BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041647
(216 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449441216|ref|XP_004138378.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cucumis
sativus]
Length = 391
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 91/188 (48%), Gaps = 72/188 (38%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTH LTSV VNKTDVV LG+T G
Sbjct: 247 LTHVLTSVRHVNKTDVVTLGTTFG------------------------------------ 270
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETPSLK 122
SLSHIMDASMEDLARCPGI ERKV+ LYDTFHEPFK VVS HP +PETP+
Sbjct: 271 --------SLSHIMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVPETPTQI 322
Query: 123 DVEPSSVNE-------------------------SALSAAFANYADKMGEKKNSSSQKQE 157
+P S NE SALSAAFA YADK+ + S S QE
Sbjct: 323 STKPRSSNEEQDVDGKRIEEDGSQHKKEPKLNVKSALSAAFAKYADKIAK---SGSIPQE 379
Query: 158 TETRIPEN 165
E PE+
Sbjct: 380 KEKGEPES 387
>gi|224130994|ref|XP_002328427.1| predicted protein [Populus trichocarpa]
gi|222838142|gb|EEE76507.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 92/185 (49%), Gaps = 69/185 (37%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
L HALT+V VNKTDVV LGST G
Sbjct: 231 LHHALTTVRRVNKTDVVTLGSTFG------------------------------------ 254
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETPSLK 122
SLS+IMDASMEDLARCPGI ERKVK LYDTFHEPFK VVS HP +P+TP K
Sbjct: 255 --------SLSNIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPVVPQTPVQK 306
Query: 123 DVEPSSVN------------------------ESALSAAFANYA-DKMGEKKNSSSQKQE 157
D EPSSV+ +SALS+AFA A +K+G KK + E
Sbjct: 307 DTEPSSVDEVAEMEMEEANANKHRKKEPELTVKSALSSAFAKCATNKLGNKKFQREKVGE 366
Query: 158 TETRI 162
T T I
Sbjct: 367 TSTAI 371
>gi|449520473|ref|XP_004167258.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cucumis
sativus]
Length = 412
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 90/185 (48%), Gaps = 69/185 (37%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTH LTSV VNKTDVV LG+T G
Sbjct: 246 LTHVLTSVRHVNKTDVVTLGTTFG------------------------------------ 269
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETPSLK 122
SLSHIMDASMEDLARCPGI ERKV+ LYDTFHEPFK VVS HP +PETP+
Sbjct: 270 --------SLSHIMDASMEDLARCPGIGERKVRRLYDTFHEPFKRVVSTHPAVPETPTQI 321
Query: 123 DVEPSSVNE-------------------------SALSAAFANYADKMGEKKNSSSQKQE 157
+P S NE SALSAAFA YADK+ + + +K++
Sbjct: 322 STKPRSSNEEQDVDGKRIEEDGSQHKKEPKLNVKSALSAAFAKYADKIAKSGSIPQEKKK 381
Query: 158 TETRI 162
++
Sbjct: 382 ENLKV 386
>gi|359487720|ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-1-like [Vitis vinifera]
gi|296088298|emb|CBI36743.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 94/190 (49%), Gaps = 69/190 (36%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALT+V VNKTDVV LGST G
Sbjct: 242 LTHALTTVRHVNKTDVVTLGSTFG------------------------------------ 265
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETPSLK 122
SLSHIMDASMEDLARCPGI ERKVK LYDTFHEPFK VV P +PE P
Sbjct: 266 --------SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVPSCPAVPENPVHN 317
Query: 123 DVEPSSVN------------------------ESALSAAFANYADKMGEKKNS-SSQKQE 157
+ EPSSVN +SALSAAFA Y++K+G++ N +K E
Sbjct: 318 NAEPSSVNEVVEVENDVEDASKRRKKEPELTVKSALSAAFAQYSEKIGKRNNRPQGKKHE 377
Query: 158 TETRIPENRS 167
+ PE ++
Sbjct: 378 EKGHAPETKA 387
>gi|255542562|ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
communis]
gi|223548305|gb|EEF49796.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
communis]
Length = 392
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 90/182 (49%), Gaps = 69/182 (37%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALT++ VNKTDVV LGST G
Sbjct: 237 LTHALTTIRHVNKTDVVTLGSTFG------------------------------------ 260
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETPSLK 122
SLS+IMDASMEDLARCPGI ERKVK LYDTFHEPFK VVS HP +PET S K
Sbjct: 261 --------SLSNIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPAVPET-SQK 311
Query: 123 DVEPSSVNE------------------------SALSAAFANYADKMGEKKNSSSQKQET 158
D EP+ V+E SALSAAF+ YA+ ++ + S +
Sbjct: 312 DSEPALVDEVTEVGKGEYDESKWRKKEPELTVKSALSAAFSKYANTFVKRTDKSEGENAG 371
Query: 159 ET 160
ET
Sbjct: 372 ET 373
>gi|356574927|ref|XP_003555594.1| PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein
ERCC-1-like [Glycine max]
Length = 264
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 92/180 (51%), Gaps = 58/180 (32%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALT+V VNKTDVV LG+T G
Sbjct: 135 LTHALTTVRHVNKTDVVTLGTTFGY----------------------------------- 159
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIV-ERKVKCLYDTFHEPFKPVVSRHPPIPET--- 118
L +IM ASMEDLARCPGIV ERKVK L+DTFHEPFK V S IPET
Sbjct: 160 ---------LCNIMGASMEDLARCPGIVGERKVKRLFDTFHEPFKHVESSRQAIPETSVQ 210
Query: 119 --PSLKDVEPSSVNESALSAAFANYADKMGEKKNSSSQKQETETRIPENRSSILAKEAMA 176
P+ E +SALSAAFA Y+ ++G++K++S ++ E SI++KE+ A
Sbjct: 211 NKPASPKKELEVTVKSALSAAFAKYSGRVGKRKSTS--------QVEEKGESIISKESEA 262
>gi|15229933|ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
gi|55976606|sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1;
Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive
7
gi|6729031|gb|AAF27027.1|AC009177_17 putative nucleotide repair protein [Arabidopsis thaliana]
gi|9800490|gb|AAF99316.1|AF276082_1 ERCC1 [Arabidopsis thaliana]
gi|15215614|gb|AAK91352.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
gi|21435979|gb|AAM51569.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
gi|21618171|gb|AAM67221.1| putative nucleotide repair protein [Arabidopsis thaliana]
gi|332640684|gb|AEE74205.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
Length = 410
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 79/172 (45%), Gaps = 73/172 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
L H+LTS+ VNK+DVV LGST G
Sbjct: 260 LNHSLTSIRHVNKSDVVTLGSTFG------------------------------------ 283
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRH-----PPIPE 117
SL+HI+DASMEDLARCPGI ERKVK LYDTFHEPFK S + PPIPE
Sbjct: 284 --------SLAHIIDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPE 335
Query: 118 TPSLKDV------------------------EPSSVNESALSAAFANYADKM 145
P KDV EP ++ALSA FA Y+D++
Sbjct: 336 APVEKDVNSEEPVEEDEDFVEDSRKRKKKEPEPEKTVKTALSAVFARYSDRL 387
>gi|356533598|ref|XP_003535349.1| PREDICTED: DNA excision repair protein ERCC-1-like [Glycine max]
Length = 398
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 95/207 (45%), Gaps = 85/207 (41%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTH+LT+V VNKTDVV LG+T G
Sbjct: 242 LTHSLTTVRHVNKTDVVTLGTTFG------------------------------------ 265
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETP--- 119
SLS+IM ASMEDLARCPGI ERKVK L+DTFHEPFK V S IPET
Sbjct: 266 --------SLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAIPETSVQN 317
Query: 120 ------------------------SLKDV------EPSSVNESALSAAFANYADKMGEKK 149
+DV EP +SALSAAFA Y+ ++G++K
Sbjct: 318 KPASPESSIRNKAESSSLIEDKQEDTEDVSKRRKKEPEVTVKSALSAAFAKYSGRVGKRK 377
Query: 150 NSSSQKQETETRIPENRSSILAKEAMA 176
++S ++ E SI++KE+ A
Sbjct: 378 STS--------QVEEKEESIISKESEA 396
>gi|357441595|ref|XP_003591075.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
gi|355480123|gb|AES61326.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
Length = 401
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 86/193 (44%), Gaps = 77/193 (39%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALT+V VNKTDVV LG+ G
Sbjct: 245 LTHALTTVRHVNKTDVVTLGTNFG------------------------------------ 268
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPET---- 118
SLS+IM ASMEDLARCPGI ERKVK L+DTFHEPFK V S IPET
Sbjct: 269 --------SLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQAIPETSVQN 320
Query: 119 ----------------PSLKDV-------------EPSSVNESALSAAFANYADKMGEKK 149
SL+D+ EP SALS AFA +++ G++
Sbjct: 321 QPTSQDTSVINNTESSSSLEDIHKDADSASKRKKKEPEFTVRSALSVAFAKLSERAGKRN 380
Query: 150 NSSSQKQETETRI 162
SS K++ ET +
Sbjct: 381 ISSKLKEKEETVV 393
>gi|297829042|ref|XP_002882403.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
lyrata]
gi|297328243|gb|EFH58662.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 79/170 (46%), Gaps = 71/170 (41%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
L H+LTS+ VNK+DVV LGST G
Sbjct: 259 LNHSLTSIRHVNKSDVVTLGSTFG------------------------------------ 282
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPP-----IPE 117
SL+HI+DASMEDLARCPGI ERKV+ LYDTFHEPFK S +P IPE
Sbjct: 283 --------SLAHIIDASMEDLARCPGIGERKVRRLYDTFHEPFKRATSSYPSVVEPTIPE 334
Query: 118 TPSLKDV---EPSSVNE-------------------SALSAAFANYADKM 145
P K+V EP +E +ALSA FA Y+DK+
Sbjct: 335 APVQKNVSSKEPVVEDEDFVEDSRKRKKKEPEKTVKTALSAVFARYSDKL 384
>gi|357147056|ref|XP_003574205.1| PREDICTED: DNA excision repair protein ERCC-1-like [Brachypodium
distachyon]
Length = 391
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 81/168 (48%), Gaps = 69/168 (41%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALTS+ VNKTDVV LGST G
Sbjct: 239 LTHALTSIRRVNKTDVVTLGSTFG------------------------------------ 262
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSL 121
SLS IMD+SME+LARCPGI ERKVK +YDTFHEPFK V R + +P TP
Sbjct: 263 --------SLSRIMDSSMEELARCPGIGERKVKRIYDTFHEPFKRVTPRPNLLVPLTPDE 314
Query: 122 KDV--EPSSVN----------------------ESALSAAFANYADKM 145
K V +PSS N +SAL+AAFA Y++K+
Sbjct: 315 KKVSGQPSSTNVGMPDPGAENLGASNNKTGPDVKSALTAAFAKYSEKI 362
>gi|10122039|gb|AAG13428.1|AC051634_9 putative nucleotide repair protein [Oryza sativa Japonica Group]
Length = 395
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 91/184 (49%), Gaps = 69/184 (37%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALTS+ VNKTDVV LGS+ G
Sbjct: 239 LTHALTSIRHVNKTDVVTLGSSFG------------------------------------ 262
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSL 121
SLS +M+ASME+LARCPGI ERKVK L+DTFHEPFK V SR + +P+TP
Sbjct: 263 --------SLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDR 314
Query: 122 KDV--EPSSVNE---------------------SALSAAFANYADKM-GEKKNSSSQKQE 157
+ +PSS N+ SAL+ AFA Y++K+ + ++S++ E
Sbjct: 315 EKASGQPSSTNDGAQDAVEKPDASVNKKSSNVRSALTEAFAKYSEKIRNQNRDSTNVAGE 374
Query: 158 TETR 161
+TR
Sbjct: 375 DQTR 378
>gi|326512966|dbj|BAK03390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 80/164 (48%), Gaps = 65/164 (39%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
THALTS+ VNKTDV+ LGS+ G
Sbjct: 240 FTHALTSIRRVNKTDVITLGSSFG------------------------------------ 263
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSL 121
SLS IMDASME+LARCPGI ERKVK L+DTFHEPFK V R + +P+TP
Sbjct: 264 --------SLSRIMDASMEELARCPGIGERKVKRLHDTFHEPFKRVTPRPNLVVPDTPDR 315
Query: 122 KDV--EPSSVNE------------------SALSAAFANYADKM 145
+ +PSS N+ SAL+AAFA Y++K+
Sbjct: 316 EKASGQPSSTNDGTPEKSDTSKNKKGSDVKSALTAAFAKYSEKV 359
>gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryza sativa Indica Group]
Length = 430
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 84/175 (48%), Gaps = 68/175 (38%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALTS+ VNKTDVV LGS+ G
Sbjct: 282 LTHALTSIRHVNKTDVVTLGSSFG------------------------------------ 305
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSL 121
SLS +M+ASME+LARCPGI ERKVK L+DTFHEPFK V SR + +P+TP
Sbjct: 306 --------SLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDR 357
Query: 122 KDV--EPSSVNE---------------------SALSAAFANYADKMGEKKNSSS 153
+ +PSS N+ SAL+ AFA Y++K+ + S+
Sbjct: 358 EKASGQPSSTNDGAQDAVEKPDASVNKKSSNVRSALTEAFAKYSEKIRNQNRDST 412
>gi|222613143|gb|EEE51275.1| hypothetical protein OsJ_32175 [Oryza sativa Japonica Group]
Length = 430
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 84/175 (48%), Gaps = 68/175 (38%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALTS+ VNKTDVV LGS+ G
Sbjct: 282 LTHALTSIRHVNKTDVVTLGSSFG------------------------------------ 305
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSL 121
SLS +M+ASME+LARCPGI ERKVK L+DTFHEPFK V SR + +P+TP
Sbjct: 306 --------SLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDR 357
Query: 122 KDV--EPSSVNE---------------------SALSAAFANYADKMGEKKNSSS 153
+ +PSS N+ SAL+ AFA Y++K+ + S+
Sbjct: 358 EKASGQPSSTNDGAQDAVEKPDASVNKKSSNVRSALTEAFAKYSEKIRNQNRDST 412
>gi|115482968|ref|NP_001065077.1| Os10g0518900 [Oryza sativa Japonica Group]
gi|78708916|gb|ABB47891.1| DNA excision repair protein ERCC-1, putative, expressed [Oryza
sativa Japonica Group]
gi|113639686|dbj|BAF26991.1| Os10g0518900 [Oryza sativa Japonica Group]
gi|215697952|dbj|BAG92132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 387
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 84/175 (48%), Gaps = 68/175 (38%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTHALTS+ VNKTDVV LGS+ G
Sbjct: 239 LTHALTSIRHVNKTDVVTLGSSFG------------------------------------ 262
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSL 121
SLS +M+ASME+LARCPGI ERKVK L+DTFHEPFK V SR + +P+TP
Sbjct: 263 --------SLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRVSSRPNIVVPDTPDR 314
Query: 122 KDV--EPSSVNE---------------------SALSAAFANYADKMGEKKNSSS 153
+ +PSS N+ SAL+ AFA Y++K+ + S+
Sbjct: 315 EKASGQPSSTNDGAQDAVEKPDASVNKKSSNVRSALTEAFAKYSEKIRNQNRDST 369
>gi|242033937|ref|XP_002464363.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
gi|241918217|gb|EER91361.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
Length = 397
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 82/167 (49%), Gaps = 68/167 (40%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
L+H+LTS+ VNKTDVV LGS+ G
Sbjct: 248 LSHSLTSIRHVNKTDVVTLGSSFG------------------------------------ 271
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSL 121
SLS IM+ASME+LARCPGI ERKVK LYDTFHEPFK V +R + +P+TP
Sbjct: 272 --------SLSQIMNASMEELARCPGIGERKVKRLYDTFHEPFKRVSARPNLVVPDTPDR 323
Query: 122 KDV--EPSSVNE---------------------SALSAAFANYADKM 145
+ +PSS ++ SAL+AAFA Y++K+
Sbjct: 324 EKAKGQPSSTDDSLQDAVEKPDAPKKKKGSDVRSALTAAFAKYSEKI 370
>gi|414870732|tpg|DAA49289.1| TPA: hypothetical protein ZEAMMB73_493341 [Zea mays]
Length = 162
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 78/171 (45%), Gaps = 72/171 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTH LTS+ VNKTDVV LGS+ G
Sbjct: 9 LTHGLTSIRHVNKTDVVTLGSSFG------------------------------------ 32
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPP---IPETP 119
SLS IM+ SM++LARCPGI ERKV+ LYDTFHEPFK V +R P +P+TP
Sbjct: 33 --------SLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTP 84
Query: 120 SLKDV--EPSSVN-----------------------ESALSAAFANYADKM 145
+ +PSS + SAL+ AFA Y++K+
Sbjct: 85 DREKAKGQPSSTDGSSLQDAVEKPDASKKTKKGSDVRSALTVAFAKYSEKI 135
>gi|212721946|ref|NP_001131279.1| uncharacterized protein LOC100192592 [Zea mays]
gi|194691068|gb|ACF79618.1| unknown [Zea mays]
gi|414870731|tpg|DAA49288.1| TPA: mating-type switching protein swi10 [Zea mays]
Length = 397
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 78/171 (45%), Gaps = 72/171 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTH LTS+ VNKTDVV LGS+ G
Sbjct: 244 LTHGLTSIRHVNKTDVVTLGSSFG------------------------------------ 267
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPP---IPETP 119
SLS IM+ SM++LARCPGI ERKV+ LYDTFHEPFK V +R P +P+TP
Sbjct: 268 --------SLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTP 319
Query: 120 SLKDV--EPSSVN-----------------------ESALSAAFANYADKM 145
+ +PSS + SAL+ AFA Y++K+
Sbjct: 320 DREKAKGQPSSTDGSSLQDAVEKPDASKKTKKGSDVRSALTVAFAKYSEKI 370
>gi|195657333|gb|ACG48134.1| mating-type switching protein swi10 [Zea mays]
Length = 396
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 70/140 (50%), Gaps = 49/140 (35%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LTH LTS+ VNKTDVV LGS+ G
Sbjct: 243 LTHGLTSIRHVNKTDVVTLGSSFG------------------------------------ 266
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR---HPPIPETP 119
SLS IM+ SM++LARCPGI ERKV+ LYDTFHEPFK V +R + +P+TP
Sbjct: 267 --------SLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRSNLVVPDTP 318
Query: 120 SLKDV--EPSSVNESALSAA 137
+ +PSS + S+L A
Sbjct: 319 DREKAKGQPSSTDGSSLQDA 338
>gi|195609050|gb|ACG26355.1| hypothetical protein [Zea mays]
Length = 134
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 28/103 (27%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPP---IPETPSLKDV--E 125
SLS IM+ SM++LARCPGI ERKV+ LYDTFHEPFK V +R P +P+TP + +
Sbjct: 5 SLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQ 64
Query: 126 PSSVN-----------------------ESALSAAFANYADKM 145
PSS + SAL+ AFA Y++K+
Sbjct: 65 PSSTDGSSLQDAVEKPDASKKTKKGSDVRSALTVAFAKYSEKI 107
>gi|414870733|tpg|DAA49290.1| TPA: hypothetical protein ZEAMMB73_493341 [Zea mays]
Length = 139
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 28/103 (27%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPP---IPETPSLKDV--E 125
SLS IM+ SM++LARCPGI ERKV+ LYDTFHEPFK V +R P +P+TP + +
Sbjct: 10 SLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQ 69
Query: 126 PSSVN-----------------------ESALSAAFANYADKM 145
PSS + SAL+ AFA Y++K+
Sbjct: 70 PSSTDGSSLQDAVEKPDASKKTKKGSDVRSALTVAFAKYSEKI 112
>gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium longiflorum]
Length = 278
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 71/154 (46%), Gaps = 50/154 (32%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LT ALTSV VNKTD V LG+ G
Sbjct: 167 LTQALTSVRHVNKTDAVTLGTAFG------------------------------------ 190
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETPSLK 122
SLS IMDAS+EDLARCPGI ERKVK L+DTFHEPF+ V +R P LK
Sbjct: 191 --------SLSGIMDASLEDLARCPGIGERKVKRLHDTFHEPFRRVSNR----PAVAYLK 238
Query: 123 DVEPSSVNESALSAAFANYADKMGEKKNSSSQKQ 156
+ P ++ + A + GEK N+S K+
Sbjct: 239 -LPPKMLSAEEILATKEG-VEVEGEKANTSKCKE 270
>gi|302782932|ref|XP_002973239.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
gi|300158992|gb|EFJ25613.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
Length = 232
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 50/104 (48%), Gaps = 44/104 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LT ALTSV +NKTDVV LGST G
Sbjct: 152 LTSALTSVRHINKTDVVTLGSTFG------------------------------------ 175
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106
S++ +M ASMEDLARCPGI ERKVK LYD FHEPF+
Sbjct: 176 --------SMASVMSASMEDLARCPGIGERKVKRLYDAFHEPFR 211
>gi|302823991|ref|XP_002993643.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
gi|300138571|gb|EFJ05335.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 50/104 (48%), Gaps = 44/104 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LT ALTSV +NKTDVV LGST G
Sbjct: 129 LTSALTSVRHINKTDVVTLGSTFG------------------------------------ 152
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106
S++ +M ASMEDLARCPGI ERKVK L+D FHEPF+
Sbjct: 153 --------SMASVMSASMEDLARCPGIGERKVKRLHDAFHEPFR 188
>gi|168034363|ref|XP_001769682.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679031|gb|EDQ65483.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 279
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 50/104 (48%), Gaps = 44/104 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
+T ALT+V VNKTDV+ LGST
Sbjct: 217 MTSALTTVRHVNKTDVLTLGST-------------------------------------- 238
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106
F+T L+ I ASMEDLARCPGI ERKVK LYD FHEPF+
Sbjct: 239 FET------LTGIFSASMEDLARCPGIGERKVKRLYDAFHEPFR 276
>gi|168034367|ref|XP_001769684.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679033|gb|EDQ65485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 285
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 50/104 (48%), Gaps = 44/104 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
+T ALT+V VNKTDV+ LGST
Sbjct: 223 MTSALTTVRHVNKTDVLTLGST-------------------------------------- 244
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106
F+T L+ I ASMEDLARCPGI ERKVK LYD FHEPF+
Sbjct: 245 FET------LTGIFSASMEDLARCPGIGERKVKRLYDAFHEPFR 282
>gi|440794479|gb|ELR15639.1| DNA repair protein rad10 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 485
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 46/106 (43%), Gaps = 44/106 (41%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
L+ LT+V VNKTDV+ L ST G
Sbjct: 358 LSDCLTAVRGVNKTDVLTLSSTFG------------------------------------ 381
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPV 108
SL +I+D SME+L+ CPG+ RKVK LY+TFH PF P
Sbjct: 382 --------SLKNIIDCSMEELSLCPGLGPRKVKNLYETFHAPFDPT 419
>gi|351706988|gb|EHB09907.1| DNA excision repair protein ERCC-1 [Heterocephalus glaber]
Length = 483
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 3 LTHALTSVWSVNKTDVVNL-------GSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSF 55
+T L+SV SVNKTD L S+ G P QL + L ++ R
Sbjct: 372 VTECLSSVKSVNKTDSQTLLSTFGACASSQGYLGGPRQLGQGGALCSPLLTSRFRPPAPX 431
Query: 56 QRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL +M AS EDLA CPG+ +K + L+D HEPF
Sbjct: 432 XXXXXXXXXXXXX--SLEQLMAASREDLALCPGLGPQKARRLFDVLHEPF 479
>gi|320166062|gb|EFW42961.1| excision repair enzyme ERCC-1 [Capsaspora owczarzaki ATCC 30864]
Length = 509
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 44/105 (41%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
+T LTS+ SVNKTDV+ L ST G
Sbjct: 316 VTDILTSIKSVNKTDVITLLSTFG------------------------------------ 339
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKP 107
SL +I +A+ E L+RCPGI E KV+ +Y+ FH+PF P
Sbjct: 340 --------SLKNIANATPEQLSRCPGIGEHKVRRIYEAFHQPFTP 376
>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
Length = 610
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 62 LFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTF 101
+F+ SLS M+ASME+LARCPGI E+KVKCLYD+
Sbjct: 559 IFELGPEEGSLSQTMNASMEELARCPGIGEQKVKCLYDSM 598
>gi|428178864|gb|EKX47737.1| ERCC1/Rad10 nucleotide excision repair [Guillardia theta CCMP2712]
Length = 296
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 44/106 (41%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LT LT+V SVN+TDV NL ++ G
Sbjct: 195 LTDVLTNVRSVNRTDVANLSTSLG------------------------------------ 218
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPV 108
SL++IM AS E LA CPG+ E+K++ L++ F EPF+ V
Sbjct: 219 --------SLANIMTASRERLALCPGVGEKKIQRLFEAFREPFRQV 256
>gi|301100660|ref|XP_002899419.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
gi|262103727|gb|EEY61779.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
Length = 308
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 44/99 (44%)
Query: 7 LTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQ 66
LTS+ SVNKTDVV L ST G
Sbjct: 249 LTSIRSVNKTDVVTLLSTFG---------------------------------------- 268
Query: 67 SAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
++ +M+ASME+L+ CPG+ +KV+ L +TF EPF
Sbjct: 269 ----TVKGLMNASMEELSLCPGVGAKKVRQLLETFQEPF 303
>gi|327289261|ref|XP_003229343.1| PREDICTED: DNA excision repair protein ERCC-1-like [Anolis
carolinensis]
Length = 332
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 47/111 (42%), Gaps = 48/111 (43%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
+T LTSV SVNKTD ++L S
Sbjct: 257 MTDCLTSVKSVNKTDTLSLLSN-------------------------------------- 278
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHP 113
FK SL++++ AS EDL+ CPGI +K K L+D HEPF +HP
Sbjct: 279 FK------SLANLVQASKEDLSLCPGIGPQKAKRLFDALHEPF----YKHP 319
>gi|166157967|ref|NP_001107393.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Xenopus (Silurana) tropicalis]
gi|163916074|gb|AAI57332.1| LOC100135224 protein [Xenopus (Silurana) tropicalis]
gi|213625729|gb|AAI71208.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
gi|213627374|gb|AAI71206.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
Length = 268
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
+L + +AS EDL+ CPG+ +K K LYDTFHEPF
Sbjct: 225 TLFDLANASREDLSLCPGLGPQKAKRLYDTFHEPF 259
>gi|301777726|ref|XP_002924284.1| PREDICTED: DNA excision repair protein ERCC-1-like [Ailuropoda
melanoleuca]
Length = 306
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL +M AS EDLA CPG+ +K + L+D HEPF
Sbjct: 267 SLEQLMAASREDLALCPGLGPQKARRLFDVLHEPF 301
>gi|73948160|ref|XP_855116.1| PREDICTED: DNA excision repair protein ERCC-1 [Canis lupus
familiaris]
Length = 294
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL +M AS EDLA CPG+ +K + L+D HEPF
Sbjct: 255 SLEQLMAASREDLALCPGLGPQKARRLFDVLHEPF 289
>gi|426243944|ref|XP_004015800.1| PREDICTED: DNA excision repair protein ERCC-1 [Ovis aries]
Length = 284
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDL+ CPG+ +K + L+D FHEPF
Sbjct: 245 SLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPF 279
>gi|348557640|ref|XP_003464627.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cavia
porcellus]
Length = 300
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 44/103 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
+T LT+V SVNKTD L ST G
Sbjct: 237 ITECLTTVKSVNKTDSQTLLSTFG------------------------------------ 260
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL +M AS +DLA CPG+ +K + L+D HEPF
Sbjct: 261 --------SLEQLMAASRQDLALCPGLGPQKARRLFDVLHEPF 295
>gi|410897108|ref|XP_003962041.1| PREDICTED: DNA excision repair protein ERCC-1-like [Takifugu
rubripes]
Length = 349
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
S+ IM+AS +DL CPG+ +K + LYD FH+PF
Sbjct: 309 SVEGIMNASKDDLVLCPGLGPQKARRLYDVFHKPF 343
>gi|440902295|gb|ELR53102.1| DNA excision repair protein ERCC-1, partial [Bos grunniens mutus]
Length = 298
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDL+ CPG+ +K + L+D FHEPF
Sbjct: 259 SLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPF 293
>gi|115496970|ref|NP_001069853.1| DNA excision repair protein ERCC-1 [Bos taurus]
gi|122145868|sp|Q1LZ75.1|ERCC1_BOVIN RecName: Full=DNA excision repair protein ERCC-1
gi|94534838|gb|AAI16164.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Bos taurus]
gi|296477517|tpg|DAA19632.1| TPA: DNA excision repair protein ERCC-1 [Bos taurus]
Length = 294
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDL+ CPG+ +K + L+D FHEPF
Sbjct: 255 SLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPF 289
>gi|350539469|ref|NP_001233733.1| DNA excision repair protein ERCC-1 [Cricetulus griseus]
gi|6576543|dbj|BAA88319.1| ERCC1 [Cricetulus griseus]
Length = 293
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 254 SLEQLLTASREDLALCPGLGPQKARRLFDVLHEPF 288
>gi|403299027|ref|XP_003940294.1| PREDICTED: DNA excision repair protein ERCC-1 [Saimiri boliviensis
boliviensis]
Length = 321
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 282 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 316
>gi|344249242|gb|EGW05346.1| DNA excision repair protein ERCC-1 [Cricetulus griseus]
Length = 111
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 44/105 (41%)
Query: 4 THALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLF 63
T LT+V SVNKTD L +T G
Sbjct: 49 TECLTTVKSVNKTDSQTLLATFG------------------------------------- 71
Query: 64 KTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPV 108
SL ++ AS EDLA CPG+ +K + L+D HEPF V
Sbjct: 72 -------SLEQLLTASREDLALCPGLGPQKARRLFDVLHEPFLKV 109
>gi|73980826|ref|XP_540176.2| PREDICTED: uncharacterized protein LOC483061 [Canis lupus
familiaris]
Length = 461
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL +M AS EDLA CPG+ +K L+D HEPF
Sbjct: 422 SLEQLMTASREDLALCPGLGPQKAWRLFDVLHEPF 456
>gi|345310668|ref|XP_001517592.2| PREDICTED: DNA excision repair protein ERCC-1-like [Ornithorhynchus
anatinus]
Length = 310
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 51 SAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
+ KS R ++L + SL ++ AS EDL+ CPG +K + L+DT HEPF
Sbjct: 253 TVKSVNRTDSLTLLSTFG--SLDQLVAASAEDLSLCPGFGPQKARRLFDTLHEPF 305
>gi|291414832|ref|XP_002723664.1| PREDICTED: excision repair cross-complementing 1 isofrom 2-like
[Oryctolagus cuniculus]
Length = 301
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS +DLA CPG+ +K + LYD HEPF
Sbjct: 262 SLEQLIAASRDDLALCPGLGPQKARRLYDVLHEPF 296
>gi|395854326|ref|XP_003799647.1| PREDICTED: DNA excision repair protein ERCC-1 [Otolemur garnettii]
Length = 239
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 200 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 234
>gi|328865770|gb|EGG14156.1| DNA excision repair protein 1 [Dictyostelium fasciculatum]
Length = 413
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPET-PSLKDVE 125
S+ + D+S E ++ CPGI +KV L+ H+PFK V P+ + PSL+D +
Sbjct: 348 SIKELFDSSKEAVSLCPGIGPKKVNSLWSILHQPFKAVKPSPKPVNQNPPSLEDFD 403
>gi|1763756|gb|AAB54060.1| excision repair enzyme ERCC-1 [Mesocricetus auratus]
Length = 127
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPV 108
SL ++ AS EDLA CPG+ +K + L+D HEPF V
Sbjct: 88 SLEQLLTASREDLALCPGLGPQKARRLFDVLHEPFLKV 125
>gi|444730739|gb|ELW71113.1| DNA excision repair protein ERCC-1 [Tupaia chinensis]
Length = 298
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 44/103 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
+T LT+V SVNKTD L +T G
Sbjct: 235 VTECLTTVKSVNKTDSQTLLATFG------------------------------------ 258
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 --------SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|410982710|ref|XP_003997691.1| PREDICTED: DNA excision repair protein ERCC-1 [Felis catus]
Length = 306
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 267 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 301
>gi|402905929|ref|XP_003915760.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Papio
anubis]
Length = 298
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|431909163|gb|ELK12753.1| DNA excision repair protein ERCC-1 [Pteropus alecto]
Length = 315
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 277 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 311
>gi|61357240|gb|AAX41357.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 297
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|297705160|ref|XP_002829451.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Pongo
abelii]
Length = 297
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|149722206|ref|XP_001502644.1| PREDICTED: DNA excision repair protein ERCC-1-like [Equus caballus]
Length = 291
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 252 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 286
>gi|60655939|gb|AAX32533.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 297
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|4503599|ref|NP_001974.1| DNA excision repair protein ERCC-1 isoform 2 [Homo sapiens]
gi|302632548|ref|NP_001181860.1| DNA excision repair protein ERCC-1 [Pan troglodytes]
gi|397493347|ref|XP_003817569.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Pan
paniscus]
gi|119538|sp|P07992.1|ERCC1_HUMAN RecName: Full=DNA excision repair protein ERCC-1
gi|21105797|gb|AAM34796.1|AF512555_1 excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|182174|gb|AAA52394.1| excision repair protein [Homo sapiens]
gi|182177|gb|AAA35810.1| excision repair protein [Homo sapiens]
gi|2583146|gb|AAC16253.1| excision repair protein [Homo sapiens]
gi|14286266|gb|AAH08930.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|54696474|gb|AAV38609.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|60818953|gb|AAX36483.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61354943|gb|AAX41079.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61357235|gb|AAX41356.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61363050|gb|AAX42326.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|119577752|gb|EAW57348.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_a [Homo sapiens]
gi|119577754|gb|EAW57350.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_a [Homo sapiens]
gi|123990970|gb|ABM83928.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|123999343|gb|ABM87247.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|410220356|gb|JAA07397.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220358|gb|JAA07398.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220362|gb|JAA07400.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220364|gb|JAA07401.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254810|gb|JAA15372.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254812|gb|JAA15373.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254818|gb|JAA15376.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295290|gb|JAA26245.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295292|gb|JAA26246.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295298|gb|JAA26249.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335881|gb|JAA36887.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335883|gb|JAA36888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335887|gb|JAA36890.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335889|gb|JAA36891.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|225908|prf||1403276A DNA repair gene
Length = 297
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|54696472|gb|AAV38608.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|60652851|gb|AAX29120.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|60830454|gb|AAX36930.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61365104|gb|AAX42654.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61367243|gb|AAX42971.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 298
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|189054601|dbj|BAG37398.1| unnamed protein product [Homo sapiens]
Length = 297
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|426389186|ref|XP_004061005.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Gorilla
gorilla gorilla]
Length = 297
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|402905935|ref|XP_003915763.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 4 [Papio
anubis]
Length = 274
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 235 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 269
>gi|395751371|ref|XP_003779251.1| PREDICTED: DNA excision repair protein ERCC-1 [Pongo abelii]
Length = 273
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 235 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 269
>gi|260593725|ref|NP_001159521.1| DNA excision repair protein ERCC-1 isoform 3 [Homo sapiens]
gi|397493351|ref|XP_003817571.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 3 [Pan
paniscus]
gi|15146354|dbj|BAB62810.1| excision repair protein 1 [Homo sapiens]
gi|119577753|gb|EAW57349.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_b [Homo sapiens]
gi|410220360|gb|JAA07399.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254814|gb|JAA15374.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295294|gb|JAA26247.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335885|gb|JAA36889.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
Length = 273
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 235 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 269
>gi|426389190|ref|XP_004061007.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 3 [Gorilla
gorilla gorilla]
Length = 273
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 235 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 269
>gi|432108802|gb|ELK33410.1| DNA excision repair protein ERCC-1 [Myotis davidii]
Length = 267
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 228 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 262
>gi|344269327|ref|XP_003406504.1| PREDICTED: DNA excision repair protein ERCC-1-like [Loxodonta
africana]
Length = 298
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>gi|38112299|gb|AAR11239.1| excision repair protein [Pan troglodytes]
Length = 251
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 216 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 250
>gi|38112301|gb|AAR11240.1| excision repair protein [Macaca mulatta]
Length = 227
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 192 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 226
>gi|390479159|ref|XP_002762336.2| PREDICTED: DNA excision repair protein ERCC-1 [Callithrix jacchus]
Length = 238
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 199 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 233
>gi|85544011|pdb|1Z00|A Chain A, Solution Structure Of The C-Terminal Domain Of Ercc1
Complexed With The C-Terminal Domain Of Xpf
Length = 89
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPV 108
SL ++ AS EDLA CPG+ +K + L+D HEPF V
Sbjct: 41 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 78
>gi|73536055|pdb|2A1J|B Chain B, Crystal Structure Of The Complex Between The C-Terminal
Domains Of Human Xpf And Ercc1
Length = 91
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPV 108
SL ++ AS EDLA CPG+ +K + L+D HEPF V
Sbjct: 54 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 91
>gi|441656301|ref|XP_003277689.2| PREDICTED: DNA excision repair protein ERCC-1 [Nomascus leucogenys]
Length = 195
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 44/103 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
+T LT+V SVNKTD L +T G
Sbjct: 133 VTECLTTVKSVNKTDSQTLLTTFG------------------------------------ 156
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 157 --------SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 191
>gi|402905931|ref|XP_003915761.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Papio
anubis]
Length = 226
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 187 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 221
>gi|426389188|ref|XP_004061006.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Gorilla
gorilla gorilla]
Length = 225
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 187 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 221
>gi|397493349|ref|XP_003817570.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Pan
paniscus]
gi|193787266|dbj|BAG52472.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 187 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 221
>gi|226533697|ref|NP_001152781.1| DNA excision repair protein ERCC-1 [Sus scrofa]
gi|226354716|gb|ACO50967.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [Sus scrofa]
Length = 294
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL + AS EDLA CPG+ +K + L+D HEPF
Sbjct: 255 SLEQLTAASREDLALCPGLGPQKARRLFDVLHEPF 289
>gi|196016209|ref|XP_002117958.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens]
gi|190579431|gb|EDV19526.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens]
Length = 265
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 47/113 (41%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
LT LT++ SVN+ DV+ L ST G
Sbjct: 190 LTDCLTTIKSVNRGDVITLQSTFG------------------------------------ 213
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPI 115
S+ +I+ AS++DLA CPGI +K K ++ F EPF +++H I
Sbjct: 214 --------SMDNIISASVQDLALCPGIGLQKAKRIHALFREPF---LTKHKKI 255
>gi|260824255|ref|XP_002607083.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
gi|229292429|gb|EEN63093.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
Length = 427
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
S+ I+ AS EDLA CPG +K K +YD H+PF
Sbjct: 381 SIEGIIKASKEDLALCPGFGPQKAKRVYDALHQPF 415
>gi|157819415|ref|NP_001099698.1| DNA excision repair protein ERCC-1 [Rattus norvegicus]
gi|149056779|gb|EDM08210.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149056780|gb|EDM08211.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 298
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L++ HEPF
Sbjct: 259 SLEQLITASREDLALCPGLGPQKARRLFEVLHEPF 293
>gi|397607163|gb|EJK59580.1| hypothetical protein THAOC_20175 [Thalassiosira oceanica]
Length = 321
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 44/103 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
++HAL+SV SVNKTD L + G
Sbjct: 219 VSHALSSVRSVNKTDAGQLLNQFGT----------------------------------- 243
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
FK+ +++AS+++L+ CPGI +KV L+D FH PF
Sbjct: 244 FKS---------VVNASLDELSVCPGIGPKKVARLHDAFHRPF 277
>gi|226442650|ref|NP_001140125.1| DNA excision repair protein ERCC-1 [Salmo salar]
gi|221220050|gb|ACM08686.1| DNA excision repair protein ERCC-1 [Salmo salar]
Length = 383
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL I+ A+ EDL CPG+ +K + LYD H+PF
Sbjct: 341 SLEGIITAAKEDLVLCPGLGPQKARRLYDVLHQPF 375
>gi|50855|emb|CAA30310.1| unnamed protein product [Mus musculus]
Length = 298
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL + AS EDLA CPG+ +K + L++ HEPF
Sbjct: 259 SLEQLFTASREDLALCPGLGPQKARRLFEVLHEPF 293
>gi|187960064|ref|NP_031974.2| DNA excision repair protein ERCC-1 isoform a [Mus musculus]
gi|408360078|sp|P07903.2|ERCC1_MOUSE RecName: Full=DNA excision repair protein ERCC-1
gi|15029977|gb|AAH11224.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Mus musculus]
gi|26353238|dbj|BAC40249.1| unnamed protein product [Mus musculus]
gi|74203782|dbj|BAE23112.1| unnamed protein product [Mus musculus]
gi|148691190|gb|EDL23137.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Mus musculus]
Length = 298
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL + AS EDLA CPG+ +K + L++ HEPF
Sbjct: 259 SLEQLFTASREDLALCPGLGPQKARRLFEVLHEPF 293
>gi|328851214|gb|EGG00371.1| hypothetical protein MELLADRAFT_39770 [Melampsora larici-populina
98AG31]
Length = 191
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKP 107
S +I +AS DL RC G+ E+KV L D+F+ PF P
Sbjct: 154 SFRNITEASQADLLRCAGLGEKKVNRLIDSFNSPFGP 190
>gi|156230822|gb|AAI51884.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
Length = 342
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL I+ AS E+L CPG+ +K + LYD H+PF
Sbjct: 300 SLEGIIKASKEELVLCPGLGPQKARRLYDVLHQPF 334
>gi|156739319|ref|NP_001096608.1| DNA excision repair protein ERCC-1 [Danio rerio]
gi|187608525|ref|NP_001120181.1| uncharacterized protein LOC100145222 [Xenopus (Silurana)
tropicalis]
gi|44890524|gb|AAH66697.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
gi|156230040|gb|AAI52195.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
gi|166796426|gb|AAI59290.1| LOC100145222 protein [Xenopus (Silurana) tropicalis]
Length = 342
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL I+ AS E+L CPG+ +K + LYD H+PF
Sbjct: 300 SLEGIIKASKEELVLCPGLGPQKARRLYDVLHQPF 334
>gi|307111014|gb|EFN59249.1| hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis]
Length = 297
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 44/105 (41%)
Query: 6 ALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKT 65
ALT V VNKTDV LG G
Sbjct: 181 ALTVVRGVNKTDVKTLGDRFG--------------------------------------- 201
Query: 66 QSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVS 110
S++ I AS E+L CPGI K + L++TFH+PF+ +S
Sbjct: 202 -----SVAVIFKASAEELQACPGIGPTKARRLHETFHQPFRRSIS 241
>gi|126329589|ref|XP_001365997.1| PREDICTED: DNA excision repair protein ERCC-1-like [Monodelphis
domestica]
Length = 326
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL + AS EDL+ CPG +K + L+D H+PF
Sbjct: 287 SLEQLTAASQEDLSLCPGFGPQKARRLFDVLHQPF 321
>gi|443921170|gb|ELU40907.1| Rad10 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 314
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 27/116 (23%)
Query: 27 IHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARC 86
+ ND + +LRA ++ V +N + + + KT S S+I A+ ED+ C
Sbjct: 126 VDNDYQSVLRAALTTVRGVN----------KTDVMTLKTNFG--SFSNIAHAATEDMQLC 173
Query: 87 PGIVERKVKCLYDTFHEPF-----KPVV----------SRHPPIPETPSLKDVEPS 127
PG KV+ LY+ F+ PF KPV PIP + +D+E S
Sbjct: 174 PGFGPTKVRRLYEAFNRPFYSSGQKPVTLPLDSATDGNLSSDPIPISSQARDIEGS 229
>gi|224003765|ref|XP_002291554.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973330|gb|EED91661.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 191
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
+ +++ AS+E+L+ CPG+ +KV+ LY+ FH PF
Sbjct: 156 TWKNLVGASVEELSVCPGVGVKKVRRLYEAFHRPF 190
>gi|358053841|dbj|GAA99973.1| hypothetical protein E5Q_06676 [Mixia osmundae IAM 14324]
Length = 822
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL IM AS +L +CPG+ E KV+ L D F +PF
Sbjct: 768 SLKDIMMASSSELVQCPGLGELKVRRLRDAFSQPF 802
>gi|348515709|ref|XP_003445382.1| PREDICTED: DNA excision repair protein ERCC-1-like [Oreochromis
niloticus]
Length = 335
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 67 SAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SA S+ I+ AS EDL CPG+ +K + L+D H+PF
Sbjct: 289 SAFSSVEGIISASKEDLVVCPGLGPQKARRLFDVLHKPF 327
>gi|281202660|gb|EFA76862.1| DNA excision repair protein 1 [Polysphondylium pallidum PN500]
Length = 536
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
++ I D S E CPG+ ++KV LY+ H+PF
Sbjct: 424 TVKRIFDGSKESFGLCPGMGQKKVNSLYNVLHQPF 458
>gi|391327125|ref|XP_003738057.1| PREDICTED: DNA excision repair protein ERCC-1-like [Metaseiulus
occidentalis]
Length = 213
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL I +AS+E+++ PGI ERK K +Y+T EP
Sbjct: 176 SLKKIAEASIEEMSVVPGIGERKAKQIYETLREPL 210
>gi|449663991|ref|XP_004205849.1| PREDICTED: uncharacterized protein LOC101236335 [Hydra
magnipapillata]
Length = 446
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106
SL ++ +AS+ +L CPG +K + LY+ HEPFK
Sbjct: 262 SLKNVANASVVELTLCPGFGPKKAQRLYNALHEPFK 297
>gi|403416893|emb|CCM03593.1| predicted protein [Fibroporia radiculosa]
Length = 1294
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
L ALTS+ VNKTDV L ++ G+ P N++L
Sbjct: 1085 LRTALTSISKVNKTDVETLRTSLGVGIIPF--------------------------NSVL 1118
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106
+ SA S + I AS + L + PG + K + + D F +PF+
Sbjct: 1119 YSELSARQSFADIARASSDQLQKMPGFGQVKARRIVDAFEKPFR 1162
>gi|406605380|emb|CCH43179.1| hypothetical protein BN7_2726 [Wickerhamomyces ciferrii]
Length = 1845
Score = 39.7 bits (91), Expect = 0.90, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 95 KCLYDTFHEPFKPVVSRHPPIPETPSLKDVEPSSVNESALSAAFANYADKMGEKKNSSSQ 154
K LY FH FK ++ ++ + L D E S+ + N ++ + K++ S
Sbjct: 1117 KKLYQDFHLNFKKIIDKYKSTKKEIELNDEESQSIAQ--------NTQVEISDDKDNEST 1168
Query: 155 KQETETRIPENRSSILAKEAMAAELTHSLTMHIYRLL 191
E +++I +N + IL K + +L H L++ I L+
Sbjct: 1169 NWEFKSKILKNLTKILEKSTKSPKLYHQLSIKISDLI 1205
>gi|193683523|ref|XP_001944270.1| PREDICTED: DNA excision repair protein ERCC-1-like [Acyrthosiphon
pisum]
Length = 267
Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL +I AS LA CPG + K LY+T H+PF
Sbjct: 217 SLENICKASQTALALCPGFAQHKATQLYNTLHKPF 251
>gi|395529691|ref|XP_003766942.1| PREDICTED: DNA excision repair protein ERCC-1 [Sarcophilus
harrisii]
Length = 472
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL + AS +DLA CPG +K + L++ H+PF
Sbjct: 434 SLEQLAAASQDDLALCPGFGPQKARRLFEVLHQPF 468
>gi|432934227|ref|XP_004081917.1| PREDICTED: DNA excision repair protein ERCC-1-like [Oryzias
latipes]
Length = 308
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
S+ I+ AS E+L CPG+ +K + LYD H PF
Sbjct: 266 SVEGIISASKEELVLCPGLGPQKARRLYDVLHMPF 300
>gi|170059466|ref|XP_001865376.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus]
gi|167878242|gb|EDS41625.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus]
Length = 243
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
+L++++++S E LA+CPG RK K L+ TF+E F
Sbjct: 206 TLANMINSSEEKLAQCPGFGARKAKKLHKTFNESF 240
>gi|353240901|emb|CCA72747.1| related to dna excision repair protein ercc-1 [Piriformospora
indica DSM 11827]
Length = 247
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 11 WSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSA----KSFQRQNNLLFKTQ 66
W++ + V L + + P L++ RV +++ R+A K + + + K+
Sbjct: 116 WTLEEAGVY-LSTYKLFEHKPPDLIKERVDNDY--DSRMRAAFTSIKGVNKTDVMTLKSN 172
Query: 67 SAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR 111
S S+I A+ + L CPG KV+ L D +PFKP VS+
Sbjct: 173 FG--SFSNIAHATPQQLLDCPGFGALKVRRLKDAMEKPFKPTVSK 215
>gi|195056714|ref|XP_001995148.1| GH22789 [Drosophila grimshawi]
gi|193899354|gb|EDV98220.1| GH22789 [Drosophila grimshawi]
Length = 254
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
+L ++++AS E LA+ G+ RK K LY T HEPF
Sbjct: 217 NLENLINASEERLAQVMGLGPRKAKKLYKTLHEPF 251
>gi|195381327|ref|XP_002049404.1| GJ20764 [Drosophila virilis]
gi|194144201|gb|EDW60597.1| GJ20764 [Drosophila virilis]
Length = 256
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
+L ++++AS E LA+ G+ RK K LY T HEPF
Sbjct: 219 NLENLINASEERLAQVMGLGPRKAKKLYKTLHEPF 253
>gi|409044902|gb|EKM54383.1| hypothetical protein PHACADRAFT_174878 [Phanerochaete carnosa
HHB-10118-sp]
Length = 382
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 26/101 (25%)
Query: 6 ALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKT 65
ALTS+ VNKTD+ ++LR + + +T RS L +
Sbjct: 174 ALTSINKVNKTDI--------------EILRTSIGVC---STYHRS---------LGHPS 207
Query: 66 QSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106
P S + I AS E L + PG + KVK + D F PF+
Sbjct: 208 LRPPKSFADIASASSERLLQLPGFGQVKVKRIKDAFERPFR 248
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,134,441,451
Number of Sequences: 23463169
Number of extensions: 113625599
Number of successful extensions: 367121
Number of sequences better than 100.0: 174
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 366878
Number of HSP's gapped (non-prelim): 281
length of query: 216
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 79
effective length of database: 9,144,741,214
effective search space: 722434555906
effective search space used: 722434555906
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)