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHH
Confidence 344567777777776652221 334432 36899999998877 678899999999999864432222
Q ss_pred HH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643 243 VD-VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 243 v~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
-+ .-.+|.|++-|..++.+++..+..+|..+..+.++
T Consensus 361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 22 33689999999999999999999999999876543
No 152
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=63.73 E-value=92 Score=32.04 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhcCccc-HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHH---------HHHHcCC
Q 041643 178 SRVDAANELASLARDNNRN-RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVR---------FIVDVLG 247 (576)
Q Consensus 178 ~k~~AA~~L~~La~~~~~~-~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~---------~iv~~Ga 247 (576)
.|.-+...++.|.+.++.. ...+...+.||-.++.++.|+ ...|.-|+..+..+-.+...-. ..|. -.
T Consensus 141 LRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~-~~ 218 (293)
T KOG3036|consen 141 LRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERFSAVA-LV 218 (293)
T ss_pred HhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH-HH
Confidence 4567777888888765432 334557899999999999999 9999999999999888765311 1111 11
Q ss_pred HHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643 248 VPI-IVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286 (576)
Q Consensus 248 vp~-LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~ 286 (576)
..- ..++.+.++..+-..+..+..+|+ ++|..|.++..
T Consensus 219 L~kmv~~l~~~ps~RllKhviRcYlrLs-dnprar~aL~~ 257 (293)
T KOG3036|consen 219 LGKMVFQLVSMPSPRLLKHVIRCYLRLS-DNPRARAALRS 257 (293)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCHHHHHHHHh
Confidence 222 233446678888899999999999 46888876653
No 153
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=63.60 E-value=16 Score=37.09 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHhhcCCchHHHHHHcCC-------HHHHHHhhcC-CChhHHHHHHHHHHHHhcCChH-HHHHHHhcCC
Q 041643 219 PDAQTAAANALFNIATDQETVRFIVDVLG-------VPIIVSVLGE-APVKVQVAVANLVARMAELDSI-AQEEFVRENV 289 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga-------vp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~-~r~~i~~~g~ 289 (576)
-..|.-|..+|.+|+....|...+..-|- +..|+++|.. ++.-.++.|...|.+||..++. +|..-.+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 46799999999999988877665555443 4556666644 5678899999999999987655 4555566799
Q ss_pred chhHHHhhcc
Q 041643 290 TRSLISLLCM 299 (576)
Q Consensus 290 I~~LV~LL~~ 299 (576)
|..||.++..
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999964
No 154
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.95 E-value=40 Score=38.26 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=66.4
Q ss_pred HhcCC-HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643 201 VEEGG-ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 201 ~~~Gg-IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
++-|. |.-|-+.|.++. .+.+..+..=+..|=....+.-........+.|.+-|++.+++|...+...++++|.++ +
T Consensus 332 id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~-~ 409 (675)
T KOG0212|consen 332 IDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS-N 409 (675)
T ss_pred cchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc-c
Confidence 45555 677888888777 88888777666666555556665666778889999999999999999999999999754 3
Q ss_pred HHHHHHhcCCchhHHHhhc
Q 041643 280 AQEEFVRENVTRSLISLLC 298 (576)
Q Consensus 280 ~r~~i~~~g~I~~LV~LL~ 298 (576)
.. |.++.+.+||.
T Consensus 410 ~~------~~~~fl~sLL~ 422 (675)
T KOG0212|consen 410 SP------NLRKFLLSLLE 422 (675)
T ss_pred cc------cHHHHHHHHHH
Confidence 32 44566666664
No 155
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.48 E-value=1.5e+02 Score=35.01 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=109.1
Q ss_pred cccccHHHHHHHHHh--hhcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhc
Q 041643 116 TTNADFKKVFSLLES--SIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG-QIKSRVDAANELASLARD 192 (576)
Q Consensus 116 ~~~~~l~~l~~~L~~--~~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La~~ 192 (576)
+..++++.|+.+.-- ..+...|---+.. .+..|.=.+-+.+.++ -..++.. ..-+..++..+|.||++.
T Consensus 501 Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~----~s~~~~d~~~~en~E~L~altnLas~ 572 (748)
T KOG4151|consen 501 IKPGGYEALLRLGQQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPL----DSALHNDEKGLENFEALEALTNLASI 572 (748)
T ss_pred ccccHHHHHHHHHHHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhh----cchhhhhHHHHHHHHHHHHhhcccCc
Confidence 356778877777632 2334555332221 2223333333444333 1222221 233456788889999998
Q ss_pred CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch-HHHHHH-cCCHHHHHHhhcCCChhHHHHHHHHH
Q 041643 193 NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET-VRFIVD-VLGVPIIVSVLGEAPVKVQVAVANLV 270 (576)
Q Consensus 193 ~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~-~~~iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL 270 (576)
++.-|..|.++-+++-.=.++-+.+ +-.|..|+..+.||..++.- -+.+++ ....|....++.+..+.....++.++
T Consensus 573 s~s~r~~i~ke~~~~~ie~~~~ee~-~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~ 651 (748)
T KOG4151|consen 573 SESDRQKILKEKALGKIEELMTEEN-PALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGAL 651 (748)
T ss_pred chhhHHHHHHHhcchhhHHHhhccc-HHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccc
Confidence 8888888888877777556666667 99999999999999998754 456776 66788888877776666666677777
Q ss_pred HHHhcCChHHHH-HHHhcCCchhHHHhhccc
Q 041643 271 ARMAELDSIAQE-EFVRENVTRSLISLLCMD 300 (576)
Q Consensus 271 ~~LA~~~~~~r~-~i~~~g~I~~LV~LL~~~ 300 (576)
..|+..+..+.. ...-...-..++.++.++
T Consensus 652 a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~ 682 (748)
T KOG4151|consen 652 AAITSVVENHCSRILELLEWLEILVRAIQDE 682 (748)
T ss_pred cchhhcchhhhhhHHHhhcchHHHHHhhcCc
Confidence 766665544443 222223445566666543
No 156
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=59.07 E-value=44 Score=31.05 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHh-hhcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-Cccc
Q 041643 119 ADFKKVFSLLES-SIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARD-NNRN 196 (576)
Q Consensus 119 ~~l~~l~~~L~~-~~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~-~~~~ 196 (576)
+.|+.++....+ .+.+..|-+.+-..+.... -+....++++. +..+|+.+++..+..|..-|-.+.++ ....
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~--~~~~~k~a~ra----l~krl~~~n~~vql~AL~LLe~~vkNCG~~f 76 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRS--KDVQPKYAMRA----LKKRLLSKNPNVQLYALLLLESCVKNCGTHF 76 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhC--CCCCHHHHHHH----HHHHHcCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 556677777643 3455666655543331110 01233444444 47889999999999998877777765 3556
Q ss_pred HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643 197 RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 197 ~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~ 234 (576)
...|...+-+..|++++....++.+|......+.+.+.
T Consensus 77 h~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 77 HDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 67888888899999999866548899988888877775
No 157
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=59.04 E-value=41 Score=34.76 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCchHHHHHHcCCH
Q 041643 170 TIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQETVRFIVDVLGV 248 (576)
Q Consensus 170 ~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gav 248 (576)
-+..++.--|..+|..++.|-+ .-+||.|.+.|...+ .+-++.+||.||+.++. ..++
T Consensus 195 ~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~ 253 (289)
T KOG0567|consen 195 GLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCV 253 (289)
T ss_pred hcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHH
Confidence 3333444445555555555432 236899999886542 27788899999998875 2256
Q ss_pred HHHHHhhcCCChhHHHHHHHHHH
Q 041643 249 PIIVSVLGEAPVKVQVAVANLVA 271 (576)
Q Consensus 249 p~LV~lL~s~~~~vq~~Aa~aL~ 271 (576)
++|.+++.+...-+++.+.-+|-
T Consensus 254 ~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 254 EVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH
Confidence 68888888876666665555543
No 158
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=58.18 E-value=2.5e+02 Score=29.59 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 041643 219 PDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMA 274 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA 274 (576)
+.+...|..+-+-|... +..+-.-.-...+|.|+.+|.+.+.+||..|..+|+-|-
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34565555555555543 332111122446999999999999999999999888664
No 159
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=56.53 E-value=3.1e+02 Score=32.95 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=40.3
Q ss_pred HHHhcCCHHHHHHHHccCCC-hHHHHHH---HHHHHHhhcCCchHHHHHHcCCHHHHHHhhc
Q 041643 199 IIVEEGGILPLLKLLKEAAS-PDAQTAA---ANALFNIATDQETVRFIVDVLGVPIIVSVLG 256 (576)
Q Consensus 199 ~I~~~GgIppLV~LL~~g~~-~~~q~~A---A~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~ 256 (576)
.+.+.||+..|+.+|.+-.. ...++.. ..-|...++-+.||+.+++.|+++.|.+.|.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHH
Confidence 34468999999999976321 1233322 3333344456799999999999999999884
No 160
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.07 E-value=63 Score=37.96 Aligned_cols=126 Identities=14% Similarity=0.039 Sum_probs=83.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHc
Q 041643 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDV 245 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~ 245 (576)
+.++.+.++.+.|..+..+|.. .. +..-..- ...++||..++....---.-.++.-+|+||++.+ ..++.|+++
T Consensus 509 Llrl~~~q~e~akl~~~~aL~~--~i-~f~~~~~--~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke 583 (748)
T KOG4151|consen 509 LLRLGQQQFEEAKLKWYHALAG--KI-DFPGERS--YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKE 583 (748)
T ss_pred HHHHHHHhchHHHHHHHHHHhh--hc-CCCCCch--hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHH
Confidence 3555666677888888887772 22 1111111 2468888888877651234469999999999954 456779998
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh-cCCchhHHHhh
Q 041643 246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR-ENVTRSLISLL 297 (576)
Q Consensus 246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~-~g~I~~LV~LL 297 (576)
-+++.+-.++...++-.|..++..+.||..+.--+-.-+++ ....+....++
T Consensus 584 ~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~ 636 (748)
T KOG4151|consen 584 KALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL 636 (748)
T ss_pred hcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH
Confidence 88888777777778889999999999999754333333444 23344444444
No 161
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=55.97 E-value=5 Score=26.34 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhc
Q 041643 460 VATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLK 500 (576)
Q Consensus 460 V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~ 500 (576)
|+.+|+++|+++... .++++|++.|+
T Consensus 1 VR~~Aa~aLg~igd~---------------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP---------------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH---------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH---------------HHHHHHHHHhc
Confidence 678899999999631 25677777664
No 162
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=55.92 E-value=44 Score=31.47 Aligned_cols=88 Identities=23% Similarity=0.188 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHhcCCchh------hhCcHHHHHHhhc--CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcH
Q 041643 422 MLQTPAIRSIGCLAKTFPAK------EKRMIGPLVALLS--NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVP 493 (576)
Q Consensus 422 ~lq~~a~~aLgnLa~~~~~~------~~~~I~~LV~LL~--~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~ 493 (576)
+-...++.++..|=...++. ..|+++.++.+.. ..+..++..++.+|..-+.+ +.++..+...|++
T Consensus 58 d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d------~~~r~~I~~~~~~ 131 (157)
T PF11701_consen 58 DSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID------KSCRTFISKNYVS 131 (157)
T ss_dssp CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS------HHHHHCCHHHCHH
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHH
Confidence 34556777776663322221 3478888999888 77888888888888755542 4566666678999
Q ss_pred hHHHhhccCh--h-HHHHHHHHHHH
Q 041643 494 PLMRLLKISD--R-AQVHGLVFLCY 515 (576)
Q Consensus 494 ~Lv~LL~~~d--~-vq~~A~~~L~~ 515 (576)
.|-++++.++ . ++..|+..||-
T Consensus 132 ~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 132 WLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHccccchHHHHHHHHHHHhc
Confidence 9999996443 3 67888887774
No 163
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=55.42 E-value=10 Score=25.09 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhcC
Q 041643 459 DVATEAVIALSKFVS 473 (576)
Q Consensus 459 ~V~~eAa~AL~nla~ 473 (576)
.|+.+|+++|+++.+
T Consensus 2 ~vR~~aa~aLg~~~~ 16 (30)
T smart00567 2 LVRHEAAFALGQLGD 16 (30)
T ss_pred HHHHHHHHHHHHcCC
Confidence 478899999999854
No 164
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=54.58 E-value=83 Score=34.22 Aligned_cols=109 Identities=12% Similarity=0.140 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHc-cCC--ChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHh
Q 041643 178 SRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK-EAA--SPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSV 254 (576)
Q Consensus 178 ~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~-~g~--~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~l 254 (576)
.=..|+..+...-.+.|-.-..|.|+|.++.+++-+. .+- +.+.-..--.+|..|+-|.+..+.+.+.++++.|+++
T Consensus 125 v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~i 204 (379)
T PF06025_consen 125 VFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEI 204 (379)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHH
Confidence 3345677777777765555566778888999999888 542 2444455557788889999999999999999999999
Q ss_pred hcCCCh--hHHH-HHHHHHH----HHhcCChHHHHHHHh
Q 041643 255 LGEAPV--KVQV-AVANLVA----RMAELDSIAQEEFVR 286 (576)
Q Consensus 255 L~s~~~--~vq~-~Aa~aL~----~LA~~~~~~r~~i~~ 286 (576)
+.++.- .++. ..+..|+ .|..+.|..|..+.+
T Consensus 205 f~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 205 FTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred hCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 977531 1222 3444444 488888888877665
No 165
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=3.4e+02 Score=29.18 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCccc----HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHH
Q 041643 174 GQIKSRVDAANELASLARDNNRN----RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVP 249 (576)
Q Consensus 174 G~~e~k~~AA~~L~~La~~~~~~----~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp 249 (576)
.+...|.-+...++.+-.+.|.| ...++.+|-.|.++......+ .++-..|...|..|+..++.-+.|.+..-..
T Consensus 94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfpaaleaiFeSellD 172 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFPAALEAIFESELLD 172 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHHHHHHhcccccCC
Confidence 36678888888888887766644 235567888899999997777 8999999999999999888888777766544
Q ss_pred HH--HHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHH
Q 041643 250 II--VSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLIS 295 (576)
Q Consensus 250 ~L--V~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~ 295 (576)
.+ +.+--..+.-++..+-..+-.+.+-+++.-...-+.|.+..|..
T Consensus 173 dlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLea 220 (524)
T KOG4413|consen 173 DLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEA 220 (524)
T ss_pred hHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHH
Confidence 33 22222223445566666677777777777666666664443333
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.54 E-value=40 Score=39.36 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHH
Q 041643 174 GQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVR 240 (576)
Q Consensus 174 G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~ 240 (576)
++++.|..|..+|+-....++ ...|.-|.||.+..++-++..||.||+--+....+++
T Consensus 567 ~nDDVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred cchHHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 344555555555544443321 1356667777665447777777777766655665555
No 167
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.28 E-value=37 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=16.3
Q ss_pred cCCHHHHHHH-HccCCChHHHHHHHHHHHHhhc
Q 041643 203 EGGILPLLKL-LKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 203 ~GgIppLV~L-L~~g~~~~~q~~AA~AL~nLa~ 234 (576)
.|.|..|+.. ..+++ ++++..|+.||+-++.
T Consensus 550 ~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~ 581 (926)
T COG5116 550 LGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCC 581 (926)
T ss_pred chhHhhhheeecccCc-hHHHHHHHHheeeeEe
Confidence 3445555555 33344 5566666666655554
No 168
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=48.21 E-value=27 Score=36.45 Aligned_cols=58 Identities=24% Similarity=0.376 Sum_probs=46.5
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--------------cccHHHHHhcCCHHHHHHHHcc
Q 041643 158 DPILAWVWSFISTIQMGQIKSRVDAANELASLARDN--------------NRNRKIIVEEGGILPLLKLLKE 215 (576)
Q Consensus 158 ~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~--------------~~~~~~I~~~GgIppLV~LL~~ 215 (576)
+.-..++..++..|..++.+.|..|+.+|.+++... ..|...+.+.||+++|+.+|+.
T Consensus 56 ~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334456778899999999999999999999988431 2356778899999999999965
No 169
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=48.19 E-value=1.3e+02 Score=33.66 Aligned_cols=128 Identities=14% Similarity=0.213 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCc---ccHHHHHhcCCHHHHHHHHccCC----ChH--HHHHHHHHHHHhhcCCch
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNN---RNRKIIVEEGGILPLLKLLKEAA----SPD--AQTAAANALFNIATDQET 238 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~---~~~~~I~~~GgIppLV~LL~~g~----~~~--~q~~AA~AL~nLa~~~~~ 238 (576)
..++...++++|..|.--..-+.+.+| .+++.|.|+=|.+-|=+||.+++ .|+ -+.-+...|.--++.++-
T Consensus 17 ~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pEl 96 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPEL 96 (698)
T ss_pred HHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhh
Confidence 344455577777766554444554322 46888999999999999997642 233 234455555555666643
Q ss_pred --HHHHHHcCCHHHHHHhhcCC-Chh------HHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc
Q 041643 239 --VRFIVDVLGVPIIVSVLGEA-PVK------VQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC 298 (576)
Q Consensus 239 --~~~iv~~Gavp~LV~lL~s~-~~~------vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~ 298 (576)
+..|++ .||.|.+++..+ +++ +.+.+=.+|..+|+..+ ....+...|+|+.+-++-.
T Consensus 97 Ash~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 97 ASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred ccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHh
Confidence 556664 699999999653 344 77778888999998754 4456667789999887543
No 170
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=45.98 E-value=48 Score=33.80 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHhcCCH-------HHHHHHHccCCChHHHHHHHHHHHHhhcCCch-HHHHH-HcCC
Q 041643 177 KSRVDAANELASLARDNNRNRKIIVEEGGI-------LPLLKLLKEAASPDAQTAAANALFNIATDQET-VRFIV-DVLG 247 (576)
Q Consensus 177 e~k~~AA~~L~~La~~~~~~~~~I~~~GgI-------ppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~-~~~iv-~~Ga 247 (576)
.-|.-|..+|.-|+.. +.|.+.|...|-. ..|+++|....++-.+|-|...|.||+...+. .+.+. +.++
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3456678888888875 7888888877653 34566666554488999999999999995544 43443 7889
Q ss_pred HHHHHHhhcCC
Q 041643 248 VPIIVSVLGEA 258 (576)
Q Consensus 248 vp~LV~lL~s~ 258 (576)
|..|+.++.+.
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 171
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=45.76 E-value=62 Score=39.04 Aligned_cols=122 Identities=17% Similarity=0.311 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhh
Q 041643 364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEK 443 (576)
Q Consensus 364 ~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~ 443 (576)
++..+.-+|.++|-.+. + .+|..++.|++-|+..+.-.+.-+-+-++|-+|....+.-.
T Consensus 947 vra~~vvTlakmcLah~----------~-----------LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d 1005 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHD----------R-----------LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD 1005 (1529)
T ss_pred HHHHHHHHHHHHHhhhh----------H-----------HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH
Confidence 34567777777765421 2 34678899998887765444555555677777765555445
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCC---cHhHHHhhccChhHHHHHHHHHHHH
Q 041643 444 RMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDG---VPPLMRLLKISDRAQVHGLVFLCYL 516 (576)
Q Consensus 444 ~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~gg---i~~Lv~LL~~~d~vq~~A~~~L~~l 516 (576)
+.||.+-.-|...++-|++.+..-|+++-. .-++.-.| ++.+..|+...+.+...|=..+..+
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq----------~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQ----------FGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHh----------hhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999963 44555555 3455566665555665555545444
No 172
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=44.42 E-value=93 Score=33.48 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=66.1
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCC-hhHHHHHHHHHHHHhcCChHHHHHH
Q 041643 206 ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAP-VKVQVAVANLVARMAELDSIAQEEF 284 (576)
Q Consensus 206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~-~~vq~~Aa~aL~~LA~~~~~~r~~i 284 (576)
|.-+++=|+.+.+...+..++--|..-..+++-++.+..+|.+..+++.+.... ...-.-++.++..+-..+...-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 445555555555478999999999888889999999999999999999995543 3244445455555444444444555
Q ss_pred HhcCCchhHHHhhc
Q 041643 285 VRENVTRSLISLLC 298 (576)
Q Consensus 285 ~~~g~I~~LV~LL~ 298 (576)
...+....|+.||.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 56677788889987
No 173
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=44.35 E-value=30 Score=32.73 Aligned_cols=30 Identities=40% Similarity=0.563 Sum_probs=22.0
Q ss_pred CC--HHHHHHHHccCCChHHHHHHHHHHHHhhc
Q 041643 204 GG--ILPLLKLLKEAASPDAQTAAANALFNIAT 234 (576)
Q Consensus 204 Gg--IppLV~LL~~g~~~~~q~~AA~AL~nLa~ 234 (576)
|| |.|||++|++.+ +.....|+.+|.+.--
T Consensus 92 GGYNV~~LI~~L~~~d-~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 92 GGYNVQPLIDLLKSDD-EELAEEAAEALKNTLL 123 (154)
T ss_dssp SSTTHHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred CCCcHHHHHHHHcCCc-HHHHHHHHHHHHhhHH
Confidence 66 999999998877 8899999999976544
No 174
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=44.23 E-value=98 Score=35.39 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCC---CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643 421 AMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNR---NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR 497 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~---~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~ 497 (576)
.....-+++||||+.. ...++.|...+... +..++..|.|||.+++.. +++.. .+.|+.
T Consensus 504 ~~~~~~~LkaLgN~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~----~~~~v--------~~~l~~ 565 (618)
T PF01347_consen 504 EEEKIVYLKALGNLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH----CPEKV--------REILLP 565 (618)
T ss_dssp HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----HHHH--------HHHHHH
T ss_pred HHHHHHHHHHhhccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc----CcHHH--------HHHHHH
Confidence 5667789999999952 24789999888666 778999999999988742 12222 234677
Q ss_pred hhcc-Chh--HHHHHHHHHH
Q 041643 498 LLKI-SDR--AQVHGLVFLC 514 (576)
Q Consensus 498 LL~~-~d~--vq~~A~~~L~ 514 (576)
++.. ++. +++.|+..|.
T Consensus 566 I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 566 IFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHH-TTS-HHHHHHHHHHHH
T ss_pred HhcCCCCChhHHHHHHHHHH
Confidence 7764 333 6667776553
No 175
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.82 E-value=6.2e+02 Score=30.02 Aligned_cols=328 Identities=15% Similarity=0.147 Sum_probs=157.1
Q ss_pred CCCcchHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcCcccHHHHHhcCC-HHHHHHHHccCCChHHHHHHHHHHH
Q 041643 154 IASNDPILAWVWSFISTIQMGQI--KSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLKLLKEAASPDAQTAAANALF 230 (576)
Q Consensus 154 ia~~~~i~~~v~~li~~L~~G~~--e~k~~AA~~L~~La~~~~~~~~~I~~~Gg-IppLV~LL~~g~~~~~q~~AA~AL~ 230 (576)
|.+.|-.+.+-.|.-.+|.+|+. -.|..||-+|..|-+.+++ ++.-|+ +.+.+.||.+.+ ..+--.|..-+.
T Consensus 138 iG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~ 212 (938)
T KOG1077|consen 138 IGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDDQH-MGVVTAATSLIE 212 (938)
T ss_pred hccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCccc-cceeeehHHHHH
Confidence 44444444555555678899954 4788999999888876553 234444 889999997766 555555555666
Q ss_pred Hhhc-CCchHHHHHHcCCHHHHHHhh----c-------------CCChhHHHHHHHHHHHHhc-CChHHHHHHHhcCCch
Q 041643 231 NIAT-DQETVRFIVDVLGVPIIVSVL----G-------------EAPVKVQVAVANLVARMAE-LDSIAQEEFVRENVTR 291 (576)
Q Consensus 231 nLa~-~~~~~~~iv~~Gavp~LV~lL----~-------------s~~~~vq~~Aa~aL~~LA~-~~~~~r~~i~~~g~I~ 291 (576)
-|++ +++.-. ++++.-|.-| . -+.+-++......|.+.-. .++..|..+ ++
T Consensus 213 ~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-----~e 282 (938)
T KOG1077|consen 213 ALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-----NE 282 (938)
T ss_pred HHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-----HH
Confidence 6676 343321 2233322222 1 2345566666666665532 223333322 22
Q ss_pred hHHHhhccccccCCCc-chhhhh-HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHH
Q 041643 292 SLISLLCMDIALDLPK-PESAKT-TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACA 369 (576)
Q Consensus 292 ~LV~LL~~~t~~~~~~-~i~~~~-si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa 369 (576)
.|=++|+-. ++.++ .-+.+. +-+. |..... ....+-|++- ++-..|+
T Consensus 283 vl~~iLnk~--~~~~~~k~vq~~na~na-VLFeaI--------------------------~l~~h~D~e~--~ll~~~~ 331 (938)
T KOG1077|consen 283 VLERILNKA--QEPPKSKKVQHSNAKNA-VLFEAI--------------------------SLAIHLDSEP--ELLSRAV 331 (938)
T ss_pred HHHHHHhcc--ccCccccchHhhhhHHH-HHHHHH--------------------------HHHHHcCCcH--HHHHHHH
Confidence 333333211 11111 111110 1111 111100 0000112221 2345666
Q ss_pred HHHHHhhcCCcccc--hhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHH
Q 041643 370 EALWKLSKGCLLSL--WSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIG 447 (576)
Q Consensus 370 ~ALw~La~g~~~~I--avae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~ 447 (576)
..|..+-..-..|| -..|+.-.|-.+ ++.-.+.|.-.+.++..|+.+.+..+..-|+.-|=-+|.... .+.++.
T Consensus 332 ~~Lg~fls~rE~NiRYLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N--ak~IV~ 407 (938)
T KOG1077|consen 332 NQLGQFLSHRETNIRYLALESMCKLASS--EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN--AKQIVA 407 (938)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh--HHHHHH
Confidence 77766544444443 001111011111 111123445567788888754446667667766666653222 345778
Q ss_pred HHHHhhcCCCHHHHHHHHHH----HHhhcCCCCCCCHHHHHHH-------HHCCCcHhHHHhhccChhHHHHHHHHHHHH
Q 041643 448 PLVALLSNRNVDVATEAVIA----LSKFVSPDNFNRSEHSKAI-------IEFDGVPPLMRLLKISDRAQVHGLVFLCYL 516 (576)
Q Consensus 448 ~LV~LL~~~~~~V~~eAa~A----L~nla~~~n~~~~~~~~~I-------v~~ggi~~Lv~LL~~~d~vq~~A~~~L~~l 516 (576)
.|+.-|.+.+..++++-+.- --++|.+=+- -++-+-.+ ++.+.--.+||.+-+.+.+|.+|+..+--.
T Consensus 408 elLqYL~tAd~sireeivlKvAILaEKyAtDy~W-yVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~ 486 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAEKYATDYSW-YVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEY 486 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHH
Confidence 88888877888777774332 2355543221 01211111 123333455666656666776654444322
Q ss_pred hcccCchHHHHhccch
Q 041643 517 ALSAGNSKALEQARAL 532 (576)
Q Consensus 517 al~~~~~~~l~~~~~l 532 (576)
.....-+|.|++.|+.
T Consensus 487 Lq~~a~hE~mVKvggy 502 (938)
T KOG1077|consen 487 LQKPACHENMVKVGGY 502 (938)
T ss_pred HhhhHHHHHHHHhhhh
Confidence 2233345666665544
No 176
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=43.29 E-value=1.1e+02 Score=30.15 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcC------CHHHHHHHHHHHHHHhhcCcccHHHHHhc--CC--HHHHHHHHccCCChHHHHHHHHHHHH
Q 041643 162 AWVWSFISTIQMG------QIKSRVDAANELASLARDNNRNRKIIVEE--GG--ILPLLKLLKEAASPDAQTAAANALFN 231 (576)
Q Consensus 162 ~~v~~li~~L~~G------~~e~k~~AA~~L~~La~~~~~~~~~I~~~--Gg--IppLV~LL~~g~~~~~q~~AA~AL~n 231 (576)
+.++.++..+-.| ..+.-..-|..+.|+++. ++-|+.+.+. +. |..|+-++++.+ ..-+..+|.+|.|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s-~iRR~Gva~~IrN 129 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKS-VIRRGGVAGTIRN 129 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCc-HHHHHHHHHHHHH
Confidence 4555556655553 122235677889999986 7788888754 33 667777777775 8888899999999
Q ss_pred hhcCCchHHHHHHcC
Q 041643 232 IATDQETVRFIVDVL 246 (576)
Q Consensus 232 La~~~~~~~~iv~~G 246 (576)
.+-+.+.+..+....
T Consensus 130 ccFd~~~H~~LL~~~ 144 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDD 144 (192)
T ss_pred hhccHhHHHHhcCch
Confidence 999998888887644
No 177
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=42.24 E-value=31 Score=30.74 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhH
Q 041643 223 TAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKV 262 (576)
Q Consensus 223 ~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~v 262 (576)
..+...|..||..|+--..+|+.|+++.|+.||.+.+.++
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 3566778899999998889999999999999999887654
No 178
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=42.08 E-value=36 Score=36.13 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCHH-HHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhh
Q 041643 163 WVWSFISTIQMGQIK-SRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIA 233 (576)
Q Consensus 163 ~v~~li~~L~~G~~e-~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa 233 (576)
+++.++..||+..+. --.-|+.-++.+-+..|+.+..+.+-||=..+++|+.+++ ++++++|..|+.-+-
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d-~~VkfeAl~a~q~~i 427 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDD-DDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCC-chhhHHHHHHHHHHH
Confidence 566677777776544 2234666688887778899999999999999999999999 999999999987553
No 179
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.63 E-value=1.1e+02 Score=36.99 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=72.6
Q ss_pred HHHHHHHHHhh-------hcCChhhHHHHHHHHHHHhcCCch--hhhC----cH-HHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643 406 AVLDQLLRLIH-------EESDAMLQTPAIRSIGCLAKTFPA--KEKR----MI-GPLVALLSNRNVDVATEAVIALSKF 471 (576)
Q Consensus 406 ~vV~~Ll~lL~-------~~~~~~lq~~a~~aLgnLa~~~~~--~~~~----~I-~~LV~LL~~~~~~V~~eAa~AL~nl 471 (576)
+.+.-++.++. +.+++....-|++.+|+|+..... +-.+ ++ +.+.=.+++..-..+..|||.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 34555555554 123356678899999999964321 1112 22 3333345777777888999999999
Q ss_pred cCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Chh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh
Q 041643 472 VSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SDR-AQVHGLVFLCYLALSAGNSKALEQARALNALE 536 (576)
Q Consensus 472 a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le 536 (576)
++-+ +-.+.+-. .+...-...|.. .+- |++.|+.+|-.+..|.+...+=.++-+-+.++
T Consensus 490 ~~~d-f~d~~~l~-----~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 490 SSID-FKDPNNLS-----EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQ 550 (1010)
T ss_pred Hhcc-CCChHHHH-----HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence 8433 21112111 234445566663 343 99998888877766666664433444444444
No 180
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=40.94 E-value=1.6e+02 Score=32.25 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh---h--------------hCcHHHHHHhhcCCCHHHHHHH
Q 041643 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK---E--------------KRMIGPLVALLSNRNVDVATEA 464 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~---~--------------~~~I~~LV~LL~~~~~~V~~eA 464 (576)
|.+...++.|+.++.+ +++-..+.++++-|..+.++. + +.++|.|++-.++.+.+++..-
T Consensus 267 ~~~~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 267 PLATELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred chHHHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 4455788999998865 566777889999998764331 1 1247999999888877788888
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHH-CCCcHhHHHhhccChh-HHHHHHHHHHHHhccc
Q 041643 465 VIALSKFVSPDNFNRSEHSKAIIE-FDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA 520 (576)
Q Consensus 465 a~AL~nla~~~n~~~~~~~~~Iv~-~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~ 520 (576)
-.||+++...- . . .-.+-+ ..-+|.|++-|...|. ++..++.+|..+..+.
T Consensus 344 L~ALs~ll~~v---P-~-~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKNV---P-K-SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhC---C-H-HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88999887422 1 1 111111 3478888899987777 8888999998886443
No 181
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=40.78 E-value=8e+02 Score=30.42 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=71.2
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch
Q 041643 159 PILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238 (576)
Q Consensus 159 ~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~ 238 (576)
.+.+.+..+...|+.++...+--||..++.+++..+ +..+ + -+|..-++++.-...+..=..|.-||..||.-.--
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-D-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-H-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 456777777888888899999999999999987644 3333 2 26666677665444355666888999999863211
Q ss_pred HHHHHHcCCHHHHHHhhc---------CCChhHHHHHHHHHHHHhcC
Q 041643 239 VRFIVDVLGVPIIVSVLG---------EAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 239 ~~~iv~~Gavp~LV~lL~---------s~~~~vq~~Aa~aL~~LA~~ 276 (576)
.-... ...+|.+++-|. .| .-++..|+..+..++..
T Consensus 414 lps~l-~dVvplI~kaL~Yd~~~G~~s~G-~~VRDaAcY~~WAf~Ra 458 (1133)
T KOG1943|consen 414 LPSLL-EDVVPLILKALHYDVRRGQHSVG-QHVRDAACYVCWAFARA 458 (1133)
T ss_pred chHHH-HHHHHHHHHHhhhhhhhcccccc-cchHHHHHHHHHHHHhc
Confidence 00000 124666666552 22 34666777777767643
No 182
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=40.26 E-value=1.6e+02 Score=27.77 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=33.4
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHH
Q 041643 205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARM 273 (576)
Q Consensus 205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~L 273 (576)
+|..|++.|++.+-..-+..++.|+.++-+....+..--=.-.||.+++.+++.+...++.--+-|+.|
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456666666665423334455566655553221111000122567777777655555555544444433
No 183
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=40.11 E-value=5.6e+02 Score=28.44 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhcC-cccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH-HcCCHHHHHHh
Q 041643 177 KSRVDAANELASLARDN-NRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV-DVLGVPIIVSV 254 (576)
Q Consensus 177 e~k~~AA~~L~~La~~~-~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv-~~Gavp~LV~l 254 (576)
..|..||.+|+.|++.= +.....+.+ +.|+..|.+.+ ...|.-|+-.|...+.....+..-- -..-.+.|.++
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 56889999999988652 222223322 26899998887 7788889999988887433221000 11234566677
Q ss_pred hcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 041643 255 LGEAPVKVQVAVANLVARMAELDSIAQEEFVRENV 289 (576)
Q Consensus 255 L~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~ 289 (576)
|..+....=...+..+..+-......-..+.+.|.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 76432222222233344444322233344556666
No 184
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.35 E-value=2.3e+02 Score=33.63 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHcc---CCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643 203 EGGILPLLKLLKE---AASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 203 ~GgIppLV~LL~~---g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
..+.-|+..+|.+ .....++.+||+++.+|... +-+.+.. ++..|=-+|+++...+|-.|..+|-.+|...|.
T Consensus 240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 4556677776643 22267788999999998762 2222222 788888888888888999999999888876543
No 185
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.72 E-value=1.7e+02 Score=34.46 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS 483 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~ 483 (576)
|..-++.|+..++.+++|.+..+|+-.+|-++-.|.......-.-|.+-|...+.+|++.+-.++..+.-.|
T Consensus 931 c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilag-------- 1002 (1128)
T COG5098 931 CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAG-------- 1002 (1128)
T ss_pred HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHcc--------
Confidence 456688899999988889999999999998876665433344566788888889999999999999876433
Q ss_pred HHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 484 KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 484 ~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
.+-=.|-.+.+..+|...|. +.-.|-..+.-++
T Consensus 1003 -q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 1003 -QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred -ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 12224666777888887776 6555655555554
No 186
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.22 E-value=3.6e+02 Score=30.12 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHc-----cCCCh-H--HHHHHHHHHHHhhcCCchHHHHHHcCCH
Q 041643 177 KSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK-----EAASP-D--AQTAAANALFNIATDQETVRFIVDVLGV 248 (576)
Q Consensus 177 e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~-----~g~~~-~--~q~~AA~AL~nLa~~~~~~~~iv~~Gav 248 (576)
.-|..|...|.-+-.++++++.+...-.||..|++=|. .+... + .-+|-=.+|+.+-..++|+...+...++
T Consensus 241 aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGl 320 (536)
T KOG2734|consen 241 ANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGL 320 (536)
T ss_pred hhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccH
Confidence 45677877887777777889999999999999998773 21112 2 2346666788888899999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCCh--HHHHHHHhcCCchhHHHhh
Q 041643 249 PIIVSVLGEAPVKVQVAVANLVARMAELDS--IAQEEFVRENVTRSLISLL 297 (576)
Q Consensus 249 p~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~--~~r~~i~~~g~I~~LV~LL 297 (576)
....-+++... ..+..+..+|-....+++ .+-..+++.++.+....+.
T Consensus 321 qLm~Lmlr~Kk-~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 321 QLMNLMLREKK-VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHHHHHH-HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 99888887743 334456666665554433 3344555656655555543
No 187
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=37.15 E-value=98 Score=28.40 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=70.5
Q ss_pred ccccHHHHHHHHHhh-hcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-c
Q 041643 117 TNADFKKVFSLLESS-IGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDN-N 194 (576)
Q Consensus 117 ~~~~l~~l~~~L~~~-~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~-~ 194 (576)
+.+.|..++....+. +.+..|-..+...+..... +..+. ..++.+..+|+.+++..+..|..-|-.+..+. +
T Consensus 2 ~~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~k----ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~ 75 (140)
T PF00790_consen 2 PSSSITELIEKATSESLPSPDWSLILEICDLINSS--PDGAK----EAARALRKRLKHGNPNVQLLALTLLDALVKNCGP 75 (140)
T ss_dssp CCSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHH----HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH
T ss_pred CCChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH
Confidence 456677777777543 3344555444332211111 12223 33444578999999999999988888887754 4
Q ss_pred ccHHHHHhcCCHHHHHHHHccCCChH---HHHHHHHHHHHhhc
Q 041643 195 RNRKIIVEEGGILPLLKLLKEAASPD---AQTAAANALFNIAT 234 (576)
Q Consensus 195 ~~~~~I~~~GgIppLV~LL~~g~~~~---~q~~AA~AL~nLa~ 234 (576)
.....|....-+.-|++++.+..... +|+.+...|...+.
T Consensus 76 ~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 76 RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 66677777777889999888764344 78877777766654
No 188
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.96 E-value=4.1e+02 Score=27.23 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccC
Q 041643 423 LQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS 502 (576)
Q Consensus 423 lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~ 502 (576)
....|+..|+.+ ++++..|+|+++++-.+..+-.- ++-+.+ +. ....=+.+-.|-+.+|.+++..+
T Consensus 58 ~~~~a~~LLaq~------re~~A~~~li~l~~~~~~~~~~l----~GD~~t-E~---l~~ilasv~~G~~~~L~~li~~~ 123 (249)
T PF06685_consen 58 LHFYALYLLAQF------REERALPPLIRLFSQDDDFLEDL----FGDFIT-ED---LPRILASVGDGDIEPLKELIEDP 123 (249)
T ss_pred HHHHHHHHHHHH------hhhhhHHHHHHHHcCCcchHHHH----HcchhH-hH---HHHHHHHHhCCCHHHHHHHHhCC
Confidence 455666667666 46789999999997554321110 111111 00 11122334467788888888876
Q ss_pred h--h-HHHHHHHHHHHHhcccCc-hHHHH
Q 041643 503 D--R-AQVHGLVFLCYLALSAGN-SKALE 527 (576)
Q Consensus 503 d--~-vq~~A~~~L~~lal~~~~-~~~l~ 527 (576)
+ . ++..|+.+|..++...+. ++.+.
T Consensus 124 ~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 124 DADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4 3 777888888888765555 44443
No 189
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.93 E-value=1.1e+02 Score=35.71 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHh
Q 041643 175 QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSV 254 (576)
Q Consensus 175 ~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~l 254 (576)
=.|.|..|.+.+.+|+...+.... -.+.-||..+.+.. ..++..|..+|+.|+.+-.. ++.-++.+.+.
T Consensus 386 f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~-~~VRL~ai~aL~~Is~~l~i-----~eeql~~il~~ 454 (823)
T KOG2259|consen 386 FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEI-EVVRLKAIFALTMISVHLAI-----REEQLRQILES 454 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhee-----cHHHHHHHHHH
Confidence 357889999999999987665422 35788999998777 89999999999999876322 23345667777
Q ss_pred hcCCChhHHHHHHHHHHH
Q 041643 255 LGEAPVKVQVAVANLVAR 272 (576)
Q Consensus 255 L~s~~~~vq~~Aa~aL~~ 272 (576)
|.+.+.++++..-..|.+
T Consensus 455 L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 455 LEDRSVDVREALRELLKN 472 (823)
T ss_pred HHhcCHHHHHHHHHHHHh
Confidence 777777776655444443
No 190
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=34.33 E-value=2.9e+02 Score=28.59 Aligned_cols=107 Identities=12% Similarity=0.176 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH-------HHH-HHcCCH
Q 041643 178 SRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV-------RFI-VDVLGV 248 (576)
Q Consensus 178 ~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~-------~~i-v~~Gav 248 (576)
.|.-+...++.|.+.++ +....+.+.+.||..++.++.|+ .-.|--|...+..|-.+.+.- ++. .=.-+.
T Consensus 112 LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gs-elSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL 190 (262)
T PF04078_consen 112 LRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGS-ELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVL 190 (262)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhcc-HHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHH
Confidence 34566677788877533 33445567788999999999999 999999999999988766431 111 111233
Q ss_pred HHHHH-hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643 249 PIIVS-VLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286 (576)
Q Consensus 249 p~LV~-lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~ 286 (576)
..+|. +.+.++.++-.....+-..|+. ++..|+.+.+
T Consensus 191 ~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~ 228 (262)
T PF04078_consen 191 NKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH
Confidence 34443 3356778888999999999995 5788887764
No 191
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.22 E-value=1.7e+02 Score=28.28 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
...++.++++..+.+ ..+..-|+..|+-+.+.+=..-...||.||.|..+.++.++..|-..+..+.
T Consensus 7 Qryl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 7 QRYLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 345666776555544 7888899999988876433222356899999999999999999998888775
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=32.04 E-value=1.4e+02 Score=35.26 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCH--HHHHHhhcCCCh-h
Q 041643 185 ELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGV--PIIVSVLGEAPV-K 261 (576)
Q Consensus 185 ~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gav--p~LV~lL~s~~~-~ 261 (576)
.|.+...+++++++.+++.||...+.+.++.-+..+.+..+..-|.|++.-.+.+......--+ ..+-.+++.-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6778888889999999999999999999997666889999999999999855443321111111 233334544333 6
Q ss_pred HHHHHHHHHHHHhcCCh
Q 041643 262 VQVAVANLVARMAELDS 278 (576)
Q Consensus 262 vq~~Aa~aL~~LA~~~~ 278 (576)
.-..|+..|+.+..+++
T Consensus 574 rsY~~~siLa~ll~~~~ 590 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSE 590 (699)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 67778888888877653
No 193
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=31.97 E-value=2.2e+02 Score=30.62 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=64.8
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643 165 WSFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK-EAASPDAQTAAANALFNIATDQETVRFI 242 (576)
Q Consensus 165 ~~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~-~g~~~~~q~~AA~AL~nLa~~~~~~~~i 242 (576)
..++..|..+ +...|..++..|+.-+.+ +..+..+...|.+..+++.+. .++.+..-..++.+++-|+.+...-..+
T Consensus 24 ~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 24 EYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 3345666644 556788889999998885 788999999999999999994 3441344555666666666666555555
Q ss_pred HHcCCHHHHHHhhc
Q 041643 243 VDVLGVPIIVSVLG 256 (576)
Q Consensus 243 v~~Gavp~LV~lL~ 256 (576)
-+.+....++++|+
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 56667777788887
No 194
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=31.53 E-value=8.5e+02 Score=29.75 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhcCC--hhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643 407 VLDQLLRLIHEESD--AMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALS 469 (576)
Q Consensus 407 vV~~Ll~lL~~~~~--~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~ 469 (576)
+|+.|+.+=.++++ ..+.+-|+.+++.|.+..|-+ ...+|..|...|+++.--|++||+.+=.
T Consensus 951 lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 951 LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 55666655444443 457788999999998844422 2357899999999999999999987644
No 195
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=31.02 E-value=3.4e+02 Score=23.70 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=45.2
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHH
Q 041643 206 ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANL 269 (576)
Q Consensus 206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~a 269 (576)
+..|++-....+ ...++.+-.-|..|..++.....+.+-|++..|-++=+.-++..+......
T Consensus 32 l~~LleWFnf~~-~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 32 LKQLLEWFNFPP-VPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHhCCCC-CccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444444445 567888888889999999999999999999998887555556666555443
No 196
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=28.77 E-value=1.3e+02 Score=34.20 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc---CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643 421 AMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS---NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR 497 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~---~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~ 497 (576)
.....-.+++|||+.. ...++.|...+. ..+..++..|.|||.+++... ++. .-+.|++
T Consensus 460 ~~~~~~~LkaLGN~g~------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~----p~~--------v~~~l~~ 521 (574)
T smart00638 460 EEEIQLYLKALGNAGH------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD----PRK--------VQEVLLP 521 (574)
T ss_pred chheeeHHHhhhccCC------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC----chH--------HHHHHHH
Confidence 4445678999999963 235666766664 235679999999999987321 111 2234567
Q ss_pred hhccC-hh--HHHHHHHHHH
Q 041643 498 LLKIS-DR--AQVHGLVFLC 514 (576)
Q Consensus 498 LL~~~-d~--vq~~A~~~L~ 514 (576)
+..+. +. ++..|+..|.
T Consensus 522 i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 522 IYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHcCCCCChHHHHHHHHHHH
Confidence 76543 32 6777777553
No 197
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=28.70 E-value=3.5e+02 Score=27.99 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhcCcccHHHHHhcCCHH-HHHHHHccC----CChHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHH
Q 041643 181 DAANELASLARDNNRNRKIIVEEGGIL-PLLKLLKEA----ASPDAQTAAANALFNIATDQ--ETVRFIVDVLGVPIIVS 253 (576)
Q Consensus 181 ~AA~~L~~La~~~~~~~~~I~~~GgIp-pLV~LL~~g----~~~~~q~~AA~AL~nLa~~~--~~~~~iv~~Gavp~LV~ 253 (576)
+|..-|-.++++ ++.|....++- || -|-.+|..+ ..+-.+--+...++.|.++. +..+.+...++||..++
T Consensus 98 naL~LlQcvASH-pdTr~~FL~A~-iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 98 NALALLQCVASH-PDTRRAFLRAH-IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHhcC-cchHHHHHHcc-ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 555566677776 67888887753 44 344455433 21345667888888888854 45678889999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCChH
Q 041643 254 VLGEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 254 lL~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
.+..|++..|..|+..+..+-.++..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~G 201 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVG 201 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999998888876643
No 198
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.06 E-value=2.3e+02 Score=24.35 Aligned_cols=64 Identities=9% Similarity=0.163 Sum_probs=45.0
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHhcCCc-h--hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643 409 DQLLRLIHEESDAMLQTPAIRSIGCLAKTFP-A--KEKRMIGPLVALLSNRNVDVATEAVIALSKFVS 473 (576)
Q Consensus 409 ~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~-~--~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~ 473 (576)
+..+..|.+.. +.++..++.-|..|.+... . ...+++.-+...|++.+..|--+|..+|+.++.
T Consensus 6 ~~al~~L~dp~-~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 6 QEALSDLNDPL-PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHccCCC-cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34455555544 5677888888888876554 1 123456667778888899999999999998874
No 199
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=27.79 E-value=1e+02 Score=31.14 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHHhhcCcccHHHHHhcC--CHHHHHHHHccCC---ChHHHHHHHHHHHHhhcCC-chH-HHHHHcC
Q 041643 174 GQIKSRVDAANELASLARDNNRNRKIIVEEG--GILPLLKLLKEAA---SPDAQTAAANALFNIATDQ-ETV-RFIVDVL 246 (576)
Q Consensus 174 G~~e~k~~AA~~L~~La~~~~~~~~~I~~~G--gIppLV~LL~~g~---~~~~q~~AA~AL~nLa~~~-~~~-~~iv~~G 246 (576)
+..--+.-+.+.+.|+-.+ +..+..+.+.. .|..++..+.... +...|..+|+.+.|+|..- .++ ..=....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3555667788999999875 66777776543 4666666555541 2788999999999998521 111 0000111
Q ss_pred CHHHHHHhh-cC-CChhHHHHHHHHHHHHhcCChHHHH
Q 041643 247 GVPIIVSVL-GE-APVKVQVAVANLVARMAELDSIAQE 282 (576)
Q Consensus 247 avp~LV~lL-~s-~~~~vq~~Aa~aL~~LA~~~~~~r~ 282 (576)
.+..+++.+ .. .++++.....-||++|...++..++
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 244555533 32 5789999999999999976655543
No 200
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.78 E-value=4.5e+02 Score=23.81 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccC---hh
Q 041643 428 IRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS---DR 504 (576)
Q Consensus 428 ~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~---d~ 504 (576)
+..|..+.+..+.....++..|-+-|+++++.++..|...|--+..+.. ..-...|.+..-+..|+.++... +.
T Consensus 21 il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg---~~f~~~i~s~~fl~~l~~l~~~~~~~~~ 97 (133)
T cd03561 21 NLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCG---KPFHLQVADKEFLLELVKIAKNSPKYDP 97 (133)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC---hHHHHHHhhHHHHHHHHHHhCCCCCCCH
Confidence 3444454443333334568888888999999999999888877763321 23446676767777788888653 22
Q ss_pred -HHHHHHHHHHHHhc
Q 041643 505 -AQVHGLVFLCYLAL 518 (576)
Q Consensus 505 -vq~~A~~~L~~lal 518 (576)
|+...+.++-..+.
T Consensus 98 ~Vk~kil~ll~~W~~ 112 (133)
T cd03561 98 KVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 66666666655543
No 201
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=27.50 E-value=4.2e+02 Score=23.97 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHcc--CCChHHHHHHHHHHHHhhc
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKE--AASPDAQTAAANALFNIAT 234 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~--g~~~~~q~~AA~AL~nLa~ 234 (576)
++-+-.+|+.|++..+..|...|-.+..+.. .....|....-+..|++++.. ..++.+|..+...|.+.+.
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444788999999999999888888877653 366777776777789999986 3447899999888888776
No 202
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=26.33 E-value=50 Score=31.22 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=21.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 446 IGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 446 I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
|.|||++|++.+.++..+|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 899999999999999999999999654
No 203
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=25.93 E-value=1.8e+02 Score=33.19 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=64.0
Q ss_pred chHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhc---Cc-------ccHHHHHhcCCHHHHHHHHcc----CCCh
Q 041643 158 DPILAWVWSFISTIQMG----QIKSRVDAANELASLARD---NN-------RNRKIIVEEGGILPLLKLLKE----AASP 219 (576)
Q Consensus 158 ~~i~~~v~~li~~L~~G----~~e~k~~AA~~L~~La~~---~~-------~~~~~I~~~GgIppLV~LL~~----g~~~ 219 (576)
.|-..++..+..++++. +...+..|.-++++|... +. .....+. .-.++.|...|.. ++ .
T Consensus 427 ~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~-~ 504 (618)
T PF01347_consen 427 RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII-EKYVPYLEQELKEAVSRGD-E 504 (618)
T ss_dssp ---HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHHTT--H
T ss_pred CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhH-HHHHHHHHHHHHHHhhccC-H
Confidence 44455566555565542 344555566666665532 10 1122332 2357888888772 34 5
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCC---ChhHHHHHHHHHHHHhcCCh
Q 041643 220 DAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEA---PVKVQVAVANLVARMAELDS 278 (576)
Q Consensus 220 ~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~---~~~vq~~Aa~aL~~LA~~~~ 278 (576)
..+.-+..||+|+.. -..++.|..++... +..++..|.++|..++...+
T Consensus 505 ~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 505 EEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp HHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 777889999999964 13677888888665 57899999999998886655
No 204
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.42 E-value=3.8e+02 Score=24.38 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CcccHHHHHhcCCHHHHHHHHccCCChH-HHHHHHHHHHHhhc
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARD-NNRNRKIIVEEGGILPLLKLLKEAASPD-AQTAAANALFNIAT 234 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~-~~~~~~~I~~~GgIppLV~LL~~g~~~~-~q~~AA~AL~nLa~ 234 (576)
++.+-.+|+++++..+..|..-|-.+..+ .+.....|...+-+..|+++++...... ++......+...+.
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 44457899999999999998888877765 3556678888888999999998764334 78877777776665
No 205
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=24.54 E-value=3.4e+02 Score=30.72 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=66.5
Q ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHH----HHHHHHHHhhhcCC
Q 041643 345 GQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKA----VLDQLLRLIHEESD 420 (576)
Q Consensus 345 g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~----vV~~Ll~lL~~~~~ 420 (576)
|.|.+. .....||..| .+..|...+..|-+|+..-..+++.- -.++|.|-+-...- .-.-|+..|..+.+
T Consensus 47 g~p~l~-~l~lkd~~~~--~ra~alqv~~~~l~gsk~fls~a~~~---~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~ 120 (728)
T KOG4535|consen 47 GSPSLM-TLTLKDPSPK--TRACALQVLSAILEGSKQFLSVAEDT---SDHAFTPFSVMIACSIRELHRCLLLALVAESS 120 (728)
T ss_pred CCceee-EEecCCCChh--HHHHHHHHHHHHHHhhHHHHHHHhcc---CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566532 2334566554 33556666666666654333333321 11334332211111 11234555544455
Q ss_pred hhhHHHHHHHHHHHhcCCchh--hh----CcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643 421 AMLQTPAIRSIGCLAKTFPAK--EK----RMIGPLVALLSNRNVDVATEAVIALSKFVSP 474 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~--~~----~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~ 474 (576)
+.+.+.++++|+||+...+-. +- .+...+-.+.++.++.|...+-..++-+.++
T Consensus 121 ~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 121 SQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred chhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 788999999999998755431 11 2333444455688888888877777766543
No 206
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.48 E-value=1.5e+02 Score=34.92 Aligned_cols=54 Identities=26% Similarity=0.219 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC
Q 041643 422 MLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPD 475 (576)
Q Consensus 422 ~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~ 475 (576)
.+|..-+.-|-..+...++...+.|..+..+|.+.+..|.-|||.+|-.+..+.
T Consensus 221 ~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 221 SLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 344433333444444445556678999999999999999999999998886543
No 207
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=21.58 E-value=3.8e+02 Score=27.44 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-----CchHHHHHHcCCHHHHHHhhcCCC--hhHHHHHHHHHHHHhc
Q 041643 203 EGGILPLLKLLKEAASPDAQTAAANALFNIATD-----QETVRFIVDVLGVPIIVSVLGEAP--VKVQVAVANLVARMAE 275 (576)
Q Consensus 203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-----~~~~~~iv~~Gavp~LV~lL~s~~--~~vq~~Aa~aL~~LA~ 275 (576)
.-+.|++++|++.+. . .+-.+..+ -...-+.+-.|-+.+|-+++.+++ +=++..|..+|..++.
T Consensus 72 ~~A~~~li~l~~~~~-~--------~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~ 142 (249)
T PF06685_consen 72 ERALPPLIRLFSQDD-D--------FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVH 142 (249)
T ss_pred hhhHHHHHHHHcCCc-c--------hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 458999999997655 2 12222222 112234556788999999998865 4588889999999999
Q ss_pred CChHHHHHHHh
Q 041643 276 LDSIAQEEFVR 286 (576)
Q Consensus 276 ~~~~~r~~i~~ 286 (576)
.++..|+.+.+
T Consensus 143 ~~~~~Re~vi~ 153 (249)
T PF06685_consen 143 EGPISREEVIQ 153 (249)
T ss_pred cCCCCHHHHHH
Confidence 88888887654
No 208
>PLN03205 ATR interacting protein; Provisional
Probab=20.39 E-value=3.3e+02 Score=29.98 Aligned_cols=160 Identities=20% Similarity=0.239 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHH----hcC---Cch-hhhCcHHHHHHhh-----cCCCHHHHHHHHHHHHhh
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCL----AKT---FPA-KEKRMIGPLVALL-----SNRNVDVATEAVIALSKF 471 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnL----a~~---~~~-~~~~~I~~LV~LL-----~~~~~~V~~eAa~AL~nl 471 (576)
+.+++.|+.+-.-+. ..+..-++|.|-.+ +.+ |.+ .+.+.+ .|.+++ .++++.|+-||.--.--+
T Consensus 322 qtLlEaLLdLC~v~n-~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 322 KSLVEPLLDLCKAET-AVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred HHHHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 345666666554333 44444455544333 211 111 122222 344443 466777888876443333
Q ss_pred cCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh--HHHHHHHHHHHHhcccCchHHHH----------------------
Q 041643 472 VSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR--AQVHGLVFLCYLALSAGNSKALE---------------------- 527 (576)
Q Consensus 472 a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~--vq~~A~~~L~~lal~~~~~~~l~---------------------- 527 (576)
.-..|. .-.+......-...-+-+||+.... ||+.|+.+| |+.+|.++.-.+.
T Consensus 400 lmssna--~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLL-fLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st 476 (652)
T PLN03205 400 VMSTDA--YTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLF-YLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFA 476 (652)
T ss_pred hhccch--hHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHH-HHHHcCcHHHHHHhcCCcccccccccccccccccc
Confidence 322221 2345556555667777889976543 999999876 5556665532221
Q ss_pred hccchhhHhhhhcccCCC--CCcHHHHHHHHHHHHHhhcC-CCCC
Q 041643 528 QARALNALEGAARTVLPQ--HPELRDLFAQAIYHLTLYQA-GSHP 569 (576)
Q Consensus 528 ~~~~l~~Le~~~~~~~~q--~~~~~~l~~~a~~~l~~y~~-~~~~ 569 (576)
..|+-..|+|+...--.- ....-+|...++..|....+ |-.|
T Consensus 477 ~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~G 521 (652)
T PLN03205 477 LEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSG 521 (652)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCC
Confidence 122233344332111100 11233577888888887766 6656
No 209
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.16 E-value=6.8e+02 Score=23.56 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=48.2
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC--HHHHHHhhcCC-ChhHHHHHHHHHHHHh---cCChH
Q 041643 206 ILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG--VPIIVSVLGEA-PVKVQVAVANLVARMA---ELDSI 279 (576)
Q Consensus 206 IppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga--vp~LV~lL~s~-~~~vq~~Aa~aL~~LA---~~~~~ 279 (576)
+..+..||.+.+ +..+..++..+.-+.. ....+.+.++|. +..++.+|+.. +..+.+.+..+|..|- .+.|+
T Consensus 27 ~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~-~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKS-AYSRWAGLCLLKVTVE-QCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCC-hhhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456778888877 6777655544444433 222566666665 78888888764 3566777777776654 34455
Q ss_pred HHHHHHh
Q 041643 280 AQEEFVR 286 (576)
Q Consensus 280 ~r~~i~~ 286 (576)
...++..
T Consensus 105 l~Rei~t 111 (165)
T PF08167_consen 105 LTREIAT 111 (165)
T ss_pred hHHHHhh
Confidence 4333433
No 210
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.14 E-value=2.8e+02 Score=24.72 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=33.6
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643 205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV 245 (576)
Q Consensus 205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~ 245 (576)
||+-||+-|.+.+ +++-..|...|...+.+++.-+.++..
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 6889999998888 899999999999999877766666654
Done!