Query 041643
Match_columns 576
No_of_seqs 303 out of 1011
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 3.7E-41 1.3E-45 370.8 24.6 368 164-565 59-478 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.1E-39 3.7E-44 360.2 27.5 368 164-565 78-497 (529)
3 1xm9_A Plakophilin 1; armadill 100.0 4.5E-35 1.5E-39 318.4 28.0 343 165-567 5-451 (457)
4 3now_A UNC-45 protein, SD10334 100.0 2.4E-33 8.2E-38 322.0 26.1 400 117-561 329-778 (810)
5 3l6x_A Catenin delta-1; cateni 100.0 2.2E-32 7.5E-37 304.6 27.7 378 118-531 47-489 (584)
6 3nmw_A APC variant protein; AR 100.0 3.7E-32 1.3E-36 286.9 25.4 268 177-523 47-339 (354)
7 3l6x_A Catenin delta-1; cateni 100.0 2.6E-32 9E-37 304.0 25.3 310 166-536 52-401 (584)
8 4b8j_A Importin subunit alpha- 100.0 1.2E-31 4.2E-36 293.9 29.5 374 164-566 76-497 (528)
9 3nmz_A APC variant protein; pr 100.0 2.5E-32 8.6E-37 297.1 21.5 262 181-522 167-454 (458)
10 3nmz_A APC variant protein; pr 100.0 1.2E-31 4E-36 291.9 21.7 313 168-562 76-450 (458)
11 1xm9_A Plakophilin 1; armadill 100.0 4E-31 1.4E-35 287.3 21.4 371 120-520 3-451 (457)
12 1wa5_B Importin alpha subunit; 100.0 3.2E-30 1.1E-34 283.3 28.1 376 163-566 88-511 (530)
13 3tpo_A Importin subunit alpha- 100.0 4.5E-30 1.6E-34 283.3 28.0 339 114-538 114-476 (529)
14 3ul1_B Importin subunit alpha- 100.0 4.2E-30 1.4E-34 282.7 25.2 362 91-538 72-457 (510)
15 2jdq_A Importin alpha-1 subuni 100.0 5.2E-29 1.8E-33 265.0 27.7 374 165-566 23-444 (450)
16 1jdh_A Beta-catenin; beta-cate 100.0 1.2E-27 4.2E-32 260.0 27.3 365 115-562 97-527 (529)
17 3now_A UNC-45 protein, SD10334 100.0 7.5E-28 2.6E-32 276.5 23.7 270 164-516 497-780 (810)
18 1jdh_A Beta-catenin; beta-cate 100.0 5.8E-27 2E-31 254.7 27.6 332 117-537 15-362 (529)
19 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-26 4.4E-31 261.3 27.2 369 115-566 94-548 (644)
20 3nmw_A APC variant protein; AR 99.9 4.2E-27 1.4E-31 248.3 20.8 262 219-562 46-334 (354)
21 4hxt_A De novo protein OR329; 99.9 2E-25 6.9E-30 218.5 26.3 239 165-522 5-245 (252)
22 2z6h_A Catenin beta-1, beta-ca 99.9 2.2E-25 7.6E-30 251.2 29.7 333 116-537 11-359 (644)
23 4db8_A Armadillo-repeat protei 99.9 7E-26 2.4E-30 223.5 22.1 234 166-518 16-251 (252)
24 2z6g_A B-catenin; FULL-length, 99.9 5.1E-25 1.8E-29 254.3 24.2 342 115-538 230-642 (780)
25 2z6g_A B-catenin; FULL-length, 99.9 6.1E-24 2.1E-28 245.4 31.4 332 117-537 148-495 (780)
26 1xqr_A HSPBP1 protein; armadil 99.9 8.5E-25 2.9E-29 225.3 19.7 228 219-565 54-287 (296)
27 4b8j_A Importin subunit alpha- 99.9 8.1E-24 2.8E-28 231.8 24.7 361 115-516 113-494 (528)
28 3tt9_A Plakophilin-2; cell adh 99.9 2.2E-24 7.4E-29 214.8 15.2 209 163-436 9-229 (233)
29 1wa5_B Importin alpha subunit; 99.9 6.2E-23 2.1E-27 225.3 27.1 360 115-517 126-509 (530)
30 2jdq_A Importin alpha-1 subuni 99.9 1.1E-22 3.6E-27 216.3 25.4 359 116-517 60-442 (450)
31 4hxt_A De novo protein OR329; 99.9 2.8E-22 9.6E-27 196.1 24.5 216 204-538 2-220 (252)
32 4db6_A Armadillo repeat protei 99.9 3.4E-22 1.2E-26 191.9 22.6 198 202-518 10-209 (210)
33 3tt9_A Plakophilin-2; cell adh 99.9 3.6E-22 1.2E-26 198.8 18.8 211 205-519 9-230 (233)
34 4db8_A Armadillo-repeat protei 99.9 2.4E-21 8.2E-26 190.9 23.1 217 203-538 11-230 (252)
35 1xqr_A HSPBP1 protein; armadil 99.9 4.4E-22 1.5E-26 205.0 16.1 187 174-439 52-241 (296)
36 4db6_A Armadillo repeat protei 99.9 4.7E-21 1.6E-25 183.9 21.9 132 167-299 17-149 (210)
37 3opb_A SWI5-dependent HO expre 99.9 1.7E-20 5.7E-25 212.8 25.0 291 163-518 377-728 (778)
38 3opb_A SWI5-dependent HO expre 99.8 8.9E-20 3E-24 206.9 23.8 327 158-567 330-733 (778)
39 1oyz_A Hypothetical protein YI 99.4 9.9E-12 3.4E-16 124.5 22.5 250 166-560 27-277 (280)
40 1oyz_A Hypothetical protein YI 99.4 2.2E-11 7.6E-16 121.9 19.1 201 200-517 19-220 (280)
41 3ltm_A Alpha-REP4; protein eng 99.4 1.6E-11 5.5E-16 117.8 16.7 187 203-520 18-205 (211)
42 3grl_A General vesicular trans 99.3 6.3E-11 2.1E-15 131.8 23.4 288 163-530 22-355 (651)
43 3ltj_A Alpharep-4; protein eng 99.3 5.5E-11 1.9E-15 113.2 16.4 184 202-516 12-196 (201)
44 3grl_A General vesicular trans 99.3 4.4E-09 1.5E-13 117.1 32.5 297 164-526 124-457 (651)
45 3ltm_A Alpha-REP4; protein eng 99.3 1.9E-10 6.5E-15 110.2 18.4 184 164-474 21-204 (211)
46 3ltj_A Alpharep-4; protein eng 99.3 1.9E-10 6.5E-15 109.4 18.1 181 165-472 17-197 (201)
47 2vgl_B AP-2 complex subunit be 99.1 6.2E-09 2.1E-13 116.2 22.0 280 160-472 119-456 (591)
48 4fdd_A Transportin-1; heat rep 99.0 4.5E-09 1.5E-13 121.6 19.6 319 163-521 129-474 (852)
49 4gmo_A Putative uncharacterize 99.0 5E-09 1.7E-13 119.2 18.0 97 202-299 32-130 (684)
50 1b3u_A Protein (protein phosph 98.9 6.8E-08 2.3E-12 105.3 22.4 299 164-560 283-585 (588)
51 1b3u_A Protein (protein phosph 98.9 1.2E-07 4.2E-12 103.2 21.9 125 166-299 168-292 (588)
52 4fdd_A Transportin-1; heat rep 98.8 3E-08 1E-12 114.7 16.7 355 163-564 360-744 (852)
53 2vgl_B AP-2 complex subunit be 98.8 9.5E-08 3.3E-12 106.6 18.3 258 167-519 54-312 (591)
54 4gmo_A Putative uncharacterize 98.8 1.9E-08 6.5E-13 114.4 11.5 130 168-299 40-193 (684)
55 1ibr_B P95, importin beta-1 su 98.7 6.3E-07 2.1E-11 94.5 18.8 293 163-521 129-440 (462)
56 1w63_A Adapter-related protein 98.6 3.4E-06 1.2E-10 94.6 24.2 126 160-298 140-281 (618)
57 1w63_A Adapter-related protein 98.5 1.5E-05 5.1E-10 89.4 23.8 247 168-519 76-343 (618)
58 1ibr_B P95, importin beta-1 su 98.4 6.1E-06 2.1E-10 86.9 17.2 235 163-473 173-437 (462)
59 2bpt_A Importin beta-1 subunit 98.3 2.7E-05 9.3E-10 88.9 21.6 313 163-563 370-712 (861)
60 1qgr_A Protein (importin beta 98.3 2.7E-05 9.1E-10 89.1 20.0 277 163-519 173-480 (876)
61 1qgr_A Protein (importin beta 98.3 5.9E-05 2E-09 86.3 22.7 292 163-521 129-440 (876)
62 2bpt_A Importin beta-1 subunit 98.1 0.00019 6.6E-09 81.8 22.4 269 163-522 225-533 (861)
63 2vgl_A Adaptor protein complex 98.0 0.0026 9.1E-08 71.3 28.4 281 160-519 109-434 (621)
64 4ady_A RPN2, 26S proteasome re 98.0 0.0011 3.9E-08 77.1 25.4 199 205-518 473-676 (963)
65 1ho8_A Vacuolar ATP synthase s 97.7 0.00061 2.1E-08 73.6 17.0 259 166-472 171-475 (480)
66 1te4_A Conserved protein MTH18 97.7 2.4E-05 8.3E-10 69.4 3.9 85 408-514 44-129 (131)
67 1u6g_C TIP120 protein, CAND1; 97.6 0.00042 1.4E-08 83.1 15.5 272 164-522 8-288 (1230)
68 1te4_A Conserved protein MTH18 97.6 5.5E-05 1.9E-09 67.0 5.4 86 165-272 45-130 (131)
69 2qk2_A LP04448P; mini spindles 97.5 0.002 6.9E-08 62.7 16.1 175 208-472 19-204 (242)
70 2db0_A 253AA long hypothetical 97.4 0.018 6.2E-07 54.7 19.7 213 202-517 30-245 (253)
71 1u6g_C TIP120 protein, CAND1; 97.3 0.0016 5.5E-08 78.1 14.2 226 161-472 47-283 (1230)
72 4ady_A RPN2, 26S proteasome re 97.3 0.022 7.6E-07 66.4 22.8 235 165-471 475-717 (963)
73 3b2a_A TON_1937, putative unch 97.3 0.0098 3.4E-07 58.5 16.7 184 204-474 33-219 (265)
74 2qk2_A LP04448P; mini spindles 97.1 0.01 3.5E-07 57.6 15.0 185 168-439 21-208 (242)
75 2vgl_A Adaptor protein complex 97.0 0.017 5.9E-07 64.7 17.7 252 168-521 80-361 (621)
76 2db0_A 253AA long hypothetical 96.9 0.076 2.6E-06 50.5 18.5 213 163-473 33-246 (253)
77 2qk1_A Protein STU2; STU2P, XM 96.8 0.011 3.8E-07 58.4 12.5 105 168-275 22-133 (249)
78 3tjz_B Coatomer subunit gamma; 96.7 0.089 3E-06 54.9 19.2 242 168-521 74-319 (355)
79 2iw3_A Elongation factor 3A; a 96.6 0.085 2.9E-06 62.0 20.6 302 165-565 17-327 (986)
80 3tjz_B Coatomer subunit gamma; 96.1 0.037 1.3E-06 57.8 12.0 106 160-277 102-207 (355)
81 3b2a_A TON_1937, putative unch 95.8 0.34 1.1E-05 47.7 16.7 136 356-523 45-184 (265)
82 3dad_A FH1/FH2 domain-containi 95.6 0.076 2.6E-06 54.8 11.9 134 163-298 119-264 (339)
83 1ho8_A Vacuolar ATP synthase s 94.9 0.51 1.7E-05 50.9 15.9 70 444-517 395-475 (480)
84 2qk1_A Protein STU2; STU2P, XM 94.8 0.27 9.2E-06 48.3 12.7 143 364-523 77-225 (249)
85 2iw3_A Elongation factor 3A; a 90.4 12 0.00043 43.8 20.0 208 175-471 108-322 (986)
86 1wa5_C Importin alpha RE-expor 88.2 3.5 0.00012 47.9 13.5 100 174-276 417-526 (960)
87 3dad_A FH1/FH2 domain-containi 88.1 1.4 4.6E-05 45.5 8.6 119 405-524 159-292 (339)
88 4ffb_C Protein STU2; tubulin f 85.6 18 0.00061 35.2 15.1 179 209-471 14-210 (278)
89 2x1g_F Cadmus; transport prote 83.4 15 0.00051 42.5 15.5 91 175-276 477-573 (971)
90 2x19_B Importin-13; nuclear tr 83.1 36 0.0012 39.0 18.5 150 219-453 463-621 (963)
91 1lrv_A LRV, leucine-rich repea 81.7 0.78 2.7E-05 45.2 3.2 45 410-469 198-242 (244)
92 2x1g_F Cadmus; transport prote 74.7 49 0.0017 38.1 16.1 167 219-471 478-661 (971)
93 4hat_C Exportin-1; heat repeat 74.5 7.2 0.00025 46.1 9.0 105 175-285 466-576 (1023)
94 4hat_C Exportin-1; heat repeat 70.1 13 0.00044 44.0 9.8 112 405-524 494-624 (1023)
95 1wa5_C Importin alpha RE-expor 67.0 36 0.0012 39.4 12.7 91 421-519 419-526 (960)
96 3u0r_A Apoptosis inhibitor 5; 67.0 20 0.0007 38.6 9.6 92 171-274 37-128 (507)
97 2f31_A Diaphanous protein homo 66.0 22 0.00076 34.1 9.1 108 168-277 6-127 (233)
98 3m1i_C Exportin-1; heat repeat 61.6 27 0.00094 40.8 10.4 51 423-473 516-569 (1049)
99 2of3_A ZYG-9; multifunctional 61.0 23 0.00078 35.1 8.2 107 405-523 131-241 (266)
100 1lsh_A Lipovitellin (LV-1N, LV 58.9 30 0.001 40.9 10.1 91 405-514 439-539 (1056)
101 1lsh_A Lipovitellin (LV-1N, LV 58.5 1.6E+02 0.0053 34.8 16.1 103 161-278 390-510 (1056)
102 2x19_B Importin-13; nuclear tr 56.2 41 0.0014 38.5 10.5 92 421-519 463-557 (963)
103 3eg5_B Protein diaphanous homo 55.4 74 0.0025 33.0 11.4 109 168-277 72-193 (383)
104 2f31_A Diaphanous protein homo 48.3 1.8E+02 0.0063 27.5 13.4 119 421-539 68-208 (233)
105 3ebb_A Phospholipase A2-activa 44.4 71 0.0024 32.1 8.8 104 175-282 161-270 (304)
106 2bnx_A Diaphanous protein homo 44.2 1.1E+02 0.0037 31.7 10.5 108 168-277 10-131 (386)
107 2bnx_A Diaphanous protein homo 44.1 2.8E+02 0.0097 28.5 14.3 118 421-538 72-211 (386)
108 3eg5_B Protein diaphanous homo 44.0 2.9E+02 0.0097 28.5 14.6 119 421-539 134-274 (383)
109 2fv2_A RCD1 required for cell 42.0 1.9E+02 0.0066 28.5 11.1 107 178-286 118-234 (268)
110 3m62_A Ubiquitin conjugation f 41.4 9.4 0.00032 44.5 1.9 89 45-133 859-959 (968)
111 3u0r_A Apoptosis inhibitor 5; 39.3 97 0.0033 33.4 9.1 73 421-504 42-114 (507)
112 3l9t_A Putative uncharacterize 38.6 2.7E+02 0.0093 27.0 11.5 39 247-285 179-217 (240)
113 4ffb_C Protein STU2; tubulin f 38.4 2.7E+02 0.0092 26.5 18.3 107 168-275 15-132 (278)
114 1lrv_A LRV, leucine-rich repea 33.7 22 0.00075 34.7 2.9 62 208-270 150-218 (244)
115 3m1i_C Exportin-1; heat repeat 30.7 1.1E+02 0.0036 35.8 8.6 99 175-276 466-570 (1049)
116 3zyq_A Hepatocyte growth facto 30.2 71 0.0024 30.5 5.9 111 117-233 5-117 (226)
117 2of3_A ZYG-9; multifunctional 29.9 93 0.0032 30.7 6.8 65 406-471 167-234 (266)
118 3oc3_A Helicase MOT1, MOT1; re 29.1 44 0.0015 37.1 4.5 84 178-274 244-327 (800)
119 3gs3_A Symplekin, LD45768P; he 28.2 1.9E+02 0.0064 28.3 8.6 66 405-471 52-117 (257)
120 3ebb_A Phospholipase A2-activa 27.2 2.2E+02 0.0077 28.3 9.2 57 219-275 162-220 (304)
121 2fv2_A RCD1 required for cell 24.1 2.5E+02 0.0087 27.6 8.5 96 181-277 75-176 (268)
122 3ibv_A Exportin-T; karyopherin 21.1 2.1E+02 0.0072 33.3 8.7 66 406-472 490-565 (980)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.7e-41 Score=370.83 Aligned_cols=368 Identities=18% Similarity=0.209 Sum_probs=280.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh-hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRF 241 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La-~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~ 241 (576)
+.++|..|++++.+.+..|+..++.|. ....+..+.|++.|+||+||+||++++++..|++|||||+||+. ++++++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 566799999999999999999998754 33345578999999999999999866558999999999999987 5688999
Q ss_pred HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM 321 (576)
Q Consensus 242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~ 321 (576)
|+++|+||.|+++|++++.+++++|+|+|+|||.+++++|+.+.+.|++++|+.+|.+......... .+....+.
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~-----~~~~a~~~ 213 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-----YLRNLTWT 213 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH-----HHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH-----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986532111110 11111111
Q ss_pred hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643 322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS 401 (576)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s 401 (576)
..+.+. +....+.+....++++.+.+.....|+++ +..|+|||++|+.++.+++ +...
T Consensus 214 L~nl~~----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v----~~~A~~aL~~L~~~~~~~~----------~~i~---- 271 (510)
T 3ul1_B 214 LSNLCR----NKNPAPPLDAVEQILPTLVRLLHHNDPEV----LADSCWAISYLTDGPNERI----------EMVV---- 271 (510)
T ss_dssp HHHHHC----CCSSCCCHHHHHHHHHHHHHHTTCSCHHH----HHHHHHHHHHHTSSCHHHH----------HHHH----
T ss_pred HHHHhh----cccchhHHHHHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHHhhchhhhH----------HHHH----
Confidence 111110 00001111000112333323345567765 5789999999998765432 1111
Q ss_pred hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDN 476 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n 476 (576)
..++++.|+.+|.+.+ +.++.+++++||||+..... .+.|++++|+.+|++.+..++++|+|+|+|++.+.
T Consensus 272 --~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~- 347 (510)
T 3ul1_B 272 --KKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR- 347 (510)
T ss_dssp --TTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC-
T ss_pred --hcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-
Confidence 1246888999998765 89999999999999865433 24588999999999999999999999999998643
Q ss_pred CCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc--hHHHHhccchhhH------------------
Q 041643 477 FNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN--SKALEQARALNAL------------------ 535 (576)
Q Consensus 477 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~--~~~l~~~~~l~~L------------------ 535 (576)
.++++.+++.|++++|+++|++++. +|..|+++|++++.+... ...+.+.|++++|
T Consensus 348 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~a 424 (510)
T 3ul1_B 348 ---QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424 (510)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 6899999999999999999999887 999999999999764322 2345555555433
Q ss_pred ---------------------h---hhhcccCCCCCcHHHHHHHHHHHHHhhcC
Q 041643 536 ---------------------E---GAARTVLPQHPELRDLFAQAIYHLTLYQA 565 (576)
Q Consensus 536 ---------------------e---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~ 565 (576)
+ |+++++.+|+|+++++|++|..+|+.||+
T Consensus 425 L~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 425 ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 1 45677889999999999999999999998
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.1e-39 Score=360.25 Aligned_cols=368 Identities=18% Similarity=0.214 Sum_probs=281.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh-hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLA-RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRF 241 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La-~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~ 241 (576)
+.+++..+++++.+.+..|+..+..|. ..+.+....|++.|+||+||++|+.++++..|++|+|||+||+.+ ++++..
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345589999999999999999998754 444456788999999999999998765599999999999999985 577889
Q ss_pred HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM 321 (576)
Q Consensus 242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~ 321 (576)
++++|+||.|+.+|++++.+++++|+|+|+|||.+++++|+.+.+.|++++|+.+|........... .+....+.
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~-----~~~~a~~~ 232 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG-----YLRNLTWT 232 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH-----HHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH-----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999976532111100 11111111
Q ss_pred hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643 322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS 401 (576)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s 401 (576)
..+.+. +....+.+....++++.+.+.....|+++ +.+|+|||++|+.++.+++ +...
T Consensus 233 L~nl~~----~~~~~~~~~~~~~~lp~L~~LL~~~~~~v----~~~a~~aL~~l~~~~~~~~----------~~v~---- 290 (529)
T 3tpo_A 233 LSNLCR----NKNPAPPLDAVEQILPTLVRLLHHNDPEV----LADSCWAISYLTDGPNERI----------EMVV---- 290 (529)
T ss_dssp HHHHHC----CCTTCCCHHHHHHHHHHHHHHTTSSCHHH----HHHHHHHHHHHHSSCHHHH----------HHHH----
T ss_pred HHHHHh----cccchhhHHHHhhHHHHHHHHhcCCcHHH----HHHHHHHHHHhhhhhhhhH----------HHHH----
Confidence 111110 11011111111112333333445567765 5789999999998765432 1111
Q ss_pred hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDN 476 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n 476 (576)
..++++.|+.+|.+.+ +.++.+|+++||||+..... .+.|++++|+.+|++.+.+++++|+|+|+|++.+.
T Consensus 291 --~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~- 366 (529)
T 3tpo_A 291 --KKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR- 366 (529)
T ss_dssp --TTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC-
T ss_pred --hccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc-
Confidence 1256888999998765 89999999999999865433 24589999999999999999999999999998643
Q ss_pred CCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC--chHHHHhccchhhH------------------
Q 041643 477 FNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG--NSKALEQARALNAL------------------ 535 (576)
Q Consensus 477 ~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~--~~~~l~~~~~l~~L------------------ 535 (576)
.+++..+++.|++|+|+.+|.+++. +|..|+++|++++.+.. ....+.+.|++++|
T Consensus 367 ---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~a 443 (529)
T 3tpo_A 367 ---QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 443 (529)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred ---HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHH
Confidence 6899999999999999999999887 99999999999975432 22445666665543
Q ss_pred ---------------------h---hhhcccCCCCCcHHHHHHHHHHHHHhhcC
Q 041643 536 ---------------------E---GAARTVLPQHPELRDLFAQAIYHLTLYQA 565 (576)
Q Consensus 536 ---------------------e---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~ 565 (576)
| |+++++.+|+|+++++|++|..+|+.||+
T Consensus 444 L~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 444 ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 1 45677889999999999999999999997
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.5e-35 Score=318.42 Aligned_cols=343 Identities=16% Similarity=0.136 Sum_probs=262.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIV 243 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv 243 (576)
..++..|++++.+.|..|+.+|.+|+..+++++..|++.|+||+||++|++++ +..|+.|+|+|.||+.+ ++++..|+
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34588999999999999999999999877777889999999999999999988 99999999999999996 89999999
Q ss_pred HcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643 244 DVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322 (576)
Q Consensus 244 ~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~ 322 (576)
++|+||+|+++|+ ++++++++.|+|+|+||+.+ +.+|..+.+ |+||+|+.+|.... +
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~----s---------------- 141 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF----S---------------- 141 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH----H----------------
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc----c----------------
Confidence 9999999999998 88999999999999999987 789999999 99999999994310 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-hhccc-ch----------
Q 041643 323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-WSAES-NA---------- 390 (576)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-avae~-~~---------- 390 (576)
. ...+ -.. +.++..|++ +...|+|||++||.+ +++. .+.+. +.
T Consensus 142 ~---------------~~~~---~~~--~~~e~~~~~----v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 142 G---------------WCDG---NSN--MSREVVDPE----VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp T---------------CC--------------CCCHH----HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred c---------------cccC---ccc--hhcccccHH----HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHh
Confidence 0 0000 001 233334554 357899999999976 3331 22221 10
Q ss_pred ---------H--------HHHh------------------------------hhccC-----------------------
Q 041643 391 ---------E--------LRRS------------------------------AFKTN----------------------- 400 (576)
Q Consensus 391 ---------~--------lrr~------------------------------a~k~~----------------------- 400 (576)
. +|.- .|...
T Consensus 197 ~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred hccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 0 0000 00000
Q ss_pred -chhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch----------hhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643 401 -SPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----------KEKRMIGPLVALLSNRNVDVATEAVIALS 469 (576)
Q Consensus 401 -s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----------~~~~~I~~LV~LL~~~~~~V~~eAa~AL~ 469 (576)
.-.-.++++.|+.+|.+++++.++++|+++|+||++.... .+.++||+|+++|.+++++++++|+|+|+
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 0001356788899998877789999999999999874321 13588999999999999999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccCh------h-HHHHHHHHHHHHhcccC-chHHHHhccchhhHhhhhcc
Q 041643 470 KFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISD------R-AQVHGLVFLCYLALSAG-NSKALEQARALNALEGAART 541 (576)
Q Consensus 470 nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d------~-vq~~A~~~L~~lal~~~-~~~~l~~~~~l~~Le~~~~~ 541 (576)
|++.+ .+ .+.+++.|++++||++|..++ . ++..++.+|+++..+.+ +...+.++|+++.|+.+.
T Consensus 357 nls~~-----~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~-- 428 (457)
T 1xm9_A 357 NMSRH-----PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC-- 428 (457)
T ss_dssp HHHTS-----GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHH--
T ss_pred HHhcC-----HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHH--
Confidence 99863 23 445556789999999998763 2 66788999999865443 356788899999998552
Q ss_pred cCCCCCc-HHHHHHHHHHHHHhhcCCC
Q 041643 542 VLPQHPE-LRDLFAQAIYHLTLYQAGS 567 (576)
Q Consensus 542 ~~~q~~~-~~~l~~~a~~~l~~y~~~~ 567 (576)
.+. .+++|.+|..+|+.||.-.
T Consensus 429 ----~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 429 ----RSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp ----HCTTCHHHHHHHHHHHHTTSSST
T ss_pred ----cCCCcHHHHHHHHHHHHHHHcch
Confidence 344 7799999999999999743
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-33 Score=321.99 Aligned_cols=400 Identities=13% Similarity=0.082 Sum_probs=287.2
Q ss_pred ccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Q 041643 117 TNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG--QIKSRVDAANELASL 189 (576)
Q Consensus 117 ~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G--~~e~k~~AA~~L~~L 189 (576)
..+ ++.|..+|.+.... ...|.+++..++.....+++ ..+.+..++..++.+|.++ +.+.+.+|++.|.+|
T Consensus 329 ~~g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~-~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL 406 (810)
T 3now_A 329 EQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF-GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL 406 (810)
T ss_dssp HHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS-TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred HcC-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch-hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 344 58888888543221 23334443322112223444 3567888889999999998 889999999999999
Q ss_pred hhcCcccHHHHH-hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc------------------------------h
Q 041643 190 ARDNNRNRKIIV-EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE------------------------------T 238 (576)
Q Consensus 190 a~~~~~~~~~I~-~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~------------------------------~ 238 (576)
+.+ ++.+..++ +.|+||+||+||++++ +..|+.|+|+|.||+.+.+ +
T Consensus 407 S~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v 484 (810)
T 3now_A 407 TLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484 (810)
T ss_dssp TTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred hCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence 986 56666666 6799999999999988 9999999999999998542 1
Q ss_pred H---HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhH
Q 041643 239 V---RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTT 314 (576)
Q Consensus 239 ~---~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~s 314 (576)
+ +.|+++|+||+||.+|+++++++|++|+|+|+|||. ++++|+.+.++|+||+|+.+|++++.. .+ ..+| +
T Consensus 485 ~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~--~k~~Aa~--A 559 (810)
T 3now_A 485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEK--GKRHATQ--A 559 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHH--HHHHHHH--H
T ss_pred HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHH--HHHHHHH--H
Confidence 2 789999999999999999999999999999999996 577999999999999999999887521 01 1111 2
Q ss_pred HHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHH
Q 041643 315 IHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRR 394 (576)
Q Consensus 315 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr 394 (576)
+.++...... ...+. + ....++++++......++.. ..+..|++||.||+.++++ .++
T Consensus 560 L~nL~~~~~p-~~~~~-~-------~~~~~aIppLv~LL~~~~~~---l~~~eAl~AL~NLa~~~d~----------~~~ 617 (810)
T 3now_A 560 LARIGITINP-EVSFS-G-------QRSLDVIRPLLNLLQQDCTA---LENFESLMALTNLASMNES----------VRQ 617 (810)
T ss_dssp HHHHHHHSCH-HHHTT-T-------HHHHHTHHHHHHTTSTTSCH---HHHHHHHHHHHHHTTSCHH----------HHH
T ss_pred HHHHhcCCCh-hhhhc-c-------hhhhcHHHHHHHHhCCCCcH---HHHHHHHHHHHHHhcCCHH----------HHH
Confidence 2222111110 00000 0 00001344432222222111 1346799999999987543 233
Q ss_pred hhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643 395 SAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALS 469 (576)
Q Consensus 395 ~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~ 469 (576)
.... .++++.|+.++.+++ +.+|.+|+++|+||+...... ..+.+++|+.+|++.+.+++++|+|||+
T Consensus 618 ~Ii~------aG~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 618 RIIK------EQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp HHHH------TTHHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHH------cCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2211 256899999998754 899999999999999743321 2478999999999999999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHH-CCCcHhHHHhhccChh-HHHHHHHHHHHHhccc-CchHHHHhccchhhHhhhhcccCCCC
Q 041643 470 KFVSPDNFNRSEHSKAIIE-FDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA-GNSKALEQARALNALEGAARTVLPQH 546 (576)
Q Consensus 470 nla~~~n~~~~~~~~~Iv~-~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~-~~~~~l~~~~~l~~Le~~~~~~~~q~ 546 (576)
|++++ ++++++.|++ .|++++|++||.+++. +|..|++++++++.+. .....+.++|++++|..+.+.. +
T Consensus 691 nLt~~----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~---d 763 (810)
T 3now_A 691 IITSV----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP---D 763 (810)
T ss_dssp HHHHH----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT---T
T ss_pred HHhCC----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc---c
Confidence 99863 2578999999 9999999999999887 9999999999997543 3457899999999998553221 2
Q ss_pred CcHHHHHHHHHHHHH
Q 041643 547 PELRDLFAQAIYHLT 561 (576)
Q Consensus 547 ~~~~~l~~~a~~~l~ 561 (576)
+...++++.|...|+
T Consensus 764 ~~~~~i~e~Al~aL~ 778 (810)
T 3now_A 764 DTRAKAREVATQCLA 778 (810)
T ss_dssp STTHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHH
Confidence 345566665555554
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.2e-32 Score=304.64 Aligned_cols=378 Identities=17% Similarity=0.186 Sum_probs=267.5
Q ss_pred cccHHHHHHHHHhhhcc-----hHHHhhhcccC-c------cccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 041643 118 NADFKKVFSLLESSIGD-----MRWLLTIFDSD-E------VNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANE 185 (576)
Q Consensus 118 ~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~-~------~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~ 185 (576)
..+++.|+.+|.+..-+ ..+|.+++..+ . ..+++|++ |.+|++++.+.|++|+.+
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~L-------------V~LL~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL-------------VGLLDHPKKEVHLGACGA 113 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH-------------HHGGGCSSHHHHHHHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHH-------------HHHHCCCCHHHHHHHHHH
Confidence 58999999999754322 23444554322 1 12234444 899999999999999999
Q ss_pred HHHHhhc-CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhc--------
Q 041643 186 LASLARD-NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLG-------- 256 (576)
Q Consensus 186 L~~La~~-~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~-------- 256 (576)
|.+|+.. +++|+..|++.||||+||+||+++.+...|++|++||+||+.+++++..|++ |+||+||++|.
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWER 192 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccc
Confidence 9999984 5899999999999999999999854388999999999999999999999995 67999999872
Q ss_pred ----------CCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccCCCc-chh-h-hhHHHHHHhhh
Q 041643 257 ----------EAPVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALDLPK-PES-A-KTTIHSLVQMK 322 (576)
Q Consensus 257 ----------s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~~~~-~i~-~-~~si~~~v~~~ 322 (576)
+.+++++++|+++|.||+.+++++|..+++. |+|++||.+|++........ ... . --.++++....
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~ 272 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence 1247999999999999999888889999886 66789999998531000111 111 0 01222221110
Q ss_pred c-cccc---ccccc--CCCCCCCCCCCCCCCCcc----------cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhc
Q 041643 323 K-EMTE---KSTNV--TNNSDGSSRGGHGQHYNK----------KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSA 386 (576)
Q Consensus 323 ~-~~~~---~~~~~--~~~~~~~~~~~~g~~~~~----------~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iava 386 (576)
. .... ..... .+..+ .....+|++.+. ..++..+++ +++.|++|||+||.|+...
T Consensus 273 ~~e~~~~~~~~~~~~~~~~~~-~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~----v~E~Aa~AL~nL~ag~~~~---- 343 (584)
T 3l6x_A 273 HREIPQAERYQEAAPNVANNT-GTSPARGYELLFQPEVVRIYISLLKESKTPA----ILEASAGAIQNLCAGRWTY---- 343 (584)
T ss_dssp HHHSTTCCC---------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHSSCSHH----
T ss_pred cccccchhhhhhhcccccccc-cccCchhHHHHhcccHHHHHHHHHccCCCHH----HHHHHHHHHHHHHcCCccc----
Confidence 0 0000 00000 00000 011223444210 112233444 5689999999999875321
Q ss_pred ccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh---hhCcHHHHHHhhcCC-------
Q 041643 387 ESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK---EKRMIGPLVALLSNR------- 456 (576)
Q Consensus 387 e~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~---~~~~I~~LV~LL~~~------- 456 (576)
...+|. .+. -.++++.|+++|.+++ +.++..|+++|+||+...... ..++||+||.+|.++
T Consensus 344 --~~~~~~-~v~-----~~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~ 414 (584)
T 3l6x_A 344 --GRYIRS-ALR-----QEKALSAIADLLTNEH-ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWN 414 (584)
T ss_dssp --HHHHHH-HHT-----SHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGT
T ss_pred --cHHHHH-HHH-----HcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccccccc
Confidence 001221 111 1357899999998765 899999999999999865542 457899999999876
Q ss_pred -CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccC--hh-HHHHHHHHHHHHhcccCchHHHHhccc
Q 041643 457 -NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS--DR-AQVHGLVFLCYLALSAGNSKALEQARA 531 (576)
Q Consensus 457 -~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~--d~-vq~~A~~~L~~lal~~~~~~~l~~~~~ 531 (576)
..++...|+++|+|++..+ +++++.|++.|||++|++||+++ .+ +++.|.++||++..+.+....+.+.|+
T Consensus 415 ~s~~v~~~a~~tL~NL~a~~----~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 415 FSEDTVISILNTINEVIAEN----LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp CCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 4789999999999998643 69999999999999999999986 44 888999999999887777777776554
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.7e-32 Score=286.95 Aligned_cols=268 Identities=16% Similarity=0.187 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC----------CChHHHHHHHHHHHHhhcCCc-hHHHHHHc
Q 041643 177 KSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA----------ASPDAQTAAANALFNIATDQE-TVRFIVDV 245 (576)
Q Consensus 177 e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g----------~~~~~q~~AA~AL~nLa~~~~-~~~~iv~~ 245 (576)
..+..|+++|.+++.+ +++|+.|++.||+|+|++||..+ .++..|++|+|+|.||+.+.+ ++..|...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456799999999986 89999999999999999999531 126799999999999998765 66667554
Q ss_pred -CCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643 246 -LGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323 (576)
Q Consensus 246 -Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~ 323 (576)
|+||.||++|+++++++|+.|+|+|.||+.. ++.+|+.+.+.|+||+||++|...
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~----------------------- 182 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----------------------- 182 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-----------------------
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-----------------------
Confidence 5599999999999999999999999999975 678999999999999999986321
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643 324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA 403 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a 403 (576)
.|++ +++.|++|||+|+.++.++ |.... .
T Consensus 183 --------------------------------~~~~----~~~~A~~aL~nLs~~~~~n----------k~~i~-----~ 211 (354)
T 3nmw_A 183 --------------------------------KKES----TLKSVLSALWNLSAHCTEN----------KADIC-----A 211 (354)
T ss_dssp --------------------------------CCHH----HHHHHHHHHHHHHTTCHHH----------HHHHH-----H
T ss_pred --------------------------------CCHH----HHHHHHHHHHHHHccChhh----------hHHHH-----H
Confidence 0222 4578999999999854322 22111 0
Q ss_pred HHHHHHHHHHHhhhcCCh---hhHHHHHHHHHHHhc---CCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 404 AKAVLDQLLRLIHEESDA---MLQTPAIRSIGCLAK---TFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~---~lq~~a~~aLgnLa~---~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
..++++.|+++|.++++. .++..|+.+|.||+. ..++ .+.|+||+||.+|++++.+++++|+|+|+|++
T Consensus 212 ~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 136799999999876532 489999999999985 2322 24588999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643 473 SPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS 523 (576)
Q Consensus 473 ~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~ 523 (576)
.+ ++++++.|++.|+|++|++||++++. ++..|+++|.+|+.+.++.
T Consensus 292 ~~----~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 292 AR----NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp SS----CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred CC----CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 53 26899999999999999999999887 8999999999998765553
No 7
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.6e-32 Score=304.00 Aligned_cols=310 Identities=18% Similarity=0.189 Sum_probs=242.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC--CchHHHHH
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD--QETVRFIV 243 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~--~~~~~~iv 243 (576)
.+|.+|++++.+.|.+||.+|.+|+..+++++..|++.|+||+||+||++++ +.+|++|+|||+||+.+ ++++..|+
T Consensus 52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3489999999999999999999999877899999999999999999999999 99999999999999984 79999999
Q ss_pred HcCCHHHHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643 244 DVLGVPIIVSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322 (576)
Q Consensus 244 ~~Gavp~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~ 322 (576)
++|+||+||++|++ ++.+++++++++|.+|+. +++++..|.+ |+||+||++|.... +
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~----s---------------- 188 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPH----S---------------- 188 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHH----H----------------
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccc----c----------------
Confidence 99999999999987 578999999999999997 5688888886 57999999984210 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643 323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402 (576)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~ 402 (576)
.+ ... ..... |.++.+|+++ +..|+++|.+||..+.+ .|+....
T Consensus 189 g~---------------~~~-~~~~~--k~~~~~d~~V----~~nAa~~L~NLs~~~~~----------~R~~i~~---- 232 (584)
T 3l6x_A 189 GW---------------ERE-PNEDC--KPRHIEWESV----LTNTAGCLRNVSSERSE----------ARRKLRE---- 232 (584)
T ss_dssp CC---------------C-------------CCCCHHH----HHHHHHHHHHHTSSCHH----------HHHHHHH----
T ss_pred cc---------------ccc-ccccc--cccccccHHH----HHHHHHHHHHHhcCCHH----------HHHHHHH----
Confidence 00 000 00001 3344556665 58999999999976532 2332211
Q ss_pred hHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHhcCCch------------------------------hhhCcHH
Q 041643 403 AAKAVLDQLLRLIHEE-----SDAMLQTPAIRSIGCLAKTFPA------------------------------KEKRMIG 447 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~-----~~~~lq~~a~~aLgnLa~~~~~------------------------------~~~~~I~ 447 (576)
+.++++.|+.+|++. .+...+++|+++|.||+..... .+.++|+
T Consensus 233 -~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~ 311 (584)
T 3l6x_A 233 -CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVR 311 (584)
T ss_dssp -STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHH
T ss_pred -cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHH
Confidence 236789999999753 3467899999999999853100 0124578
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHH
Q 041643 448 PLVALLS-NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKA 525 (576)
Q Consensus 448 ~LV~LL~-~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~ 525 (576)
+|+.+|+ +.++++++.|+|||.|++.+........++.|.++||+|.|++||++++. ++..|+++|.||+.+..+...
T Consensus 312 ~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 391 (584)
T 3l6x_A 312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL 391 (584)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHH
Confidence 9999995 56899999999999999764321112334466678999999999999877 999999999999998888777
Q ss_pred HHhccchhhHh
Q 041643 526 LEQARALNALE 536 (576)
Q Consensus 526 l~~~~~l~~Le 536 (576)
| ..|+++.|.
T Consensus 392 I-~~g~ip~LV 401 (584)
T 3l6x_A 392 I-GKHAIPNLV 401 (584)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HhCCHHHHH
Confidence 6 678999987
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.2e-31 Score=293.95 Aligned_cols=374 Identities=20% Similarity=0.201 Sum_probs=277.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRF 241 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~ 241 (576)
+-.++..|++++.+.+..|+..|.+++..++ ++...+++.|+||+|+++|++++++..|+.|+|+|++|+.+ ++++..
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4445889999999999999999999976544 67889999999999999999875589999999999999996 688899
Q ss_pred HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh--hhhHHHHHH
Q 041643 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES--AKTTIHSLV 319 (576)
Q Consensus 242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~--~~~si~~~v 319 (576)
+++.|++|.|+.+|++++.++++.|+|+|++|+.+++.+|+.+.+.|+|++|+.+|.... +. .+. ...++.++.
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~---~~-~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT---KL-SMLRNATWTLSNFC 231 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC---CH-HHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC---CH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988999999999999999999995321 11 010 001222211
Q ss_pred hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc--------------hh
Q 041643 320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL--------------WS 385 (576)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I--------------av 385 (576)
... + .+......++++.+.......|+++ +..|+++|++|+.++...+ .+
T Consensus 232 ~~~-----------~-~~~~~~~~~~l~~L~~lL~~~~~~v----~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 232 RGK-----------P-QPSFEQTRPALPALARLIHSNDEEV----LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp CSS-----------S-CCCHHHHTTHHHHHHHHTTCCCHHH----HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred cCC-----------C-CCcHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence 110 0 0000000123333323334456654 4789999999997765431 11
Q ss_pred cccchHHHHhhhccCchh------------HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHH
Q 041643 386 AESNAELRRSAFKTNSPA------------AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGP 448 (576)
Q Consensus 386 ae~~~~lrr~a~k~~s~a------------~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~ 448 (576)
...++.+|..++...+.. -.++++.|+.+|.+..++.++..|+++|+||+..... .+.+++|+
T Consensus 296 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~ 375 (528)
T 4b8j_A 296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 375 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHH
T ss_pred cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Confidence 122333444333211000 1256788999998763489999999999999974432 13488999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc-----
Q 041643 449 LVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN----- 522 (576)
Q Consensus 449 LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~----- 522 (576)
|+++|.+++++++++|+|+|+|++..++ +++.+.+++.|++++|+++|..++. ++..++.+|+++....++
T Consensus 376 L~~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~ 452 (528)
T 4b8j_A 376 LVNLLQTAEFDIKKEAAWAISNATSGGS---HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLA 452 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999997543 6889999999999999999998877 888899999999643332
Q ss_pred -------hHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643 523 -------SKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG 566 (576)
Q Consensus 523 -------~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~ 566 (576)
...+.+.|++..|+ .+|+|.+++++++|..+|+.||+.
T Consensus 453 ~~~~~~~~~~i~~~~~~~~l~------~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 453 AGDVNVFSQMIDEAEGLEKIE------NLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp TCSCCHHHHHHHHTTHHHHHH------HGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred cccccHHHHHHHHCCcHHHHH------HHHcCCCHHHHHHHHHHHHHHCCC
Confidence 23444555555554 447889999999999999999984
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=297.08 Aligned_cols=262 Identities=16% Similarity=0.186 Sum_probs=215.3
Q ss_pred HHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHcc-----------CCChHHHHHHHHHHHHhhcCCc-hHHHHHH-cCC
Q 041643 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKE-----------AASPDAQTAAANALFNIATDQE-TVRFIVD-VLG 247 (576)
Q Consensus 181 ~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~-----------g~~~~~q~~AA~AL~nLa~~~~-~~~~iv~-~Ga 247 (576)
+|+++|.+++.+ ++||+.|++.|+|++|++||.. .+ +..|++|+|+|.||+.+.+ ++..+.. .|+
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~-~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS-ITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCC-HHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 999999999875 8999999999999999999952 23 6789999999999999765 5555655 556
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643 248 VPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT 326 (576)
Q Consensus 248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~ 326 (576)
||+||++|+++++++++.|+|+|.||+.. ++.+|+.|.+.|+||+||++|...
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s-------------------------- 298 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-------------------------- 298 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC--------------------------
Confidence 99999999999999999999999999985 678999999999999999986321
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHH
Q 041643 327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKA 406 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~ 406 (576)
.+++ +++.|+.|||+|+.++.+ .|.... ...+
T Consensus 299 -----------------------------~~~~----v~~~A~~aL~nLs~~~~~----------nk~~I~-----~~~G 330 (458)
T 3nmz_A 299 -----------------------------KKES----TLKSVLSALWNLSAHCTE----------NKADIC-----AVDG 330 (458)
T ss_dssp -----------------------------CSHH----HHHHHHHHHHHHHHHCHH----------HHHHHH-----HSTT
T ss_pred -----------------------------CCHH----HHHHHHHHHHHHccCCHH----------HHHHHH-----HhcC
Confidence 0222 457899999999974322 222111 0136
Q ss_pred HHHHHHHHhhhcCCh---hhHHHHHHHHHHHhc---CCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC
Q 041643 407 VLDQLLRLIHEESDA---MLQTPAIRSIGCLAK---TFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPD 475 (576)
Q Consensus 407 vV~~Ll~lL~~~~~~---~lq~~a~~aLgnLa~---~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~ 475 (576)
+++.|+++|.+.++. .++..|+++|.||+. ..++ .+.|+||+||.+|++++.+++++|+|+|+|++...
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 789999999876532 489999999999985 2322 24588999999999999999999999999998642
Q ss_pred CCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643 476 NFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 476 n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~ 522 (576)
+++++.|++.|+|++|++||++++. ++..|+++|.+|+.+.+.
T Consensus 411 ----~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 411 ----PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp ----HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred ----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 6899999999999999999998887 899999999999876543
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=291.89 Aligned_cols=313 Identities=15% Similarity=0.141 Sum_probs=245.2
Q ss_pred HHHHhc------------CCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCH----------HHHHHHHccCC-ChH----
Q 041643 168 ISTIQM------------GQIKSRVDAANELASLARDNNRNRKIIVEEGGI----------LPLLKLLKEAA-SPD---- 220 (576)
Q Consensus 168 i~~L~~------------G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgI----------ppLV~LL~~g~-~~~---- 220 (576)
|+.|+. |+.+.+.+|+++|.|++..+++..+...+.|.+ +.++++|.+.. .++
T Consensus 76 v~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (458)
T 3nmz_A 76 IQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKN 155 (458)
T ss_dssp HHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSC
T ss_pred HHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccC
Confidence 677775 568999999999999999888888888888888 77788887642 122
Q ss_pred -H-------HHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC-----------CChhHHHHHHHHHHHHhcCChHHH
Q 041643 221 -A-------QTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE-----------APVKVQVAVANLVARMAELDSIAQ 281 (576)
Q Consensus 221 -~-------q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s-----------~~~~vq~~Aa~aL~~LA~~~~~~r 281 (576)
+ +.+|+|+|+||+.++++|..|++.|++++|+.+|.. .+..+|..|+|+|.||+.+++..+
T Consensus 156 ~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k 235 (458)
T 3nmz_A 156 PMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 235 (458)
T ss_dssp C--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccH
Confidence 2 239999999999999999999999999999999952 236789999999999999888788
Q ss_pred HHHHhc-CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHH
Q 041643 282 EEFVRE-NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEV 360 (576)
Q Consensus 282 ~~i~~~-g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~v 360 (576)
..+... |+||+||.+|+++ |++
T Consensus 236 ~~i~~~~GaIp~LV~LL~s~--------------------------------------------------------~~~- 258 (458)
T 3nmz_A 236 ATLCSMKGCMRALVAQLKSE--------------------------------------------------------SED- 258 (458)
T ss_dssp HHHHHCHHHHHHHHHGGGCS--------------------------------------------------------CHH-
T ss_pred HHHHHcCCcHHHHHHHHhCC--------------------------------------------------------CHH-
Confidence 888654 6699999999643 222
Q ss_pred HHHHHHHHHHHHHHhhcC-CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643 361 KAKVRIACAEALWKLSKG-CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP 439 (576)
Q Consensus 361 k~~~k~~Aa~ALw~La~g-~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~ 439 (576)
+++.|+|||++|+.+ +..+ |.... ..++|+.|+++|.+..++.++.+++++|+||+...+
T Consensus 259 ---v~~~A~~aL~nLs~~~~~~~----------k~~I~------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 259 ---LQQVIASVLRNLSWRADVNS----------KKTLR------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp ---HHHHHHHHHHHHTSSCCHHH----------HHHHH------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred ---HHHHHHHHHHHHhcCCCHHH----------HHHHH------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence 468999999999986 3222 22111 125789999976554458899999999999997332
Q ss_pred h-h-----hhCcHHHHHHhhcCCCH----HHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HH
Q 041643 440 A-K-----EKRMIGPLVALLSNRNV----DVATEAVIALSKFVS--PDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQ 506 (576)
Q Consensus 440 ~-~-----~~~~I~~LV~LL~~~~~----~V~~eAa~AL~nla~--~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq 506 (576)
+ + ..|+||+|+++|++.+. +++++|+|+|.|++. .+ ++++++.|++.|++++|++||++++. +|
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~ 396 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIV 396 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHSSCSCHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHcccHHHHHHHHcCCChHHH
Confidence 2 1 45899999999987654 599999999999984 12 26889999999999999999998877 99
Q ss_pred HHHHHHHHHHhc-ccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHh
Q 041643 507 VHGLVFLCYLAL-SAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTL 562 (576)
Q Consensus 507 ~~A~~~L~~lal-~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 562 (576)
..|+++|++++. +..+...+.++|++++|..+.+.. +...++-...|+..|-.
T Consensus 397 ~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~---~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 397 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHc
Confidence 999999999984 566678899999999998553222 34555555566666643
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=4e-31 Score=287.29 Aligned_cols=371 Identities=14% Similarity=0.149 Sum_probs=252.7
Q ss_pred cHHHHHHHHHhhhcc-----hHHHhhhcccCcc-ccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 041643 120 DFKKVFSLLESSIGD-----MRWLLTIFDSDEV-NLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDN 193 (576)
Q Consensus 120 ~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~-~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~ 193 (576)
+++.++..|.+...+ ...+-+++.++.. .. .+...+.+.. ++.+|++++.+.+..|+++|.+|+..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~---~i~~~g~i~~----Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ---QVYQLGGICK----LVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH---HHHHTTHHHH----HHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH---HHHHcCCHHH----HHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 578889999764332 2333444432211 00 0112222322 378999999999999999999999987
Q ss_pred cccHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh--------cCC------
Q 041643 194 NRNRKIIVEEGGILPLLKLLK-EAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL--------GEA------ 258 (576)
Q Consensus 194 ~~~~~~I~~~GgIppLV~LL~-~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL--------~s~------ 258 (576)
++++..|++.|+||+||++|+ +++ ++.|++|+|+|+||+.+++++..|++ |++|+|+++| +++
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 999999999999999999999 777 99999999999999999889999999 9999999999 333
Q ss_pred --ChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCchhHHHhhccccccC--CCcchhhhh-HHHHHHhhh-ccc-c----
Q 041643 259 --PVKVQVAVANLVARMAELDSIAQEEFVRE-NVTRSLISLLCMDIALD--LPKPESAKT-TIHSLVQMK-KEM-T---- 326 (576)
Q Consensus 259 --~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~-g~I~~LV~LL~~~t~~~--~~~~i~~~~-si~~~v~~~-~~~-~---- 326 (576)
+.+++..|+|+|.||+.+ +++|+.+.+. |+|++|+.+|.+++... +.+..-... .++++.... ... .
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~ 232 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhh
Confidence 345666999999999987 8999999997 99999999998642100 111000000 122211000 000 0
Q ss_pred -------------ccccccCC---------CCCCC--CCCCCCCCCc---------c-cccccCCHHHHHHHHHHHHHHH
Q 041643 327 -------------EKSTNVTN---------NSDGS--SRGGHGQHYN---------K-KDRELETPEVKAKVRIACAEAL 372 (576)
Q Consensus 327 -------------~~~~~~~~---------~~~~~--~~~~~g~~~~---------~-~~~e~~d~~vk~~~k~~Aa~AL 372 (576)
...+.+.. ..+.. ....+|+..+ . .....++++ +++.|+|||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~----~~e~a~~aL 308 (457)
T 1xm9_A 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA----TLEACAGAL 308 (457)
T ss_dssp HHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH----HHHHHHHHH
T ss_pred cccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH----HHHHHHHHH
Confidence 00000000 00000 0000111110 0 011223444 468999999
Q ss_pred HHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh---hhCcHHHH
Q 041643 373 WKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK---EKRMIGPL 449 (576)
Q Consensus 373 w~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~---~~~~I~~L 449 (576)
++|+.|+... .....|..+.. .++++.|+++|.+++ ++++..|+++|.||++..... ..++||+|
T Consensus 309 ~nl~~~~~~~------~~~~~~~~v~~-----~~~l~~Lv~LL~~~~-~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~L 376 (457)
T 1xm9_A 309 QNLTASKGLM------SSGMSQLIGLK-----EKGLPQIARLLQSGN-SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEV 376 (457)
T ss_dssp HHHTTCSSSH------HHHHHHHHHTT-----SCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHH
T ss_pred HHhccCcCcc------hHHHHHHHHHH-----cCCchHHHHHHhCCC-HhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHH
Confidence 9999886431 01221222210 146899999999876 899999999999999865442 45789999
Q ss_pred HHhhcCCC------HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccC-hh-HHHHHHHHHHHHhccc
Q 041643 450 VALLSNRN------VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKIS-DR-AQVHGLVFLCYLALSA 520 (576)
Q Consensus 450 V~LL~~~~------~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~-d~-vq~~A~~~L~~lal~~ 520 (576)
|++|.+++ .++...++++|+|+...+ +++.+.|.+.||+++|++|++++ +. +++.|.++|.++..+.
T Consensus 377 v~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~----~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 99998764 468889999999997643 48899999999999999999988 66 8999999998886443
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=3.2e-30 Score=283.30 Aligned_cols=376 Identities=18% Similarity=0.182 Sum_probs=277.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-CcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHH
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARD-NNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVR 240 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~-~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~ 240 (576)
.+..++..|++++.+.+..|+..|..+... +++++..+++.|+||+|+++|++++++..|+.|+|+|++|+.+ ++.+.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355668999999999999999999999754 2456788899999999999999973399999999999999995 56788
Q ss_pred HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh--hhhHHHHH
Q 041643 241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES--AKTTIHSL 318 (576)
Q Consensus 241 ~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~--~~~si~~~ 318 (576)
.+++.|++|.|+++|++++.++++.|+|+|++|+.+++.+++.+...|++++|+.+|.... .. +. ...++.++
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~-v~~~a~~~L~~L 242 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK----PS-LIRTATWTLSNL 242 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC----HH-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC----HH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999988999999999999999999997531 10 00 01122222
Q ss_pred HhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc--------------h
Q 041643 319 VQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL--------------W 384 (576)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I--------------a 384 (576)
...... ........++++.+.......|+++ +..|+++|.+|+.++.+.+ .
T Consensus 243 ~~~~~~-----------~~~~~~~~~~l~~L~~lL~~~d~~v----~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l 307 (530)
T 1wa5_B 243 CRGKKP-----------QPDWSVVSQALPTLAKLIYSMDTET----LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307 (530)
T ss_dssp HCCSSS-----------CCCHHHHGGGHHHHHHHTTCCCHHH----HHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred hCCCCC-----------CCcHHHHHhHHHHHHHHHcCCCHHH----HHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH
Confidence 111100 0000000112333223334456654 5789999999998755431 1
Q ss_pred hcccchHHHHhhhccCchh------------HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHH
Q 041643 385 SAESNAELRRSAFKTNSPA------------AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIG 447 (576)
Q Consensus 385 vae~~~~lrr~a~k~~s~a------------~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~ 447 (576)
+.+.+..+|..++...... ..++++.|+.+|.+++ +.++..|+++|+||+...+. .+.+++|
T Consensus 308 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~ 386 (530)
T 1wa5_B 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIP 386 (530)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred HCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 1222334444443211111 1257888999998765 88999999999999975432 1358999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch---
Q 041643 448 PLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS--- 523 (576)
Q Consensus 448 ~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~--- 523 (576)
+|+++|++++++++++|+|+|++++..++. .+++.+.+++.|++++|+++|...+. ++..++.+|.++....++.
T Consensus 387 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~ 465 (530)
T 1wa5_B 387 PLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA 465 (530)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999865421 12788999999999999999998877 8888999999887544332
Q ss_pred ---------HHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643 524 ---------KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG 566 (576)
Q Consensus 524 ---------~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~ 566 (576)
..+.+.|+++.|+ .+|+|.+.+++.+|..+|+.||..
T Consensus 466 ~~~~~~~~~~~l~~~g~~~~L~------~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 466 RGLNINENADFIEKAGGMEKIF------NCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HTCSSCHHHHHHHHTTHHHHHH------GGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred ccccccHHHHHHHHcCcHHHHH------HHHcCCCHHHHHHHHHHHHHHCCc
Confidence 2344555555554 447788899999999999999983
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=4.5e-30 Score=283.35 Aligned_cols=339 Identities=18% Similarity=0.207 Sum_probs=263.7
Q ss_pred hccccccHHHHHHHHHhhh-cc----hHHHh-hhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041643 114 SITTNADFKKVFSLLESSI-GD----MRWLL-TIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELA 187 (576)
Q Consensus 114 ~i~~~~~l~~l~~~L~~~~-~~----~~~ll-~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~ 187 (576)
.|+..|.+|+|+.+|..+. .+ ..|.| +++.++.... -.+...+.+.. ++.+|++++.+.|+.|+++|+
T Consensus 114 ~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~--~~vv~~Gaip~----Lv~LL~s~~~~v~e~A~~aL~ 187 (529)
T 3tpo_A 114 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT--KAVVDGGAIPA----FISLLASPHAHISEQAVWALG 187 (529)
T ss_dssp HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHH----HHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHCCCHHH----HHHHHcCCCHHHHHHHHHHHH
Confidence 4568999999999996432 11 34544 4444321000 00122222222 278999999999999999999
Q ss_pred HHhhcCcccHHHHHhcCCHHHHHHHHccCCC----hHHHHHHHHHHHHhhcCCchH-HHHHHcCCHHHHHHhhcCCChhH
Q 041643 188 SLARDNNRNRKIIVEEGGILPLLKLLKEAAS----PDAQTAAANALFNIATDQETV-RFIVDVLGVPIIVSVLGEAPVKV 262 (576)
Q Consensus 188 ~La~~~~~~~~~I~~~GgIppLV~LL~~g~~----~~~q~~AA~AL~nLa~~~~~~-~~iv~~Gavp~LV~lL~s~~~~v 262 (576)
+|+.+++.++..|++.|++++|+.+|..++. ...+.+++|+|.|++.+.+.. ......|++|.|+++|.++++++
T Consensus 188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 9999888999999999999999999986541 346889999999999976543 34445789999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCC
Q 041643 263 QVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRG 342 (576)
Q Consensus 263 q~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~ 342 (576)
+..++|+|++++.++++....+...|++|.||.+|.++
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~------------------------------------------ 305 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT------------------------------------------ 305 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS------------------------------------------
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC------------------------------------------
Confidence 99999999999998888888999999999999999542
Q ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChh
Q 041643 343 GHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAM 422 (576)
Q Consensus 343 ~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~ 422 (576)
++. ++..|+++|++|+.+++.+ +...+ -.++++.|+.+|.+.+ +.
T Consensus 306 --------------~~~----v~~~a~~aL~nl~~~~~~~----------~~~i~------~~g~l~~L~~LL~~~~-~~ 350 (529)
T 3tpo_A 306 --------------ELP----IVTPALRAIGNIVTGTDEQ----------TQKVI------DAGALAVFPSLLTNPK-TN 350 (529)
T ss_dssp --------------CHH----HHHHHHHHHHHHTTSCHHH----------HHHHH------HTTGGGGHHHHTTCSS-HH
T ss_pred --------------Chh----HHHHHHHHHHHHHccchHH----------HHHHh------hcccHHHHHHHHcCCC-HH
Confidence 222 4578999999999876533 11111 1246788899998765 88
Q ss_pred hHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643 423 LQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR 497 (576)
Q Consensus 423 lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~ 497 (576)
++..|+++|+||+...+. .+.|+||+|+.+|++++.+++++|+|||+|++++++ .++++++++.|+|++|++
T Consensus 351 i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~---~~~~~~l~~~g~i~~L~~ 427 (529)
T 3tpo_A 351 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMN 427 (529)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCcCHHHHHH
Confidence 999999999999975543 246899999999999999999999999999997653 689999999999999999
Q ss_pred hhccChh-HHHHHHHHHHHHhc---ccCch----HHHHhccchhhHhhh
Q 041643 498 LLKISDR-AQVHGLVFLCYLAL---SAGNS----KALEQARALNALEGA 538 (576)
Q Consensus 498 LL~~~d~-vq~~A~~~L~~lal---~~~~~----~~l~~~~~l~~Le~~ 538 (576)
||++.|. ++..++.+|.+|.. ..++. ..+.+.|++..|+.+
T Consensus 428 LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 476 (529)
T 3tpo_A 428 LLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 476 (529)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH
Confidence 9999887 77777777777742 22333 346789999998744
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=4.2e-30 Score=282.72 Aligned_cols=362 Identities=17% Similarity=0.195 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHHchhcCccchhhhccccccHHHHHHHHHhhh-cc----hHHHh-hhcccCccccCCCCCCCcchHhHHH
Q 041643 91 KNLDRSLTLVRRCKHAGVLRHVFSITTNADFKKVFSLLESSI-GD----MRWLL-TIFDSDEVNLSLPPIASNDPILAWV 164 (576)
Q Consensus 91 ~t~~~a~~~~~~C~~~g~~~r~~~i~~~~~l~~l~~~L~~~~-~~----~~~ll-~~s~~~~~~~~lp~ia~~~~i~~~v 164 (576)
+..-+|..-+|++-....---.-.|+..|.+|+|+.+|..+. .+ ..|.| |+...+.... -.+...+.+..
T Consensus 72 ~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~--~~vv~~GaIp~-- 147 (510)
T 3ul1_B 72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT--KAVVDGGAIPA-- 147 (510)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHH--
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCCHHH--
Confidence 334455666777632111111124678999999999996432 22 34544 4443221000 00111222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC----hHHHHHHHHHHHHhhcCCchHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS----PDAQTAAANALFNIATDQETVR 240 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~----~~~q~~AA~AL~nLa~~~~~~~ 240 (576)
++.+|++++.+.|+.|+++|++|+.+++.++..+.+.|++++|+.+|.+.+. ...+.+++|+|.|++.+.....
T Consensus 148 --Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 225 (510)
T 3ul1_B 148 --FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225 (510)
T ss_dssp --HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred --HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence 2899999999999999999999999888899999999999999999986541 3467899999999999765443
Q ss_pred -HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643 241 -FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV 319 (576)
Q Consensus 241 -~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v 319 (576)
.....|++|.|+++|.+++++++..|+|+|.+|+.+.++....+.+.|+++.|+.+|.++
T Consensus 226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~------------------- 286 (510)
T 3ul1_B 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT------------------- 286 (510)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-------------------
T ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-------------------
Confidence 344578999999999999999999999999999988888888999999999999999642
Q ss_pred hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643 320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT 399 (576)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~ 399 (576)
++. ++..++++|++|+.++..+ ++..+
T Consensus 287 -------------------------------------~~~----v~~~al~aL~nl~~~~~~~----------~~~i~-- 313 (510)
T 3ul1_B 287 -------------------------------------ELP----IVTPALRAIGNIVTGTDEQ----------TQKVI-- 313 (510)
T ss_dssp -------------------------------------CHH----HHHHHHHHHHHHTTSCHHH----------HHHHH--
T ss_pred -------------------------------------Chh----hhhHHHHHHHHhhcCCHHH----------HHHHh--
Confidence 122 4578999999999876433 11111
Q ss_pred CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643 400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP 474 (576)
Q Consensus 400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~ 474 (576)
-.++++.|+.+|++.+ +.++..|+++|+||+..... .+.+++|+|+.+|++++++++++|+|||+|++++
T Consensus 314 ----~~g~l~~L~~LL~~~~-~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 314 ----DAGALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp ----HTTGGGGCC-CTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ----hccchHHHHHHhcCCC-HHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 1245677888888765 88999999999999875543 2458999999999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc---ccCch----HHHHhccchhhHhhh
Q 041643 475 DNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL---SAGNS----KALEQARALNALEGA 538 (576)
Q Consensus 475 ~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal---~~~~~----~~l~~~~~l~~Le~~ 538 (576)
++ .+++.++++.|++++|++||++.|. ++..++.+|.+|.. +.++. ..+.+.|++..||.+
T Consensus 389 ~~---~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 457 (510)
T 3ul1_B 389 GT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457 (510)
T ss_dssp CC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG
T ss_pred CC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH
Confidence 53 6899999999999999999999887 77778887777742 33333 346789999999744
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=5.2e-29 Score=264.98 Aligned_cols=374 Identities=18% Similarity=0.187 Sum_probs=271.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhh-cCcccHHHHHhc-CCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLAR-DNNRNRKIIVEE-GGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRF 241 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~-~~~~~~~~I~~~-GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~ 241 (576)
..++..|++++.+.|..|+..|..+.. ..++..+.+++. |++|.|+++|++++++..|..|+++|.+++.+ +++++.
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 345889999999999999999999764 223344566777 99999999999983399999999999999984 577888
Q ss_pred HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHh
Q 041643 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQ 320 (576)
Q Consensus 242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~ 320 (576)
+++.|++|.|+++|++++.++++.|+++|++++.++++.|+.+.+.|++++|+.+|.++. +.. ......++.++..
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---RLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---CHHHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999988899999999999999999997421 110 0000112222211
Q ss_pred hhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCccc---------c-----hhc
Q 041643 321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLS---------L-----WSA 386 (576)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~---------I-----ava 386 (576)
... + ........++++.+.......|+++ +..++++|.+|+.+..++ + .+.
T Consensus 180 ~~~----------~-~~~~~~~~~~l~~L~~~l~~~~~~v----~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 180 GKS----------P-PPEFAKVSPCLNVLSWLLFVSDTDV----LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp CSS----------S-CCCGGGTGGGHHHHHHHTTCCCHHH----HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred CCC----------C-CCCHHHHHHHHHHHHHHHccCCHHH----HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 100 0 0000001123443323333456654 578999999998765332 1 112
Q ss_pred ccchHHHHhhhcc------Cch------hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHH
Q 041643 387 ESNAELRRSAFKT------NSP------AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPL 449 (576)
Q Consensus 387 e~~~~lrr~a~k~------~s~------a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~L 449 (576)
+.+...|..++.. ..+ ...++++.|+.++.+++ +.++..|+++|+||+..... .+.+++|+|
T Consensus 245 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 245 HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 2233444433221 111 01257889999998754 88999999999999964432 135889999
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch-----
Q 041643 450 VALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS----- 523 (576)
Q Consensus 450 V~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~----- 523 (576)
+++|++++++++++|+|+|+|++..+ ++++.+.+++.|++++|+++|+.++. ++..|+++|.+++...++.
T Consensus 324 ~~~l~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 400 (450)
T 2jdq_A 324 ISILQTAEFRTRKEAAWAITNATSGG---SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400 (450)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence 99999999999999999999998643 26888899999999999999998877 8999999999987543322
Q ss_pred -------HHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHhhcCC
Q 041643 524 -------KALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTLYQAG 566 (576)
Q Consensus 524 -------~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~ 566 (576)
..+.+.|+++.|+ .+|+|.+.+++.+|..+|+.||+.
T Consensus 401 ~~~~~~~~~l~~~g~~~~l~------~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 401 TGINPYCALIEEAYGLDKIE------FLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp SCCCHHHHHHHHHHCHHHHH------HHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred cchhHHHHHHHHcCcHHHHH------HHHcCCCHHHHHHHHHHHHHHCCc
Confidence 3344555555554 446788899999999999999973
No 16
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=1.2e-27 Score=260.01 Aligned_cols=365 Identities=16% Similarity=0.147 Sum_probs=265.8
Q ss_pred ccccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041643 115 ITTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASL 189 (576)
Q Consensus 115 i~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~L 189 (576)
|...+.++.|+.+|.....+ +..|.+++..+.... ..+...+ .+..++..|++++.+.+..++.+|.+|
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g----~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK--MAVRLAG----GLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH--HHHHHHT----HHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH--HHHHHcC----CHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45679999999999653322 223334433211000 0001111 233347889999999999999999999
Q ss_pred hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC------------
Q 041643 190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE------------ 257 (576)
Q Consensus 190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s------------ 257 (576)
+..+++++..+++.|++|+|+++|++++....+..++.+|.||+.+++++..+++.|+++.|+++|++
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHH
Confidence 98888999999999999999999999875677888999999999999999999999988777766644
Q ss_pred ---------------------------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh
Q 041643 258 ---------------------------APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES 310 (576)
Q Consensus 258 ---------------------------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~ 310 (576)
++.+++..++|+|++|+.++++.+..+.+.|+++.|+.+|....
T Consensus 251 L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~--------- 321 (529)
T 1jdh_A 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG--------- 321 (529)
T ss_dssp HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT---------
T ss_pred HHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC---------
Confidence 45677777888888888777788888999999999999985320
Q ss_pred hhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccch
Q 041643 311 AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNA 390 (576)
Q Consensus 311 ~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~ 390 (576)
++++ ++..|+++|++|+.++... .
T Consensus 322 ---------------------------------------------~~~~----v~~~a~~~L~nl~~~~~~~-------~ 345 (529)
T 1jdh_A 322 ---------------------------------------------DRED----ITEPAICALRHLTSRHQEA-------E 345 (529)
T ss_dssp ---------------------------------------------TCHH----HHHHHHHHHHHHTSSSTTH-------H
T ss_pred ---------------------------------------------CHHH----HHHHHHHHHHHHHcCCchH-------H
Confidence 1122 4578999999999775431 1
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHH
Q 041643 391 ELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVI 466 (576)
Q Consensus 391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~ 466 (576)
..|+.... .++++.|+++|.+++++.++..++++|+|++...... +.+++|+|+++|++++++++++|+|
T Consensus 346 ~~~~~i~~------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 419 (529)
T 1jdh_A 346 MAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419 (529)
T ss_dssp HHHHHHHH------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHH------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc
Confidence 12322211 2468999999987664589999999999999754432 4588999999999889999999999
Q ss_pred HHHh--hcCCCCC---------------CCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHh
Q 041643 467 ALSK--FVSPDNF---------------NRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQ 528 (576)
Q Consensus 467 AL~n--la~~~n~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~ 528 (576)
+|+| +..+++. .+++++..+.+.|++++|+++|..++. ++..|..+|++++.+.+....+.+
T Consensus 420 ~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~ 499 (529)
T 1jdh_A 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 499 (529)
T ss_dssp ------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred ccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8887 3322110 024667789999999999999998877 999999999999866566778889
Q ss_pred ccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHh
Q 041643 529 ARALNALEGAARTVLPQHPELRDLFAQAIYHLTL 562 (576)
Q Consensus 529 ~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 562 (576)
.|+++.|+.+ ++|.+.+++.+|...|+.
T Consensus 500 ~~~~~~L~~l------~~~~~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 500 EGATAPLTEL------LHSRNEGVATYAAAVLFR 527 (529)
T ss_dssp TTCHHHHHHG------GGCSSHHHHHHHHHHHHH
T ss_pred cCChHHHHHH------hcCCCHHHHHHHHHHHHh
Confidence 9999999865 456778888888877754
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=7.5e-28 Score=276.50 Aligned_cols=270 Identities=16% Similarity=0.161 Sum_probs=221.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH-
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI- 242 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i- 242 (576)
+-.++.+|++++++.|++|+++|.||+.+ +++|..|++.|+||||+++|++++ +.+|++|+|||.||+.+.+....+
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhc
Confidence 44568999999999999999999999975 779999999999999999999999 999999999999999754432211
Q ss_pred --HHcCCHHHHHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643 243 --VDVLGVPIIVSVLGEA-PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV 319 (576)
Q Consensus 243 --v~~Gavp~LV~lL~s~-~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v 319 (576)
...|+||+|+++|.++ +...+..|+|+|.||+..+++.+..+.++|++|+|+.+|.++.
T Consensus 575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~------------------ 636 (810)
T 3now_A 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH------------------ 636 (810)
T ss_dssp THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC------------------
T ss_pred chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC------------------
Confidence 1246999999999876 3455678999999999988899999999999999999996431
Q ss_pred hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643 320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT 399 (576)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~ 399 (576)
+ .++..|+++|++|+.++. .+.. |..
T Consensus 637 --------------------------------------~----~Vq~~A~~~L~NLa~~~~-----------~~~~-~v~ 662 (810)
T 3now_A 637 --------------------------------------L----YLTRAAAQCLCNLVMSED-----------VIKM-FEG 662 (810)
T ss_dssp --------------------------------------T----THHHHHHHHHHHHTTSHH-----------HHHH-HHS
T ss_pred --------------------------------------H----HHHHHHHHHHHHHhCChH-----------HHHH-HHh
Confidence 1 146789999999997642 2222 211
Q ss_pred CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hh-hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643 400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KE-KRMIGPLVALLSNRNVDVATEAVIALSKFVS 473 (576)
Q Consensus 400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~-~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~ 473 (576)
+ .+.++.|+.++.+.+ ..+|..|+++|+||+...+. .+ .++||+|+++|+++++++++.|+|+|+|+++
T Consensus 663 ~----~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 663 N----NDRVKFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp S----SSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred c----cCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 1 146889999998765 89999999999999873322 23 6899999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHCCCcHhHHHhhccCh---h-HHHHHHHHHHHH
Q 041643 474 PDNFNRSEHSKAIIEFDGVPPLMRLLKISD---R-AQVHGLVFLCYL 516 (576)
Q Consensus 474 ~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d---~-vq~~A~~~L~~l 516 (576)
++ .++.++|++.||+++|++||+..| . +...|+.+|.++
T Consensus 738 ~s----~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 738 AG----EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp TC----HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 43 689999999999999999997652 3 555677777776
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.95 E-value=5.8e-27 Score=254.73 Aligned_cols=332 Identities=16% Similarity=0.164 Sum_probs=260.7
Q ss_pred ccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Q 041643 117 TNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG-QIKSRVDAANELASLA 190 (576)
Q Consensus 117 ~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La 190 (576)
..+.++.|+.+|....-+ +..|.+++..+... ..+... ...+..++..|+.+ +.+.+..|+.+|.+|+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~---~~~~~~---~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls 88 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR---HAIMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLS 88 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH---HHHHTC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH---HHHHhC---cchHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 568899999998642211 33444444422100 001001 01233447888877 8899999999999999
Q ss_pred hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHH
Q 041643 191 RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANL 269 (576)
Q Consensus 191 ~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~a 269 (576)
.+ ++++..|++.|+||+|+++|++++ +..|+.|+++|.||+.+ ++.+..+++.|++|.|+++|++++.+++..++.+
T Consensus 89 ~~-~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 89 HH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp TS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred cC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 86 679999999999999999999998 99999999999999996 5667788899999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCc
Q 041643 270 VARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYN 349 (576)
Q Consensus 270 L~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (576)
|.+++..+++++..+.+.|++++|+.+|++++
T Consensus 167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~------------------------------------------------ 198 (529)
T 1jdh_A 167 LQILAYGNQESKLIILASGGPQALVNIMRTYT------------------------------------------------ 198 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC------------------------------------------------
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC------------------------------------------------
Confidence 99999888999999999999999999996531
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHH
Q 041643 350 KKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIR 429 (576)
Q Consensus 350 ~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~ 429 (576)
++ ..+..++.+||+|+.+.. .|.... ..++++.|+.++.+++ +.++..+++
T Consensus 199 -------~~----~~~~~a~~~L~~l~~~~~-----------~~~~~~------~~g~~~~L~~ll~~~~-~~~~~~a~~ 249 (529)
T 1jdh_A 199 -------YE----KLLWTTSRVLKVLSVCSS-----------NKPAIV------EAGGMQALGLHLTDPS-QRLVQNCLW 249 (529)
T ss_dssp -------CH----HHHHHHHHHHHHHTTSTT-----------HHHHHH------HTTHHHHHHTTTTSSC-HHHHHHHHH
T ss_pred -------hH----HHHHHHHHHHHHHhcCcc-----------cHHHHH------HCCCHHHHHHHHhCCC-hHHHHHHHH
Confidence 01 134678999999996532 222111 1257899999998765 889999999
Q ss_pred HHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Ch-h-
Q 041643 430 SIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SD-R- 504 (576)
Q Consensus 430 aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d-~- 504 (576)
+|+||++..+.. ..+++|.|+++|++.+++++..|+|+|++++..+ +++++.+.+.||++.|+++|.. ++ .
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~----~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 999999865432 2368999999999999999999999999998642 6889999999999999999975 33 3
Q ss_pred HHHHHHHHHHHHhcccCc----hHHHHhccchhhHhh
Q 041643 505 AQVHGLVFLCYLALSAGN----SKALEQARALNALEG 537 (576)
Q Consensus 505 vq~~A~~~L~~lal~~~~----~~~l~~~~~l~~Le~ 537 (576)
++..|+.+|++++.+.++ ...+.+.|+++.|..
T Consensus 326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~ 362 (529)
T 1jdh_A 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 362 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHH
Confidence 889999999999876554 347788999999873
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=261.32 Aligned_cols=369 Identities=15% Similarity=0.149 Sum_probs=252.9
Q ss_pred ccccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041643 115 ITTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASL 189 (576)
Q Consensus 115 i~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~L 189 (576)
|...+.++.|+.+|.+...+ +..|.+++....... ..+...+ .+..++..|++++.+.+..++.+|.+|
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~--~~v~~~g----~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK--MAVRLAG----GLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH--HHHHHTT----HHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH--HHHHHCC----ChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 45679999999999653322 233344443210000 0011111 233348899999988888888899999
Q ss_pred hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhH-------
Q 041643 190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKV------- 262 (576)
Q Consensus 190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~v------- 262 (576)
+..+++++..+++.|+|++|+++|++++....++.++.+|.||+.+++++..++++|+++.|+++|++++..+
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 9877899999999999999999999887578899999999999999999999999999998888776654444
Q ss_pred --------------------------------HHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh
Q 041643 263 --------------------------------QVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES 310 (576)
Q Consensus 263 --------------------------------q~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~ 310 (576)
++.|+|+|.+|+.+++..+..+.+.|+|+.|+.+|...
T Consensus 248 L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~---------- 317 (644)
T 2z6h_A 248 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---------- 317 (644)
T ss_dssp HHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH----------
T ss_pred HHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc----------
Confidence 44455555555544445555555555555555555321
Q ss_pred hhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccch
Q 041643 311 AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNA 390 (576)
Q Consensus 311 ~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~ 390 (576)
.+.++ ++..|+++|++|+.++.+. .
T Consensus 318 --------------------------------------------~~~~~----v~~~a~~aL~nL~~~~~~~-------~ 342 (644)
T 2z6h_A 318 --------------------------------------------GDRED----ITEPAICALRHLTSRHQEA-------E 342 (644)
T ss_dssp --------------------------------------------TTCHH----HHHHHHHHHHHHTSSSTTH-------H
T ss_pred --------------------------------------------CCcHH----HHHHHHHHHHHHhcCCchH-------H
Confidence 00123 4678999999998754321 0
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHH
Q 041643 391 ELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVI 466 (576)
Q Consensus 391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~ 466 (576)
..|...++ .++++.|+++|.+.+++.++..|+++|+||+...... +.++||+|+++|.+.+.+++++|+|
T Consensus 343 ~~q~~v~~------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~ 416 (644)
T 2z6h_A 343 MAQNAVRL------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416 (644)
T ss_dssp HHHHHHHH------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHH------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence 11211111 2468999999987654689999999999999754432 4589999999998876666666666
Q ss_pred HHHh--hcCCCCC---------------CCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHh
Q 041643 467 ALSK--FVSPDNF---------------NRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQ 528 (576)
Q Consensus 467 AL~n--la~~~n~---------------~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~ 528 (576)
+++| ++.+++. .+.+++..+.+.|++++|+++|..++. ++..|+.+|++++.+.+....+.+
T Consensus 417 al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~ 496 (644)
T 2z6h_A 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496 (644)
T ss_dssp -------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred ccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6655 3322110 013455788899999999999998877 999999999999877666788889
Q ss_pred ccchhhHhhhhcccCCCCCcHHHH------------------HHH--HHHHHHhhcCC
Q 041643 529 ARALNALEGAARTVLPQHPELRDL------------------FAQ--AIYHLTLYQAG 566 (576)
Q Consensus 529 ~~~l~~Le~~~~~~~~q~~~~~~l------------------~~~--a~~~l~~y~~~ 566 (576)
.|+++.|+.+. ++.+.++ |.+ +..+++.||..
T Consensus 497 ~g~l~~L~~ll------~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~ 548 (644)
T 2z6h_A 497 EGATAPLTELL------HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT 548 (644)
T ss_dssp TTCHHHHHHHT------TCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCC
T ss_pred cCChhHHHHHH------cCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhC
Confidence 99999987442 2333334 666 78888988873
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=4.2e-27 Score=248.32 Aligned_cols=262 Identities=15% Similarity=0.130 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC-----------CChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q 041643 219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE-----------APVKVQVAVANLVARMAELDSIAQEEFVRE 287 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s-----------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~ 287 (576)
...+..|+|+|.||+.++++|..|++.|++++|+.+|.+ .+.++|..|+|+|.||+.+++..|..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456679999999999999999999999999999999952 236799999999999999888888888655
Q ss_pred -CCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHH
Q 041643 288 -NVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRI 366 (576)
Q Consensus 288 -g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~ 366 (576)
|+||+||.+|+++ |++ +++
T Consensus 126 ~GaIp~LV~LL~s~--------------------------------------------------------~~~----v~~ 145 (354)
T 3nmw_A 126 KGCMRALVAQLKSE--------------------------------------------------------SED----LQQ 145 (354)
T ss_dssp HHHHHHHHHGGGCS--------------------------------------------------------CHH----HHH
T ss_pred CCcHHHHHHHHCCC--------------------------------------------------------CHH----HHH
Confidence 5699999999643 222 468
Q ss_pred HHHHHHHHhhcC-CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----
Q 041643 367 ACAEALWKLSKG-CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA----- 440 (576)
Q Consensus 367 ~Aa~ALw~La~g-~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~----- 440 (576)
.|++||++|+.+ +.. .|.... ..++|+.|+++|.++.++.++.+|+++|+||+...++
T Consensus 146 ~A~~aL~nLs~~~~~~----------~k~~i~------~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i 209 (354)
T 3nmw_A 146 VIASVLRNLSWRADVN----------SKKTLR------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209 (354)
T ss_dssp HHHHHHHHHHTTCCHH----------HHHHHH------HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCCHH----------HHHHHH------HCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence 899999999986 322 222111 1257899999765444588999999999999973322
Q ss_pred h-hhCcHHHHHHhhcCCCH----HHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHH
Q 041643 441 K-EKRMIGPLVALLSNRNV----DVATEAVIALSKFVS--PDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVF 512 (576)
Q Consensus 441 ~-~~~~I~~LV~LL~~~~~----~V~~eAa~AL~nla~--~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~ 512 (576)
. ..|+||+||++|++++. +++++|+|+|.|++. .+ ++++++.|++.|++++|++||++++. +|..|+++
T Consensus 210 ~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC---CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 1 45899999999987654 599999999999984 11 26889999999999999999998877 99999999
Q ss_pred HHHHhc-ccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHHHh
Q 041643 513 LCYLAL-SAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHLTL 562 (576)
Q Consensus 513 L~~lal-~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 562 (576)
|++++. +..+...+.++|++++|..+.+.. +...++-...|+..|..
T Consensus 287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~---~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHc
Confidence 999984 566678899999999998543222 33444545555555543
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2e-25 Score=218.46 Aligned_cols=239 Identities=28% Similarity=0.323 Sum_probs=209.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIV 243 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv 243 (576)
..++..|++++.+.|..|+..|.+++..+++++..+++.|+||+|+++|++++ +..|..|+++|.+|+.+ ++++..++
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34588999999999999999999999887779999999999999999999998 99999999999999997 78899999
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~ 323 (576)
+.|++|.|+++|++++.+++..|+++|++|+..+++.+..+.+.|+++.|+.+|+++
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----------------------- 140 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----------------------- 140 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-----------------------
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----------------------
Confidence 999999999999999999999999999999988899999999999999999999532
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643 324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA 403 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a 403 (576)
|++ ++..|+++|++|+.++..+ +
T Consensus 141 ---------------------------------~~~----~~~~a~~~L~~l~~~~~~~----------~---------- 163 (252)
T 4hxt_A 141 ---------------------------------DSE----VQKEAARALANIASGPDEA----------I---------- 163 (252)
T ss_dssp ---------------------------------CHH----HHHHHHHHHHHHTTSCHHH----------H----------
T ss_pred ---------------------------------CHH----HHHHHHHHHHHHHcCCHHH----------H----------
Confidence 222 4578999999998764210 0
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS 483 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~ 483 (576)
..+ .+.+++|.|+.+|++.+++++..|+|+|++++.. +++++
T Consensus 164 -----~~~-----------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~ 205 (252)
T 4hxt_A 164 -----KAI-----------------------------VDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PTSAI 205 (252)
T ss_dssp -----HHH-----------------------------HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----BHHHH
T ss_pred -----HHH-----------------------------HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHH
Confidence 001 1346899999999999999999999999999863 26889
Q ss_pred HHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643 484 KAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 484 ~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~ 522 (576)
+.+.+.|+++.|++++++++. ++..|+++|+++..+.++
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999998877 999999999999866554
No 22
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=251.22 Aligned_cols=333 Identities=16% Similarity=0.164 Sum_probs=261.3
Q ss_pred cccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 041643 116 TTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG-QIKSRVDAANELASL 189 (576)
Q Consensus 116 ~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~L 189 (576)
+..+.++.|+.+|....-. +..|.+++....... .+.... ..+..++..|+++ +.+.+..|+.+|.+|
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~---~i~~~~---~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIMRSP---QMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHH---HHTTCH---HHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHH---HHHhcc---ChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3578899999999642221 344445544221100 011111 1234457888887 899999999999999
Q ss_pred hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHH
Q 041643 190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVAN 268 (576)
Q Consensus 190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~ 268 (576)
+.. ++++..|++.|+||+|+++|++++ +..|+.|+++|.||+.+ ++.+..+++.|++|.|+++|++++.+++..++.
T Consensus 85 s~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 85 SHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp TTS-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hcC-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 986 679999999999999999999988 99999999999999986 466778889999999999999998888888888
Q ss_pred HHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCC
Q 041643 269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHY 348 (576)
Q Consensus 269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (576)
+|.+|+..+++.+..+.+.|+|+.|+.+|++++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~----------------------------------------------- 195 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYT----------------------------------------------- 195 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-----------------------------------------------
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-----------------------------------------------
Confidence 999999878899999999999999999996431
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHH
Q 041643 349 NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAI 428 (576)
Q Consensus 349 ~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~ 428 (576)
++ .++..++.+||+|+.+.. .|+..+. .++++.|+.++.+.+ +.++..++
T Consensus 196 --------~~----~~~~~a~~~L~nLs~~~~-----------~~~~l~~------~g~l~~L~~ll~~~~-~~~~~~a~ 245 (644)
T 2z6h_A 196 --------YE----KLLWTTSRVLKVLSVCSS-----------NKPAIVE------AGGMQALGLHLTDPS-QRLVQNCL 245 (644)
T ss_dssp --------CH----HHHHHHHHHHHHHTTCTT-----------HHHHHHH------TTHHHHHHTTTTCSC-HHHHHHHH
T ss_pred --------hH----HHHHHHHHHHHHHhcCcc-----------cHHHHHH------CCCHHHHHHHHhcCC-HHHHHHHH
Confidence 11 134679999999996532 2322211 257899999998765 88999999
Q ss_pred HHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Ch--
Q 041643 429 RSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SD-- 503 (576)
Q Consensus 429 ~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d-- 503 (576)
++|+||++..+.. ..+++|.|+++|++.+.++++.|+|+|++++... .++++.+.+.|+++.|+++|.. ++
T Consensus 246 ~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~----~~~~~~v~~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 246 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence 9999999765432 2368999999999999999999999999998643 5889999999999999999986 33
Q ss_pred hHHHHHHHHHHHHhcccCch----HHHHhccchhhHhh
Q 041643 504 RAQVHGLVFLCYLALSAGNS----KALEQARALNALEG 537 (576)
Q Consensus 504 ~vq~~A~~~L~~lal~~~~~----~~l~~~~~l~~Le~ 537 (576)
.++..|+.+|++++.+.++. ..+...|+++.|..
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~ 359 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHH
Confidence 38999999999998654542 34667899999873
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=7e-26 Score=223.46 Aligned_cols=234 Identities=19% Similarity=0.259 Sum_probs=201.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHH
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVD 244 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~ 244 (576)
.++..|++++.+.+..|+..|.++...++++++.+++.|+||+|+++|++++ +..|..|+++|.||+. +++++..+++
T Consensus 16 ~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3478999999999999999997766656788999999999999999999998 9999999999999998 6788999999
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643 245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE 324 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~ 324 (576)
.|++|.|+++|++++.+++..|+|+|++|+.+++.....+.+.|+|+.|+.+|.++
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------------------------ 150 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------------------------ 150 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS------------------------
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC------------------------
Confidence 99999999999999999999999999999987655548899999999999999532
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643 325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA 404 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~ 404 (576)
|++ ++..|+++|++|+.++.++
T Consensus 151 --------------------------------~~~----v~~~a~~~L~~l~~~~~~~---------------------- 172 (252)
T 4db8_A 151 --------------------------------NEQ----ILQEALWALSNIASGGNEQ---------------------- 172 (252)
T ss_dssp --------------------------------CHH----HHHHHHHHHHHHTTSCHHH----------------------
T ss_pred --------------------------------CHH----HHHHHHHHHHHHHcCChHH----------------------
Confidence 222 4578999999998764210
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
...+ .+.+++|+|+++|++.++++++.|+|+|++++.. ++++++
T Consensus 173 ---~~~~-----------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~ 216 (252)
T 4db8_A 173 ---IQAV-----------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQKQ 216 (252)
T ss_dssp ---HHHH-----------------------------HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS----CHHHHH
T ss_pred ---HHHH-----------------------------HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 0001 1347899999999999999999999999999853 268899
Q ss_pred HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643 485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL 518 (576)
Q Consensus 485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal 518 (576)
.+++.|+++.|+++|.+++. ++..|+++|++++.
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998877 99999999998863
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=5.1e-25 Score=254.35 Aligned_cols=342 Identities=16% Similarity=0.151 Sum_probs=241.0
Q ss_pred ccccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041643 115 ITTNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASL 189 (576)
Q Consensus 115 i~~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~L 189 (576)
|...+.++.|+.+|...... +..|.+++....... ..+...+ .+..++.+|+.++.+.+..++.+|.+|
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~--~~v~~~g----~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK--MAVRLAG----GLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH--HHHHHTT----HHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH--HHHHHcC----CHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44678999999999653222 334444543210000 0000111 233348889999999999999999999
Q ss_pred hhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHH---
Q 041643 190 ARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAV--- 266 (576)
Q Consensus 190 a~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~A--- 266 (576)
+..+++++..+++.|+|++|+++|++++....++.|+.+|.+|+.+++++..++++|+++.|+.+|.+++..++..+
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 98778999999999999999999999875667789999999999999999999999988888877766554444444
Q ss_pred ------------------------------------HHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchh
Q 041643 267 ------------------------------------ANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPES 310 (576)
Q Consensus 267 ------------------------------------a~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~ 310 (576)
+|+|++|+.++++.+..+.+.|+|+.|+.+|...
T Consensus 384 L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---------- 453 (780)
T 2z6g_A 384 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---------- 453 (780)
T ss_dssp HHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH----------
T ss_pred HHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc----------
Confidence 4455555444444455555555555555555321
Q ss_pred hhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccch
Q 041643 311 AKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNA 390 (576)
Q Consensus 311 ~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~ 390 (576)
.++ ..++..|+++|++|+.++.+. .
T Consensus 454 ---------------------------------------------~~~---~~v~~~Al~aL~nL~~~~~~~-------~ 478 (780)
T 2z6g_A 454 ---------------------------------------------GDR---EDITEPAICALRHLTSRHQDA-------E 478 (780)
T ss_dssp ---------------------------------------------TTC---HHHHHHHHHHHHHTTSSSTTH-------H
T ss_pred ---------------------------------------------CCH---HHHHHHHHHHHHHHHhcCchH-------H
Confidence 111 024678999999998764331 0
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHH
Q 041643 391 ELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVI 466 (576)
Q Consensus 391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~ 466 (576)
..|.... ..++++.|+++|.+.+.+.++..|+.+|+||+...... +.++||+|+++|++++.+++++|+|
T Consensus 479 ~~~~~v~------~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 479 MAQNAVR------LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp HHHHHHH------HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHH------HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 1121111 12458899999987764589999999999999754332 4588999999998766555555544
Q ss_pred ----------------------HHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643 467 ----------------------ALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS 523 (576)
Q Consensus 467 ----------------------AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~ 523 (576)
+|++++. +++++..|.+.|++++|++||++++. ++..|+.+|++++.+.+..
T Consensus 553 al~nq~~~~~~~~~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 627 (780)
T 2z6g_A 553 GGTQQQFVEGVRMEEIVEACTGALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 627 (780)
T ss_dssp -----CCSTTCCHHHHHHHHHHHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred ccccchhhcccChHHHHHHHHHHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 5555553 24666779999999999999998877 9999999999998776777
Q ss_pred HHHHhccchhhHhhh
Q 041643 524 KALEQARALNALEGA 538 (576)
Q Consensus 524 ~~l~~~~~l~~Le~~ 538 (576)
..|.+.|+++.|+.+
T Consensus 628 ~~i~~~g~i~~L~~L 642 (780)
T 2z6g_A 628 EAIEAEGATAPLTEL 642 (780)
T ss_dssp HHHHHTTCHHHHHHG
T ss_pred HHHHHCCCHHHHHHH
Confidence 889999999998743
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.93 E-value=6.1e-24 Score=245.38 Aligned_cols=332 Identities=15% Similarity=0.166 Sum_probs=261.6
Q ss_pred ccccHHHHHHHHHhhhcc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Q 041643 117 TNADFKKVFSLLESSIGD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMG-QIKSRVDAANELASLA 190 (576)
Q Consensus 117 ~~~~l~~l~~~L~~~~~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G-~~e~k~~AA~~L~~La 190 (576)
..+.++.|+.+|...... +..|.+++....... .+... ...+..++..|+.+ +.+.|..|+.+|.+|+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~---~i~~~---~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls 221 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH---AIMRS---PQMVSAIVRTMQNTNDVETARCTSGTLHNLS 221 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH---HHTTC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH---HHHhc---cChHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 478999999999642211 344455554321100 01111 01244457888877 8999999999999999
Q ss_pred hcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHH
Q 041643 191 RDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANL 269 (576)
Q Consensus 191 ~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~a 269 (576)
.. +.++..|++.|+||+|+++|++++ +.+|+.|+++|.||+.+ ++.+..+++.|+||.|+++|++++.+++..++.+
T Consensus 222 ~~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~a 299 (780)
T 2z6g_A 222 HH-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 299 (780)
T ss_dssp TS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred CC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 86 678999999999999999999998 99999999999999996 5667778899999999999999989999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCc
Q 041643 270 VARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYN 349 (576)
Q Consensus 270 L~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (576)
|.+++..+++.+..+.+.|+++.|+.+|+.++
T Consensus 300 L~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~------------------------------------------------ 331 (780)
T 2z6g_A 300 LQILAYGNQESKLIILASGGPQALVNIMRTYT------------------------------------------------ 331 (780)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC------------------------------------------------
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC------------------------------------------------
Confidence 99999878899999999999999999996431
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHH
Q 041643 350 KKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIR 429 (576)
Q Consensus 350 ~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~ 429 (576)
+ + ..+..++.+||+|+.... .|.... ..++++.|+.++.+.+ +.++..|+.
T Consensus 332 -------~-~---~~~~~a~~aL~~Ls~~~~-----------~~~~i~------~~g~l~~Ll~lL~~~~-~~~~~~a~~ 382 (780)
T 2z6g_A 332 -------Y-E---KLLWTTSRVLKVLSVCSS-----------NKPAIV------EAGGMQALGLHLTDPS-QRLVQNCLW 382 (780)
T ss_dssp -------C-H---HHHHHHHHHHHHHHTSTT-----------HHHHHH------HTTHHHHHGGGTTCSC-HHHHHHHHH
T ss_pred -------H-H---HHHHHHHHHHHHhhcChH-----------HHHHHH------HhchHHHHHHHHcCCc-hHHHHHHHH
Confidence 0 1 134678999999996432 122111 1257899999998765 789999999
Q ss_pred HHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhcc-Ch--h
Q 041643 430 SIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKI-SD--R 504 (576)
Q Consensus 430 aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~-~d--~ 504 (576)
+|.||++..... ..++||+|+.+|++.+.+++..|+|+|++++... .++++.+++.||++.|+++|.. ++ .
T Consensus 383 ~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 458 (780)
T 2z6g_A 383 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVLRAGDRED 458 (780)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC----HHHHHHHHTTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHHHHHccCCHHH
Confidence 999999765431 2468999999999999999999999999998643 5889999999999999999975 33 4
Q ss_pred HHHHHHHHHHHHhcccCch----HHHHhccchhhHhh
Q 041643 505 AQVHGLVFLCYLALSAGNS----KALEQARALNALEG 537 (576)
Q Consensus 505 vq~~A~~~L~~lal~~~~~----~~l~~~~~l~~Le~ 537 (576)
++..|+++|++|+.+.++. ..+...++++.|..
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~ 495 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence 8899999999998655553 36778899999873
No 26
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=8.5e-25 Score=225.30 Aligned_cols=228 Identities=17% Similarity=0.165 Sum_probs=186.8
Q ss_pred hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHH-hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhh
Q 041643 219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVS-VLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLL 297 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~-lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL 297 (576)
.+.+..|+..|.++..+.++...+++.|++|+|+. +|++++++++++|+|+|++++.+++.+|+.+.+.|++|+|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 67889999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc
Q 041643 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK 377 (576)
Q Consensus 298 ~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~ 377 (576)
++++ ++ .++..|+|||++|+.
T Consensus 134 ~~~~-------------------------------------------------------~~----~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 134 DRDA-------------------------------------------------------CD----TVRVKALFAISCLVR 154 (296)
T ss_dssp HHCS-------------------------------------------------------CH----HHHHHHHHHHHHHHT
T ss_pred ccCC-------------------------------------------------------CH----HHHHHHHHHHHHHHc
Confidence 6431 12 246789999999987
Q ss_pred CCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCC
Q 041643 378 GCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRN 457 (576)
Q Consensus 378 g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~ 457 (576)
|+... .+.+ .+.++||+|+.+|++++
T Consensus 155 ~~~~~-------------------------~~~~-----------------------------~~~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 155 EQEAG-------------------------LLQF-----------------------------LRLDGFSVLMRAMQQQV 180 (296)
T ss_dssp TCHHH-------------------------HHHH-----------------------------HHTTHHHHHHHHHHSSC
T ss_pred CCcHH-------------------------HHHH-----------------------------HHCCCHHHHHHHHcCCC
Confidence 74210 0001 12467999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhcc---chh
Q 041643 458 VDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQAR---ALN 533 (576)
Q Consensus 458 ~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~---~l~ 533 (576)
+.++++|+|+|++++.+. +++++.+++.|++++|+.||.+++. +|..|+.+|++|+...+........+ ...
T Consensus 181 ~~v~~~A~~aLs~L~~~~----~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~ 256 (296)
T 1xqr_A 181 QKLKVKSAFLLQNLLVGH----PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEE 256 (296)
T ss_dssp HHHHHHHHHHHHHHHHHC----GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHH
T ss_pred HHHHHHHHHHHHHHHhCC----hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHH
Confidence 999999999999998653 5889999999999999999998887 99999999999976533322332332 233
Q ss_pred hHhhhhcccCCCCCc-HHHHHHHHHHHHHhhcC
Q 041643 534 ALEGAARTVLPQHPE-LRDLFAQAIYHLTLYQA 565 (576)
Q Consensus 534 ~Le~~~~~~~~q~~~-~~~l~~~a~~~l~~y~~ 565 (576)
.|+. +++.+|.|+ ++++|+++..+++.||+
T Consensus 257 lL~~--~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 257 LLRH--RCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHH--HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHH--HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 3442 234567555 89999999999999997
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=8.1e-24 Score=231.79 Aligned_cols=361 Identities=14% Similarity=0.143 Sum_probs=255.0
Q ss_pred ccccccHHHHHHHHHhhh-cc-----hHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643 115 ITTNADFKKVFSLLESSI-GD-----MRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS 188 (576)
Q Consensus 115 i~~~~~l~~l~~~L~~~~-~~-----~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~ 188 (576)
++..+.++.|+.+|.... .+ +..|-+++..+.... ..+...+. +-.++.+|++++.+.+..|+++|.+
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~----i~~L~~lL~~~~~~v~~~a~~aL~~ 186 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT--KVVIDHGA----VPIFVKLLGSSSDDVREQAVWALGN 186 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTH----HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHhCCc----HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 457899999999996543 22 223334443210000 00111112 2233789999999999999999999
Q ss_pred HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHH
Q 041643 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVAN 268 (576)
Q Consensus 189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~ 268 (576)
|+.+++.++..+.+.|+||+|+++|..+.++..+.+|+|+|.+|+.+.......+..|++|.|+++|.+++.+++..++|
T Consensus 187 l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 266 (528)
T 4b8j_A 187 VAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACW 266 (528)
T ss_dssp HHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99887888999999999999999995443399999999999999997655556667999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCC
Q 041643 269 LVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHY 348 (576)
Q Consensus 269 aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (576)
+|++|+...+...+.+.+.|+++.|+.+|.++.. .-......++.++........... + ..|+++.
T Consensus 267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~---~v~~~a~~~L~nl~~~~~~~~~~~---------~--~~~~l~~ 332 (528)
T 4b8j_A 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP---SVLIPALRTVGNIVTGDDAQTQCI---------I--DHQALPC 332 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCH---HHHHHHHHHHHHHTTSCHHHHHHH---------H--TTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCCh---hHHHHHHHHHHHHHcCCHHHHHHH---------H--HhhhHHH
Confidence 9999998877777888999999999999976520 000001112222211000000000 0 0123343
Q ss_pred cccccccC-CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHH
Q 041643 349 NKKDRELE-TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPA 427 (576)
Q Consensus 349 ~~~~~e~~-d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a 427 (576)
+....... ++.+ +..|+|+|++|+.++.+. ++..+. .++++.|+.+|.+++ +.++..|
T Consensus 333 L~~lL~~~~~~~v----~~~A~~~L~nl~~~~~~~----------~~~~~~------~~~i~~L~~lL~~~~-~~v~~~a 391 (528)
T 4b8j_A 333 LLSLLTQNLKKSI----KKEACWTISNITAGNKDQ----------IQAVIN------AGIIGPLVNLLQTAE-FDIKKEA 391 (528)
T ss_dssp HHHHHHSCCCHHH----HHHHHHHHHHHHTSCHHH----------HHHHHH------TTCHHHHHHHHHHSC-HHHHHHH
T ss_pred HHHHHcCCCcHHH----HHHHHHHHHHHHCCCHHH----------HHHHHH------CCCHHHHHHHHhcCC-HHHHHHH
Confidence 22223333 5554 578999999999875432 111111 246889999998875 8999999
Q ss_pred HHHHHHHhcCCc-h-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC-------CCHHHHHHHHHCCCcHh
Q 041643 428 IRSIGCLAKTFP-A-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNF-------NRSEHSKAIIEFDGVPP 494 (576)
Q Consensus 428 ~~aLgnLa~~~~-~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~-------~~~~~~~~Iv~~ggi~~ 494 (576)
+.+|+|++.... . .+.++|++|+.+|.+.+.+++..|.++|.++...+.. ........|.+.||+..
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 999999997632 2 1358999999999999999999999999999742200 00124678899999999
Q ss_pred HHHhhccChh-HHHHHHHHHHHH
Q 041643 495 LMRLLKISDR-AQVHGLVFLCYL 516 (576)
Q Consensus 495 Lv~LL~~~d~-vq~~A~~~L~~l 516 (576)
|..|.++.+. ++..|..++-.+
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999988776 888888888766
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=214.78 Aligned_cols=209 Identities=18% Similarity=0.217 Sum_probs=166.7
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchH
Q 041643 163 WVWSFISTIQMGQI--KSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETV 239 (576)
Q Consensus 163 ~v~~li~~L~~G~~--e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~ 239 (576)
.+..+|..|++++. +.+..|+..|.+|+..+++++..|++.|+||+||++|++++ ++.|+.|+|||+||+. +++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 34555899999988 88899999999999888899999999999999999999998 9999999999999998 57899
Q ss_pred HHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc---cccccCCCcchhhhhHH
Q 041643 240 RFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC---MDIALDLPKPESAKTTI 315 (576)
Q Consensus 240 ~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~---~~t~~~~~~~i~~~~si 315 (576)
..|+++||||+||++|+ +++.++|++|+.+|.||+.. +.+|..|.+. +||+|+.+|. +|...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~------------ 153 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPE------------ 153 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCG------------
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcc------------
Confidence 99999999999999997 57899999999999999975 5778888875 6999999874 22100
Q ss_pred HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHh
Q 041643 316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRS 395 (576)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~ 395 (576)
+... |.....|+++ +++|+++|++||..+. +-|+.
T Consensus 154 -----------------------------~~~~--~~~~~~~~~v----~~na~~~L~nLss~~~----------~~R~~ 188 (233)
T 3tt9_A 154 -----------------------------GDYP--KANGLLDFDI----FYNVTGCLRNMSSAGA----------DGRKA 188 (233)
T ss_dssp -----------------------------GGCC--CCCTTCCHHH----HHHHHHHHHHHTTSCH----------HHHHH
T ss_pred -----------------------------cccc--cccccchHHH----HHHHHHHHHHHhcCCH----------HHHHH
Confidence 0001 2222346654 5899999999987642 23332
Q ss_pred hhccCchhHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHhc
Q 041643 396 AFKTNSPAAKAVLDQLLRLIHEE-----SDAMLQTPAIRSIGCLAK 436 (576)
Q Consensus 396 a~k~~s~a~~~vV~~Ll~lL~~~-----~~~~lq~~a~~aLgnLa~ 436 (576)
... +.|+|+.|+.+++.. .++..+++|+++|.||+.
T Consensus 189 ~r~-----~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 189 MRR-----CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHT-----STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHH-----CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 111 236899999999763 135789999999999974
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=6.2e-23 Score=225.28 Aligned_cols=360 Identities=13% Similarity=0.147 Sum_probs=255.4
Q ss_pred ccccccHHHHHHHHHhh-hcc----hHHH-hhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643 115 ITTNADFKKVFSLLESS-IGD----MRWL-LTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS 188 (576)
Q Consensus 115 i~~~~~l~~l~~~L~~~-~~~----~~~l-l~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~ 188 (576)
++..+.++.|+..|... ..+ ..|. -++...+.... ..+...+. +..++.+|++++.+.+..|+++|.+
T Consensus 126 ~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~----i~~Lv~lL~~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT--KVVVDADA----VPLFIQLLYTGSVEVKEQAIWALGN 199 (530)
T ss_dssp HHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTC----HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHHCCC----HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45689999999999653 222 2233 33433210000 00001111 2233788899999999999999999
Q ss_pred HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHH
Q 041643 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVA 267 (576)
Q Consensus 189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa 267 (576)
|+.+++.++..+++.|++|+|+++|.+.+ +..+..|+|+|.+|+.+. .........|++|.|+++|.+++..++..++
T Consensus 200 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~ 278 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278 (530)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence 99887889999999999999999999977 999999999999999875 5556677799999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCC
Q 041643 268 NLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQ 346 (576)
Q Consensus 268 ~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (576)
|+|.+|+...++.+..+.+.|+++.|+.+|.++. .. .......+.++........... + ..|++
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~---------~--~~~~l 343 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES----TLVQTPALRAVGNIVTGNDLQTQVV---------I--NAGVL 343 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC----HHHHHHHHHHHHHHTTSCHHHHHHH---------H--HTTHH
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC----hhhHHHHHHHHHHHHcCCHHHHHHH---------H--HcchH
Confidence 9999999888888888999999999999997542 10 0000112222111000000000 0 00233
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHH
Q 041643 347 HYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTP 426 (576)
Q Consensus 347 ~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~ 426 (576)
+.+.......++.+ +..|+++|++|+.++... ++..+. .++++.|+.+|.+++ +.++..
T Consensus 344 ~~L~~lL~~~~~~v----r~~A~~aL~~l~~~~~~~----------~~~~~~------~~~l~~L~~lL~~~~-~~v~~~ 402 (530)
T 1wa5_B 344 PALRLLLSSPKENI----KKEACWTISNITAGNTEQ----------IQAVID------ANLIPPLVKLLEVAE-YKTKKE 402 (530)
T ss_dssp HHHHHHTTCSCHHH----HHHHHHHHHHHTTSCHHH----------HHHHHH------TTCHHHHHHHHHHSC-HHHHHH
T ss_pred HHHHHHHcCCCHHH----HHHHHHHHHHHHcCCHHH----------HHHHHH------CCCHHHHHHHHhcCC-HHHHHH
Confidence 33222233345554 578999999999875432 221111 246889999998765 899999
Q ss_pred HHHHHHHHhcCCc---h-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC-------CCHHHHHHHHHCCC
Q 041643 427 AIRSIGCLAKTFP---A-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNF-------NRSEHSKAIIEFDG 491 (576)
Q Consensus 427 a~~aLgnLa~~~~---~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~-------~~~~~~~~Iv~~gg 491 (576)
|+.+|+|++.... . .+.++||+|+.+|.+.+++++..|+++|.+++..... ........+.+.||
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~ 482 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG 482 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCc
Confidence 9999999987542 1 2457999999999999999999999999999742200 00134577999999
Q ss_pred cHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 492 VPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 492 i~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
++.|..|+.+.+. ++..|..+|..+-
T Consensus 483 ~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 483 MEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999998877 8889999887773
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=1.1e-22 Score=216.26 Aligned_cols=359 Identities=13% Similarity=0.106 Sum_probs=251.0
Q ss_pred ccc-ccHHHHHHHHHhh-hcch----HHHh-hhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041643 116 TTN-ADFKKVFSLLESS-IGDM----RWLL-TIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELAS 188 (576)
Q Consensus 116 ~~~-~~l~~l~~~L~~~-~~~~----~~ll-~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~ 188 (576)
+.. +.++.|+..|... ..++ .|.+ ++...+.... ..+...+ .+-.++..|++++.+.|..|+.+|.+
T Consensus 60 ~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~----~i~~L~~lL~~~~~~vr~~a~~~L~~ 133 (450)
T 2jdq_A 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT--RIVIQAG----AVPIFIELLSSEFEDVQEQAVWALGN 133 (450)
T ss_dssp HTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH--HHHHHTT----HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHhCC----CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345 8899999999654 2221 2222 3333110000 0011111 23344789999999999999999999
Q ss_pred HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC--chHHHHHHcCCHHHHHHhhcCCChhHHHHH
Q 041643 189 LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQ--ETVRFIVDVLGVPIIVSVLGEAPVKVQVAV 266 (576)
Q Consensus 189 La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~--~~~~~iv~~Gavp~LV~lL~s~~~~vq~~A 266 (576)
++.+++.++..+++.|++|+|+++|+++.++..+..|+|+|++|+.+. .....++ .|++|.|+++|++++..++..+
T Consensus 134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a 212 (450)
T 2jdq_A 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADA 212 (450)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHH
T ss_pred HccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHH
Confidence 999877889999999999999999996433999999999999999753 3333344 8999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCc-chhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCC
Q 041643 267 ANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPK-PESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHG 345 (576)
Q Consensus 267 a~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~-~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (576)
+|+|.+++.+.++.+..+...|++++|+.+|.++. .. ......++.++.......... +. ..|+
T Consensus 213 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~----------~~-~~~~ 277 (450)
T 2jdq_A 213 CWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND----YKVVSPALRAVGNIVTGDDIQTQV----------IL-NCSA 277 (450)
T ss_dssp HHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC----HHHHHHHHHHHHHHTTSCHHHHHH----------HH-TTTH
T ss_pred HHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc----hhHHHHHHHHHHHHhhCChHHHHH----------HH-HCcc
Confidence 99999999887888888999999999999997532 11 000111222221110000000 00 0123
Q ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHH
Q 041643 346 QHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQT 425 (576)
Q Consensus 346 ~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~ 425 (576)
++.+.......++.+ +..|+++|.+|+.++... ++..+. .++++.|+.++.+++ +.++.
T Consensus 278 l~~L~~ll~~~~~~v----r~~a~~~L~~l~~~~~~~----------~~~~~~------~~~l~~L~~~l~~~~-~~v~~ 336 (450)
T 2jdq_A 278 LQSLLHLLSSPKESI----KKEACWTISNITAGNRAQ----------IQTVID------ANIFPALISILQTAE-FRTRK 336 (450)
T ss_dssp HHHHHHHTTCSSHHH----HHHHHHHHHHHTTSCHHH----------HHHHHH------TTHHHHHHHHHHHSC-HHHHH
T ss_pred HHHHHHHHcCCCHHH----HHHHHHHHHHHHcCCHHH----------HHHHHH------CCCHHHHHHHHhcCC-HHHHH
Confidence 443323333445554 578999999999875432 221111 257889999998765 89999
Q ss_pred HHHHHHHHHhcCCc-h-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC-------CCHHHHHHHHHCCCc
Q 041643 426 PAIRSIGCLAKTFP-A-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNF-------NRSEHSKAIIEFDGV 492 (576)
Q Consensus 426 ~a~~aLgnLa~~~~-~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~-------~~~~~~~~Iv~~ggi 492 (576)
.|+.+|+|++.... . .+.+++|+|+++|++.+.++++.|+++|.+++..+.. .-......+.+.||+
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999987532 1 1458999999999999999999999999999843210 001235688899999
Q ss_pred HhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 493 PPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 493 ~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
+.|..|+++++. ++..|..+|.++-
T Consensus 417 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 417 DKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999999988776 8888999888773
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=2.8e-22 Score=196.08 Aligned_cols=216 Identities=28% Similarity=0.325 Sum_probs=184.4
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE 282 (576)
Q Consensus 204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~ 282 (576)
|+||.|+++|++++ ++.|..|+++|.+|+.+. +++..+++.|++|.|+++|++++.+++..++++|++++.++++.++
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 68999999999999 999999999999999865 5899999999999999999999999999999999999998899999
Q ss_pred HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643 283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA 362 (576)
Q Consensus 283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~ 362 (576)
.+.+.|++++|+.+|+++ |++
T Consensus 81 ~~~~~~~i~~l~~ll~~~--------------------------------------------------------~~~--- 101 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST--------------------------------------------------------DSE--- 101 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS--------------------------------------------------------SHH---
T ss_pred HHHHCCCHHHHHHHHcCC--------------------------------------------------------CHH---
Confidence 999999999999999532 222
Q ss_pred HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE 442 (576)
Q Consensus 363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~ 442 (576)
++..|+++|++|+.++.+ .++ .+ .+
T Consensus 102 -v~~~a~~~L~~l~~~~~~----------~~~---------------~~-----------------------------~~ 126 (252)
T 4hxt_A 102 -VQKEAARALANIASGPDE----------AIK---------------AI-----------------------------VD 126 (252)
T ss_dssp -HHHHHHHHHHHHTTSCHH----------HHH---------------HH-----------------------------HH
T ss_pred -HHHHHHHHHHHHHcCCHH----------HHH---------------HH-----------------------------HH
Confidence 457899999999865321 110 01 12
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhccc-
Q 041643 443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA- 520 (576)
Q Consensus 443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~- 520 (576)
.+++|.|+++|++.+++++..|+|+|++++... ++.++.+++.|+++.|+++|.+++. ++..|+++|++++.+.
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 202 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGP----DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 467999999999999999999999999998642 6778899999999999999998877 9999999999998633
Q ss_pred CchHHHHhccchhhHhhh
Q 041643 521 GNSKALEQARALNALEGA 538 (576)
Q Consensus 521 ~~~~~l~~~~~l~~Le~~ 538 (576)
.....+.+.|+++.|..+
T Consensus 203 ~~~~~l~~~~~i~~L~~l 220 (252)
T 4hxt_A 203 SAIKAIVDAGGVEVLQKL 220 (252)
T ss_dssp HHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 345678899999998744
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=3.4e-22 Score=191.91 Aligned_cols=198 Identities=19% Similarity=0.219 Sum_probs=169.3
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH
Q 041643 202 EEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA 280 (576)
Q Consensus 202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~ 280 (576)
..|+.|+|++||++++ +..|..|+++|.+|+. +++++..+++.|++|.|+++|++++++++..|+++|++|+.++++.
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3678999999999988 9999999999999995 5678889999999999999999999999999999999999888999
Q ss_pred HHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHH
Q 041643 281 QEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEV 360 (576)
Q Consensus 281 r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~v 360 (576)
++.+.+.|+||+|+.+|+++ |+.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~--------------------------------------------------------~~~- 111 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP--------------------------------------------------------NEQ- 111 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS--------------------------------------------------------CHH-
T ss_pred HHHHHHCCCHHHHHHHHcCC--------------------------------------------------------cHH-
Confidence 99999999999999999532 222
Q ss_pred HHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch
Q 041643 361 KAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA 440 (576)
Q Consensus 361 k~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~ 440 (576)
++..|+++|++|+.++.++ ...+
T Consensus 112 ---v~~~a~~~L~~l~~~~~~~-------------------------~~~~----------------------------- 134 (210)
T 4db6_A 112 ---ILQEALWALSNIASGGNEQ-------------------------IQAV----------------------------- 134 (210)
T ss_dssp ---HHHHHHHHHHHHTTSCHHH-------------------------HHHH-----------------------------
T ss_pred ---HHHHHHHHHHHHHcCCHHH-------------------------HHHH-----------------------------
Confidence 4578999999998754210 0111
Q ss_pred hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643 441 KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL 518 (576)
Q Consensus 441 ~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal 518 (576)
.+.++||+|+++|++.+.++++.|+|+|+|++... ++.++.+.+.|+++.|++++.+++. ++..|+++|.+++.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13468999999999999999999999999998643 6888999999999999999998877 99999999998863
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=198.77 Aligned_cols=211 Identities=18% Similarity=0.168 Sum_probs=157.9
Q ss_pred CHHHHHHHHccCCCh--HHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q 041643 205 GILPLLKLLKEAASP--DAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ 281 (576)
Q Consensus 205 gIppLV~LL~~g~~~--~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r 281 (576)
.||+||++|++++ + ..|..|+++|.+|+. +++++..|+++|+||+||++|+++++++|+.|+|+|.||+.+++++|
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5999999999998 7 899999999999996 67899999999999999999999999999999999999998889999
Q ss_pred HHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643 282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK 361 (576)
Q Consensus 282 ~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk 361 (576)
..|.+.|+||+||++|++.. |+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~-------------------------------------------------------~~--- 109 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR-------------------------------------------------------DL--- 109 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC-------------------------------------------------------CH---
T ss_pred HHHHHcCCHHHHHHHHccCC-------------------------------------------------------CH---
Confidence 99999999999999996310 22
Q ss_pred HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643 362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK 441 (576)
Q Consensus 362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~ 441 (576)
++++.|+.|||+||.... .|.. ..++.++.|+.++.. |- ... ...
T Consensus 110 -~~~e~a~~aL~nLS~~~~-----------~k~~-------i~~~~i~~Lv~ll~~--------p~-------sG~-~~~ 154 (233)
T 3tt9_A 110 -ETKKQITGLLWNLSSNDK-----------LKNL-------MITEALLTLTENIII--------PF-------SGW-PEG 154 (233)
T ss_dssp -HHHHHHHHHHHHHHTSGG-----------GHHH-------HHHHHHHHHCCCCCH--------HH-------HCC-CGG
T ss_pred -HHHHHHHHHHHHHHcChh-----------hHHH-------HHhccHHHHHHHHhc--------cc-------cCC-ccc
Confidence 246889999999985421 1211 011223344322210 00 000 000
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCC-cHhHHHhhccC------hh-HHHHHHHHH
Q 041643 442 EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDG-VPPLMRLLKIS------DR-AQVHGLVFL 513 (576)
Q Consensus 442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~gg-i~~Lv~LL~~~------d~-vq~~A~~~L 513 (576)
+. -+.....+++++.+|+.+|.|+++.+ ++.|+.|.+.+| |+.|+.+|+.+ +. .+..++.+|
T Consensus 155 ~~------~~~~~~~~~~v~~na~~~L~nLss~~----~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L 224 (233)
T 3tt9_A 155 DY------PKANGLLDFDIFYNVTGCLRNMSSAG----ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224 (233)
T ss_dssp GC------CCCCTTCCHHHHHHHHHHHHHHTTSC----HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cc------ccccccchHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHH
Confidence 00 00001247799999999999999753 688999998755 79999999863 22 678899999
Q ss_pred HHHhcc
Q 041643 514 CYLALS 519 (576)
Q Consensus 514 ~~lal~ 519 (576)
.+|+..
T Consensus 225 ~nLs~~ 230 (233)
T 3tt9_A 225 HNLSYQ 230 (233)
T ss_dssp HHHCCC
T ss_pred HHHHhh
Confidence 998754
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.88 E-value=2.4e-21 Score=190.92 Aligned_cols=217 Identities=20% Similarity=0.269 Sum_probs=183.3
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q 041643 203 EGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ 281 (576)
Q Consensus 203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r 281 (576)
....++++++|++++ ++.|..|+++|.++.. +.++++.+++.|+||.|+++|++++.+++..|+++|++++.++++.+
T Consensus 11 ~~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 346999999999999 9999999999977655 67788899999999999999999999999999999999998889999
Q ss_pred HHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643 282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK 361 (576)
Q Consensus 282 ~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk 361 (576)
+.+.+.|+|++|+.+|+++ |++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~--------------------------------------------------------~~~-- 111 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSP--------------------------------------------------------NEQ-- 111 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCS--------------------------------------------------------CHH--
T ss_pred HHHHHcCCHHHHHHHHcCC--------------------------------------------------------CHH--
Confidence 9999999999999999642 222
Q ss_pred HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643 362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK 441 (576)
Q Consensus 362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~ 441 (576)
++..|+++|++|+.++.. + ...+ .
T Consensus 112 --v~~~a~~~L~~l~~~~~~-----------~--------------~~~~-----------------------------~ 135 (252)
T 4db8_A 112 --ILQEALWALSNIASGGNE-----------Q--------------IQAV-----------------------------I 135 (252)
T ss_dssp --HHHHHHHHHHHHTTSCHH-----------H--------------HHHH-----------------------------H
T ss_pred --HHHHHHHHHHHhhcCCch-----------H--------------HHHH-----------------------------H
Confidence 457899999999875311 1 0111 1
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhccc
Q 041643 442 EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA 520 (576)
Q Consensus 442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~ 520 (576)
+.++||+|+++|++.+.+++.+|+|+|++++... +++++.+++.|+++.|+++|.+++. ++..|+++|++++.+.
T Consensus 136 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC----hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 3467999999999999999999999999998643 6888899999999999999998877 9999999999998543
Q ss_pred -CchHHHHhccchhhHhhh
Q 041643 521 -GNSKALEQARALNALEGA 538 (576)
Q Consensus 521 -~~~~~l~~~~~l~~Le~~ 538 (576)
.....+.+.|+++.|..+
T Consensus 212 ~~~~~~~~~~g~i~~L~~l 230 (252)
T 4db8_A 212 NEQKQAVKEAGALEKLEQL 230 (252)
T ss_dssp HHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHCCcHHHHHHH
Confidence 345678899999998743
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=4.4e-22 Score=205.00 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHH-HHccCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCHHHH
Q 041643 174 GQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLK-LLKEAASPDAQTAAANALFNIATD-QETVRFIVDVLGVPII 251 (576)
Q Consensus 174 G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~-LL~~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gavp~L 251 (576)
++.+.|..|+..|.+|... .+|...+++.||+|+||. +|++++ +..|+.|+|+|+|++.+ ++.+..+++.|++|+|
T Consensus 52 ~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 52 ADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 3568999999999999874 678999999999999999 999988 99999999999999985 5678899999999999
Q ss_pred HHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccccccc
Q 041643 252 VSVLGE-APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKST 330 (576)
Q Consensus 252 V~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~ 330 (576)
+.+|++ ++..+++.|+|+|++|+.+++..++.|.+.|+||+|+.+|+++
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~------------------------------ 179 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ------------------------------ 179 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS------------------------------
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC------------------------------
Confidence 999986 4789999999999999988888888999999999999999643
Q ss_pred ccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHH
Q 041643 331 NVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQ 410 (576)
Q Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~ 410 (576)
|+. +|..|+|||++|+.++.+.+ +... -.++++.
T Consensus 180 --------------------------d~~----v~~~A~~aLs~L~~~~~~~~----------~~vv------~~g~i~~ 213 (296)
T 1xqr_A 180 --------------------------VQK----LKVKSAFLLQNLLVGHPEHK----------GTLC------SMGMVQQ 213 (296)
T ss_dssp --------------------------CHH----HHHHHHHHHHHHHHHCGGGH----------HHHH------HTTHHHH
T ss_pred --------------------------CHH----HHHHHHHHHHHHHhCChHHH----------HHHH------HcCCHHH
Confidence 222 46789999999998755432 2111 1257899
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643 411 LLRLIHEESDAMLQTPAIRSIGCLAKTFP 439 (576)
Q Consensus 411 Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~ 439 (576)
|+.+|.+.+ +.++++|+++|+||++..+
T Consensus 214 Lv~LL~~~d-~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 214 LVALVRTEH-SPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHTSCC-STHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCC-hhHHHHHHHHHHHHHhCCh
Confidence 999998765 8999999999999998754
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=4.7e-21 Score=183.88 Aligned_cols=132 Identities=17% Similarity=0.278 Sum_probs=124.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHc
Q 041643 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDV 245 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~ 245 (576)
++.+|++++.+.+..|+.+|.+|+..+++++..+++.|+||+|+++|++++ +..|+.|+++|+||+. +++++..+++.
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 478899999999999999999999877889999999999999999999998 9999999999999996 56788999999
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643 246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~ 299 (576)
|++|.|+++|++++..++..|+|+|+||+.++++.++.+.+.|+|++|+.+|++
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 149 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC
Confidence 999999999999999999999999999998888888899999999999999953
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.7e-20 Score=212.79 Aligned_cols=291 Identities=15% Similarity=0.136 Sum_probs=215.9
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcCcc--------------------------------------cHHHHHhc
Q 041643 163 WVWSFISTIQM-GQIKSRVDAANELASLARDNNR--------------------------------------NRKIIVEE 203 (576)
Q Consensus 163 ~v~~li~~L~~-G~~e~k~~AA~~L~~La~~~~~--------------------------------------~~~~I~~~ 203 (576)
++..++.++++ ++......++..|.||+...+. +++.|.+.
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 34555788884 5556677778888888763221 57788999
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChh---HHHHHHHHHHHHhc-CChH
Q 041643 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVK---VQVAVANLVARMAE-LDSI 279 (576)
Q Consensus 204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~---vq~~Aa~aL~~LA~-~~~~ 279 (576)
|+||+|+.++++++ +..|+.|+|+|.||+.++++|..++++||+++|+++|.+++.. .+..|+.+|++|+- .+|.
T Consensus 457 GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 457 ELISFLKREMHNLS-PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp THHHHHHHHGGGSC-HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999998 9999999999999999999999999999999999999988644 89999999999984 3343
Q ss_pred HHHHHHh---cCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccC
Q 041643 280 AQEEFVR---ENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELE 356 (576)
Q Consensus 280 ~r~~i~~---~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~ 356 (576)
. .|.. .|+||||+.||..++..+ + .+ . ..+
T Consensus 536 ~--~f~~~~~~~aI~pLv~LL~~~~~~~----------------------------------------~-~~--l--~~~ 568 (778)
T 3opb_A 536 L--IFKKYSALNAIPFLFELLPRSTPVD----------------------------------------D-NP--L--HND 568 (778)
T ss_dssp H--HSSSSCSTTHHHHHHHTSCCSSSCS----------------------------------------S-CC-------C
T ss_pred H--HcCCCccccchHHHHHHcCCCCCcc----------------------------------------c-cc--c--ccc
Confidence 2 3421 389999999997321000 0 00 0 001
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 041643 357 TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAK 436 (576)
Q Consensus 357 d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~ 436 (576)
|+-. ...+-.|+.||.|||..+... +.++|+..++. .++++.|..++.++ ++.++..|+.+|+||+.
T Consensus 569 ~~~~-~l~~feAL~ALTNLAs~~~n~------~E~~r~~Ii~~-----~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 569 EQIK-LTDNYEALLALTNLASSETSD------GEEVCKHIVST-----KVYWSTIENLMLDE-NVPLQRSTLELISNMMS 635 (778)
T ss_dssp CCCC-HHHHHHHHHHHHHHHHCCSHH------HHHHHHHHHHS-----HHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred cccc-HHHHHHHHHHHHHHhcCCccc------chHHHHHHHHh-----cCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence 1100 012457999999999764210 12455543321 26788899988765 48899999999999986
Q ss_pred CCchh-------h----hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHC-CCcHhHHHhhcc--C
Q 041643 437 TFPAK-------E----KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEF-DGVPPLMRLLKI--S 502 (576)
Q Consensus 437 ~~~~~-------~----~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~-ggi~~Lv~LL~~--~ 502 (576)
..... + .+.+++||.++++.+.++++.|+|||+++++.. +...+.|++. +|++.|+.+|+. +
T Consensus 636 ~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~----~~ia~~ll~~~~gi~~Ll~lL~~~~~ 711 (778)
T 3opb_A 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI----PLIAKELLTKKELIENAIQVFADQID 711 (778)
T ss_dssp SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC----HHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC----hHHHHHHHHccccHHHHHHHHhccCC
Confidence 44321 0 123889999999999999999999999997532 4667889988 899999999998 5
Q ss_pred hh-HHHHHHHHHHHHhc
Q 041643 503 DR-AQVHGLVFLCYLAL 518 (576)
Q Consensus 503 d~-vq~~A~~~L~~lal 518 (576)
+. +|..++.++++|+.
T Consensus 712 ~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 712 DIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55 89999999999985
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.9e-20 Score=206.89 Aligned_cols=327 Identities=14% Similarity=0.116 Sum_probs=242.2
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCC-HHHHHHHHcc-CCChHHHHHHHHHHHHhhcC
Q 041643 158 DPILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGG-ILPLLKLLKE-AASPDAQTAAANALFNIATD 235 (576)
Q Consensus 158 ~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~Gg-IppLV~LL~~-g~~~~~q~~AA~AL~nLa~~ 235 (576)
..+..++..++..|..++.+.+..|...|.+|+.+ ++-|+.+++..+ ++.|+++|++ ++ ......++..|.||+.+
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTL 407 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCC
Confidence 34555777778888888877799999999999886 667787775544 9999999996 56 78999999999999974
Q ss_pred Cc---------------------------------------hHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643 236 QE---------------------------------------TVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 236 ~~---------------------------------------~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
.+ ++..++++|+||+|+.+++++++.+|++++|+|.+|+.+
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32 356788999999999999999999999999999999965
Q ss_pred ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccC
Q 041643 277 DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELE 356 (576)
Q Consensus 277 ~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~ 356 (576)
+++|..+++.|++++|+.+|.+++. . +
T Consensus 488 -~~~R~~lvqqGal~~LL~lL~s~~~---------------------------------------------~-------~ 514 (778)
T 3opb_A 488 -KNFIPQLAQQGAVKIILEYLANKQD---------------------------------------------I-------G 514 (778)
T ss_dssp -GGGHHHHHHTTHHHHHHHHTTCC-------------------------------------------------------C
T ss_pred -HHHHHHHHHCCCHHHHHHHHhcCCC---------------------------------------------c-------c
Confidence 8999999999999999999976420 0 0
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCC-h------------hh
Q 041643 357 TPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESD-A------------ML 423 (576)
Q Consensus 357 d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~-~------------~l 423 (576)
+ ..|..|+.||.+|+..... .+ +|....+ .++|+.|+.+|..++. + ..
T Consensus 515 ~-----~~k~~AA~ALArLlis~np---------~~---~f~~~~~--~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~ 575 (778)
T 3opb_A 515 E-----PIRILGCRALTRMLIFTNP---------GL---IFKKYSA--LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTD 575 (778)
T ss_dssp C-----HHHHHHHHHHHHHHHTSCH---------HH---HSSSSCS--TTHHHHHHHTSCCSSSCSSCC---CCCCCHHH
T ss_pred h-----HHHHHHHHHHHHHHhcCCH---------HH---HcCCCcc--ccchHHHHHHcCCCCCcccccccccccccHHH
Confidence 1 1467899999999854321 11 2311111 2689999999973211 1 12
Q ss_pred HHHHHHHHHHHhcCCch-----h----h-hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHH-HHHHHC---
Q 041643 424 QTPAIRSIGCLAKTFPA-----K----E-KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHS-KAIIEF--- 489 (576)
Q Consensus 424 q~~a~~aLgnLa~~~~~-----~----~-~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~-~~Iv~~--- 489 (576)
+.+|++||.|||....+ + . .|++|.|+++|.+.+..|++.|+|+|+|+++. ++.+ +.+.+.
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-----~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-----PLTIAAKFFNLENP 650 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-----GGGTGGGTSCCSSH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-----cHHHHHHHHhhcCc
Confidence 67999999999986521 1 2 36899999999999999999999999999964 3433 233322
Q ss_pred ---CCcHhHHHhhccChh-HHHHHHHHHHHHh-cccCchHHHHhc-cchhhHhhhhcccCCCCCcHHHHHH---HHHHHH
Q 041643 490 ---DGVPPLMRLLKISDR-AQVHGLVFLCYLA-LSAGNSKALEQA-RALNALEGAARTVLPQHPELRDLFA---QAIYHL 560 (576)
Q Consensus 490 ---ggi~~Lv~LL~~~d~-vq~~A~~~L~~la-l~~~~~~~l~~~-~~l~~Le~~~~~~~~q~~~~~~l~~---~a~~~l 560 (576)
+++++||.|++.+|. +|..|.++|++++ .+......+.+. ++++.|.++-+. | ++.+++-. ..+..|
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~---~-~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD---Q-IDDIELRQRLLMLFFGL 726 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH---T-TTCHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc---c-CCCHHHHHHHHHHHHHH
Confidence 248899999998887 9999999999995 455666777776 677776533211 1 23445533 345555
Q ss_pred HhhcCCC
Q 041643 561 TLYQAGS 567 (576)
Q Consensus 561 ~~y~~~~ 567 (576)
..|.++.
T Consensus 727 ~~~~~~~ 733 (778)
T 3opb_A 727 FEVIPDN 733 (778)
T ss_dssp HTTCCST
T ss_pred HHhhccC
Confidence 5555533
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.44 E-value=9.9e-12 Score=124.49 Aligned_cols=250 Identities=16% Similarity=0.105 Sum_probs=176.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV 245 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~ 245 (576)
.++..|..++...|..|+..|..+.. .+.+++|+++|++.+ +..+..|+++|.++...++....
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~~~~---- 90 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCEDN---- 90 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccchH----
Confidence 34788999999999999999998751 246899999999888 99999999999999764433221
Q ss_pred CCHHHHHH-hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643 246 LGVPIIVS-VLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE 324 (576)
Q Consensus 246 Gavp~LV~-lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~ 324 (576)
.++.|.+ ++++++..++..++++|+++...++.... .+++.|+.+|.+
T Consensus 91 -l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d------------------------- 139 (280)
T 1oyz_A 91 -VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFD------------------------- 139 (280)
T ss_dssp -HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC-------------------------
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhC-------------------------
Confidence 3344543 45778899999999999999854432221 245667666632
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643 325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA 404 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~ 404 (576)
+|+.| +..|+++|.++...
T Consensus 140 -------------------------------~~~~v----R~~a~~aL~~~~~~-------------------------- 158 (280)
T 1oyz_A 140 -------------------------------KSTNV----RRATAFAISVINDK-------------------------- 158 (280)
T ss_dssp -------------------------------SCHHH----HHHHHHHHHTC-----------------------------
T ss_pred -------------------------------CCHHH----HHHHHHHHHhcCCH--------------------------
Confidence 24444 46788888766321
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
..++.|+.++.+.+ +.++..|+.+||++... ...++++|+.+|++.++.|+.+|+++|+++..
T Consensus 159 -~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 159 -ATIPLLINLLKDPN-GDVRNWAAFAININKYD----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp -CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred -HHHHHHHHHHcCCC-HHHHHHHHHHHHhhccC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence 13677788887654 78999999999998522 23578999999999999999999999998852
Q ss_pred HHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHHH
Q 041643 485 AIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYHL 560 (576)
Q Consensus 485 ~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l 560 (576)
...++.|+.+|...+ ++..|+.+|..+. + ...++.|.... +++...++..+++..|
T Consensus 222 ----~~~~~~L~~~l~d~~-vr~~a~~aL~~i~----~------~~~~~~L~~~l-----~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 ----KRVLSVLCDELKKNT-VYDDIIEAAGELG----D------KTLLPVLDTML-----YKFDDNEIITSAIDKL 277 (280)
T ss_dssp ----GGGHHHHHHHHTSSS-CCHHHHHHHHHHC----C------GGGHHHHHHHH-----TTSSCCHHHHHHHHHH
T ss_pred ----HhhHHHHHHHhcCcc-HHHHHHHHHHhcC----c------hhhhHHHHHHH-----hcCCCcHHHHHHHHHh
Confidence 247888899997654 7777888887773 2 25667776322 2233345555555544
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.36 E-value=2.2e-11 Score=121.93 Aligned_cols=201 Identities=15% Similarity=0.117 Sum_probs=152.0
Q ss_pred HHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH
Q 041643 200 IVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 200 I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
+.+.+.++.|+++|++++ +..+..|+++|+++.. .++++.|+++|.+++..++..|+++|+.+....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-- 85 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-- 85 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--
Confidence 445678999999999888 9999999999999872 247899999999999999999999999887432
Q ss_pred HHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHH
Q 041643 280 AQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPE 359 (576)
Q Consensus 280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~ 359 (576)
..++.++.+|... ....+|+.
T Consensus 86 --------~~~~~l~~~L~~~---------------------------------------------------~~~d~~~~ 106 (280)
T 1oyz_A 86 --------KCEDNVFNILNNM---------------------------------------------------ALNDKSAC 106 (280)
T ss_dssp --------TTHHHHHHHHHHH---------------------------------------------------HHHCSCHH
T ss_pred --------ccchHHHHHHHHH---------------------------------------------------HhcCCCHH
Confidence 1244555555210 00012444
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643 360 VKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP 439 (576)
Q Consensus 360 vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~ 439 (576)
| +..|+++|.++..++.. ....+++.|+..+.+.+ +.++..|+.+||++..
T Consensus 107 v----r~~a~~aL~~l~~~~~~---------------------~~~~~~~~L~~~l~d~~-~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 107 V----RATAIESTAQRCKKNPI---------------------YSPKIVEQSQITAFDKS-TNVRRATAFAISVIND--- 157 (280)
T ss_dssp H----HHHHHHHHHHHHHHCGG---------------------GHHHHHHHHHHHTTCSC-HHHHHHHHHHHHTC-----
T ss_pred H----HHHHHHHHHHHhccCCc---------------------ccHHHHHHHHHHhhCCC-HHHHHHHHHHHHhcCC---
Confidence 4 57899999988643211 11256888999898755 8999999999998852
Q ss_pred hhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 440 AKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 440 ~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
...+|+|+.+|++.+..|+..|+|+|+++.... + ..++.|+.+|..++. ++..|+.+|..+.
T Consensus 158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ---KATIPLLINLLKDPNGDVRNWAAFAININKYDN----S---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC----H---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc----H---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999985321 1 245789999988777 8999999998773
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.35 E-value=1.6e-11 Score=117.77 Aligned_cols=187 Identities=20% Similarity=0.214 Sum_probs=147.8
Q ss_pred cCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643 203 EGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE 282 (576)
Q Consensus 203 ~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~ 282 (576)
.+.++.|+++|++++ +..+..|+++|..+.. .++++.|+++|.+++..++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 457999999999888 9999999999998754 3689999999999999999999999998863
Q ss_pred HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643 283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA 362 (576)
Q Consensus 283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~ 362 (576)
.++++.|+.+|.+ +|+.+
T Consensus 80 ----~~~~~~L~~~l~~--------------------------------------------------------~~~~v-- 97 (211)
T 3ltm_A 80 ----ERAVEPLIKALKD--------------------------------------------------------EDGWV-- 97 (211)
T ss_dssp ----GGGHHHHHHHTTC--------------------------------------------------------SSHHH--
T ss_pred ----HHHHHHHHHHHcC--------------------------------------------------------CCHHH--
Confidence 2467888888742 13443
Q ss_pred HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh
Q 041643 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE 442 (576)
Q Consensus 363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~ 442 (576)
+..|+++|..+... ..++.|+.++.+.+ +.++..|+.+||++. +
T Consensus 98 --r~~a~~aL~~~~~~---------------------------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------~ 141 (211)
T 3ltm_A 98 --RQSAAVALGQIGDE---------------------------RAVEPLIKALKDED-WFVRIAAAFALGEIG------D 141 (211)
T ss_dssp --HHHHHHHHHHHCCG---------------------------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------C
T ss_pred --HHHHHHHHHHhCcH---------------------------HHHHHHHHHHhCCC-HHHHHHHHHHHHHcC------C
Confidence 46788888877421 13677888887654 889999999999994 2
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhccc
Q 041643 443 KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSA 520 (576)
Q Consensus 443 ~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~ 520 (576)
...++.|+.+|++.++.|+..|+++|+++.. ...++.|.++++.++. ++..|..+|+.+..+.
T Consensus 142 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 4579999999999999999999999999952 1256778899988777 8999999998885443
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.35 E-value=6.3e-11 Score=131.80 Aligned_cols=288 Identities=17% Similarity=0.199 Sum_probs=213.4
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccC-CChHHHHHHHHHHHHhhcCCc---
Q 041643 163 WVWSFISTIQMGQ-IKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEA-ASPDAQTAAANALFNIATDQE--- 237 (576)
Q Consensus 163 ~v~~li~~L~~G~-~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g-~~~~~q~~AA~AL~nLa~~~~--- 237 (576)
.|..+..+|++++ .+.|..|...|.++++ +|+..++ ++|+|+|+..|+.+ .+.+.-+.+..+|.++-...+
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk---~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTT---TTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHH---HhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 4556689999985 7999999999999975 4777776 67999999999876 336677778889988776321
Q ss_pred ---------------hHHH-HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChH-HHHHHHhc-CCchhHHHhhcc
Q 041643 238 ---------------TVRF-IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSI-AQEEFVRE-NVTRSLISLLCM 299 (576)
Q Consensus 238 ---------------~~~~-iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~-~r~~i~~~-g~I~~LV~LL~~ 299 (576)
+.+. +-+.+.|+.|+++|++.+..++..+...|..|+.+.++ .|+.|... ++|+.||.+|..
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 1222 34678899999999999999999999999999988777 89888855 999999999953
Q ss_pred ccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC
Q 041643 300 DIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC 379 (576)
Q Consensus 300 ~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~ 379 (576)
.. + .++-.+...|.+|+.+|
T Consensus 178 ~r---------------------------------------------------------E---~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 178 SR---------------------------------------------------------E---VIRNDGVLLLQALTRSN 197 (651)
T ss_dssp SS---------------------------------------------------------H---HHHHHHHHHHHHHHTTC
T ss_pred ch---------------------------------------------------------H---HHHHHHHHHHHHHhcCC
Confidence 20 0 14567889999999886
Q ss_pred cccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC---ChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHH
Q 041643 380 LLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES---DAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVA 451 (576)
Q Consensus 380 ~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~---~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~ 451 (576)
. ++++-. +-.+..+.|+.+++.+. ...+..-|+..|.||.+..+. ++++.||.|..
T Consensus 198 ~----------~iQklV------AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~ 261 (651)
T 3grl_A 198 G----------AIQKIV------AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKP 261 (651)
T ss_dssp H----------HHHHHH------HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGG
T ss_pred H----------HHHHHH------HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 4 444411 22367899999998654 125677899999999987643 46789999999
Q ss_pred hhcCCCHH------HHHH---HHHHHHhhcCCCCCC--CHHHHHHHHHCCCcHhHHHhhccCh--h-HHHHHHHHHHHHh
Q 041643 452 LLSNRNVD------VATE---AVIALSKFVSPDNFN--RSEHSKAIIEFDGVPPLMRLLKISD--R-AQVHGLVFLCYLA 517 (576)
Q Consensus 452 LL~~~~~~------V~~e---Aa~AL~nla~~~n~~--~~~~~~~Iv~~ggi~~Lv~LL~~~d--~-vq~~A~~~L~~la 517 (576)
+|..+++. ...+ +-..+.-+.++++.. +..+++++.+.|++++|++++.+.. . ++..|+.+++.+.
T Consensus 262 LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~i 341 (651)
T 3grl_A 262 WFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVI 341 (651)
T ss_dssp GGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 99754321 2333 333444455655431 3578999999999999999997652 2 7778888888776
Q ss_pred c-ccCchHHHHhcc
Q 041643 518 L-SAGNSKALEQAR 530 (576)
Q Consensus 518 l-~~~~~~~l~~~~ 530 (576)
. |..+++.+++..
T Consensus 342 rgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 342 RGCQVNQDYFASVN 355 (651)
T ss_dssp TTCHHHHHHHHHCE
T ss_pred hCCHHHHHHHhhcc
Confidence 4 555577777643
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=5.5e-11 Score=113.15 Aligned_cols=184 Identities=21% Similarity=0.240 Sum_probs=147.8
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q 041643 202 EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ 281 (576)
Q Consensus 202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r 281 (576)
..+..+.++++|++++ +..+..|+++|..+.. .++++.|+++|.+++..++..|+++|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 3567899999999999 9999999999998764 3579999999999999999999999998863
Q ss_pred HHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHH
Q 041643 282 EEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVK 361 (576)
Q Consensus 282 ~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk 361 (576)
..+++.|+.+|.. +|+.+
T Consensus 75 -----~~~~~~L~~~l~d--------------------------------------------------------~~~~v- 92 (201)
T 3ltj_A 75 -----ERAVEPLIKALKD--------------------------------------------------------EDGWV- 92 (201)
T ss_dssp -----GGGHHHHHHHTTC--------------------------------------------------------SSHHH-
T ss_pred -----HHHHHHHHHHHcC--------------------------------------------------------CCHHH-
Confidence 1467888888742 13443
Q ss_pred HHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643 362 AKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK 441 (576)
Q Consensus 362 ~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~ 441 (576)
+..|+++|..+... ..++.|+.++.+.+ +.++..|+.+||++.
T Consensus 93 ---r~~a~~aL~~~~~~---------------------------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------ 135 (201)
T 3ltj_A 93 ---RQSAAVALGQIGDE---------------------------RAVEPLIKALKDED-WFVRIAAAFALGEIG------ 135 (201)
T ss_dssp ---HHHHHHHHHHHCCG---------------------------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHT------
T ss_pred ---HHHHHHHHHHhCcH---------------------------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------
Confidence 46788888877321 13677788887654 889999999999995
Q ss_pred hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHH
Q 041643 442 EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYL 516 (576)
Q Consensus 442 ~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~l 516 (576)
+...++.|+.+|++.++.|+..|+++|+++.. + ..++.|.+++..++. ++..|..+|..+
T Consensus 136 ~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 136 DERAVEPLIKALKDEDGWVRQSAADALGEIGG------E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 24689999999999999999999999999942 1 256788899987777 888899988766
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.27 E-value=4.4e-09 Score=117.09 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=200.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcc-cHHHHHhc-CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNR-NRKIIVEE-GGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF 241 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~-~~~~I~~~-GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~ 241 (576)
|--++.+|++.+...|..+...|..|+..++. ++++|... ||||.||.+|++.. +..|.+|...|.+|+.+..+.+.
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQk 202 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQK 202 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 33458899999999999999999999987766 89999966 89999999999888 99999999999999997666555
Q ss_pred HH-HcCCHHHHHHhhcCCC----hhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHH
Q 041643 242 IV-DVLGVPIIVSVLGEAP----VKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIH 316 (576)
Q Consensus 242 iv-~~Gavp~LV~lL~s~~----~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~ 316 (576)
+| -+||++.|++++.+.. ..+.+.+...|.||...++.+|..|.+.|.|+.|..+|..+.. ...++ .. .+.
T Consensus 203 lVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~-~~~W~-~Q--k~~ 278 (651)
T 3grl_A 203 IVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE-NSGWS-AQ--KVT 278 (651)
T ss_dssp HHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC-SSCCC-HH--HHH
T ss_pred HHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc-ccccH-HH--HHH
Confidence 55 5799999999996532 3678889999999999999999999999999999999975421 10110 00 000
Q ss_pred HHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhh
Q 041643 317 SLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSA 396 (576)
Q Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a 396 (576)
+ ...+...+.-|..++... ......++ +
T Consensus 279 N-----------------------------------------------~~~~L~iIrlLv~~~~~~----~~t~~nQ~-~ 306 (651)
T 3grl_A 279 N-----------------------------------------------LHLMLQLVRVLVSPNNPP----GATSSCQK-A 306 (651)
T ss_dssp H-----------------------------------------------HHHHHHHHHHHTCTTSCH----HHHHHHHH-H
T ss_pred H-----------------------------------------------HHHHHHHHHHHhCCCCCC----CCCHHHHH-H
Confidence 0 001222333333221110 00001111 1
Q ss_pred hccCchhHHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHhcCCchhhhC----------cHHHHHHh----hcC-CCHHH
Q 041643 397 FKTNSPAAKAVLDQLLRLIHEES-DAMLQTPAIRSIGCLAKTFPAKEKR----------MIGPLVAL----LSN-RNVDV 460 (576)
Q Consensus 397 ~k~~s~a~~~vV~~Ll~lL~~~~-~~~lq~~a~~aLgnLa~~~~~~~~~----------~I~~LV~L----L~~-~~~~V 460 (576)
|. -.++++.|++++.... ...++..|+.++|.+.+..+..+.. ..|.++.+ +.+ ..+++
T Consensus 307 ~~-----~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~l 381 (651)
T 3grl_A 307 MF-----QCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVL 381 (651)
T ss_dssp HH-----HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHH
T ss_pred HH-----HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHH
Confidence 11 1257788899887542 3578899999999999876543221 12445554 433 46888
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHC------C----CcH---hHHHhhccChhHHH-HHHHHHHHHhcccCchHHH
Q 041643 461 ATEAVIALSKFVSPDNFNRSEHSKAIIEF------D----GVP---PLMRLLKISDRAQV-HGLVFLCYLALSAGNSKAL 526 (576)
Q Consensus 461 ~~eAa~AL~nla~~~n~~~~~~~~~Iv~~------g----gi~---~Lv~LL~~~d~vq~-~A~~~L~~lal~~~~~~~l 526 (576)
+..|+.++..+..+ | .+-+..|+.. + .+. .|+.-|-+.|+.+. -|+.++.++..+.+..++.
T Consensus 382 R~Aa~~cl~ay~~~-N---~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~ 457 (651)
T 3grl_A 382 RCAVLYCFQCFLYK-N---QKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQ 457 (651)
T ss_dssp HHHHHHHHHHHHTT-C---HHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC-C---HHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98899999888753 2 5666677753 1 122 24444445566443 3777788887666555543
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.26 E-value=1.9e-10 Score=110.24 Aligned_cols=184 Identities=24% Similarity=0.252 Sum_probs=146.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
+..++..|+.++...|..|+..|..+.. .+++|.|+++|++++ +..+..|+++|+++..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC---------
Confidence 3445788999999999999999987632 357999999999888 9999999999999863
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~ 323 (576)
.++++.|+++|.+++..++..|+++|+.+.. .++++.|+.+|..
T Consensus 80 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d------------------------ 123 (211)
T 3ltm_A 80 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD------------------------ 123 (211)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC------------------------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC------------------------
Confidence 3578999999999999999999999999863 2467888888742
Q ss_pred cccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchh
Q 041643 324 EMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPA 403 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a 403 (576)
+|+. ++..|+++|..+...
T Consensus 124 --------------------------------~~~~----vr~~a~~aL~~~~~~------------------------- 142 (211)
T 3ltm_A 124 --------------------------------EDWF----VRIAAAFALGEIGDE------------------------- 142 (211)
T ss_dssp --------------------------------SSHH----HHHHHHHHHHHHCCG-------------------------
T ss_pred --------------------------------CCHH----HHHHHHHHHHHcCCH-------------------------
Confidence 1343 356789999887321
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643 404 AKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSP 474 (576)
Q Consensus 404 ~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~ 474 (576)
..++.|++++.+.+ +.++..|+.+|+.+. ...+++.|..+|++.++.|+..|.++|.++...
T Consensus 143 --~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 143 --RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp --GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 13677888887654 889999999999994 246799999999999999999999999999743
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.26 E-value=1.9e-10 Score=109.36 Aligned_cols=181 Identities=24% Similarity=0.252 Sum_probs=147.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD 244 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~ 244 (576)
-.+++.|++++...|..|+..|..+.. .+.++.|+++|++++ +..+..|+++|+.+..
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~---------- 74 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD---------- 74 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC----------
Confidence 345899999999999999999987642 257899999999888 9999999999998853
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcc
Q 041643 245 VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKE 324 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~ 324 (576)
..+++.|+++|.++++.++..|+++|+++.. ..+++.|+.+|..
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d------------------------- 118 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD------------------------- 118 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcC-------------------------
Confidence 2578999999999999999999999999863 1357778887732
Q ss_pred ccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhH
Q 041643 325 MTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAA 404 (576)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~ 404 (576)
+|+. ++..|+++|..+...
T Consensus 119 -------------------------------~~~~----vr~~a~~aL~~~~~~-------------------------- 137 (201)
T 3ltj_A 119 -------------------------------EDWF----VRIAAAFALGEIGDE-------------------------- 137 (201)
T ss_dssp -------------------------------SSHH----HHHHHHHHHHHHTCG--------------------------
T ss_pred -------------------------------CCHH----HHHHHHHHHHHhCCH--------------------------
Confidence 1343 356788998877421
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
..++.|+.++.+.+ +.++..|+.+|+++. ...+++.|..+|++.++.|+..|.++|.++.
T Consensus 138 -~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 -RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 23677888887654 889999999999994 3457999999999999999999999999884
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.07 E-value=6.2e-09 Score=116.17 Aligned_cols=280 Identities=17% Similarity=0.197 Sum_probs=162.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-h
Q 041643 160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-T 238 (576)
Q Consensus 160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~ 238 (576)
...++-.+...|...++..|..|+.+|..+...+++ .+.+.|.+|.|.++|.+.+ +.++.+|+++|..++.+.. .
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCc
Confidence 344555567888888999999999999999886543 3444577999999998877 9999999999999998532 1
Q ss_pred ---------HHHHHH----------------------------cCCHHHHHHhhcCCChhHHHHHHHHHHHHhc---CCh
Q 041643 239 ---------VRFIVD----------------------------VLGVPIIVSVLGEAPVKVQVAVANLVARMAE---LDS 278 (576)
Q Consensus 239 ---------~~~iv~----------------------------~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~---~~~ 278 (576)
-..++. ...++.+..+|++.+..++..|++++.++.. .++
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~ 274 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDS 274 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTT
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCH
Confidence 112221 2356667777888888999999999999874 233
Q ss_pred HHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCH
Q 041643 279 IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETP 358 (576)
Q Consensus 279 ~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~ 358 (576)
+.-..+. ..++++|+.+++++. .-+ ...-.++..++...... +... +..+ -....+|.
T Consensus 275 ~~~~~~~-~~~~~~L~~L~~~d~---~vr-~~aL~~l~~i~~~~p~~-------------~~~~---~~~~-~~~~~d~~ 332 (591)
T 2vgl_B 275 DYYNMLL-KKLAPPLVTLLSGEP---EVQ-YVALRNINLIVQKRPEI-------------LKQE---IKVF-FVKYNDPI 332 (591)
T ss_dssp BSHHHHH-HHTHHHHHHHTTSCH---HHH-HHHHHHHHHHHHHCCST-------------TTTC---TTTT-SCCTTSCH
T ss_pred HHHHHHH-HHHHHHHHHHhcCCc---cHH-HHHHHHHHHHHHhChHH-------------HHHH---HHhh-eeccCChH
Confidence 3322222 345688998875321 000 11111222222211000 0000 0000 11122334
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccc---------hhcccchHHHHhhhc-------cCchhHHHHHHHHHHHhhhcCChh
Q 041643 359 EVKAKVRIACAEALWKLSKGCLLSL---------WSAESNAELRRSAFK-------TNSPAAKAVLDQLLRLIHEESDAM 422 (576)
Q Consensus 359 ~vk~~~k~~Aa~ALw~La~g~~~~I---------avae~~~~lrr~a~k-------~~s~a~~~vV~~Ll~lL~~~~~~~ 422 (576)
. +|..|.+.|.+++.. .|+ .+-+.+.++|+.+.. ...+.....++.|+.+++... +.
T Consensus 333 ~----Ir~~al~~L~~l~~~--~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~-~~ 405 (591)
T 2vgl_B 333 Y----VKLEKLDIMIRLASQ--ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-NY 405 (591)
T ss_dssp H----HHHHHHHHHHHTCCS--STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC-HH
T ss_pred H----HHHHHHHHHHHHCCh--hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccc-hH
Confidence 3 457788888888643 332 112234445554321 112233555566666665543 44
Q ss_pred hHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc-CCCHHHHHHHHHHHHhhc
Q 041643 423 LQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS-NRNVDVATEAVIALSKFV 472 (576)
Q Consensus 423 lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~-~~~~~V~~eAa~AL~nla 472 (576)
+...++.+++++.+..++....+++.|.+.|. ..+++++..++|.|+.++
T Consensus 406 v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~ 456 (591)
T 2vgl_B 406 VVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYA 456 (591)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Confidence 55555666666665555444456666666664 345566666666666664
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.04 E-value=4.5e-09 Score=121.57 Aligned_cols=319 Identities=12% Similarity=0.061 Sum_probs=189.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHH-H---HhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKI-I---VEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET 238 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~-I---~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~ 238 (576)
++-.++..+++++...|..|..+|..++...++.... . .-.+.+|+|+++|++.+ +.++..|+++|.++......
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccH
Confidence 4556688899999999999999999988653321110 0 01235889999998877 99999999999988764332
Q ss_pred HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHH
Q 041643 239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSL 318 (576)
Q Consensus 239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~ 318 (576)
...-.-.+.++.+.+++.+++.+++..++++|..++...++.-.... .+.++.++.++.... . .+...++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~----~--~vr~~a~e~l 280 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD----E--NVALEACEFW 280 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS----H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc----H--HHHHHHHHHH
Confidence 11111124678899999999999999999999999986654311111 135666666665321 1 1111111111
Q ss_pred HhhhccccccccccCCCCCCCCCCCCCCCCcc-cc-----------ccc-CCHH-----HHHHHHHHHHHHHHHhhcCCc
Q 041643 319 VQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNK-KD-----------REL-ETPE-----VKAKVRIACAEALWKLSKGCL 380 (576)
Q Consensus 319 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~-----------~e~-~d~~-----vk~~~k~~Aa~ALw~La~g~~ 380 (576)
........ ..+.. .+.+.. -++.+. .. .+. +|++ ....++..|+.+|..|+....
T Consensus 281 ~~l~~~~~-~~~~~---~~~~~~---l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~ 353 (852)
T 4fdd_A 281 LTLAEQPI-CKDVL---VRHLPK---LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353 (852)
T ss_dssp HHHTTSTT-HHHHH---TTTHHH---HHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHhcchh-HHHHH---HHHHHH---HHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence 11100000 00000 000000 000000 00 010 1110 001235677888887764311
Q ss_pred ccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCC
Q 041643 381 LSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNR 456 (576)
Q Consensus 381 ~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~ 456 (576)
+ + ....+++.|..++.+.+ ..++..|+.++|+++...... -..++|.|+.+|++.
T Consensus 354 ~---------~-----------~~~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~ 412 (852)
T 4fdd_A 354 D---------E-----------LLPHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK 412 (852)
T ss_dssp G---------G-----------GHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS
T ss_pred H---------H-----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 1 0 12346777777777654 889999999999999755421 135789999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643 457 NVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG 521 (576)
Q Consensus 457 ~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~ 521 (576)
++.|+..|+|+|++++..-.. ..+..++ .+.++.|++.|..++. +|..|+++|.+++.+.+
T Consensus 413 ~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 413 KALVRSITCWTLSRYAHWVVS--QPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp SHHHHHHHHHHHHHTHHHHHH--SCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHhcc--chHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999741000 0000111 2456778888876666 99999999999875544
No 49
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.01 E-value=5e-09 Score=119.21 Aligned_cols=97 Identities=23% Similarity=0.262 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHH-HHhhcCCChhHHHHHHHHHHHHhcC-ChH
Q 041643 202 EEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPII-VSVLGEAPVKVQVAVANLVARMAEL-DSI 279 (576)
Q Consensus 202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~L-V~lL~s~~~~vq~~Aa~aL~~LA~~-~~~ 279 (576)
....|.|+++.|++++ +..|..|++||.||+.++..++.+...|+|+++ ..+|.+.+.++++.|+++|.||+.+ +++
T Consensus 32 ~~~~i~Pll~~L~S~~-~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 32 REDKILPVLKDLKSPD-AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHTTHHHHHHHSSSC-CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 3457889999999998 999999999999999999999999999998875 5578888999999999999999965 467
Q ss_pred HHHHHHhcCCchhHHHhhcc
Q 041643 280 AQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 280 ~r~~i~~~g~I~~LV~LL~~ 299 (576)
..+.+.+.|++++|..+|+.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~ 130 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKA 130 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHh
Confidence 88899999999999999964
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.93 E-value=6.8e-08 Score=105.28 Aligned_cols=299 Identities=13% Similarity=0.147 Sum_probs=199.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCccc-HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRN-RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI 242 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~-~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i 242 (576)
+..++..++..+.+.|..|+.+|..++..-... +....-...+|.+.+++++.+ +..+..++++|..++..-... .
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~~--~ 359 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGKD--N 359 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCHH--H
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhHh--H
Confidence 444567788888899999999999888642211 111222346788999998888 999999999999998632111 1
Q ss_pred HHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhh
Q 041643 243 VDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMK 322 (576)
Q Consensus 243 v~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~ 322 (576)
.....+|.|..+|++.+.+++..++.+++.+....... . .....+|.|+.++..
T Consensus 360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~-~~~~~lp~l~~~~~d----------------------- 413 (588)
T 1b3u_A 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q-LSQSLLPAIVELAED----------------------- 413 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H-HHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHHhcC-----------------------
Confidence 22347899999999998999999999998887532111 1 112344555544421
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643 323 KEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402 (576)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~ 402 (576)
.+.. ++..++.+|..++..- +.+ .|
T Consensus 414 ---------------------------------~~~~----vr~~~~~~l~~l~~~~---------~~~----~~----- 438 (588)
T 1b3u_A 414 ---------------------------------AKWR----VRLAIIEYMPLLAGQL---------GVE----FF----- 438 (588)
T ss_dssp ---------------------------------SSHH----HHHHHHHHHHHHHHHH---------CGG----GC-----
T ss_pred ---------------------------------CCch----HHHHHHHHHHHHHHHc---------CHH----HH-----
Confidence 1122 3467888888876420 000 11
Q ss_pred hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh--hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCH
Q 041643 403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK--EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRS 480 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~--~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~ 480 (576)
...+++.+++++.+.+ ..++..|+.+++.++..+... ...++|.|+.++++.+..++..++++++.++..
T Consensus 439 -~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~------ 510 (588)
T 1b3u_A 439 -DEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------ 510 (588)
T ss_dssp -CHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------
T ss_pred -HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh------
Confidence 1246788888887654 789999999999998765432 236789999999999999999999999999731
Q ss_pred HHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHhhhhcccCCCCCcHHHHHHHHHHH
Q 041643 481 EHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALEGAARTVLPQHPELRDLFAQAIYH 559 (576)
Q Consensus 481 ~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~ 559 (576)
......-...++.|+++++..+. ++..++.+++.+....+.. .....+++.|+.+.. =.+++.+....+|+..
T Consensus 511 -~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~---d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 511 -CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQ---DQDVDVKYFAQEALTV 584 (588)
T ss_dssp -HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcC---CCchhHHHHHHHHHHH
Confidence 11112233578899999987766 8999999999997655432 233455666654311 1234555666666655
Q ss_pred H
Q 041643 560 L 560 (576)
Q Consensus 560 l 560 (576)
+
T Consensus 585 l 585 (588)
T 1b3u_A 585 L 585 (588)
T ss_dssp T
T ss_pred h
Confidence 4
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.87 E-value=1.2e-07 Score=103.23 Aligned_cols=125 Identities=17% Similarity=0.131 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHc
Q 041643 166 SFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDV 245 (576)
Q Consensus 166 ~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~ 245 (576)
.+...++..+.+.|..|+..|..++..-.. . ......+|.|..++.+++ +..+..|+.+|..++..-... ....
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~ 241 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLEL--D-NVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--DLEA 241 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--H-HHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--HHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--H-hHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--HHHH
Confidence 334567778899999999999999865321 1 223456889999998887 899999999999998742211 1234
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643 246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~ 299 (576)
..+|.+..++++.+..++..++.+|+.++...+. .......++.++.++..
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d 292 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKD 292 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCC
Confidence 4788899999888889999999999999853111 11234567888888864
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.85 E-value=3e-08 Score=114.70 Aligned_cols=355 Identities=12% Similarity=0.012 Sum_probs=198.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCc-hHHH
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQE-TVRF 241 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-~~~~ 241 (576)
++-.+...+++.+...|..|+.+|++++....+.... .-.+.+|.|+++|++.+ +.++..|+|+|++++..-. ....
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhccchHH
Confidence 4444566788889999999999999998754322111 22457899999998888 9999999999999997321 1111
Q ss_pred HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcch-hhhhHHHHHHh
Q 041643 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPE-SAKTTIHSLVQ 320 (576)
Q Consensus 242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i-~~~~si~~~v~ 320 (576)
..-.+.++.|++.|.+.+..++..|+++|.+++......-... -.+.++.|+.+++... .+.. ..-.++..+..
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~-l~~ll~~L~~~l~~~~----~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY-LAYILDTLVFAFSKYQ----HKNLLILYDAIGTLAD 512 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH-HHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHH
Confidence 1123578899999988889999999999999985422110001 1245566666664321 0100 00112222221
Q ss_pred hhccccccccccCCCCCCCCCCCCCCCCcc---cccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643 321 MKKEMTEKSTNVTNNSDGSSRGGHGQHYNK---KDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF 397 (576)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~ 397 (576)
...... . .+.+... -++.+. ......|++++ .+..++..++.. +.. .|
T Consensus 513 ~~~~~~---~-----~~~~~~~--l~p~l~~~~~~l~d~~~~~~-----~~~~~l~~i~~~-------------~g~-~~ 563 (852)
T 4fdd_A 513 SVGHHL---N-----KPEYIQM--LMPPLIQKWNMLKDEDKDLF-----PLLECLSSVATA-------------LQS-GF 563 (852)
T ss_dssp HHGGGG---C-----CHHHHHH--HHHHHHHHHHHSCTTCTTHH-----HHHHHHHHHHHH-------------HGG-GG
T ss_pred Hhhhhh---c-----cHHHHHH--HHHHHHHHHHhcccccHHHH-----HHHHHHHHHHHH-------------HhH-hH
Confidence 111000 0 0000000 000000 00001223221 345555554431 000 12
Q ss_pred ccCchhHHHHHHHHHHHhhh----------------cCChhhHHHHHHHHHHHhcCCchh------hhCcHHHHHHhhcC
Q 041643 398 KTNSPAAKAVLDQLLRLIHE----------------ESDAMLQTPAIRSIGCLAKTFPAK------EKRMIGPLVALLSN 455 (576)
Q Consensus 398 k~~s~a~~~vV~~Ll~lL~~----------------~~~~~lq~~a~~aLgnLa~~~~~~------~~~~I~~LV~LL~~ 455 (576)
. |....+++.++.+++. .++.+++..++.+||.+++..... +.++++.++..|.+
T Consensus 564 ~---~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 640 (852)
T 4fdd_A 564 L---PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 640 (852)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC
Confidence 1 1222344444444432 113567889999999999755321 24678999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCch-HHHHhccchh
Q 041643 456 RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNS-KALEQARALN 533 (576)
Q Consensus 456 ~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~-~~l~~~~~l~ 533 (576)
.+.+|++.|.++++.++..- ..+-..++-+ .+|.|++.|..++. ++..|+++++.++.+.+.. .... ..+++
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~---~~~~~~~l~~--~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~-~~il~ 714 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKAC---FQHVKPCIAD--FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLH 714 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHC---GGGTGGGHHH--HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT-HHHHH
T ss_pred CChhHHHHHHHHHHHHHHHh---hHHHHHHHHH--HHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHH
Confidence 99999999999999987311 1122233332 56788888866555 7788999999998766542 1111 23344
Q ss_pred hHh-hhhcccCCCCCcHHHHHHHHHHHHHhhc
Q 041643 534 ALE-GAARTVLPQHPELRDLFAQAIYHLTLYQ 564 (576)
Q Consensus 534 ~Le-~~~~~~~~q~~~~~~l~~~a~~~l~~y~ 564 (576)
.|. -++.+. . +....+-...++++|-.+.
T Consensus 715 ~L~~~l~~~~-~-~~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 715 QLVEIINRPN-T-PKTLLENTAITIGRLGYVC 744 (852)
T ss_dssp HHHHHHTCSS-C-CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCC-C-CchHHHHHHHHHHHHHHhC
Confidence 443 222111 1 1244555556777776653
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.80 E-value=9.5e-08 Score=106.56 Aligned_cols=258 Identities=16% Similarity=0.148 Sum_probs=181.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcC
Q 041643 167 FISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVL 246 (576)
Q Consensus 167 li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~G 246 (576)
.+..+++.+.+.|.-+.-.+..++..+++. + .-.+..|.+-|.+.+ +..+..|..+|+++. .++..+.
T Consensus 54 vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~-~~~~~~~----- 121 (591)
T 2vgl_B 54 VVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR-VDKITEY----- 121 (591)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC-SGGGHHH-----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcccCchH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC-hHHHHHH-----
Confidence 367788889999988888888777643322 2 235788888898888 999999999998886 3444443
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhcccc
Q 041643 247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMT 326 (576)
Q Consensus 247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~ 326 (576)
.+|.+.++|.+.++.++..|++++.++...+|+. +...+.++.|..+|..
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d--------------------------- 171 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIAD--------------------------- 171 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSC---------------------------
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCC---------------------------
Confidence 3578999999999999999999999999766542 2234566777777732
Q ss_pred ccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHH
Q 041643 327 EKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKA 406 (576)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~ 406 (576)
.|+. ++..|+.+|..++..+.+. + +. +....
T Consensus 172 -----------------------------~d~~----V~~~A~~aL~~i~~~~~~~----------~---~~---~l~~~ 202 (591)
T 2vgl_B 172 -----------------------------SNPM----VVANAVAALSEISESHPNS----------N---LL---DLNPQ 202 (591)
T ss_dssp -----------------------------SCHH----HHHHHHHHHHHHTTSCCSC----------C---SC---CCHHH
T ss_pred -----------------------------CChh----HHHHHHHHHHHHHhhCCCc----------c---ch---hccHH
Confidence 1444 3578999999998654321 0 00 01224
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 041643 407 VLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAI 486 (576)
Q Consensus 407 vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~I 486 (576)
.+..|++.+.+.+ +-.|...++.++.++...+.....+++.+..+|++.+..|..+|+++|.++...-. .+++..+.+
T Consensus 203 ~~~~Ll~~l~~~~-~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~-~~~~~~~~~ 280 (591)
T 2vgl_B 203 NINKLLTALNECT-EWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP-KDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHCC-HHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC-BTTBSHHHH
T ss_pred HHHHHHHcCCCCC-chHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC-CCHHHHHHH
Confidence 5677777776654 77888888999888754333334689999999999999999999999999863100 012333333
Q ss_pred HHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643 487 IEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS 519 (576)
Q Consensus 487 v~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~ 519 (576)
. ....++|+.|+. ++. +|..|+.++..+...
T Consensus 281 ~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 281 L-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp H-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 2 345688888876 555 888899999888653
No 54
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.77 E-value=1.9e-08 Score=114.40 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=110.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHH-HHccCCChHHHHHHHHHHHHhhcC--CchHHHHHH
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLK-LLKEAASPDAQTAAANALFNIATD--QETVRFIVD 244 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~-LL~~g~~~~~q~~AA~AL~nLa~~--~~~~~~iv~ 244 (576)
+..|++++.+.|..|+.+|.+|+. ++.+++.+..+|+|++++. +|.+.+ .+++++|++||.||+.+ .+.+..+++
T Consensus 40 l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d~~~~l~~ 117 (684)
T 4gmo_A 40 LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEADFCVHLYR 117 (684)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 678999999999999999999997 5889999999999999876 566556 99999999999999974 577889999
Q ss_pred cCCHHHHHHhhcCCCh---------------------hHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhcc
Q 041643 245 VLGVPIIVSVLGEAPV---------------------KVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCM 299 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~~---------------------~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~ 299 (576)
.|++++|..+|++... ++..++..+|.+|+..+.+..+.+...++|+.|+.+|..
T Consensus 118 ~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 118 LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999853211 233457788899998888888899999999999999853
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.67 E-value=6.3e-07 Score=94.53 Aligned_cols=293 Identities=12% Similarity=0.072 Sum_probs=175.1
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcC-cccHHHHHhcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCc-
Q 041643 163 WVWSFISTIQMG--QIKSRVDAANELASLARDN-NRNRKIIVEEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQE- 237 (576)
Q Consensus 163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~-~~~~~~I~~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~- 237 (576)
++-.++..++++ +...|..|..+|..++... +..-.... ...++.|+++|++.. ++.++..|+++|.++...-+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455668888998 8999999999999998642 11111111 236788999998872 38999999999999765321
Q ss_pred hHH-HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCch-hHHHhhccccccCCCcchhhhhHH
Q 041643 238 TVR-FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTR-SLISLLCMDIALDLPKPESAKTTI 315 (576)
Q Consensus 238 ~~~-~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~-~LV~LL~~~t~~~~~~~i~~~~si 315 (576)
+.. .....-.++.+.+++.+++.+++..++++|..++...+.. +. ..++ .++.++-..
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~--~~~~~~l~~~~~~~--------------- 267 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---ME--TYMGPALFAITIEA--------------- 267 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG---CT--TTTTTTHHHHHHHH---------------
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH---------------
Confidence 110 1111114667777788888999999999999999754321 11 1122 333332100
Q ss_pred HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHH--
Q 041643 316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELR-- 393 (576)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lr-- 393 (576)
....++++ +..|.+.+..++..........+...+-+
T Consensus 268 -------------------------------------~~~~~~~v----~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 268 -------------------------------------MKSDIDEV----ALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp -------------------------------------HHCSSHHH----HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred -------------------------------------HcCCchHH----HHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 00123333 34556655555432100000000000000
Q ss_pred --HhhhccCchhHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHhcCCchh-hhCcHHHHHHhhcCCCHHHHHHH
Q 041643 394 --RSAFKTNSPAAKAVLDQLLRLIHEE------SDAMLQTPAIRSIGCLAKTFPAK-EKRMIGPLVALLSNRNVDVATEA 464 (576)
Q Consensus 394 --r~a~k~~s~a~~~vV~~Ll~lL~~~------~~~~lq~~a~~aLgnLa~~~~~~-~~~~I~~LV~LL~~~~~~V~~eA 464 (576)
+..+....+..+.+++.|++.+.+. ++..+...|..+|+.|+..++.. -..++|.+...|++.+..++..|
T Consensus 307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred ccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 0000000012345677787777543 12357888999999999866531 12356677778889999999999
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643 465 VIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG 521 (576)
Q Consensus 465 a~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~ 521 (576)
.++|+.++.+.. ++..+... ...+|.|+.+|...+. ++..|+++|+.++...+
T Consensus 387 l~~l~~l~~~~~---~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 387 VMAFGCILEGPE---PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHTSSSSC---TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhcCCc---HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999985321 11111111 4578899999987777 89999999999975443
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.63 E-value=3.4e-06 Score=94.60 Aligned_cols=126 Identities=15% Similarity=0.070 Sum_probs=93.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch-
Q 041643 160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET- 238 (576)
Q Consensus 160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~- 238 (576)
+..++..+...|...++..|..|+.++..+...+++.. .+.++.|.++|.+.+ +.++..|+++|..++.+...
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHH
Confidence 34456666788899999999999999999988655322 257888999998878 99999999999999875322
Q ss_pred HHHHHHcCCHHHHHHhhcC---------------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc
Q 041643 239 VRFIVDVLGVPIIVSVLGE---------------APVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC 298 (576)
Q Consensus 239 ~~~iv~~Gavp~LV~lL~s---------------~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~ 298 (576)
...+ ...+|.|+++|++ .++-.|.....+|+.++..++...+ ..++.|-.++.
T Consensus 214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~ 281 (618)
T 1w63_A 214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVAT 281 (618)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHh
Confidence 2222 3678999988863 4688899999999999987765432 34455555553
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.47 E-value=1.5e-05 Score=89.37 Aligned_cols=247 Identities=15% Similarity=0.069 Sum_probs=170.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG 247 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga 247 (576)
+..+++.+.+.|.-.--.+..++..++ +... -.+..|.+-|.+.+ +..+..|.++|+++.. + .++ ...
T Consensus 76 ik~~~s~~~~~Krl~Yl~~~~~~~~~~---e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~-~----~~~-~~l 143 (618)
T 1w63_A 76 LKLIASQKFTDKRIGYLGAMLLLDERQ---DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS-S----EMC-RDL 143 (618)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHCCCCH---HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC-H----HHH-HHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHhCCCc---HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC-H----HHH-HHH
Confidence 677888899999888777887776533 2211 25788999999888 9999999999999984 2 233 246
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccc
Q 041643 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTE 327 (576)
Q Consensus 248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~ 327 (576)
++.+.++|++.++.++..|+.++.++...+|+.- .+.++.|..+|.
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~----------------------------- 189 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN----------------------------- 189 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT-----------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC-----------------------------
Confidence 8899999999999999999999999997655321 122222222221
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHH
Q 041643 328 KSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAV 407 (576)
Q Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~v 407 (576)
..|+.| +..|..+|..++..+. +... .|. .+
T Consensus 190 ---------------------------D~d~~V----~~~Al~~L~~i~~~~~----------~~~~-~~~-------~~ 220 (618)
T 1w63_A 190 ---------------------------EKNHGV----LHTSVVLLTEMCERSP----------DMLA-HFR-------KL 220 (618)
T ss_dssp ---------------------------CCCHHH----HHHHHHHHHHHCCSHH----------HHHH-HHH-------TT
T ss_pred ---------------------------CCCHhH----HHHHHHHHHHHHHhCh----------HHHH-HHH-------HH
Confidence 235554 4678889988875422 2211 122 24
Q ss_pred HHHHHHHhhh--------------cCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhc------CCCHHHHHHHHHH
Q 041643 408 LDQLLRLIHE--------------ESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLS------NRNVDVATEAVIA 467 (576)
Q Consensus 408 V~~Ll~lL~~--------------~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~------~~~~~V~~eAa~A 467 (576)
++.|+++|.+ ..++-.|...++.++.+++..+.....+++.|..+++ +.+..|..+|+++
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~ 300 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLT 300 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 5666665543 1347889999999999997655444466677766653 3456799999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643 468 LSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS 519 (576)
Q Consensus 468 L~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~ 519 (576)
+.++... ++.+. .++..|..+|.+++. ++..|+.+|+.++.+
T Consensus 301 i~~l~~~-----~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 301 IMDIKSE-----SGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHHSCCC-----HHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH
T ss_pred HHhcCCC-----HHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Confidence 9988531 22221 367889999987776 888899988888754
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.39 E-value=6.1e-06 Score=86.90 Aligned_cols=235 Identities=12% Similarity=0.076 Sum_probs=147.1
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccHH-HHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643 163 WVWSFISTIQMG--QIKSRVDAANELASLARDNNRNRK-IIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV 239 (576)
Q Consensus 163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~-~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~ 239 (576)
++..++..|+.. +.+.|..|+.++.++...-..+.. .....-.++.|.+++.+++ +..+..++++|..++......
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 445557788877 689999999999886532111100 0011113566667777767 899999999999998743211
Q ss_pred -HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc---------------------CCchhHHHhh
Q 041643 240 -RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRE---------------------NVTRSLISLL 297 (576)
Q Consensus 240 -~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~---------------------g~I~~LV~LL 297 (576)
...+..+.++.++..+++.+++++..+.+.+..++.... ....+... ..+|.|+..|
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH-HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-HHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 111212667888888888889999999999998885321 11111110 0111111111
Q ss_pred ccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhc
Q 041643 298 CMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSK 377 (576)
Q Consensus 298 ~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~ 377 (576)
... . ...+.++.. ++..|+.+|..|+.
T Consensus 331 ~~~----------------------------------------------d---~d~~~~~~~----~r~~a~~~L~~l~~ 357 (462)
T 1ibr_B 331 TKQ----------------------------------------------D---ENDDDDDWN----PCKAAGVCLMLLAT 357 (462)
T ss_dssp TCC----------------------------------------------C---SSCCTTCCS----HHHHHHHHHHHHHH
T ss_pred Hhc----------------------------------------------c---cccccccch----HHHHHHHHHHHHHH
Confidence 100 0 000011222 35688899988875
Q ss_pred CCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHh
Q 041643 378 GCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVAL 452 (576)
Q Consensus 378 g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~L 452 (576)
.-.+. ....+++.+...+.+.+ ..++..|+.++|+++...... -..++|.|+.+
T Consensus 358 ~~~~~--------------------~~~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~ 416 (462)
T 1ibr_B 358 CCEDD--------------------IVPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416 (462)
T ss_dssp HTTTT--------------------HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred hccHH--------------------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 32110 12246677777777654 789999999999999754311 13578999999
Q ss_pred hcCCCHHHHHHHHHHHHhhcC
Q 041643 453 LSNRNVDVATEAVIALSKFVS 473 (576)
Q Consensus 453 L~~~~~~V~~eAa~AL~nla~ 473 (576)
|++.++.|+..|+|+|++++.
T Consensus 417 l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 417 MKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp GGCSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999973
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.32 E-value=2.7e-05 Score=88.86 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=186.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH--
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV-- 239 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~-- 239 (576)
++..+...+++.+...|..|+..|+.++.... +...... ...+|.|++.|++.+ +.++..++|+|++++..-...
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence 34444567778888999999999999986432 1111122 236889999998887 999999999999998631110
Q ss_pred -HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh-----HHHHHHHhcCCchhHHHhhccccccCCCcchhhhh
Q 041643 240 -RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDS-----IAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT 313 (576)
Q Consensus 240 -~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~-----~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~ 313 (576)
.. .-...+|.|++.|++. ..++..++++|.+++.... .....+ ...++.|+.++...
T Consensus 448 ~~~-~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~------------- 510 (861)
T 2bpt_A 448 PQQ-HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRI------------- 510 (861)
T ss_dssp TTT-THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCS-------------
T ss_pred CHH-HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCc-------------
Confidence 00 1123578899989776 8899999999999885311 000000 01122222332110
Q ss_pred HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHH
Q 041643 314 TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELR 393 (576)
Q Consensus 314 si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lr 393 (576)
..++. ++..+..+|..++...... ..
T Consensus 511 -----------------------------------------d~~~~----vr~~a~~al~~l~~~~~~~---------~~ 536 (861)
T 2bpt_A 511 -----------------------------------------DNEFN----ARASAFSALTTMVEYATDT---------VA 536 (861)
T ss_dssp -----------------------------------------CCGGG----HHHHHHHHHHHHHHHCCGG---------GH
T ss_pred -----------------------------------------CcchH----HHHHHHHHHHHHHHHcchh---------hH
Confidence 00122 4577889998887543211 11
Q ss_pred HhhhccCchhHHHHHHHHHHHhhhc--------------CChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcC
Q 041643 394 RSAFKTNSPAAKAVLDQLLRLIHEE--------------SDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSN 455 (576)
Q Consensus 394 r~a~k~~s~a~~~vV~~Ll~lL~~~--------------~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~ 455 (576)
+....+++.++..+... +...++..++.+|+++++..... -..+++.++..|++
T Consensus 537 --------~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 537 --------ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence 11234555566555421 12456778999999998755431 12467788888887
Q ss_pred CCH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchh
Q 041643 456 RNV-DVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALN 533 (576)
Q Consensus 456 ~~~-~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~ 533 (576)
.+. .+++.+.++++.++..- ..+...++-+ .+|.|...|...+. ++..++.++..++...+..-.-.-..+++
T Consensus 609 ~~~~~v~~~~~~~l~~l~~~~---~~~~~~~l~~--i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~ 683 (861)
T 2bpt_A 609 KDSAFIEDDVFYAISALAASL---GKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN 683 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHH---GGGGHHHHHH--HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHH---hhhHHHHHHH--HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHH
Confidence 766 89999999999887321 1122333332 67788888865554 77788888888876555321101123334
Q ss_pred hHh-hhhcccCCCCCcHHHHHHHHHHHHHhh
Q 041643 534 ALE-GAARTVLPQHPELRDLFAQAIYHLTLY 563 (576)
Q Consensus 534 ~Le-~~~~~~~~q~~~~~~l~~~a~~~l~~y 563 (576)
.|. .+.... -+++.+..+-.+++.+-.+
T Consensus 684 ~l~~~l~~~~--~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 684 VLAQMISNPN--ARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHCTT--CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcc--ccHhhhHHHHHHHHHHHHH
Confidence 433 322111 1356666666666666554
No 60
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.27 E-value=2.7e-05 Score=89.11 Aligned_cols=277 Identities=13% Similarity=0.063 Sum_probs=170.7
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccH-HHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcC-Cch
Q 041643 163 WVWSFISTIQMG--QIKSRVDAANELASLARDNNRNR-KIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATD-QET 238 (576)
Q Consensus 163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~-~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~ 238 (576)
++..+...++.+ +.+.|..|..+|.++...-+.+- ........++.+.+++.+.+ ++.+..|..+|..+... ++.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 344445677776 68889999999988774322111 01111124667777777767 89999999999999873 333
Q ss_pred HHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHH----HHHHh----------------cCCchhHHHhhc
Q 041643 239 VRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQ----EEFVR----------------ENVTRSLISLLC 298 (576)
Q Consensus 239 ~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r----~~i~~----------------~g~I~~LV~LL~ 298 (576)
-...+....++.+...+.+.++.++..+.+.+..++....... +...+ ...+|.++.+|.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 2333444678888888888888999999999998885321100 00000 001111111111
Q ss_pred cccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcC
Q 041643 299 MDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKG 378 (576)
Q Consensus 299 ~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g 378 (576)
.. . ..-+.++.. ++..|+.+|..|+..
T Consensus 332 ~~----------------------------------------------~---~d~~~~~~~----~r~~a~~~l~~l~~~ 358 (876)
T 1qgr_A 332 KQ----------------------------------------------D---ENDDDDDWN----PCKAAGVCLMLLATC 358 (876)
T ss_dssp CC----------------------------------------------C---SSCCTTCCC----HHHHHHHHHHHHHHH
T ss_pred cc----------------------------------------------c---ccccccccH----HHHHHHHHHHHHHHH
Confidence 00 0 000011222 356788888888753
Q ss_pred CcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc-hh----hhCcHHHHHHhh
Q 041643 379 CLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP-AK----EKRMIGPLVALL 453 (576)
Q Consensus 379 ~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~-~~----~~~~I~~LV~LL 453 (576)
..+ . ....+++.+...+.+.+ ..++..|+.++|+++.... .. -..++|.|+..|
T Consensus 359 ~~~---------~-----------~~~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l 417 (876)
T 1qgr_A 359 CED---------D-----------IVPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (876)
T ss_dssp HGG---------G-----------GHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcH---------h-----------hHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 111 0 12346677777776644 8899999999999997654 21 125789999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCC-CC-CHHHHHHHHHCCCcHhHHHhhccChhHHHHHHHHHHHHhcc
Q 041643 454 SNRNVDVATEAVIALSKFVSPDN-FN-RSEHSKAIIEFDGVPPLMRLLKISDRAQVHGLVFLCYLALS 519 (576)
Q Consensus 454 ~~~~~~V~~eAa~AL~nla~~~n-~~-~~~~~~~Iv~~ggi~~Lv~LL~~~d~vq~~A~~~L~~lal~ 519 (576)
++.++.|+..|+|+|++++..-. +. ...+.. ..++.|+..|.....++..+++++.+++..
T Consensus 418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~-----~~l~~l~~~l~~~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLA-----PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH-----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974210 00 001111 245677788866533888888888888643
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.26 E-value=5.9e-05 Score=86.26 Aligned_cols=292 Identities=11% Similarity=0.080 Sum_probs=171.8
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcCcccHHHHH--hcCCHHHHHHHHccCC-ChHHHHHHHHHHHHhhcCCc
Q 041643 163 WVWSFISTIQMG--QIKSRVDAANELASLARDNNRNRKIIV--EEGGILPLLKLLKEAA-SPDAQTAAANALFNIATDQE 237 (576)
Q Consensus 163 ~v~~li~~L~~G--~~e~k~~AA~~L~~La~~~~~~~~~I~--~~GgIppLV~LL~~g~-~~~~q~~AA~AL~nLa~~~~ 237 (576)
++-.++..+.++ +...|..+..+|..+...-.. ..+. -...++.|++.|.++. +...+..|..+|.++...-.
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345557888888 889999999999998864211 1111 1234677888888762 38899999999999876311
Q ss_pred -hH-HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHH
Q 041643 238 -TV-RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTI 315 (576)
Q Consensus 238 -~~-~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si 315 (576)
+- ........++.+.+++.+.+.+++..+..+|..++...+..-........++.++..+.
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~----------------- 269 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK----------------- 269 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-----------------
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 10 11111235777888888888899999999999998754432111111122222222221
Q ss_pred HHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccc-----hhcccch
Q 041643 316 HSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSL-----WSAESNA 390 (576)
Q Consensus 316 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~I-----avae~~~ 390 (576)
..|+.+ +..|.+.+..++....... ...+...
T Consensus 270 ---------------------------------------~~~~~v----~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 306 (876)
T 1qgr_A 270 ---------------------------------------SDIDEV----ALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (876)
T ss_dssp ---------------------------------------CSSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ---------------------------------------CCchHH----HHHHHHHHHHHHHHHHhHhhhhccccccCCC
Confidence 123333 2445555555543210000 0000000
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHhcCCchh-hhCcHHHHHHhhcCCCHHHHHH
Q 041643 391 ELRRSAFKTNSPAAKAVLDQLLRLIHEE------SDAMLQTPAIRSIGCLAKTFPAK-EKRMIGPLVALLSNRNVDVATE 463 (576)
Q Consensus 391 ~lrr~a~k~~s~a~~~vV~~Ll~lL~~~------~~~~lq~~a~~aLgnLa~~~~~~-~~~~I~~LV~LL~~~~~~V~~e 463 (576)
..+. .+....+..+.+++.+++.+... ++..++..|..+++.++...... -..++|.+...|.+.+..++..
T Consensus 307 ~~~~-~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~ 385 (876)
T 1qgr_A 307 PEHT-SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 385 (876)
T ss_dssp CSSC-CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ccch-hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHH
Confidence 0000 00000012245677788877532 22467788889999998754421 1235566677788899999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643 464 AVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG 521 (576)
Q Consensus 464 Aa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~ 521 (576)
|+++|+.++.+- .++...... ...++.|+.+|...+. ++..|++++..++...+
T Consensus 386 a~~~l~~i~~~~---~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 386 AVMAFGCILEGP---EPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHTSSSS---CHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHcCC---CHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 999999998532 223222222 2368889999987666 88899999998875543
No 62
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.10 E-value=0.00019 Score=81.79 Aligned_cols=269 Identities=13% Similarity=0.103 Sum_probs=173.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCccc-HHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch---
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRN-RKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET--- 238 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~-~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~--- 238 (576)
++..+...++.++.+.|..|...|..++...+.. ...+ ....++.++..+.+.+ +..+..|...+..++.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~ 302 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPN-DKVASMTVEFWSTICEEEIDIAY 302 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455677888999999999999888643322 2222 1145667777777777 89999999999988764211
Q ss_pred ---------------HHHHHHcCCHHHHHHhhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHh
Q 041643 239 ---------------VRFIVDVLGVPIIVSVLGEA-------PVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISL 296 (576)
Q Consensus 239 ---------------~~~iv~~Gavp~LV~lL~s~-------~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~L 296 (576)
....+ ...+|.++..|... +..++..++.+|..++...+ ...++.++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--------~~~~~~l~~~ 373 (861)
T 2bpt_A 303 ELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--------NHILEPVLEF 373 (861)
T ss_dssp HHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--------GGGHHHHHHH
T ss_pred hhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--------HhHHHHHHHH
Confidence 11111 44688888888653 23678888999998885321 1245566665
Q ss_pred hccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Q 041643 297 LCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLS 376 (576)
Q Consensus 297 L~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La 376 (576)
+...- ...+.. .+..|++++..++
T Consensus 374 l~~~l----------------------------------------------------~~~~~~----~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 374 VEQNI----------------------------------------------------TADNWR----NREAAVMAFGSIM 397 (861)
T ss_dssp HHHHT----------------------------------------------------TCSSHH----HHHHHHHHHHHTS
T ss_pred HHHHc----------------------------------------------------CCCChh----HHHHHHHHHHHHH
Confidence 53110 001222 4578999999998
Q ss_pred cCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch------hhhCcHHHHH
Q 041643 377 KGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA------KEKRMIGPLV 450 (576)
Q Consensus 377 ~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~------~~~~~I~~LV 450 (576)
.+.... .+.. ....+++.|+..+.+.+ +.++..++.++|+++..... .-..++|.|+
T Consensus 398 ~~~~~~--------~~~~--------~l~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~ 460 (861)
T 2bpt_A 398 DGPDKV--------QRTY--------YVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACL 460 (861)
T ss_dssp SSSCHH--------HHHH--------HHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHH
T ss_pred cCCCHH--------HHHH--------HHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 763210 1111 12356788888887654 88999999999999875321 1125688999
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHCCCcHhHHHhhccCh--h-HHHHHHHHHHHHhcccCc
Q 041643 451 ALLSNRNVDVATEAVIALSKFVSP-----DNFNRSEHSKAIIEFDGVPPLMRLLKISD--R-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 451 ~LL~~~~~~V~~eAa~AL~nla~~-----~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d--~-vq~~A~~~L~~lal~~~~ 522 (576)
+.|++. +.++..|+|+|.+++.. .+.+. .+... .++.|++++...+ . ++..++.++..++...++
T Consensus 461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~-~~~~~-----il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY-NFYPA-----LVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG-GGHHH-----HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHhccC-hHHHHHHHHHHHHHHHhcccccchhhH-HHHHH-----HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 999775 89999999999998732 11110 11222 3567888887433 4 888888888888765554
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.99 E-value=0.0026 Score=71.27 Aligned_cols=281 Identities=17% Similarity=0.155 Sum_probs=175.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHH--ccCCChHHHHHHHHHHHHhhc-CC
Q 041643 160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLL--KEAASPDAQTAAANALFNIAT-DQ 236 (576)
Q Consensus 160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL--~~g~~~~~q~~AA~AL~nLa~-~~ 236 (576)
+...+..+..-|++.++-.+..|.++|+++.. ++. .+ ..+|++.++| .+.+ +-+++.|+.|+.++.. ++
T Consensus 109 ~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~----~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p 180 (621)
T 2vgl_A 109 IRLINNAIKNDLASRNPTFMGLALHCIANVGS--REM----AE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSP 180 (621)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHH----HH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHH----HH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhCh
Confidence 34445555667888899999999999999853 332 22 3568999999 6667 9999999999999987 33
Q ss_pred chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhc----cccc--cCCCc-c-
Q 041643 237 ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLC----MDIA--LDLPK-P- 308 (576)
Q Consensus 237 ~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~----~~t~--~~~~~-~- 308 (576)
+... ..+.++.+.++|.+.+..|+..|..++..++..++.. + ...+|.+++.|. .+.. .++.. .
T Consensus 181 ~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~ 252 (621)
T 2vgl_A 181 DLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFV 252 (621)
T ss_dssp GGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTE
T ss_pred hhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCC
Confidence 3221 2588999999999999999999999999999766542 1 134566665553 1110 11100 0
Q ss_pred -hhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH-------------------------
Q 041643 309 -ESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA------------------------- 362 (576)
Q Consensus 309 -i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~------------------------- 362 (576)
..|.. +. ++..-.... ..+|++.+.
T Consensus 253 ~~~w~q-i~-il~ll~~~~---------------------------~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~ 303 (621)
T 2vgl_A 253 PAPWLS-VK-LLRLLQCYP---------------------------PPEDPAVRGRLTECLETILNKAQEPPKSKKVQHS 303 (621)
T ss_dssp ESHHHH-HH-HHHHGGGSS---------------------------SCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHH
T ss_pred CCchHH-HH-HHHHHHHhC---------------------------CCCCHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 01111 00 000000000 001222211
Q ss_pred ----HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 041643 363 ----KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF 438 (576)
Q Consensus 363 ----~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~ 438 (576)
.+.-.|+.+++++.. .++++ +..+..|.++|.+.+ +.+++.++++|..++...
T Consensus 304 n~~~aVl~ea~~~i~~l~~-----------~~~~~-----------~~~~~~L~~~L~~~~-~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 304 NAKNAVLFEAISLIIHHDS-----------EPNLL-----------VRACNQLGQFLQHRE-TNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----------CHHHH-----------HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHTTCT
T ss_pred chHHHHHHHHHHHHHhcCC-----------cHHHH-----------HHHHHHHHHHhcCCC-cchHHHHHHHHHHHHhcc
Confidence 111234455554431 12333 345778888887655 899999999999998765
Q ss_pred chh--hhCcHHHHHHhhc-CCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHH
Q 041643 439 PAK--EKRMIGPLVALLS-NRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLC 514 (576)
Q Consensus 439 ~~~--~~~~I~~LV~LL~-~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~ 514 (576)
+.. -....+.++..|+ +.+..|+..|...|.+++. .++.+.|++ .|...+...|. .+..++.+++
T Consensus 361 ~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~------~~Nv~~Iv~-----eL~~yl~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 361 FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD------RSNAQQIVA-----EMLSYLETADYSIREEIVLKVA 429 (621)
T ss_dssp TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC------HHHHHHHHH-----HHHHHHHHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC------hhhHHHHHH-----HHHHHHHhcCHHHHHHHHHHHH
Confidence 421 1245677888888 8999999999999999974 344555543 45555554454 6666677777
Q ss_pred HHhcc
Q 041643 515 YLALS 519 (576)
Q Consensus 515 ~lal~ 519 (576)
.++..
T Consensus 430 ~la~k 434 (621)
T 2vgl_A 430 ILAEK 434 (621)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77643
No 64
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.97 E-value=0.0011 Score=77.07 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=136.5
Q ss_pred CHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh-cCCChhHHHHHHHHHHHHhcCChHHHHH
Q 041643 205 GILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL-GEAPVKVQVAVANLVARMAELDSIAQEE 283 (576)
Q Consensus 205 gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL-~s~~~~vq~~Aa~aL~~LA~~~~~~r~~ 283 (576)
.++.|+.+|.+.+ ....+.|+.+|+.+-..+.+.. ++..|++.+ .+.++.++..++.+|+-+....+
T Consensus 473 v~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~----- 540 (963)
T 4ady_A 473 VYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ----- 540 (963)
T ss_dssp HHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-----
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-----
Confidence 4678888888777 6667789999987755555544 345556654 34567888889999988875543
Q ss_pred HHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHH
Q 041643 284 FVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAK 363 (576)
Q Consensus 284 i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~ 363 (576)
..++.+++.|... +||-+|
T Consensus 541 ----e~~~~li~~L~~~-------------------------------------------------------~dp~vR-- 559 (963)
T 4ady_A 541 ----ELADDLITKMLAS-------------------------------------------------------DESLLR-- 559 (963)
T ss_dssp ----GGGHHHHHHHHHC-------------------------------------------------------SCHHHH--
T ss_pred ----HHHHHHHHHHHhC-------------------------------------------------------CCHHHH--
Confidence 3578888888532 233333
Q ss_pred HHHHHHHHHH--HhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh
Q 041643 364 VRIACAEALW--KLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK 441 (576)
Q Consensus 364 ~k~~Aa~ALw--~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~ 441 (576)
-.++.|+. +.-.||. ..|+.|+..+.+..++.++..|+.+||.++-..
T Consensus 560 --ygaa~alglAyaGTGn~-------------------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--- 609 (963)
T 4ady_A 560 --YGGAFTIALAYAGTGNN-------------------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--- 609 (963)
T ss_dssp --HHHHHHHHHHTTTSCCH-------------------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---
T ss_pred --HHHHHHHHHHhcCCCCH-------------------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---
Confidence 34555544 3323321 347778877766666789999999999986432
Q ss_pred hhCcHHHHHHhh-cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhc
Q 041643 442 EKRMIGPLVALL-SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLAL 518 (576)
Q Consensus 442 ~~~~I~~LV~LL-~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal 518 (576)
..+++.++.+| ++.++.|+..|++||+.+.. +|.. .. .+..|..|++..+. |...|+.+|+.+..
T Consensus 610 -~e~v~rlv~~L~~~~d~~VR~gAalALGli~a-Gn~~-----~~-----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 610 -YTTVPRIVQLLSKSHNAHVRCGTAFALGIACA-GKGL-----QS-----AIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp -CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS-SSCC-----HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCCc-----HH-----HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 24799999855 67899999999999998854 3321 22 34467788876666 88889999988853
No 65
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.75 E-value=0.00061 Score=73.56 Aligned_cols=259 Identities=14% Similarity=0.125 Sum_probs=152.3
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHhhcCcccHHHHHhcCC--HHHHHHHHcc---------------CC-ChHHHHHHH
Q 041643 166 SFISTIQMG-QIKSRVDAANELASLARDNNRNRKIIVEEGG--ILPLLKLLKE---------------AA-SPDAQTAAA 226 (576)
Q Consensus 166 ~li~~L~~G-~~e~k~~AA~~L~~La~~~~~~~~~I~~~Gg--IppLV~LL~~---------------g~-~~~~q~~AA 226 (576)
.++..|+.. +...+.-++..|..|.+. +++|..+.+.++ +|+++++++. +. ....|.++.
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 356777763 344455678888888886 889999987655 8888876652 11 245689999
Q ss_pred HHHHHhhcCCchHHHHHHcCCH--HHHHHhhcC-CChhHHHHHHHHHHHHhcCChHH-----HHHHHhcCCchhHHHhhc
Q 041643 227 NALFNIATDQETVRFIVDVLGV--PIIVSVLGE-APVKVQVAVANLVARMAELDSIA-----QEEFVRENVTRSLISLLC 298 (576)
Q Consensus 227 ~AL~nLa~~~~~~~~iv~~Gav--p~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~-----r~~i~~~g~I~~LV~LL~ 298 (576)
-+++-|+-+++..+.+.+.+.+ +.|+++++. ..+.+-..+..++.|+....+.. .+.+...++ +++++.|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999988888888888754 678888876 45888899999999999765321 223333444 66777775
Q ss_pred cccccCCCc-chhhh-hHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHH-h
Q 041643 299 MDIALDLPK-PESAK-TTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWK-L 375 (576)
Q Consensus 299 ~~t~~~~~~-~i~~~-~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~-L 375 (576)
... .+. .+..- ..++..+.-... ..-..| +.++.-... |
T Consensus 329 ~rk---~~Dedl~edl~~L~e~L~~~~~---------------------------~ltsfD--------eY~~El~sG~L 370 (480)
T 1ho8_A 329 ERK---YSDEELRQDISNLKEILENEYQ---------------------------ELTSFD--------EYVAELDSKLL 370 (480)
T ss_dssp SSC---CSSHHHHHHHHHHHHHHHHHHH---------------------------TCCHHH--------HHHHHHHHTCC
T ss_pred hCC---CCcHHHHHHHHHHHHHHHHHHH---------------------------hcccHH--------HHHHHHhcCCc
Confidence 432 110 01100 011110000000 000000 011111110 0
Q ss_pred hcCCcccchhcccchHHHH--hhhccCchhHHHHHHHHHHHhhh---------cCChhhHHHHHHHHHHHhcCCchh---
Q 041643 376 SKGCLLSLWSAESNAELRR--SAFKTNSPAAKAVLDQLLRLIHE---------ESDAMLQTPAIRSIGCLAKTFPAK--- 441 (576)
Q Consensus 376 a~g~~~~Iavae~~~~lrr--~a~k~~s~a~~~vV~~Ll~lL~~---------~~~~~lq~~a~~aLgnLa~~~~~~--- 441 (576)
.-++... ...--|. ..|..+- -.++..|+.+|.+ ++++.++.-|+-=||.+++..|..
T Consensus 371 ~WSP~H~-----se~FW~ENa~kf~e~~---~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i 442 (480)
T 1ho8_A 371 CWSPPHV-----DNGFWSDNIDEFKKDN---YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV 442 (480)
T ss_dssp CCCGGGG-----CHHHHHHHSGGGSSGG---GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred ccCCCcc-----chhHHHHHHHHHHhcc---hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHH
Confidence 1011110 0000000 0021110 1467888888874 223667777788899999987752
Q ss_pred --hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 442 --EKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 442 --~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
+-|+=..+-+||.+.+++|+.+|-.|+.++-
T Consensus 443 ~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 443 LDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2355566778999999999999999998874
No 66
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.67 E-value=2.4e-05 Score=69.38 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=69.9
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 041643 408 LDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAII 487 (576)
Q Consensus 408 V~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv 487 (576)
++.|+++|.+.+ +.++..|+++||++. +...+++|+.+|++.++.|+..|+|+|+++.. +
T Consensus 44 ~~~L~~~L~d~~-~~vR~~A~~aL~~~~------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~------- 103 (131)
T 1te4_A 44 FEPLLESLSNED-WRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E------- 103 (131)
T ss_dssp HHHHHHGGGCSC-HHHHHHHHHHHGGGC------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------H-------
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------H-------
Confidence 477888888654 899999999999985 24579999999999999999999999999852 1
Q ss_pred HCCCcHhHHHhhccChh-HHHHHHHHHH
Q 041643 488 EFDGVPPLMRLLKISDR-AQVHGLVFLC 514 (576)
Q Consensus 488 ~~ggi~~Lv~LL~~~d~-vq~~A~~~L~ 514 (576)
+.++.|+++|+..+. ++..|..+|.
T Consensus 104 --~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 --RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 257889999987766 8888888764
No 67
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.64 E-value=0.00042 Score=83.13 Aligned_cols=272 Identities=12% Similarity=0.086 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 164 VWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 164 v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
+-.++..+.+.+.+.|..|...|.+....+...-..-.....++.|++.|.+.+ +..|..|+.+|.+++..-.. . .+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~-~-~~ 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE-Y-QV 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH-H-HH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH-H-HH
Confidence 345577888899999999999998765432110000011235788999998777 99999999999999974322 1 11
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHH------HHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHH
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIA------QEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHS 317 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~------r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~ 317 (576)
...++.|...|.+++..++..++.+|+.++...+.. .... -...+|.|+..+..
T Consensus 85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~------------------ 144 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAK------------------ 144 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSC------------------
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcC------------------
Confidence 225678888888888889999999999988643221 0001 11244555554421
Q ss_pred HHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhh
Q 041643 318 LVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAF 397 (576)
Q Consensus 318 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~ 397 (576)
.+++. ++..|..+|..++...... +
T Consensus 145 -------------------------------------~~~~~----~~~~al~~l~~~~~~~~~~--------------l 169 (1230)
T 1u6g_C 145 -------------------------------------QEDVS----VQLEALDIMADMLSRQGGL--------------L 169 (1230)
T ss_dssp -------------------------------------CSCHH----HHHHHHHHHHHHHHHTCSS--------------C
T ss_pred -------------------------------------CCchH----HHHHHHHHHHHHHHHhHhH--------------H
Confidence 11333 3567888888887421111 1
Q ss_pred ccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh-hCcHHHHHHhhcCC-CHHHHHHHHHHHHhhcCCC
Q 041643 398 KTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE-KRMIGPLVALLSNR-NVDVATEAVIALSKFVSPD 475 (576)
Q Consensus 398 k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~-~~~I~~LV~LL~~~-~~~V~~eAa~AL~nla~~~ 475 (576)
. |....+++.|+..+.+.+ +.++..|+.+|+.++....... ..+++.|+..|... +..++..|+.+++.++..-
T Consensus 170 ~---~~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 170 V---NFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp T---TTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred H---HHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 1 122357888888887654 7899999999999997544321 24688898888543 2356777888888776311
Q ss_pred CCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCc
Q 041643 476 NFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGN 522 (576)
Q Consensus 476 n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~ 522 (576)
......++ ...++.+++.+...+. ++..++.++..++...+.
T Consensus 246 ---~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 246 ---GHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp ---SGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred ---HHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 00000001 3466777788875555 777788877777654443
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.61 E-value=5.5e-05 Score=67.05 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD 244 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~ 244 (576)
..++..|+..+...|..|+..|+.+.. ...+++|+++|++.+ +.++..|+++|+++..
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~---------- 102 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDS-GFVRSGAARSLEQIGG---------- 102 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCC-THHHHHHHHHHHHHCS----------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc----------
Confidence 445788898899999999999987742 235899999999888 9999999999999862
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHH
Q 041643 245 VLGVPIIVSVLGEAPVKVQVAVANLVAR 272 (576)
Q Consensus 245 ~Gavp~LV~lL~s~~~~vq~~Aa~aL~~ 272 (576)
..+++.|+++|++.+..++..|+++|++
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2368999999999889999999998864
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.54 E-value=0.002 Score=62.66 Aligned_cols=175 Identities=16% Similarity=0.147 Sum_probs=122.0
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhhcC-CchH-HHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHH
Q 041643 208 PLLKLLKEAASPDAQTAAANALFNIATD-QETV-RFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEF 284 (576)
Q Consensus 208 pLV~LL~~g~~~~~q~~AA~AL~nLa~~-~~~~-~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i 284 (576)
.+.+.+.+.+ ...+..|+.+|..+... ++.. ... ...++.|..+|. +.+..++..|+.+|+.|+.. .+..+
T Consensus 19 ~l~~~l~s~~-w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~---l~~~~ 92 (242)
T 2qk2_A 19 DFYDKLEEKK-WTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKG---LAKRF 92 (242)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH---HGGGG
T ss_pred HHHhhhccCC-HHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---HhhhH
Confidence 4888888777 89999999999999874 3211 001 124677888884 88999999999999999942 11111
Q ss_pred Hh--cCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643 285 VR--ENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA 362 (576)
Q Consensus 285 ~~--~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~ 362 (576)
.. ...+|+|+..+.. .++
T Consensus 93 ~~~~~~ilp~ll~~l~d--------------------------------------------------------~~~---- 112 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKE--------------------------------------------------------KKP---- 112 (242)
T ss_dssp HHHHHHHHHHHHHGGGC--------------------------------------------------------CCH----
T ss_pred HHHHHHHHHHHHHHHcC--------------------------------------------------------CCH----
Confidence 11 1234444444421 112
Q ss_pred HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCC-chh
Q 041643 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTF-PAK 441 (576)
Q Consensus 363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~-~~~ 441 (576)
.++..|..||..+..... ...+++.|+..+.+. ++.++..++..|+.+...+ +..
T Consensus 113 ~vr~~a~~aL~~~~~~~~-----------------------~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 113 NVVTALREAIDAIYASTS-----------------------LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHHHTTSC-----------------------HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCC-----------------------HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 245788899988865310 124788888888865 4899999999999976543 221
Q ss_pred -----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhc
Q 041643 442 -----EKRMIGPLVALLSNRNVDVATEAVIALSKFV 472 (576)
Q Consensus 442 -----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla 472 (576)
-..++|.|+.+|.+++.+|+..|..+|+.++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 1247899999999999999999999999886
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.018 Score=54.74 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=139.1
Q ss_pred hcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHHHHHcCCHHHHHHhh-cCCChhHHHHHHHHHHHHhcCChH
Q 041643 202 EEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRFIVDVLGVPIIVSVL-GEAPVKVQVAVANLVARMAELDSI 279 (576)
Q Consensus 202 ~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~iv~~Gavp~LV~lL-~s~~~~vq~~Aa~aL~~LA~~~~~ 279 (576)
+...+..|+++|+++- =.+|+||...|.+++. .++-...++. -|.-++ ++....+-...+.+++.+|.-.|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~~-----kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPMLK-----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHHH-----HHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 3445788999998776 7799999999999998 4555554432 334444 566666766778889999976664
Q ss_pred HHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHH
Q 041643 280 AQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPE 359 (576)
Q Consensus 280 ~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~ 359 (576)
.|+++|..|..+- + .-||.
T Consensus 104 ---------~v~~vVp~lfany-------------------------------------------------r---igd~k 122 (253)
T 2db0_A 104 ---------LVKSMIPVLFANY-------------------------------------------------R---IGDEK 122 (253)
T ss_dssp ---------HHHHHHHHHHHHS-------------------------------------------------C---CCSHH
T ss_pred ---------HHHhhHHHHHHHH-------------------------------------------------h---cCCcc
Confidence 3567777663210 0 11555
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643 360 VKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP 439 (576)
Q Consensus 360 vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~ 439 (576)
+ |.+-+.+|-.++..|+ .+- ..++.-+..++++.+ ..-...|+.-|+.+..+..
T Consensus 123 i----kIn~~yaLeeIaranP----------~l~-----------~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 123 T----KINVSYALEEIAKANP----------MLM-----------ASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSF 176 (253)
T ss_dssp H----HHHHHHHHHHHHHHCH----------HHH-----------HHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTH
T ss_pred c----eecHHHHHHHHHHhCh----------HHH-----------HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCc
Confidence 4 4677888887766543 332 357788888888655 4445556666666654333
Q ss_pred hhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 440 AKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 440 ~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
.--+-.+|.|..||..++.-|+..|..+|.++|... +.-++.|.+ -++=++..+. +|..--..|..++
T Consensus 177 ~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n----pklRkii~~------kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVIK------RLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----HHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC----HHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHH
Confidence 222346899999999999999999999999999632 566666543 1222222223 7766555555554
No 71
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.28 E-value=0.0016 Score=78.09 Aligned_cols=226 Identities=15% Similarity=0.122 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH-
Q 041643 161 LAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV- 239 (576)
Q Consensus 161 ~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~- 239 (576)
..++..++..|...+.+.|..|+.+|..++..-++ ..+ ...++.|+..|.+++ +..+..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcc
Confidence 34555567778888999999999999999864322 111 225678888888877 888999999999998632111
Q ss_pred -----HHHHHcCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhh
Q 041643 240 -----RFIVDVLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKT 313 (576)
Q Consensus 240 -----~~iv~~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~ 313 (576)
..-.-...+|.|.+.+. +++..++..|..++..++...+.. +. ..++.++..|-.
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~---l~--~~~~~ll~~l~~-------------- 182 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL---LV--NFHPSILTCLLP-------------- 182 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS---CT--TTHHHHHHHHGG--------------
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH---HH--HHHHHHHHHHHH--------------
Confidence 11112346899999998 577899999999999988532110 00 011223322210
Q ss_pred HHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHH
Q 041643 314 TIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELR 393 (576)
Q Consensus 314 si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lr 393 (576)
.....++. ++..|+.||..++....+. +
T Consensus 183 --------------------------------------~L~~~~~~----vR~~a~~al~~l~~~~~~~---------~- 210 (1230)
T 1u6g_C 183 --------------------------------------QLTSPRLA----VRKRTIIALGHLVMSCGNI---------V- 210 (1230)
T ss_dssp --------------------------------------GGGCSSHH----HHHHHHHHHHHHTTTC--------------
T ss_pred --------------------------------------HHcCCcHH----HHHHHHHHHHHHHHhcCHH---------H-
Confidence 01112333 4578999999987643211 1
Q ss_pred HhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh----hhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643 394 RSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK----EKRMIGPLVALLSNRNVDVATEAVIALS 469 (576)
Q Consensus 394 r~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~----~~~~I~~LV~LL~~~~~~V~~eAa~AL~ 469 (576)
| ..+++.|+..|.+.+++.+...++.+++.+++..+.. -..++|.+++.+.+.+++++..|.+++.
T Consensus 211 ---~-------~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~ 280 (1230)
T 1u6g_C 211 ---F-------VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 280 (1230)
T ss_dssp ---C-------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHH
T ss_pred ---H-------HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 1357788887766543456677889999998754321 1357899999998888899999999998
Q ss_pred hhc
Q 041643 470 KFV 472 (576)
Q Consensus 470 nla 472 (576)
.++
T Consensus 281 ~l~ 283 (1230)
T 1u6g_C 281 SFV 283 (1230)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.27 E-value=0.022 Score=66.37 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=124.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHH
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVD 244 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~ 244 (576)
..+..+|...+...+..|+.+|+-+-.. ..|.+ +|..|+..+.+..+......++.+|+.|....+
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------- 540 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCMLG-TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------- 540 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-------
Confidence 3346778877777778888888866443 23322 356777766555437888889999988865332
Q ss_pred cCCHHHHHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhc
Q 041643 245 VLGVPIIVSVLG-EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKK 323 (576)
Q Consensus 245 ~Gavp~LV~lL~-s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~ 323 (576)
.+++.+++.|. +.++-++..++.+++--.. +..+. .+|+.|+..+.++.. ++.+. ..-.++.-+ ....
T Consensus 541 -e~~~~li~~L~~~~dp~vRygaa~alglAya-GTGn~------~aIq~LL~~~~~d~~-d~VRr-aAViaLGlI-~~g~ 609 (963)
T 4ady_A 541 -ELADDLITKMLASDESLLRYGGAFTIALAYA-GTGNN------SAVKRLLHVAVSDSN-DDVRR-AAVIALGFV-LLRD 609 (963)
T ss_dssp -GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TSCCH------HHHHHHHHHHHHCSC-HHHHH-HHHHHHHHH-TSSS
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-CCCCH------HHHHHHHHHhccCCc-HHHHH-HHHHHHHhh-ccCC
Confidence 14556666765 3556777777766653222 12221 235556665543310 00000 000011100 0000
Q ss_pred cccccccccCCCCCCCCCCCCCCCC-cccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCch
Q 041643 324 EMTEKSTNVTNNSDGSSRGGHGQHY-NKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSP 402 (576)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~ 402 (576)
. . -.+. +....+..||.+| ..|+.||..++.|+..
T Consensus 610 ~-e------------------~v~rlv~~L~~~~d~~VR----~gAalALGli~aGn~~--------------------- 645 (963)
T 4ady_A 610 Y-T------------------TVPRIVQLLSKSHNAHVR----CGTAFALGIACAGKGL--------------------- 645 (963)
T ss_dssp C-S------------------SHHHHTTTGGGCSCHHHH----HHHHHHHHHHTSSSCC---------------------
T ss_pred H-H------------------HHHHHHHHHHhcCCHHHH----HHHHHHHHHhccCCCc---------------------
Confidence 0 0 0000 0012234566654 6788888888776532
Q ss_pred hHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHH----HHHhhc--CCCHHHHHHHHHHHHhh
Q 041643 403 AAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGP----LVALLS--NRNVDVATEAVIALSKF 471 (576)
Q Consensus 403 a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~----LV~LL~--~~~~~V~~eAa~AL~nl 471 (576)
..+++.|-++..+.+ +.+...|+-+||.+.-...+....-+.. |..... +.+...+-.|..|.+-+
T Consensus 646 --~~aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 646 --QSAIDVLDPLTKDPV-DFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp --HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHccCCC-HHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 135676666666554 7788888888888864322211111333 333332 34566677777777744
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.26 E-value=0.0098 Score=58.49 Aligned_cols=184 Identities=19% Similarity=0.210 Sum_probs=135.9
Q ss_pred CCHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q 041643 204 GGILPLLKLLKEAASPDAQTAAANALFNIATDQ-ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQE 282 (576)
Q Consensus 204 GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~ 282 (576)
+.+..|+.||.+.+ +..|.+|..+|.++-+.- +..+...=...++.++.++++.++.+.-.|..+|..|-.+.|-.-.
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 36788999998888 999999999999999852 3333333345899999999999999999999999998876554444
Q ss_pred HHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHH
Q 041643 283 EFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKA 362 (576)
Q Consensus 283 ~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~ 362 (576)
.+.+ .+..|++++.++ ++
T Consensus 112 ~y~K--l~~aL~dlik~~--------------------------------------------------------~~---- 129 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESP--------------------------------------------------------DD---- 129 (265)
T ss_dssp HHHH--HHHHHHHHTTSC--------------------------------------------------------CH----
T ss_pred HHHH--HHHHHHHHhcCC--------------------------------------------------------Cc----
Confidence 4433 235555555322 11
Q ss_pred HHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchh-
Q 041643 363 KVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAK- 441 (576)
Q Consensus 363 ~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~- 441 (576)
-+...|+..|..|. .. + ..+.+++.|.+++ ++++..++..+++++-|++....+.
T Consensus 130 il~~eaae~Lgklk---v~-------------------~-~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 130 MMRIETIDVLSKLQ---PL-------------------E-DSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHCC---BS-------------------C-CCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred hHHHHHHHHhCcCC---cc-------------------c-chHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHH
Confidence 13457888888772 11 1 1246899999999 4556999999999999999755432
Q ss_pred -hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCC
Q 041643 442 -EKRMIGPLVALLSNRNVDVATEAVIALSKFVSP 474 (576)
Q Consensus 442 -~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~ 474 (576)
-+.++..+-.+|++.++.+.+-|--+|-.+.+-
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 235667777889999999999999999999863
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.07 E-value=0.01 Score=57.56 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=122.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHc-cCCChHHHHHHHHHHHHhhcCCch-HHHHHHc
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLK-EAASPDAQTAAANALFNIATDQET-VRFIVDV 245 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~-~g~~~~~q~~AA~AL~nLa~~~~~-~~~iv~~ 245 (576)
...+++.+-..|..|+..|..+....+.....-. ...++.|.++|. +.+ ..++..|+.+|..|+..-.. -... -.
T Consensus 21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~-~~ 97 (242)
T 2qk2_A 21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNY-AS 97 (242)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHH-HH
Confidence 6788888999999999999998875322110000 123677888884 667 99999999999999963211 1111 12
Q ss_pred CCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643 246 LGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM 325 (576)
Q Consensus 246 Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~ 325 (576)
-.+|.+.+.|++.+..+++.+..+|..++...+ .. ..++.|...|+
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~--------------------------- 143 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLS--------------------------- 143 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTT---------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHc---------------------------
Confidence 368999999999999999999999999986431 11 12233333331
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCC-cccchhcccchHHHHhhhccCchhH
Q 041643 326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGC-LLSLWSAESNAELRRSAFKTNSPAA 404 (576)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~-~~~Iavae~~~~lrr~a~k~~s~a~ 404 (576)
..++. +|..+...|..+.... ++.. + .+-.
T Consensus 144 -----------------------------~~~~~----vr~~~l~~l~~~l~~~~~~~~-------------~---~~~l 174 (242)
T 2qk2_A 144 -----------------------------NKNPS----VKSETALFIARALTRTQPTAL-------------N---KKLL 174 (242)
T ss_dssp -----------------------------CSCHH----HHHHHHHHHHHHHTTCCGGGC-------------C---HHHH
T ss_pred -----------------------------CCChH----HHHHHHHHHHHHHHHcCCCCc-------------c---HHHH
Confidence 11333 4577888888754321 1100 0 0112
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP 439 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~ 439 (576)
..+++.|+.++.+.+ +.++..|..++|.+++...
T Consensus 175 ~~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPD-PTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHcC
Confidence 357888999997655 8899999999999986443
No 75
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.97 E-value=0.017 Score=64.66 Aligned_cols=252 Identities=18% Similarity=0.175 Sum_probs=161.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG 247 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga 247 (576)
+..+++.+.+.|.-.--.+..++..++ +.+.- .+..|.+=|.+.+ +-.+-.|.++|+++.. ++ +++ ..
T Consensus 80 vkl~~s~~~~~Krl~YL~l~~~~~~~~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~-~e----~~~-~l 147 (621)
T 2vgl_A 80 VNLLSSNRYTEKQIGYLFISVLVNSNS---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS-RE----MAE-AF 147 (621)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHSCCCCH---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC-HH----HHH-HH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHccCCc---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC-HH----HHH-HH
Confidence 678889999999988888888776543 22211 4677888888888 9999999999999954 33 333 36
Q ss_pred HHHHHHhh--cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccc
Q 041643 248 VPIIVSVL--GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEM 325 (576)
Q Consensus 248 vp~LV~lL--~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~ 325 (576)
+|.+.++| .+.++-|+..|+-++..+...+|+. +...+.++.|..+|..
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d-------------------------- 198 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLND-------------------------- 198 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCC--------------------------
Confidence 78899999 8889999999999999999766543 2223666777777732
Q ss_pred cccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHH
Q 041643 326 TEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAK 405 (576)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~ 405 (576)
.||. ++..|..+|..++..+.. .|++ ...
T Consensus 199 ------------------------------~d~~----V~~~a~~~l~~i~~~~~~--------------~~~~---~~~ 227 (621)
T 2vgl_A 199 ------------------------------QHLG----VVTAATSLITTLAQKNPE--------------EFKT---SVS 227 (621)
T ss_dssp ------------------------------SCHH----HHHHHHHHHHHHHHHCHH--------------HHTT---HHH
T ss_pred ------------------------------CCcc----HHHHHHHHHHHHHHhChH--------------HHHH---HHH
Confidence 1333 346677777777643321 1221 122
Q ss_pred HHHHHHHHHhhhcC------------ChhhHHHHHHHHHHHhcCC-chhhhCcHHHHHHhh------------cCCCH--
Q 041643 406 AVLDQLLRLIHEES------------DAMLQTPAIRSIGCLAKTF-PAKEKRMIGPLVALL------------SNRNV-- 458 (576)
Q Consensus 406 ~vV~~Ll~lL~~~~------------~~~lq~~a~~aLgnLa~~~-~~~~~~~I~~LV~LL------------~~~~~-- 458 (576)
.++..|-+++..++ +|-.|.-.++.++.+++.. +.....++..|-.++ ++.+.
T Consensus 228 ~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~ 307 (621)
T 2vgl_A 228 LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN 307 (621)
T ss_dssp HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHH
Confidence 34454545554321 3567877888888777532 221222333333333 11233
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643 459 DVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG 521 (576)
Q Consensus 459 ~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~ 521 (576)
.|.-||+.++..+... ++..+ .++..|..+|.++++ +|.-|+.++..++...+
T Consensus 308 aVl~ea~~~i~~l~~~-----~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 308 AVLFEAISLIIHHDSE-----PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HHHHHHHHHHHHHCCC-----HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcCCc-----HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 7888899998888521 23222 255678888876666 88888888888865444
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.076 Score=50.52 Aligned_cols=213 Identities=15% Similarity=0.205 Sum_probs=139.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhc-CCchHHH
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIAT-DQETVRF 241 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~-~~~~~~~ 241 (576)
++..++..|...---.+.+|...+..+++.-+ ..+ +..+..|+-+|+.......-.+-|++++-++. .|+-.+
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~---el~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~- 106 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRE---DLY--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK- 106 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG---GGH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH-
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH---HHH--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH-
Confidence 34445566655444567788888888776432 222 23455566666544326665567799999998 455444
Q ss_pred HHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhh
Q 041643 242 IVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQM 321 (576)
Q Consensus 242 iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~ 321 (576)
+.||.+..=.+-|++..+.+.+.+|..++..+|+.-- ++++-+..+|.+.
T Consensus 107 ----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk--------------------- 156 (253)
T 2db0_A 107 ----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK--------------------- 156 (253)
T ss_dssp ----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS---------------------
T ss_pred ----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC---------------------
Confidence 3578888888999999999999999999988776543 2334555666322
Q ss_pred hccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCc
Q 041643 322 KKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNS 401 (576)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s 401 (576)
|. .+=.-||-.++.=. +. .+|- -.
T Consensus 157 -----------------------------------d~-------~Dkl~aLnFi~alG-------en--~~~y-----v~ 180 (253)
T 2db0_A 157 -----------------------------------NR-------EDKLTALNFIEAMG-------EN--SFKY-----VN 180 (253)
T ss_dssp -----------------------------------SH-------HHHHHHHHHHHTCC-------TT--THHH-----HG
T ss_pred -----------------------------------Ch-------HHHHHHHHHHHHHh-------cc--Cccc-----cC
Confidence 11 11123444443211 11 1221 11
Q ss_pred hhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643 402 PAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVS 473 (576)
Q Consensus 402 ~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~ 473 (576)
-.++.|..+|.+.+ +-+...|+.+|+++|+..+. =..+|-.-+.=++.++..|++..-.+|++++-
T Consensus 181 ----PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 ----PFLPRIINLLHDGD-EIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ----GGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ----cchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 25788999998765 88999999999999986654 12345555666889999999999999998863
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.011 Score=58.39 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=73.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH-HhhcCcccHHHHHh-cCCHHHHHHHH-ccCCChHHHHHHHHHHHHhhcCC---chH-H
Q 041643 168 ISTIQMGQIKSRVDAANELAS-LARDNNRNRKIIVE-EGGILPLLKLL-KEAASPDAQTAAANALFNIATDQ---ETV-R 240 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~-La~~~~~~~~~I~~-~GgIppLV~LL-~~g~~~~~q~~AA~AL~nLa~~~---~~~-~ 240 (576)
-..+++.+-..|..|...|.. +...+++......+ ...+..|.+.| +..+ ..++..|+.+|..|+..- .-. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n-~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN-IQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHhcccccccHH
Confidence 467899999999999999999 87543322100011 12367788888 4555 889999999999999622 111 1
Q ss_pred HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643 241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 241 ~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
.. .-.+|.+++.+++....|+..+..+|-.++.
T Consensus 101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~ 133 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICK 133 (249)
T ss_dssp HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 11 1158899999988888888888887777774
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.69 E-value=0.089 Score=54.93 Aligned_cols=242 Identities=11% Similarity=0.035 Sum_probs=143.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCC
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLG 247 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Ga 247 (576)
+..+++.+.+.|.-.--.+-.++..+++ .| =++..|.+=+.+++ +-.+-.|.++|++|... +-.+. .
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~-~m~~~-----l 140 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKE-DSYRGPAVRALCQITDS-TMLQA-----I 140 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT-TTHHH-----H
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH-HHHHH-----H
Confidence 5678888988888776677777765322 22 25788999999888 99999999999999753 33332 4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccc
Q 041643 248 VPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTE 327 (576)
Q Consensus 248 vp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~ 327 (576)
.+.+-+.|.+.++-|+..|+.+...|....|+.- + +.+..+-+++...
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~--------------------------- 188 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSD--------------------------- 188 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCS---------------------------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCC---------------------------
Confidence 5678888999999999999999999987776532 1 4555555555321
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHH
Q 041643 328 KSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAV 407 (576)
Q Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~v 407 (576)
+|-| ...|..+|..+...+. ..
T Consensus 189 -----------------------------n~~V----~~~Al~lL~ei~~~d~-------------------------~a 210 (355)
T 3tjz_B 189 -----------------------------NIMV----QYHALGLLYHVRKNDR-------------------------LA 210 (355)
T ss_dssp -----------------------------SHHH----HHHHHHHHHHHHTTCH-------------------------HH
T ss_pred -----------------------------CccH----HHHHHHHHHHHHhhch-------------------------HH
Confidence 2222 2456677776654321 11
Q ss_pred HHHHHHHhhhcC--ChhhHHHHHHHHHHHhcCC-chhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 408 LDQLLRLIHEES--DAMLQTPAIRSIGCLAKTF-PAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 408 V~~Ll~lL~~~~--~~~lq~~a~~aLgnLa~~~-~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
+..|+.-+..+. ++-.|.--++.++.+++.. +.....+++.|...|++.+.-|.-||+.+|..+.... .+
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-------~~ 283 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-------AK 283 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-------HH
Confidence 233333333221 2444444455554544432 2223467888888999999999999999999885311 11
Q ss_pred HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccC
Q 041643 485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAG 521 (576)
Q Consensus 485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~ 521 (576)
.+ .-++.+|..+|.+++. +|--|+..|..++...|
T Consensus 284 ~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 284 EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 11 3467888888888877 88888887776654333
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.65 E-value=0.085 Score=62.00 Aligned_cols=302 Identities=18% Similarity=0.187 Sum_probs=189.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCch---HH-
Q 041643 165 WSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQET---VR- 240 (576)
Q Consensus 165 ~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~---~~- 240 (576)
.+++..+...+...+..|+..|.++...+... ..+..+.+..|.+.+++.. .. +.|..++..|+..... .+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 17 EELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCccc
Confidence 33456666666566778888898886532111 1222467888888887654 22 9999999999964321 22
Q ss_pred HHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHH
Q 041643 241 FIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL-DSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLV 319 (576)
Q Consensus 241 ~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~-~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v 319 (576)
.++ +-+|.+.+.+.+....|+..|..++..+... +++.- ...+|.|+.-|.+..
T Consensus 92 ~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~------------------ 146 (986)
T 2iw3_A 92 YIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETN------------------ 146 (986)
T ss_dssp HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCC------------------
T ss_pred chH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcccc------------------
Confidence 222 5678888888777788888877777776643 34332 234677777774321
Q ss_pred hhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhcc
Q 041643 320 QMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKT 399 (576)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~ 399 (576)
+| +-|..|...+-.|+...++.+ -+
T Consensus 147 ---kw--------------------------------------~~k~~~l~~~~~~~~~~~~~~---------~~----- 171 (986)
T 2iw3_A 147 ---KW--------------------------------------QEKIAILAAFSAMVDAAKDQV---------AL----- 171 (986)
T ss_dssp ---CH--------------------------------------HHHHHHHHHHHHHHHHSHHHH---------HH-----
T ss_pred ---ch--------------------------------------HHHHHHHHHHHHHHHHhHHHH---------HH-----
Confidence 11 235677777777765332211 00
Q ss_pred CchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhh-hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCC
Q 041643 400 NSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKE-KRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN 478 (576)
Q Consensus 400 ~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~-~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~ 478 (576)
.-..+|+.+-..+.+-. +++...|..++-.+|....+.+ ...||.||+.+.+.+. .-++...|+.-+ +.
T Consensus 172 ---~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~t----fv 241 (986)
T 2iw3_A 172 ---RMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATT----FV 241 (986)
T ss_dssp ---HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCC----CC
T ss_pred ---hccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCe----eE
Confidence 01235555555555443 7889999999999988766654 3689999999987754 344555554322 22
Q ss_pred CHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcccCchHHHHhccchhhHh-hhhc-ccCCCCCcHHHHHHH
Q 041643 479 RSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALSAGNSKALEQARALNALE-GAAR-TVLPQHPELRDLFAQ 555 (576)
Q Consensus 479 ~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~~~l~~~~~l~~Le-~~~~-~~~~q~~~~~~l~~~ 555 (576)
..-..-.+. =-+|.|.+=|+..+. +++.++..+.||+.=+.|-... +.++|.|. ++++ .+..=+|+.+++..+
T Consensus 242 ~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~--~~f~~~l~p~~~~~~~~~~~pe~r~~~~~ 317 (986)
T 2iw3_A 242 AEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVI--APFLGKLLPGLKSNFATIADPEAREVTLR 317 (986)
T ss_dssp SCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHH--HHHHTTTHHHHHHHTTTCCSHHHHHHHHH
T ss_pred eeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHH--hhhhhhhhhHHHHHhhccCCHHHHHHHHH
Confidence 111111110 024666666665555 7778888888998767775543 45677776 7665 455668999999999
Q ss_pred HHHHHHhhcC
Q 041643 556 AIYHLTLYQA 565 (576)
Q Consensus 556 a~~~l~~y~~ 565 (576)
|+..|..--.
T Consensus 318 a~~~l~~~~~ 327 (986)
T 2iw3_A 318 ALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 9999976533
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.08 E-value=0.037 Score=57.85 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchH
Q 041643 160 ILAWVWSFISTIQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETV 239 (576)
Q Consensus 160 i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~ 239 (576)
+...+..+..-++.+++-.|-.|.++|+++.. ++.... ..+++.+.|.+.+ +-++..|+.+..+|-... .
T Consensus 102 ~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~--p 171 (355)
T 3tjz_B 102 VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCS--F 171 (355)
T ss_dssp GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTC--H
T ss_pred HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccC--H
Confidence 33556666778899999999999999999864 333222 4577888888888 999999999999997632 2
Q ss_pred HHHHHcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 041643 240 RFIVDVLGVPIIVSVLGEAPVKVQVAVANLVARMAELD 277 (576)
Q Consensus 240 ~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~ 277 (576)
+ +++ +.+..+-+++.+.+..++..|..+|..+...+
T Consensus 172 e-~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 172 D-VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 2 343 68999999999999999999999999998755
No 81
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.85 E-value=0.34 Score=47.72 Aligned_cols=136 Identities=23% Similarity=0.317 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 041643 356 ETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLA 435 (576)
Q Consensus 356 ~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa 435 (576)
+|+.+ |..+-.+|-.+-... +..+|+- ..+.+++.+++++.+.+ +.+-..|+++|+.|-
T Consensus 45 kD~~v----k~raL~~LeellK~~---------~~~l~~~-------~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LL 103 (265)
T 3b2a_A 45 DDETT----RLRAFVALGEILKRA---------DSDLRMM-------VLERHLDVFINALSQEN-EKVTIKALRALGYLV 103 (265)
T ss_dssp SCHHH----HHHHHHHHHHHHHHS---------CHHHHHH-------HHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHH
T ss_pred cchHH----HHHHHHHHHHHHHhc---------cccccHH-------HHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH
Confidence 46654 456667776654321 1234432 34578899999997655 899999999999998
Q ss_pred cCCchh---hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHH
Q 041643 436 KTFPAK---EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLV 511 (576)
Q Consensus 436 ~~~~~~---~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~ 511 (576)
...+-. -.+++..|++++.+++.-...||+-.++.+- ..+ .. +.+ +..|.+|+.+.+. +|..|+.
T Consensus 104 e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklk-v~~-~~----~~V-----~~~l~sLl~Skd~~vK~agl~ 172 (265)
T 3b2a_A 104 KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQ-PLE-DS----KLV-----RTYINELVVSPDLYTKVAGFC 172 (265)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC-BSC-CC----HHH-----HHHHHHHHTCSSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCC-ccc-ch----HHH-----HHHHHHHHhCCChhHHHHHHH
Confidence 765532 2367899999999999999999999999983 221 11 222 3456789977776 9999999
Q ss_pred HHHHHhcccCch
Q 041643 512 FLCYLALSAGNS 523 (576)
Q Consensus 512 ~L~~lal~~~~~ 523 (576)
++-+++...+|.
T Consensus 173 ~L~eia~~S~D~ 184 (265)
T 3b2a_A 173 LFLNMLNSSADS 184 (265)
T ss_dssp HHHHHGGGCSSC
T ss_pred HHHHhhcccCCH
Confidence 999998755543
No 82
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=95.65 E-value=0.076 Score=54.80 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-HhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHH
Q 041643 163 WVWSFISTIQMGQIKSRVDAANELAS-LARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRF 241 (576)
Q Consensus 163 ~v~~li~~L~~G~~e~k~~AA~~L~~-La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~ 241 (576)
-+...+..|++++.+.+.++...|.. +..+ .......++.||+..|++...+++ ...|-.+.+||.+|-.+.+.-.-
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccc
Confidence 35566889999999999999888887 5544 667888889999999999999998 99999999999999988777777
Q ss_pred HHH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh-------cC---CchhHHHhhc
Q 041643 242 IVD-VLGVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFVR-------EN---VTRSLISLLC 298 (576)
Q Consensus 242 iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~-------~g---~I~~LV~LL~ 298 (576)
|+. .-.|.-++.++.+....+...|...|..+...++..-..+.+ .. -...||.+|.
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 775 345778888888877888888999999988766544333322 11 2556777774
No 83
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.91 E-value=0.51 Score=50.93 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=55.7
Q ss_pred CcHHHHHHhhcC----------CCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHH
Q 041643 444 RMIGPLVALLSN----------RNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVF 512 (576)
Q Consensus 444 ~~I~~LV~LL~~----------~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~ 512 (576)
.++..|+++|++ .++.+..=|+.=|+.|+. .+|+-+..+-+.||=..+++|+.+.|+ |+.+|+.+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr----~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE----LLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH----HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHH----HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 468999999973 356677779999999984 246778888888888888899998887 99999988
Q ss_pred HHHHh
Q 041643 513 LCYLA 517 (576)
Q Consensus 513 L~~la 517 (576)
+-.+-
T Consensus 471 vQklm 475 (480)
T 1ho8_A 471 TQAII 475 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 84
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.27 Score=48.31 Aligned_cols=143 Identities=10% Similarity=0.163 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCc-hh-
Q 041643 364 VRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFP-AK- 441 (576)
Q Consensus 364 ~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~-~~- 441 (576)
+...|+.+|..|+.+ ++...|.. +-...+++.++..+.+.. +.++..+..++-+++.... ..
T Consensus 77 v~~~A~~al~~la~~-------------l~~~~f~~--~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~ 140 (249)
T 2qk1_A 77 AVALAAQSVELICDK-------------LKTPGFSK--DYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLAS 140 (249)
T ss_dssp HHHHHHHHHHHHHHH-------------HCTTTSCH--HHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCT
T ss_pred HHHHHHHHHHHHHHh-------------cccccccH--HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcccccc
Confidence 457899999999853 22012210 234567888888887654 7888888888888876431 10
Q ss_pred ---hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHh
Q 041643 442 ---EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLA 517 (576)
Q Consensus 442 ---~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~la 517 (576)
-..+++.|+..|+++++.+++++...|+.++...... ++.-..-.....+|.|+++|...+. ++..|..++..+.
T Consensus 141 ~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~-~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG-YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC-SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1146888999999999999999999999987432110 0111112224678999999987766 8888888888877
Q ss_pred cccCch
Q 041643 518 LSAGNS 523 (576)
Q Consensus 518 l~~~~~ 523 (576)
..+|+.
T Consensus 220 ~~vG~~ 225 (249)
T 2qk1_A 220 KIFGMN 225 (249)
T ss_dssp HHHCSG
T ss_pred HHhCHH
Confidence 667763
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.37 E-value=12 Score=43.85 Aligned_cols=208 Identities=14% Similarity=0.125 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHh
Q 041643 175 QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSV 254 (576)
Q Consensus 175 ~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~l 254 (576)
....|..|..++..+...-+++ .+ ...+|.|+..|++..-=..|..|...|..|+......-...=-..||.+-+.
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 183 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSET 183 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhh
Confidence 4667766666665555432222 22 3468999999987632688899999999999753222222224578999999
Q ss_pred hcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCC
Q 041643 255 LGEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTN 334 (576)
Q Consensus 255 L~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~ 334 (576)
+-+-..+|+.+|-.++-.++..- .++|. +..||.||+-+....
T Consensus 184 ~~d~k~~v~~~~~~~~~~~~~~~-~n~d~---~~~~~~~~~~~~~p~--------------------------------- 226 (986)
T 2iw3_A 184 MWDTKKEVKAAATAAMTKATETV-DNKDI---ERFIPSLIQCIADPT--------------------------------- 226 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHGGGC-CCTTT---GGGHHHHHHHHHCTT---------------------------------
T ss_pred cccCcHHHHHHHHHHHHHHHhcC-CCcch---hhhHHHHHHHhcChh---------------------------------
Confidence 88888999999999998888632 22221 235677777664321
Q ss_pred CCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHH
Q 041643 335 NSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRL 414 (576)
Q Consensus 335 ~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~l 414 (576)
..-.++..|+.-. .|++- ++|+-.-+++.|.+-
T Consensus 227 --------------------------------~~~~~~~~l~~~t----fv~~v-----------~~~~l~~~~p~l~r~ 259 (986)
T 2iw3_A 227 --------------------------------EVPETVHLLGATT----FVAEV-----------TPATLSIMVPLLSRG 259 (986)
T ss_dssp --------------------------------HHHHHHHHHTTCC----CCSCC-----------CHHHHHHHHHHHHHH
T ss_pred --------------------------------hhHHHHHHhhcCe----eEeee-----------cchhHHHHHHHHHhh
Confidence 0123333343210 11111 123333467788888
Q ss_pred hhhcCChhhHHHHHHHHHHHhcCCchhhh------CcHHHHHHhhc-CCCHHHHHHHHHHHHhh
Q 041643 415 IHEESDAMLQTPAIRSIGCLAKTFPAKEK------RMIGPLVALLS-NRNVDVATEAVIALSKF 471 (576)
Q Consensus 415 L~~~~~~~lq~~a~~aLgnLa~~~~~~~~------~~I~~LV~LL~-~~~~~V~~eAa~AL~nl 471 (576)
|...+ ..++..++-.+.|+++-..++.. ..+|.|-+... ..++++++-|..|+.-+
T Consensus 260 l~~~~-~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 260 LNERE-TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HTSSS-HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hccCc-chhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 87654 77888999999999997665432 34555555543 56899999888888755
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=88.20 E-value=3.5 Score=47.90 Aligned_cols=100 Identities=12% Similarity=0.015 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHhhcCcccHHHHH---hcCCH-HHHH----HHHccC--CChHHHHHHHHHHHHhhcCCchHHHHH
Q 041643 174 GQIKSRVDAANELASLARDNNRNRKIIV---EEGGI-LPLL----KLLKEA--ASPDAQTAAANALFNIATDQETVRFIV 243 (576)
Q Consensus 174 G~~e~k~~AA~~L~~La~~~~~~~~~I~---~~GgI-ppLV----~LL~~g--~~~~~q~~AA~AL~nLa~~~~~~~~iv 243 (576)
.+-..|+-|...++.++........-+. ..--+ +.|+ ..|.+. .++.++..|+|+|+..+..- ... .
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~ 493 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--Q 493 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--H
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--H
Confidence 3456777788888888743110000000 00022 2222 234555 13899999999999998742 111 1
Q ss_pred HcCCHHHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643 244 DVLGVPIIVSVLGEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 244 ~~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
-...++.+++.|.+.+..|+..|++||.+++..
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 234678889889888889999999999999863
No 87
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=88.06 E-value=1.4 Score=45.52 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCC--CC
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPD--NF 477 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~--n~ 477 (576)
++++..|++++.+++ ...|.-+++|+++|--.... .....|.-|+.++.+....|.+-|-.-|..|+... |+
T Consensus 159 ~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~ 237 (339)
T 3dad_A 159 SEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA 237 (339)
T ss_dssp TTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred hccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc
Confidence 456788999998876 78899999999999643111 12346788888999888999999888888886322 21
Q ss_pred CCH-HHHHHHHHCCC---cHhHHHhhc---cChh-HHHHHHHHHHHHhcccCchH
Q 041643 478 NRS-EHSKAIIEFDG---VPPLMRLLK---ISDR-AQVHGLVFLCYLALSAGNSK 524 (576)
Q Consensus 478 ~~~-~~~~~Iv~~gg---i~~Lv~LL~---~~d~-vq~~A~~~L~~lal~~~~~~ 524 (576)
.-. ...+.+....| ...|+.+|. ++|. +|.+|+.++..+..+.++.+
T Consensus 238 ~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d 292 (339)
T 3dad_A 238 PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQD 292 (339)
T ss_dssp HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHH
T ss_pred hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChh
Confidence 000 01111222334 778889997 5666 89999998877766777655
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=85.55 E-value=18 Score=35.23 Aligned_cols=179 Identities=10% Similarity=0.044 Sum_probs=103.2
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhhcCCch---HHHHH-HcC-CHHHHHHhhcCCChhHHHHHHHHHHHHhcCCh-----
Q 041643 209 LLKLLKEAASPDAQTAAANALFNIATDQET---VRFIV-DVL-GVPIIVSVLGEAPVKVQVAVANLVARMAELDS----- 278 (576)
Q Consensus 209 LV~LL~~g~~~~~q~~AA~AL~nLa~~~~~---~~~iv-~~G-avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~----- 278 (576)
|-+-|.+-+ =..+.+|...|..+-..... ..... .-+ .++.+-+.+.+.+..++..+..+|..++....
T Consensus 14 l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 555666666 67777787777766543211 11111 123 35567778888899999999999988874311
Q ss_pred HHHHHHHhcCCchhHHHh-hccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCC
Q 041643 279 IAQEEFVRENVTRSLISL-LCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELET 357 (576)
Q Consensus 279 ~~r~~i~~~g~I~~LV~L-L~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d 357 (576)
.......-...+|.|+.- |.+ ..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~--------------------------------------------------------~k 116 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTS--------------------------------------------------------SR 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSC--------------------------------------------------------CC
T ss_pred cchhHHHHHHHHHHHHHHHhcC--------------------------------------------------------cc
Confidence 111111111234444432 211 01
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 041643 358 PEVKAKVRIACAEALWKLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKT 437 (576)
Q Consensus 358 ~~vk~~~k~~Aa~ALw~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~ 437 (576)
+. ++..|..+|-.++..... ...+++.++..+.+ .++.++..++..|.++...
T Consensus 117 ~~----~~~~a~~~l~~~~~~~~~----------------------~~~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 117 AT----TKTQSMSCILSLCGLDTS----------------------ITQSVELVIPFFEK-KLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HH----HHHHHHHHHHHHHHTSSS----------------------SHHHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHhcCc----------------------HHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHH
Confidence 11 334566666555432110 01345666666665 4589998898888888765
Q ss_pred Cchh--h-----hCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643 438 FPAK--E-----KRMIGPLVALLSNRNVDVATEAVIALSKF 471 (576)
Q Consensus 438 ~~~~--~-----~~~I~~LV~LL~~~~~~V~~eAa~AL~nl 471 (576)
|... . ..+++.+..+|.+++.+|+..|...+..+
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4321 1 12456788889999999999999888766
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.45 E-value=15 Score=42.47 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHH---c--cCCChHHHHHHHHHHHHhhcC-CchHHHHHHcCCH
Q 041643 175 QIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLL---K--EAASPDAQTAAANALFNIATD-QETVRFIVDVLGV 248 (576)
Q Consensus 175 ~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL---~--~g~~~~~q~~AA~AL~nLa~~-~~~~~~iv~~Gav 248 (576)
+-..++-|...|+.++..-.... ...+|.++.+| . +.. +.++..|.|+|+.++.. .++...+ ...+
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~-~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLN-VKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSC-HHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccC-HHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 44577778888888875422211 23456666655 2 225 88999999999998863 1221111 1346
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643 249 PIIVSVLGEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 249 p~LV~lL~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
+.|+..| + ..++..|++++.+++..
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRD 573 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence 6777777 3 67899999999999953
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=83.05 E-value=36 Score=38.99 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh---cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhHHH
Q 041643 219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL---GEAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSLIS 295 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL---~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~LV~ 295 (576)
...++.|.++|+.++....... ..-++.++.+| .++++.++..++|+++.++..-....+ .. ...++.|+.
T Consensus 463 w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~ 536 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLH 536 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHH
Confidence 6778899999999997532110 11233333333 335678999999999988742111101 10 122222222
Q ss_pred hhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHh
Q 041643 296 LLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALWKL 375 (576)
Q Consensus 296 LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw~L 375 (576)
.|. ++. ++..|+.|+.++
T Consensus 537 ~l~----------------------------------------------------------~~~----V~~~A~~al~~l 554 (963)
T 2x19_B 537 ALG----------------------------------------------------------NPE----LSVSSVSTLKKI 554 (963)
T ss_dssp HTT----------------------------------------------------------CGG----GHHHHHHHHHHH
T ss_pred HhC----------------------------------------------------------Cch----HHHHHHHHHHHH
Confidence 221 122 356899999999
Q ss_pred hcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHhcCCc-hhh----hCcHHHH
Q 041643 376 SKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES-DAMLQTPAIRSIGCLAKTFP-AKE----KRMIGPL 449 (576)
Q Consensus 376 a~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~-~~~lq~~a~~aLgnLa~~~~-~~~----~~~I~~L 449 (576)
+..... .+ .|-...+++.|..++.+.+ +...+.....++|.++...+ +.. ..+++|+
T Consensus 555 ~~~~~~--------------~l---~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l 617 (963)
T 2x19_B 555 CRECKY--------------DL---PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPY 617 (963)
T ss_dssp HHHTGG--------------GC---TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH--------------HH---HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 853211 12 2345577888888887533 35678888999999986554 211 1356666
Q ss_pred HHhh
Q 041643 450 VALL 453 (576)
Q Consensus 450 V~LL 453 (576)
...+
T Consensus 618 ~~~l 621 (963)
T 2x19_B 618 IQQL 621 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 91
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=81.67 E-value=0.78 Score=45.17 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=27.2
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 041643 410 QLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALS 469 (576)
Q Consensus 410 ~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~ 469 (576)
.|..++.+.+ ..+...++..++ .+.|..| ++.+..|++.|+.+|+
T Consensus 198 ~L~~Ll~D~d-~~VR~~aa~~l~-------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 198 DLLELLHDPD-WTVRLAAVEHAS-------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGGCSS-HHHHHHHHHHSC-------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHcCCC-HHHHHHHHHcCC-------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3455565544 667766655433 3445444 8888888888876654
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=74.66 E-value=49 Score=38.06 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhh---c--CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCchhH
Q 041643 219 PDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVL---G--EAPVKVQVAVANLVARMAELDSIAQEEFVRENVTRSL 293 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL---~--s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~~g~I~~L 293 (576)
-..++.|..+|+.++....... ...++.++.++ . ++++.++..++|+|+.++..-.. ....++++
T Consensus 478 w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~------~~~~l~~v 547 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME------NPAYIPPA 547 (971)
T ss_dssp CHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----------CHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc------CHHHHHHH
Confidence 5678899999999987533211 12344444433 2 34788999999999998842111 11345555
Q ss_pred HHhhccccccCCCcchhhhhHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHHH
Q 041643 294 ISLLCMDIALDLPKPESAKTTIHSLVQMKKEMTEKSTNVTNNSDGSSRGGHGQHYNKKDRELETPEVKAKVRIACAEALW 373 (576)
Q Consensus 294 V~LL~~~t~~~~~~~i~~~~si~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~d~~vk~~~k~~Aa~ALw 373 (576)
+..|-.+ + |+. ++..|++|+.
T Consensus 548 l~~l~~~--------------l-----------------------------------------~~~----v~~~A~~al~ 568 (971)
T 2x1g_F 548 INLLVRG--------------L-----------------------------------------NSS----MSAQATLGLK 568 (971)
T ss_dssp HHHHHHH--------------H-----------------------------------------HSS----CHHHHHHHHH
T ss_pred HHHHHHH--------------h-----------------------------------------ChH----HHHHHHHHHH
Confidence 5544110 0 011 3468999999
Q ss_pred HhhcCCcccchhcccchHHHHhhhccCchhHHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHhcCCchhh-----hCcHH
Q 041643 374 KLSKGCLLSLWSAESNAELRRSAFKTNSPAAKAVLDQLLRLIHEES-DAMLQTPAIRSIGCLAKTFPAKE-----KRMIG 447 (576)
Q Consensus 374 ~La~g~~~~Iavae~~~~lrr~a~k~~s~a~~~vV~~Ll~lL~~~~-~~~lq~~a~~aLgnLa~~~~~~~-----~~~I~ 447 (576)
+|+..... .+ .|-...+++.|..++.+.+ +...+...+.++|.++...+..+ ...++
T Consensus 569 ~l~~~~~~---------~l--------~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~ 631 (971)
T 2x1g_F 569 ELCRDCQL---------QL--------KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVS 631 (971)
T ss_dssp HHHHHCHH---------HH--------HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHH---------hc--------cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99853211 22 2345567788888887642 25778889999999987543111 13456
Q ss_pred HHHHhh----cCC--CHHHHHHHHHHHHhh
Q 041643 448 PLVALL----SNR--NVDVATEAVIALSKF 471 (576)
Q Consensus 448 ~LV~LL----~~~--~~~V~~eAa~AL~nl 471 (576)
|++..+ +.. +.+-......+|..+
T Consensus 632 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 632 PCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 666544 332 343444555555544
No 93
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=74.50 E-value=7.2 Score=46.10 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHHhhcCccc--HHHHHhcCCHHHHHHHHccCCC----hHHHHHHHHHHHHhhcCCchHHHHHHcCCH
Q 041643 175 QIKSRVDAANELASLARDNNRN--RKIIVEEGGILPLLKLLKEAAS----PDAQTAAANALFNIATDQETVRFIVDVLGV 248 (576)
Q Consensus 175 ~~e~k~~AA~~L~~La~~~~~~--~~~I~~~GgIppLV~LL~~g~~----~~~q~~AA~AL~nLa~~~~~~~~iv~~Gav 248 (576)
+-..++.+..++++++..-++. ...+ ...+|.|+.+++.... ...+..++|+|+..+.--....... ...+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFV--VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHH--HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHH
Confidence 5677888899999988643322 2223 2378999999864210 3344567788877665211111111 2244
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 041643 249 PIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285 (576)
Q Consensus 249 p~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~ 285 (576)
..|++.|.+.+++++..|++++.+|+. +|+..+.
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~ 576 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFV 576 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 556666666778999999999999995 4666664
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=70.13 E-value=13 Score=43.96 Aligned_cols=112 Identities=10% Similarity=0.080 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhcCC--hh--hHHHHHHHHHHHhcCCchhhhCcHHH----HHHhhcCCCHHHHHHHHHHHHhhcCCCC
Q 041643 405 KAVLDQLLRLIHEESD--AM--LQTPAIRSIGCLAKTFPAKEKRMIGP----LVALLSNRNVDVATEAVIALSKFVSPDN 476 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~--~~--lq~~a~~aLgnLa~~~~~~~~~~I~~----LV~LL~~~~~~V~~eAa~AL~nla~~~n 476 (576)
..+++.|+.+.++... +. +...++.+||..++-.. .....++| |+..|...++.|+..|+||+.+++..
T Consensus 494 ~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~-- 570 (1023)
T 4hat_C 494 VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK-- 570 (1023)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--
Confidence 3567777777753111 22 33345578887765332 12234555 44445667789999999999999832
Q ss_pred CCCHHHHHHHHH--CCC----cHhHHHhhcc----Chh-HHHHHHHHHHHHhcccCchH
Q 041643 477 FNRSEHSKAIIE--FDG----VPPLMRLLKI----SDR-AQVHGLVFLCYLALSAGNSK 524 (576)
Q Consensus 477 ~~~~~~~~~Iv~--~gg----i~~Lv~LL~~----~d~-vq~~A~~~L~~lal~~~~~~ 524 (576)
-++.++. .|- ++.+++-+.. -+. .......+++.+..+.++.+
T Consensus 571 -----c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 571 -----CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp -----HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred -----HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 1233332 111 2333332221 122 33457778888877777654
No 95
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=67.02 E-value=36 Score=39.36 Aligned_cols=91 Identities=10% Similarity=0.044 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHhcCCchhh---h------CcHHHHHH----hhcCC---CHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 421 AMLQTPAIRSIGCLAKTFPAKE---K------RMIGPLVA----LLSNR---NVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~~---~------~~I~~LV~----LL~~~---~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
-..+..|+.++|.++......+ + .+.+.|++ .|++. ++-++..|+|+|+.++.. .++++-.
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~~~l~ 495 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ---LTKAQLI 495 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh---CCHHHHH
Confidence 4577889999999986432111 1 33444443 24555 888999999999999853 2333322
Q ss_pred HHHHCCCcHhHHHhhccChh-HHHHHHHHHHHHhcc
Q 041643 485 AIIEFDGVPPLMRLLKISDR-AQVHGLVFLCYLALS 519 (576)
Q Consensus 485 ~Iv~~ggi~~Lv~LL~~~d~-vq~~A~~~L~~lal~ 519 (576)
. .++.+++.|...+. |+..|+.++.+++.+
T Consensus 496 ~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 496 E-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp H-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 2 35677777776655 899999999998754
No 96
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=66.99 E-value=20 Score=38.59 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=68.5
Q ss_pred HhcCCHHHHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHH
Q 041643 171 IQMGQIKSRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPI 250 (576)
Q Consensus 171 L~~G~~e~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~ 250 (576)
...|+...|.-||.-+...-+.=++. .+-+|..++.|.++.+ ..++..|.+.|..++.+ ++...|+ .+
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l-----~~~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~-~~i~kia-----Dv 104 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPEL-----ADSAINAQLDLCEDED-VSIRRQAIKELPQFATG-ENLPRVA-----DI 104 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGG-----HHHHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT-TCHHHHH-----HH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh-hhhhhHH-----HH
Confidence 35678999999999988776654443 2347899999999988 99999999999999998 7766554 58
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHh
Q 041643 251 IVSVLGEAPVKVQVAVANLVARMA 274 (576)
Q Consensus 251 LV~lL~s~~~~vq~~Aa~aL~~LA 274 (576)
|++||++.+..-...+-++|..|-
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHH
Confidence 999998876443344444444433
No 97
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=66.04 E-value=22 Score=34.13 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=74.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHh---hcCcccHHHHHhcCCHHHHHHHHcc----CC------ChHHHHHHHHHHHHhhc
Q 041643 168 ISTIQMGQIKSRVDAANELASLA---RDNNRNRKIIVEEGGILPLLKLLKE----AA------SPDAQTAAANALFNIAT 234 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La---~~~~~~~~~I~~~GgIppLV~LL~~----g~------~~~~q~~AA~AL~nLa~ 234 (576)
|..|+++....+ -...|.+|. +.++..+..=...||+..|+++|.. +. ....|.....||..|-.
T Consensus 6 i~~L~~~~~~~~--~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 6 IQELRSGLRDMH--LLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHTTTCCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhccchHH--HHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 677777742222 233333332 3233333322357899999999863 11 14568899999999988
Q ss_pred CCchHHHHHH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 041643 235 DQETVRFIVD-VLGVPIIVSVLGEAPVKVQVAVANLVARMAELD 277 (576)
Q Consensus 235 ~~~~~~~iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~ 277 (576)
++.....+++ .+++..++..|.++...++..+...|+.++..+
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 7777777765 567999999999888999999999998888654
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=61.57 E-value=27 Score=40.83 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhcCCchhh---hCcHHHHHHhhcCCCHHHHHHHHHHHHhhcC
Q 041643 423 LQTPAIRSIGCLAKTFPAKE---KRMIGPLVALLSNRNVDVATEAVIALSKFVS 473 (576)
Q Consensus 423 lq~~a~~aLgnLa~~~~~~~---~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~ 473 (576)
++..++.++|..++-+.... ..+++.|+..|.+.++.|+..||+|+.+|+.
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34346677887765433211 1356677778888899999999999999984
No 99
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=60.99 E-value=23 Score=35.15 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSK 484 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~ 484 (576)
..+++.|+.=+.+.. +.+...+-..+-.+....+ ...+.+.+++-+++++..++.++...|..+-.... ..
T Consensus 131 ~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~~--~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G---~~--- 201 (266)
T 2of3_A 131 SAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVVG--PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG---IS--- 201 (266)
T ss_dssp HHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHC--HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC---SG---
T ss_pred HHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC---CC---
Confidence 356777776555443 5565555444444443222 34678889999999999999999988887752111 01
Q ss_pred HHHHCCCc---HhHHHhhccChh-HHHHHHHHHHHHhcccCch
Q 041643 485 AIIEFDGV---PPLMRLLKISDR-AQVHGLVFLCYLALSAGNS 523 (576)
Q Consensus 485 ~Iv~~ggi---~~Lv~LL~~~d~-vq~~A~~~L~~lal~~~~~ 523 (576)
...++ |.+..++...|. |+..|+.++..+=.+.|+.
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 23478 999999998887 8888888887665566664
No 100
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=58.92 E-value=30 Score=40.90 Aligned_cols=91 Identities=14% Similarity=0.242 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcC-------CCHHHHHHHHHHHHhhcCCCCC
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSN-------RNVDVATEAVIALSKFVSPDNF 477 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~-------~~~~V~~eAa~AL~nla~~~n~ 477 (576)
+.+.+.|.+.++.++ +.-..-++++|||+.. + ..|+.|..+|.. ....|+..|.|||.++++..
T Consensus 439 ~~i~~~l~~~~~~~~-~~~~~~~LkaLGN~g~--p----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-- 509 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAK-EEEIVLALKALGNAGQ--P----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-- 509 (1056)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTC--G----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--
T ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHhhccCC--h----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--
Confidence 346677777777766 6667789999999963 2 368888888742 24679999999999998642
Q ss_pred CCHHHHHHHHHCCCcHhHHHhhccC--hh-HHHHHHHHHH
Q 041643 478 NRSEHSKAIIEFDGVPPLMRLLKIS--DR-AQVHGLVFLC 514 (576)
Q Consensus 478 ~~~~~~~~Iv~~ggi~~Lv~LL~~~--d~-vq~~A~~~L~ 514 (576)
++..+. .|+++..+. +. ++..|+..|.
T Consensus 510 --p~~v~~--------il~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 510 --PRKVQE--------IVLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp --HHHHHH--------HHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred --hHHHHH--------HHHHHhcCCCCChHHHHHHHHHHH
Confidence 232332 367777432 33 6777777553
No 101
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=58.46 E-value=1.6e+02 Score=34.78 Aligned_cols=103 Identities=19% Similarity=0.096 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhc---CcccHHHHHhcCCHHHHHHHH----ccCCChHHHHHHHHHH
Q 041643 161 LAWVWSFISTIQMG----QIKSRVDAANELASLARD---NNRNRKIIVEEGGILPLLKLL----KEAASPDAQTAAANAL 229 (576)
Q Consensus 161 ~~~v~~li~~L~~G----~~e~k~~AA~~L~~La~~---~~~~~~~I~~~GgIppLV~LL----~~g~~~~~q~~AA~AL 229 (576)
..++..+..+++++ +...+..+.-++++|.+. +...+ ....|+++.++| .+++ .+-+.-+..||
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~-~~~~~~~LkaL 464 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAK-EEEIVLALKAL 464 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHh
Confidence 33444445555543 344555555556555431 11110 112356666665 4566 77788999999
Q ss_pred HHhhcCCchHHHHHHcCCHHHHHHhhcC-------CChhHHHHHHHHHHHHhcCCh
Q 041643 230 FNIATDQETVRFIVDVLGVPIIVSVLGE-------APVKVQVAVANLVARMAELDS 278 (576)
Q Consensus 230 ~nLa~~~~~~~~iv~~Gavp~LV~lL~s-------~~~~vq~~Aa~aL~~LA~~~~ 278 (576)
+|+... ..++.|..++.. ....++..|.+||.+++...|
T Consensus 465 GN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p 510 (1056)
T 1lsh_A 465 GNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP 510 (1056)
T ss_dssp HHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH
T ss_pred hccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch
Confidence 999862 367788888742 245788899999999996654
No 102
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=56.19 E-value=41 Score=38.54 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhh---cCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHH
Q 041643 421 AMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALL---SNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMR 497 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL---~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~ 497 (576)
-.....++.++|.++......+...++.++..| ...++.|+..++|+|+.++.- . .+|.+.+ ...++.|++
T Consensus 463 w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~---l-~~~~~~l--~~vl~~l~~ 536 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEW---L-ADHPVMI--NSVLPLVLH 536 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHH---H-HHCHHHH--TTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH---H-HhCHHHH--HHHHHHHHH
Confidence 456778999999999866543445666666654 345788999999999999731 1 1223333 356777777
Q ss_pred hhccChhHHHHHHHHHHHHhcc
Q 041643 498 LLKISDRAQVHGLVFLCYLALS 519 (576)
Q Consensus 498 LL~~~d~vq~~A~~~L~~lal~ 519 (576)
.|.. ..++..|+.++..++..
T Consensus 537 ~l~~-~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 537 ALGN-PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HTTC-GGGHHHHHHHHHHHHHH
T ss_pred HhCC-chHHHHHHHHHHHHHHH
Confidence 7754 34888888888888743
No 103
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=55.44 E-value=74 Score=32.97 Aligned_cols=109 Identities=15% Similarity=0.230 Sum_probs=73.9
Q ss_pred HHHHhcCCHHHHH-HHHHHHHHHhhcCcccH-HHHHhcCCHHHHHHHHcc----------CCChHHHHHHHHHHHHhhcC
Q 041643 168 ISTIQMGQIKSRV-DAANELASLARDNNRNR-KIIVEEGGILPLLKLLKE----------AASPDAQTAAANALFNIATD 235 (576)
Q Consensus 168 i~~L~~G~~e~k~-~AA~~L~~La~~~~~~~-~~I~~~GgIppLV~LL~~----------g~~~~~q~~AA~AL~nLa~~ 235 (576)
|..|+++....|. .....|.---+.++..+ +..+ .+|+..|+++|.. ......|.....||..|-.+
T Consensus 72 i~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~ 150 (383)
T 3eg5_B 72 IQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 150 (383)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc
Confidence 6777877433332 22223322112233333 2333 7899999999952 11146788999999999887
Q ss_pred CchHHHHHH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 041643 236 QETVRFIVD-VLGVPIIVSVLGEAPVKVQVAVANLVARMAELD 277 (576)
Q Consensus 236 ~~~~~~iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~ 277 (576)
......++. ...|..|+..|.+....++..|...|+.++..+
T Consensus 151 ~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 151 KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 777776765 567999999999999999999999999988654
No 104
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=48.26 E-value=1.8e+02 Score=27.49 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC-C-CH------HHHHHHH
Q 041643 421 AMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNF-N-RS------EHSKAII 487 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~-~-~~------~~~~~Iv 487 (576)
.+.+..++++|..|..+.... ....|..|+..|.+.++.+++.|..-|+-++.-... - |. ++.+...
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 456778888888887543221 235688999999999999999988777655532110 0 11 1111223
Q ss_pred HCCCcHhHHHhhccChh--HHHHHHHHHHHHhcccCchH-------HHHhccchhhHhhhh
Q 041643 488 EFDGVPPLMRLLKISDR--AQVHGLVFLCYLALSAGNSK-------ALEQARALNALEGAA 539 (576)
Q Consensus 488 ~~ggi~~Lv~LL~~~d~--vq~~A~~~L~~lal~~~~~~-------~l~~~~~l~~Le~~~ 539 (576)
+..=..++++.|+.++. .+...+.++..+...+++.+ ++.+.|..+.|+.++
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~ 208 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELR 208 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHh
Confidence 34456678888875443 45555555544444444432 566788888887554
No 105
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=44.38 E-value=71 Score=32.06 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHHhhcCcccHHHHHhcC--CHHHHHHHHccCCChHHHHHHHHHHHHhhcCC-c-h-HHHHHHcCCHH
Q 041643 175 QIKSRVDAANELASLARDNNRNRKIIVEEG--GILPLLKLLKEAASPDAQTAAANALFNIATDQ-E-T-VRFIVDVLGVP 249 (576)
Q Consensus 175 ~~e~k~~AA~~L~~La~~~~~~~~~I~~~G--gIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~-~-~-~~~iv~~Gavp 249 (576)
.+.-+.-+.+.+.|+-.. +..+..+...- .++.+...+.+.+ ...|..+|+.+.|+|..- . + .... .-...
T Consensus 161 ~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~n-knl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~ 236 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSN-KNIHIALATLALNYSVCFHKDHNIEGK--AQCLS 236 (304)
T ss_dssp CHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCC-HHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHH
T ss_pred ChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHH
Confidence 455567788899998775 66777766421 2333333444445 889999999999999721 1 0 0110 01344
Q ss_pred HHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHH
Q 041643 250 IIVSVLGE-APVKVQVAVANLVARMAELDSIAQE 282 (576)
Q Consensus 250 ~LV~lL~s-~~~~vq~~Aa~aL~~LA~~~~~~r~ 282 (576)
.+..+++. .+.|.......||++|...+++.++
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~ 270 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQ 270 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHH
Confidence 45555543 5678889999999999976655443
No 106
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=44.20 E-value=1.1e+02 Score=31.70 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHh---hcCcccHHHHHhcCCHHHHHHHHcc----CC------ChHHHHHHHHHHHHhhc
Q 041643 168 ISTIQMGQIKSRVDAANELASLA---RDNNRNRKIIVEEGGILPLLKLLKE----AA------SPDAQTAAANALFNIAT 234 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La---~~~~~~~~~I~~~GgIppLV~LL~~----g~------~~~~q~~AA~AL~nLa~ 234 (576)
|..|+++....+ -...|.+|. +.++..+..=...||+..|+.+|.. +. ....|.....||..|..
T Consensus 10 v~~L~~~~~~~~--~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 10 IQELRSGLRDMH--LLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHTSCCCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhccchHH--HHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 677787743332 122333332 3333333322246899999998852 11 14678899999999988
Q ss_pred CCchHHHHHH-cCCHHHHHHhhcCCChhHHHHHHHHHHHHhcCC
Q 041643 235 DQETVRFIVD-VLGVPIIVSVLGEAPVKVQVAVANLVARMAELD 277 (576)
Q Consensus 235 ~~~~~~~iv~-~Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~ 277 (576)
+......++. .++|..++..|.+....++..+...|+.++..+
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 8777776665 567999999998888899999998888888654
No 107
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=44.11 E-value=2.8e+02 Score=28.47 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHhcCCchh-----hhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCC--CH------HHHHHHH
Q 041643 421 AMLQTPAIRSIGCLAKTFPAK-----EKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFN--RS------EHSKAII 487 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~-----~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~--~~------~~~~~Iv 487 (576)
...+..|++||..|..+.... ....|..|+..|.+.++.++..+..-|+-+|.-+... |. ++.+...
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 456788888888887543221 2356889999999999999999876666554321100 11 1111223
Q ss_pred HCCCcHhHHHhhccChh--HHHHHHHHHHHHhcccCchH-------HHHhccchhhHhhh
Q 041643 488 EFDGVPPLMRLLKISDR--AQVHGLVFLCYLALSAGNSK-------ALEQARALNALEGA 538 (576)
Q Consensus 488 ~~ggi~~Lv~LL~~~d~--vq~~A~~~L~~lal~~~~~~-------~l~~~~~l~~Le~~ 538 (576)
+..=..+||..|+.++. .+...+.++..+...+++.. ++...|..+.|+.+
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~L 211 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL 211 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 44456678888875543 45555555544444445432 56678888887744
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=44.04 E-value=2.9e+02 Score=28.46 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHHHHhcCCch-----hhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCC-CC-CHH------HHHHHH
Q 041643 421 AMLQTPAIRSIGCLAKTFPA-----KEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDN-FN-RSE------HSKAII 487 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~-----~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n-~~-~~~------~~~~Iv 487 (576)
...+.-+++||..|..+... .....|..|+..|.+..+.+++.|..-|+-+|.-.. .- |.- +-+...
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~ 213 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 213 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhC
Confidence 46778888888888643322 123568999999999999999999988887763221 00 111 111223
Q ss_pred HCCCcHhHHHhhccChh--HHHHHHHHHHHHhcccCchH-------HHHhccchhhHhhhh
Q 041643 488 EFDGVPPLMRLLKISDR--AQVHGLVFLCYLALSAGNSK-------ALEQARALNALEGAA 539 (576)
Q Consensus 488 ~~ggi~~Lv~LL~~~d~--vq~~A~~~L~~lal~~~~~~-------~l~~~~~l~~Le~~~ 539 (576)
+..-..+++..|+.++. .+..++.++..+....++.+ ++.+.|..+.|+.+.
T Consensus 214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr 274 (383)
T 3eg5_B 214 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELR 274 (383)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHh
Confidence 44567888998886533 45555555544444444433 566788888887543
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=42.03 E-value=1.9e+02 Score=28.51 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhcCc-ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHH-------H-HcCCH
Q 041643 178 SRVDAANELASLARDNN-RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFI-------V-DVLGV 248 (576)
Q Consensus 178 ~k~~AA~~L~~La~~~~-~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~i-------v-~~Gav 248 (576)
.|.-+...++.|.+.++ +....+.+.+.||..++.++.|+ .-.|.-|+..+.+|-.+...-..+ - =....
T Consensus 118 LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs-elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL 196 (268)
T 2fv2_A 118 LRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS-ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMIL 196 (268)
T ss_dssp HHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc-HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHH
Confidence 34566667787776543 23344557788999999999999 999999999999988765431111 0 01123
Q ss_pred HHHHH-hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh
Q 041643 249 PIIVS-VLGEAPVKVQVAVANLVARMAELDSIAQEEFVR 286 (576)
Q Consensus 249 p~LV~-lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~~ 286 (576)
..+|. +.+.++.++-.....+-..|+. ++..|+.+.+
T Consensus 197 ~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~ 234 (268)
T 2fv2_A 197 GKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQ 234 (268)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 33333 3356788899999999999994 6888887774
No 110
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=41.37 E-value=9.4 Score=44.51 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=67.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCchh------hHHHHhHH-HHHHHHHH--HHH---HchhcCccchh
Q 041643 45 SSKQECAELRKQVERLSQMLRSCVRLATSSQPLYERPI------RRVAADVA-KNLDRSLT--LVR---RCKHAGVLRHV 112 (576)
Q Consensus 45 ~f~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~-~t~~~a~~--~~~---~C~~~g~~~r~ 112 (576)
.+..+|.++..|+++......+..-.....|+-|--|+ -||+..++ .||||.++ |+. .||-|+.-...
T Consensus 859 ~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 859 EFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 45678888999998887776655543334567777784 56777787 69999999 665 57778776666
Q ss_pred hhccccccHHHHHHHHHhhhc
Q 041643 113 FSITTNADFKKVFSLLESSIG 133 (576)
Q Consensus 113 ~~i~~~~~l~~l~~~L~~~~~ 133 (576)
..++|+-+++..+..++...+
T Consensus 939 ~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 939 EDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp GGCEECHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 788999999999999976443
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=39.28 E-value=97 Score=33.39 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHCCCcHhHHHhhc
Q 041643 421 AMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKFVSPDNFNRSEHSKAIIEFDGVPPLMRLLK 500 (576)
Q Consensus 421 ~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nla~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~ 500 (576)
+....-|..-|...-+.|++-+..+|-.+++|..+.+..|++.|...|-.+|-+ ++...|+ ..|+|||.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kia-----DvL~QlLq 110 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVA-----DILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHH-----HHHHHHHh
Confidence 566666777777777788877778888888888888888888888888888754 2344443 46788888
Q ss_pred cChh
Q 041643 501 ISDR 504 (576)
Q Consensus 501 ~~d~ 504 (576)
+.+.
T Consensus 111 tdd~ 114 (507)
T 3u0r_A 111 TDDS 114 (507)
T ss_dssp CCCH
T ss_pred ccch
Confidence 7653
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=38.57 E-value=2.7e+02 Score=26.97 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=29.5
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 041643 247 GVPIIVSVLGEAPVKVQVAVANLVARMAELDSIAQEEFV 285 (576)
Q Consensus 247 avp~LV~lL~s~~~~vq~~Aa~aL~~LA~~~~~~r~~i~ 285 (576)
++|.+-.+..+++.-+|...+|+|-.++..+|+--..+.
T Consensus 179 ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 179 AIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 356666666777888999999999999998887544433
No 113
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.40 E-value=2.7e+02 Score=26.52 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcCccc--HH-HHHhcCCH-HHHHHHHccCCChHHHHHHHHHHHHhhcCCc-----h
Q 041643 168 ISTIQMGQIKSRVDAANELASLARDNNRN--RK-IIVEEGGI-LPLLKLLKEAASPDAQTAAANALFNIATDQE-----T 238 (576)
Q Consensus 168 i~~L~~G~~e~k~~AA~~L~~La~~~~~~--~~-~I~~~GgI-ppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~-----~ 238 (576)
-.+|.+-+=..|.+|...|..+...++.. .. .+..-+.+ +.+-+.+.+.+ ..++..|..+|..++..-. .
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhccc
Confidence 46888888899999999887766532211 11 11123443 44455776666 9999999999998876321 1
Q ss_pred H-HHHHHcCCHHHHHH-hhcCCChhHHHHHHHHHHHHhc
Q 041643 239 V-RFIVDVLGVPIIVS-VLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 239 ~-~~iv~~Gavp~LV~-lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
. ....-...+|.|++ .|.++...++..+..++..++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 1 12223446788885 5788888888888888777664
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=33.73 E-value=22 Score=34.68 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHHHHHccCCChHHHHHHHHHH-----HHhhcCC--chHHHHHHcCCHHHHHHhhcCCChhHHHHHHHHH
Q 041643 208 PLLKLLKEAASPDAQTAAANAL-----FNIATDQ--ETVRFIVDVLGVPIIVSVLGEAPVKVQVAVANLV 270 (576)
Q Consensus 208 pLV~LL~~g~~~~~q~~AA~AL-----~nLa~~~--~~~~~iv~~Gavp~LV~lL~s~~~~vq~~Aa~aL 270 (576)
.|..|+++.+ +.++..++..+ ..+..++ +.|..++..-..+.|+.++.+++..|+..++..+
T Consensus 150 ~l~~l~~D~d-~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 150 RLFRFMRDED-RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp GGGGTTTCSC-HHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHHHHcCCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3444455445 66666666542 1222322 2355555555667777777777777777776654
No 115
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=30.66 E-value=1.1e+02 Score=35.80 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHhhcCccc-HHHHHhcCCHHHHHHHHcc-----CCChHHHHHHHHHHHHhhcCCchHHHHHHcCCH
Q 041643 175 QIKSRVDAANELASLARDNNRN-RKIIVEEGGILPLLKLLKE-----AASPDAQTAAANALFNIATDQETVRFIVDVLGV 248 (576)
Q Consensus 175 ~~e~k~~AA~~L~~La~~~~~~-~~~I~~~GgIppLV~LL~~-----g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gav 248 (576)
+-..++.|..+++.++..-... .+... ...++.|+.+... +. +..+..+.|+++..+..-....... ..++
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~-~~v~~~~~~~lgry~~~~~~~~~~l-~~vl 542 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWNFL-RTVI 542 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHH-HHHHHHHHHHHHHCHHHHHHCHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence 4567788888888887432111 01100 1133444443321 22 4455567888887765211111122 2357
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhcC
Q 041643 249 PIIVSVLGEAPVKVQVAVANLVARMAEL 276 (576)
Q Consensus 249 p~LV~lL~s~~~~vq~~Aa~aL~~LA~~ 276 (576)
+.|++.|.+++..++..|++++.+++..
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7788888888899999999999999963
No 116
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.20 E-value=71 Score=30.54 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=66.7
Q ss_pred ccccHHHHHHHHHh-hhcchHHHhhhcccCccccCCCCCCCcchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-c
Q 041643 117 TNADFKKVFSLLES-SIGDMRWLLTIFDSDEVNLSLPPIASNDPILAWVWSFISTIQMGQIKSRVDAANELASLARDN-N 194 (576)
Q Consensus 117 ~~~~l~~l~~~L~~-~~~~~~~ll~~s~~~~~~~~lp~ia~~~~i~~~v~~li~~L~~G~~e~k~~AA~~L~~La~~~-~ 194 (576)
..+.|+.++....+ .+.+..|-+.+-..+.+. -.+....++++ -+..+|+.+++..+..|..-|-.+..+. +
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~--~~~~~~k~a~r----al~krl~~~n~~v~l~aL~LLe~~vkNcG~ 78 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIR--QGDTQAKYAVN----SIKKKVNDKNPHVALYALEVMESVVKNCGQ 78 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHH--TTSSCHHHHHH----HHHHHHTCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHh--CCCccHHHHHH----HHHHHHcCCCHHHHHHHHHHHHHHHHhcch
Confidence 34677777777743 334445544443322111 01222244444 4477889999999988887777766542 3
Q ss_pred ccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhh
Q 041643 195 RNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIA 233 (576)
Q Consensus 195 ~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa 233 (576)
.....|....-+.-|+++++..+.+.+|+.....|...+
T Consensus 79 ~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 79 TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 345667666667788888876554677777766666655
No 117
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=29.91 E-value=93 Score=30.66 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcH---HHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643 406 AVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMI---GPLVALLSNRNVDVATEAVIALSKF 471 (576)
Q Consensus 406 ~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I---~~LV~LL~~~~~~V~~eAa~AL~nl 471 (576)
.+.+.++.-+.+ .+....+-|+..++++-..+.....+.+ |.+..+|.+++..|+..|..++..+
T Consensus 167 ~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 167 KMTPMLLDALKS-KNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467778877755 4588889999999888654433334678 9999999999999999998888744
No 118
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=29.14 E-value=44 Score=37.07 Aligned_cols=84 Identities=20% Similarity=0.083 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCChHHHHHHHHHHHHhhcCCchHHHHHHcCCHHHHHHhhcC
Q 041643 178 SRVDAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAASPDAQTAAANALFNIATDQETVRFIVDVLGVPIIVSVLGE 257 (576)
Q Consensus 178 ~k~~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~~~~q~~AA~AL~nLa~~~~~~~~iv~~Gavp~LV~lL~s 257 (576)
.|+-+|.+|+.+ ..-+.. ...+..|++.+.... =+++..+.-.|.-+ . +--.. --+.++.++.-|++
T Consensus 244 VRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL-~--DLL~~--Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGD-WQVQFSGLIALGYL-K--EFVED--KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSC-HHHHHHHHHHHHHT-G--GGCCC--HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCC-eeehhhhHHHHHHH-H--HHHHH--HHHHHHHHHhhcCC
Confidence 577889999888 543322 344566666555555 77888888888777 2 11111 24568888899999
Q ss_pred CChhHHHHHHHHHHHHh
Q 041643 258 APVKVQVAVANLVARMA 274 (576)
Q Consensus 258 ~~~~vq~~Aa~aL~~LA 274 (576)
.+++|+..||.+|.-++
T Consensus 311 ~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP 327 (800)
T ss_dssp SSHHHHHHHHHHHTTSC
T ss_pred cccHHHHHHHHHhhhhc
Confidence 99999999999999888
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=28.19 E-value=1.9e+02 Score=28.27 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhhcCCCHHHHHHHHHHHHhh
Q 041643 405 KAVLDQLLRLIHEESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALLSNRNVDVATEAVIALSKF 471 (576)
Q Consensus 405 ~~vV~~Ll~lL~~~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL~~~~~~V~~eAa~AL~nl 471 (576)
..+++.++.+..+. +.+++.-.+.-|...++..+.--..+++.|..+|++.++.|.|.+..+.+++
T Consensus 52 ~~~l~~il~~~~~~-~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 52 EEFLESVLSLAHDS-NMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46788888876553 4778877777777776543333346789999999999999999988776644
No 120
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=27.16 E-value=2.2e+02 Score=28.34 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhhcCCchHHHHHHc--CCHHHHHHhhcCCChhHHHHHHHHHHHHhc
Q 041643 219 PDAQTAAANALFNIATDQETVRFIVDV--LGVPIIVSVLGEAPVKVQVAVANLVARMAE 275 (576)
Q Consensus 219 ~~~q~~AA~AL~nLa~~~~~~~~iv~~--Gavp~LV~lL~s~~~~vq~~Aa~aL~~LA~ 275 (576)
+.-|.-+.+.+.|+-.++..+..+... -.++.+...+.+.+..+|..++..+.|+|.
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 777999999999999988887776653 234555555556678899999999999985
No 121
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=24.11 E-value=2.5e+02 Score=27.63 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhcCcccHHHHHhcCCHHHHHHHHccCCC----hHHHHHHHHHHHHhhc--CCchHHHHHHcCCHHHHHHh
Q 041643 181 DAANELASLARDNNRNRKIIVEEGGILPLLKLLKEAAS----PDAQTAAANALFNIAT--DQETVRFIVDVLGVPIIVSV 254 (576)
Q Consensus 181 ~AA~~L~~La~~~~~~~~~I~~~GgIppLV~LL~~g~~----~~~q~~AA~AL~nLa~--~~~~~~~iv~~Gavp~LV~l 254 (576)
+|..-|-.+|++ ++.|...+++.-.--|--+|...+. +-.+-.+-..++.|.+ +++....+.+.+.||...+.
T Consensus 75 naLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 75 NALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 455556677875 7899999987655456666765431 1244566677788887 34566788899999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhcCC
Q 041643 255 LGEAPVKVQVAVANLVARMAELD 277 (576)
Q Consensus 255 L~s~~~~vq~~Aa~aL~~LA~~~ 277 (576)
+..|++-.|..|...+..+-.++
T Consensus 154 me~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSH
T ss_pred HhhccHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888654
No 122
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=21.14 E-value=2.1e+02 Score=33.33 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhh----cCChhhHHHHHHHHHHHhcCCchhhhCcHHHHHHhh-c-----CCCHHHHHHHHHHHHhhc
Q 041643 406 AVLDQLLRLIHE----ESDAMLQTPAIRSIGCLAKTFPAKEKRMIGPLVALL-S-----NRNVDVATEAVIALSKFV 472 (576)
Q Consensus 406 ~vV~~Ll~lL~~----~~~~~lq~~a~~aLgnLa~~~~~~~~~~I~~LV~LL-~-----~~~~~V~~eAa~AL~nla 472 (576)
.+++.|..++++ .+.+.++..++.++|..++-+.. ....+|+++..+ + +.+..|+..|+.++.+|+
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~ 565 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFV 565 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHH
Confidence 466777777651 12378899999999999876543 446777777754 3 456789999999999997
Done!