BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041647
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1
PE=2 SV=1
Length = 410
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 79/172 (45%), Gaps = 73/172 (42%)
Query: 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLL 62
L H+LTS+ VNK+DVV LGST G
Sbjct: 260 LNHSLTSIRHVNKSDVVTLGSTFG------------------------------------ 283
Query: 63 FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRH-----PPIPE 117
SL+HI+DASMEDLARCPGI ERKVK LYDTFHEPFK S + PPIPE
Sbjct: 284 --------SLAHIIDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPE 335
Query: 118 TPSLKDV------------------------EPSSVNESALSAAFANYADKM 145
P KDV EP ++ALSA FA Y+D++
Sbjct: 336 APVEKDVNSEEPVEEDEDFVEDSRKRKKKEPEPEKTVKTALSAVFARYSDRL 387
>sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1
Length = 294
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDL+ CPG+ +K + L+D FHEPF
Sbjct: 255 SLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPF 289
>sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1
SV=1
Length = 297
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL ++ AS EDLA CPG+ +K + L+D HEPF
Sbjct: 259 SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 293
>sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2
SV=2
Length = 298
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105
SL + AS EDLA CPG+ +K + L++ HEPF
Sbjct: 259 SLEQLFTASREDLALCPGLGPQKARRLFEVLHEPF 293
>sp|B0JFQ0|UVRC_MICAN UvrABC system protein C OS=Microcystis aeruginosa (strain NIES-843)
GN=uvrC PE=3 SV=1
Length = 625
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 54 SFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102
F+RQ LL S L +I +AS+E L + GI E+ K +Y+ FH
Sbjct: 579 GFKRQKELLAHFHS----LDYIREASLEQLQQVTGIGEQLAKEIYNYFH 623
>sp|P73580|UVRC_SYNY3 UvrABC system protein C OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=uvrC PE=3 SV=1
Length = 626
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 54 SFQRQNNLL--FKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102
F RQ LL F+ SL +I +AS++ L PGI + + +YD FH
Sbjct: 578 GFSRQKQLLAHFR------SLDYIREASVKQLQEVPGIGPQLAQTIYDYFH 622
>sp|A9NDQ6|UVRC_COXBR UvrABC system protein C OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=uvrC PE=3 SV=1
Length = 609
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103
L + AS+E++AR PG+ E K +YD H+
Sbjct: 574 GLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|Q83CD5|UVRC_COXBU UvrABC system protein C OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=uvrC PE=3 SV=1
Length = 609
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103
L + AS+E++AR PG+ E K +YD H+
Sbjct: 574 GLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|B6J7K3|UVRC_COXB1 UvrABC system protein C OS=Coxiella burnetii (strain CbuK_Q154)
GN=uvrC PE=3 SV=1
Length = 609
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103
L + AS+E++AR PG+ E K +YD H+
Sbjct: 574 GLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|A9KFP2|UVRC_COXBN UvrABC system protein C OS=Coxiella burnetii (strain Dugway
5J108-111) GN=uvrC PE=3 SV=1
Length = 609
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103
L + AS+E++AR PG+ E K +YD H+
Sbjct: 574 GLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|B6IZT9|UVRC_COXB2 UvrABC system protein C OS=Coxiella burnetii (strain CbuG_Q212)
GN=uvrC PE=3 SV=1
Length = 609
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103
L + AS+E++AR PG+ E K +YD H+
Sbjct: 574 GLQELQRASIEEIARVPGVSETLAKAIYDDCHQ 606
>sp|B8HSX6|UVRC_CYAP4 UvrABC system protein C OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=uvrC PE=3 SV=1
Length = 624
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 54 SFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102
++RQ LL +A S+ +I +AS E LA P I R + +YD FH
Sbjct: 579 GYERQKQLL----AAFRSIDYIREASPEQLATVPLIGPRLAQQIYDYFH 623
>sp|Q8R8M9|UVRC_THETN UvrABC system protein C OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uvrC PE=3
SV=1
Length = 617
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102
S+ I AS+E+L + G+ ER K +Y+ FH
Sbjct: 583 SIEEIKKASLEELKKVKGMNERSAKAVYEYFH 614
>sp|Q2SF17|UVRC_HAHCH UvrABC system protein C OS=Hahella chejuensis (strain KCTC 2396)
GN=uvrC PE=3 SV=1
Length = 612
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103
S+ +I AS+E++ R PGI E + +Y FHE
Sbjct: 580 SVRNIERASLEEIKRVPGISEVIAQTIYAAFHE 612
>sp|B5YF86|UVRC_DICT6 UvrABC system protein C OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=uvrC PE=3 SV=1
Length = 599
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103
+L ++ AS+EDL + PGI E+ + +Y FH+
Sbjct: 565 TLENLKKASLEDLKKVPGISEKIAEKIYLYFHD 597
>sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain-containing protein 11 OS=Homo sapiens
GN=ANKRD11 PE=1 SV=3
Length = 2663
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 6 ALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTK---RRSAKSFQRQNNLL 62
A TS S + D ++ S SG+ + Q +S LY + RR+ + + L
Sbjct: 1751 APTSACSPSFFDRFSVAS-SGLSENASQAPARPLSTNLYRSVSVDIRRTPEEEFSVGDKL 1809
Query: 63 FKTQSAPVSLSHI--MDASMEDLARCPGIVERKVKCLYDTFHEP 104
F+ QS P + S+ M SMED A P + K CL ++ P
Sbjct: 1810 FRQQSVPAASSYDSPMPPSMEDRAPLPPVPAEKFACLSPGYYSP 1853
>sp|P71517|PQQE_METEA Coenzyme PQQ synthesis protein E OS=Methylobacterium extorquens
(strain ATCC 14718 / DSM 1338 / AM1) GN=pqqE PE=3 SV=2
Length = 384
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 45 LNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKC----LYDT 100
L RRSA+ Q L T++A + + H+ + E AR P IVE KC LY
Sbjct: 39 LELDRRSAE-LDTQTWLRVLTEAAGLGVLHVHLSGGEPTAR-PDIVEITAKCAELGLYSN 96
Query: 101 FHEPFKPVVSRHPPIPETPSLKDVEPSSVNESALSAAFANYADKMGEKKNSSSQKQETET 160
+ + +L DV V S AN A+K+G KN+ QK +
Sbjct: 97 LI-----TSGVGGALAKLDALYDVGLDHVQLSVQGVDAAN-AEKIGGLKNAQPQKMQFAA 150
Query: 161 RIPE 164
R+ E
Sbjct: 151 RVTE 154
>sp|A9W3R0|PQQE_METEP Coenzyme PQQ synthesis protein E OS=Methylobacterium extorquens
(strain PA1) GN=pqqE PE=3 SV=1
Length = 384
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 45 LNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKC----LYDT 100
L RRSA+ Q L T++A + + H+ + E AR P IVE KC LY
Sbjct: 39 LELDRRSAE-LDTQTWLRVLTEAAGLGVLHVHLSGGEPTAR-PDIVEITAKCAELGLYSN 96
Query: 101 FHEPFKPVVSRHPPIPETPSLKDVEPSSVNESALSAAFANYADKMGEKKNSSSQKQETET 160
+ + +L DV V S AN A+K+G KN+ QK +
Sbjct: 97 LI-----TSGVGGALAKLDALYDVGLDHVQLSVQGVDAAN-AEKIGGLKNAQPQKMQFAA 150
Query: 161 RIPE 164
R+ E
Sbjct: 151 RVTE 154
>sp|B7KXC6|PQQE_METC4 Coenzyme PQQ synthesis protein E OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=pqqE PE=3
SV=1
Length = 384
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 45 LNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKC----LYDT 100
L RRSA+ Q L T++A + + H+ + E AR P IVE KC LY
Sbjct: 39 LELDRRSAE-LDTQTWLRVLTEAAGLGVLHVHLSGGEPTAR-PDIVEITAKCAELGLYSN 96
Query: 101 FHEPFKPVVSRHPPIPETPSLKDVEPSSVNESALSAAFANYADKMGEKKNSSSQKQETET 160
+ + +L DV V S AN A+K+G KN+ QK +
Sbjct: 97 LI-----TSGVGGALAKLDALYDVGLDHVQLSVQGVDAAN-AEKIGGLKNAQPQKMQFAA 150
Query: 161 RIPE 164
R+ E
Sbjct: 151 RVTE 154
>sp|O57524|APA12_ONCMY Apolipoprotein A-I-2 OS=Oncorhynchus mykiss PE=2 SV=1
Length = 262
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 68 APVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSRHPPIPETPSLKDVEPS 127
AP L H+ A ME +A+ +R + L DT ++ +K +S+ SL +++
Sbjct: 25 APSQLEHVKVAMMEYMAQVKETAQRSIDHLDDTEYKEYKVQLSQ--------SLDNLQQY 76
Query: 128 SVNESALSAAFANYADKMGEK--KNSSSQKQETETRIPENRSSILAKEAMAAELTHSLTM 185
+ S + A Y++ +G + + +++ + E + E RS + E AEL L
Sbjct: 77 A---QTASESLAPYSEAIGVQLTEATAAVRAEVMKDVEELRSQL---EPKRAELKEVLDK 130
Query: 186 HI--YRLLCPPHLDDV 199
HI YR P + D+
Sbjct: 131 HIDEYRKRLEPLIKDI 146
>sp|A4FUB7|GIN1_BOVIN Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus
GN=GIN1 PE=2 SV=1
Length = 499
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 104 PFKPVVSRHPPIPETPSLKDVEPSSVNESALSAAFANYADKMGEKKNSSSQKQETETRIP 163
P+ + +R+P +PE+ +++V+ + + A ADK+ E K +S + E
Sbjct: 262 PYFQMFNRNPYMPESSDIREVDGDNTSMFAKILDAIKEADKIMENKTTSVGQMENNNCHE 321
Query: 164 ENRSSILAKE 173
N+S I+ K+
Sbjct: 322 LNKSKIIVKK 331
>sp|Q4P9Z3|CLP1_USTMA Protein CLP1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CLP1
PE=3 SV=1
Length = 629
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
Query: 6 ALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKT 65
A S W + +V ST + +P + A +L LYL KR A+ R + L T
Sbjct: 73 AAVSSWRGAEIEVAGSASTEYLAEEPSPVYTAYSNLHLYLERKRIQARQALRADAKLLTT 132
Query: 66 QSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVVSR-HPPIPETPSLKDV 124
+ S ++D S I R +T +P + + P + P + +
Sbjct: 133 LA-----SSVLDPSY--------IAPRTTDPNTETESDPSGTAAATVYRPEGQGPRVMIL 179
Query: 125 EPSSVNESALSAAFANYA 142
P S +++L ANYA
Sbjct: 180 GPESAGKTSLVKLLANYA 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,565,460
Number of Sequences: 539616
Number of extensions: 2728730
Number of successful extensions: 8725
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 8693
Number of HSP's gapped (non-prelim): 61
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)