Query 041647
Match_columns 216
No_of_seqs 127 out of 299
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 15:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a1j_A DNA repair endonuclease 99.2 5.7E-12 1.9E-16 86.5 3.1 60 4-109 3-63 (63)
2 1z00_A DNA excision repair pro 99.1 7.2E-11 2.5E-15 83.0 5.9 64 3-110 17-80 (89)
3 2a1j_B DNA excision repair pro 99.1 6.1E-11 2.1E-15 84.2 4.2 61 3-107 30-90 (91)
4 1x2i_A HEF helicase/nuclease; 99.0 3.3E-10 1.1E-14 75.4 5.8 61 4-108 13-73 (75)
5 2bgw_A XPF endonuclease; hydro 98.9 1E-09 3.5E-14 87.0 4.7 58 5-106 162-219 (219)
6 1kft_A UVRC, excinuclease ABC 98.9 3.2E-09 1.1E-13 73.2 5.3 57 3-103 22-78 (78)
7 1z00_B DNA repair endonuclease 98.7 2.4E-09 8.3E-14 78.0 1.3 62 4-111 17-79 (84)
8 1ixr_A Holliday junction DNA h 98.1 3E-06 1E-10 68.9 6.1 58 5-106 72-132 (191)
9 1cuk_A RUVA protein; DNA repai 98.0 3.9E-06 1.3E-10 68.7 4.9 58 5-106 73-133 (203)
10 3c1y_A DNA integrity scanning 98.0 3.2E-06 1.1E-10 76.2 4.6 53 6-102 316-368 (377)
11 2owo_A DNA ligase; protein-DNA 97.9 9.2E-06 3.2E-10 77.0 5.4 53 9-105 516-568 (671)
12 1dgs_A DNA ligase; AMP complex 97.7 2.1E-05 7E-10 74.6 4.3 35 71-105 529-563 (667)
13 3sgi_A DNA ligase; HET: DNA AM 97.5 1.2E-05 4.2E-10 75.8 0.0 36 71-106 551-586 (615)
14 4glx_A DNA ligase; inhibitor, 97.5 9.6E-05 3.3E-09 69.1 5.1 35 71-105 534-568 (586)
15 1vq8_Y 50S ribosomal protein L 97.4 2.8E-05 9.6E-10 65.5 0.0 55 5-103 15-70 (241)
16 2ztd_A Holliday junction ATP-d 97.1 0.00057 1.9E-08 56.8 5.7 62 5-107 88-149 (212)
17 2duy_A Competence protein come 97.0 0.00052 1.8E-08 46.7 3.6 25 78-102 50-74 (75)
18 4gfj_A Topoisomerase V; helix- 96.6 0.0013 4.5E-08 62.8 4.0 48 6-98 469-516 (685)
19 2edu_A Kinesin-like protein KI 96.3 0.0033 1.1E-07 45.0 3.6 23 78-100 67-89 (98)
20 1wcn_A Transcription elongatio 96.0 0.012 4.1E-07 41.2 5.2 58 3-103 5-62 (70)
21 3arc_U Photosystem II 12 kDa e 95.9 0.0049 1.7E-07 46.0 3.0 33 75-109 20-52 (97)
22 1s5l_U Photosystem II 12 kDa e 95.2 0.015 5.1E-07 46.5 3.8 32 75-108 57-88 (134)
23 3c65_A Uvrabc system protein C 95.1 0.0036 1.2E-07 52.7 0.0 32 71-103 195-226 (226)
24 2w9m_A Polymerase X; SAXS, DNA 95.0 0.02 6.7E-07 52.0 4.5 57 6-105 98-161 (578)
25 2duy_A Competence protein come 95.0 0.019 6.4E-07 38.9 3.3 27 75-101 21-47 (75)
26 3b0x_A DNA polymerase beta fam 94.4 0.066 2.3E-06 48.4 6.3 52 5-97 93-144 (575)
27 1b22_A DNA repair protein RAD5 94.2 0.014 4.9E-07 44.4 1.3 32 71-102 48-79 (114)
28 2edu_A Kinesin-like protein KI 93.7 0.056 1.9E-06 38.5 3.5 33 73-105 32-66 (98)
29 1u9l_A Transcription elongatio 93.4 0.069 2.4E-06 37.6 3.5 30 71-100 29-58 (70)
30 3arc_U Photosystem II 12 kDa e 92.9 0.12 4E-06 38.5 4.3 25 78-102 49-73 (97)
31 2i5h_A Hypothetical protein AF 89.9 0.15 5.2E-06 43.2 2.5 31 77-107 128-159 (205)
32 2nrt_A Uvrabc system protein C 89.8 0.1 3.5E-06 43.9 1.3 30 71-102 190-220 (220)
33 1wud_A ATP-dependent DNA helic 89.6 0.19 6.5E-06 35.6 2.5 67 26-101 5-75 (89)
34 2ziu_A MUS81 protein; helix-ha 88.7 0.24 8.2E-06 41.0 2.8 22 5-26 237-258 (311)
35 2a1j_A DNA repair endonuclease 88.5 0.25 8.5E-06 33.4 2.3 22 81-102 4-25 (63)
36 2h56_A DNA-3-methyladenine gly 86.2 2.5 8.5E-05 34.3 7.4 84 18-104 73-162 (233)
37 2e1f_A Werner syndrome ATP-dep 86.1 0.66 2.2E-05 34.2 3.6 56 42-102 18-77 (103)
38 4b21_A Probable DNA-3-methylad 85.8 1.7 6E-05 35.5 6.3 84 18-104 82-174 (232)
39 1z00_A DNA excision repair pro 85.6 0.48 1.7E-05 32.7 2.5 27 76-102 14-40 (89)
40 2i1q_A DNA repair and recombin 85.2 1.9 6.4E-05 34.7 6.1 55 5-102 3-57 (322)
41 1s5l_U Photosystem II 12 kDa e 84.6 1.3 4.4E-05 35.4 4.8 22 78-99 86-107 (134)
42 2kv2_A Bloom syndrome protein; 83.7 1.1 3.7E-05 31.3 3.6 53 45-101 13-69 (85)
43 1kft_A UVRC, excinuclease ABC 83.5 0.42 1.4E-05 32.4 1.4 23 80-102 23-45 (78)
44 1z00_B DNA repair endonuclease 83.2 0.64 2.2E-05 33.5 2.3 22 81-102 18-39 (84)
45 2rhf_A DNA helicase RECQ; HRDC 82.9 0.93 3.2E-05 30.8 3.0 53 45-101 11-67 (77)
46 1z3e_B DNA-directed RNA polyme 82.2 1.1 3.8E-05 31.8 3.2 33 71-103 31-63 (73)
47 2a1j_B DNA excision repair pro 81.0 0.95 3.2E-05 31.5 2.5 25 78-102 29-53 (91)
48 2fmp_A DNA polymerase beta; nu 81.0 0.67 2.3E-05 39.8 2.1 23 78-100 95-117 (335)
49 2zj8_A DNA helicase, putative 80.7 2.6 8.7E-05 37.8 5.8 32 71-102 669-700 (720)
50 3s6i_A DNA-3-methyladenine gly 80.2 3.1 0.00011 33.8 5.6 81 20-104 74-163 (228)
51 1x2i_A HEF helicase/nuclease; 80.1 1.2 4E-05 28.9 2.5 23 81-103 14-36 (75)
52 3k4g_A DNA-directed RNA polyme 77.7 3.3 0.00011 30.5 4.6 34 71-104 34-67 (86)
53 1coo_A RNA polymerase alpha su 76.7 4.6 0.00016 30.4 5.3 50 46-104 30-79 (98)
54 1pzn_A RAD51, DNA repair and r 76.2 2.7 9.2E-05 35.3 4.3 32 71-102 58-89 (349)
55 2zix_A Crossover junction endo 76.0 1.3 4.3E-05 36.9 2.2 30 5-37 233-262 (307)
56 2yg9_A DNA-3-methyladenine gly 75.7 2.9 0.0001 33.8 4.2 83 18-104 83-170 (225)
57 2dgz_A Werner syndrome protein 74.4 0.74 2.5E-05 34.6 0.4 57 41-102 24-84 (113)
58 2ihm_A POL MU, DNA polymerase 74.2 1.6 5.6E-05 37.9 2.5 23 78-100 99-121 (360)
59 3gfk_B DNA-directed RNA polyme 73.3 2 7E-05 31.1 2.5 33 71-103 38-70 (79)
60 2jhn_A ALKA, 3-methyladenine D 72.9 5.8 0.0002 33.0 5.5 77 18-102 140-232 (295)
61 2xhi_A N-glycosylase/DNA lyase 72.9 8.4 0.00029 33.5 6.7 86 18-104 174-277 (360)
62 1jms_A Terminal deoxynucleotid 72.2 1.9 6.6E-05 37.9 2.5 23 78-100 118-140 (381)
63 3i0w_A 8-oxoguanine-DNA-glycos 72.1 17 0.00059 30.3 8.2 34 71-104 197-235 (290)
64 2bcq_A DNA polymerase lambda; 69.1 2.5 8.6E-05 36.3 2.5 20 81-100 96-115 (335)
65 3lda_A DNA repair protein RAD5 68.2 8 0.00027 33.7 5.5 32 71-102 106-137 (400)
66 2rrd_A BLM HRDC domain, HRDC d 67.3 3.3 0.00011 30.3 2.5 56 42-101 25-84 (101)
67 3bzc_A TEX; helix-turn-helix, 67.0 3.7 0.00013 39.8 3.4 32 77-108 504-537 (785)
68 1dgs_A DNA ligase; AMP complex 66.3 1.9 6.6E-05 41.0 1.4 19 9-27 445-463 (667)
69 4b21_A Probable DNA-3-methylad 66.3 8.7 0.0003 31.4 5.1 32 70-102 96-127 (232)
70 3psf_A Transcription elongatio 66.3 2.5 8.5E-05 42.2 2.2 30 79-108 715-747 (1030)
71 4dez_A POL IV 1, DNA polymeras 64.9 10 0.00035 31.7 5.3 30 71-102 201-230 (356)
72 1vq8_Y 50S ribosomal protein L 64.1 1.4 4.9E-05 36.9 0.0 23 78-100 12-34 (241)
73 4glx_A DNA ligase; inhibitor, 61.3 3.2 0.00011 38.9 1.8 32 71-102 470-501 (586)
74 1ixr_A Holliday junction DNA h 59.8 4.9 0.00017 32.4 2.4 22 82-103 73-94 (191)
75 3psi_A Transcription elongatio 59.4 3.9 0.00013 41.5 2.2 30 79-108 712-744 (1219)
76 4ecq_A DNA polymerase ETA; tra 58.5 6.2 0.00021 34.5 3.1 52 7-102 255-306 (435)
77 3vdp_A Recombination protein R 58.4 4.7 0.00016 34.1 2.2 25 71-99 20-44 (212)
78 1kea_A Possible G-T mismatches 57.5 23 0.00079 28.2 6.0 27 78-104 112-139 (221)
79 2owo_A DNA ligase; protein-DNA 57.4 8.2 0.00028 36.8 3.9 32 71-102 470-501 (671)
80 1cuk_A RUVA protein; DNA repai 55.0 5.7 0.0002 32.2 2.1 22 82-103 74-95 (203)
81 1vdd_A Recombination protein R 54.4 6 0.0002 33.9 2.2 23 72-98 7-29 (228)
82 2bcq_A DNA polymerase lambda; 54.3 7.9 0.00027 33.2 3.0 25 78-102 54-78 (335)
83 2w9m_A Polymerase X; SAXS, DNA 53.9 6.9 0.00024 35.5 2.6 22 79-100 95-116 (578)
84 1mpg_A ALKA, 3-methyladenine D 53.4 21 0.00071 29.3 5.2 25 80-104 206-231 (282)
85 3fhg_A Mjogg, N-glycosylase/DN 53.2 12 0.00041 29.6 3.6 23 78-100 114-136 (207)
86 2bgw_A XPF endonuclease; hydro 53.0 7.4 0.00025 30.4 2.4 23 81-103 162-184 (219)
87 2z43_A DNA repair and recombin 52.9 2.9 9.8E-05 34.1 0.0 32 71-102 35-66 (324)
88 1ci4_A Protein (barrier-TO-aut 49.7 17 0.00058 27.4 3.8 29 71-99 6-36 (89)
89 2fmp_A DNA polymerase beta; nu 48.0 11 0.00039 32.2 3.0 25 78-102 54-78 (335)
90 1dxs_A P53-like transcription 47.4 14 0.00047 27.6 2.9 51 40-100 8-60 (80)
91 1rxw_A Flap structure-specific 46.4 27 0.00093 29.2 5.0 22 81-102 235-256 (336)
92 2ihm_A POL MU, DNA polymerase 46.4 13 0.00044 32.2 3.1 25 78-102 58-82 (360)
93 3q8k_A Flap endonuclease 1; he 45.4 28 0.00097 29.8 5.0 47 17-102 207-253 (341)
94 2abk_A Endonuclease III; DNA-r 43.8 18 0.0006 28.5 3.2 31 71-101 60-93 (211)
95 2yg9_A DNA-3-methyladenine gly 43.3 30 0.001 27.8 4.6 32 70-102 93-124 (225)
96 2va8_A SSO2462, SKI2-type heli 43.1 25 0.00086 31.2 4.4 25 77-101 653-677 (715)
97 2nrt_A Uvrabc system protein C 42.7 13 0.00045 31.1 2.5 22 81-102 168-189 (220)
98 2ztd_A Holliday junction ATP-d 42.2 14 0.00048 30.5 2.5 23 81-103 88-110 (212)
99 3b0x_A DNA polymerase beta fam 41.3 14 0.00047 33.3 2.5 22 80-101 92-113 (575)
100 1pu6_A 3-methyladenine DNA gly 40.4 39 0.0013 26.9 4.8 40 63-102 60-102 (218)
101 4e9f_A Methyl-CPG-binding doma 39.2 46 0.0016 26.0 5.0 27 74-100 97-123 (161)
102 1orn_A Endonuclease III; DNA r 39.0 28 0.00096 27.9 3.8 27 78-104 110-137 (226)
103 4e9f_A Methyl-CPG-binding doma 38.8 24 0.00081 27.6 3.2 65 28-102 28-96 (161)
104 2h56_A DNA-3-methyladenine gly 38.8 28 0.00095 28.1 3.7 31 71-102 86-116 (233)
105 2csb_A Topoisomerase V, TOP61; 38.6 42 0.0014 31.0 5.3 27 71-97 436-463 (519)
106 3gqc_A DNA repair protein REV1 38.3 67 0.0023 29.2 6.5 30 71-102 338-367 (504)
107 1pu6_A 3-methyladenine DNA gly 38.0 27 0.00092 27.9 3.5 28 77-104 117-145 (218)
108 3ory_A Flap endonuclease 1; hy 37.5 46 0.0016 28.9 5.2 20 83-102 252-272 (363)
109 1kea_A Possible G-T mismatches 37.0 43 0.0015 26.6 4.5 32 71-102 66-100 (221)
110 1exn_A 5'-exonuclease, 5'-nucl 36.9 24 0.00081 30.2 3.2 33 70-102 192-224 (290)
111 3bzc_A TEX; helix-turn-helix, 36.7 18 0.00061 35.1 2.6 26 78-103 535-560 (785)
112 3u5c_S 40S ribosomal protein S 36.6 32 0.0011 27.3 3.7 38 2-39 27-71 (146)
113 2izo_A FEN1, flap structure-sp 36.6 41 0.0014 28.4 4.6 22 81-102 233-255 (346)
114 1orn_A Endonuclease III; DNA r 36.6 32 0.0011 27.6 3.8 32 71-102 64-98 (226)
115 2abk_A Endonuclease III; DNA-r 36.6 29 0.00098 27.3 3.4 27 78-104 106-133 (211)
116 2kz3_A Putative uncharacterize 36.2 24 0.00083 25.3 2.7 37 71-107 27-63 (83)
117 3s6i_A DNA-3-methyladenine gly 35.7 37 0.0013 27.4 4.0 32 70-102 85-116 (228)
118 3osn_A DNA polymerase IOTA; ho 35.4 45 0.0015 29.1 4.8 30 71-102 257-286 (420)
119 2kp7_A Crossover junction endo 35.3 27 0.00094 25.1 2.9 25 78-102 55-79 (87)
120 1v5w_A DMC1, meiotic recombina 35.1 8 0.00027 32.0 0.0 32 71-102 50-81 (343)
121 4gfj_A Topoisomerase V; helix- 34.8 18 0.00063 34.9 2.4 22 81-102 468-489 (685)
122 1ul1_X Flap endonuclease-1; pr 34.7 54 0.0019 28.2 5.1 47 17-102 207-253 (379)
123 1jms_A Terminal deoxynucleotid 34.4 25 0.00085 30.8 3.0 25 78-102 77-101 (381)
124 1kg2_A A/G-specific adenine gl 34.3 34 0.0012 27.2 3.6 27 78-104 106-133 (225)
125 3c65_A Uvrabc system protein C 33.8 8.7 0.0003 32.2 0.0 24 80-103 172-195 (226)
126 3i0w_A 8-oxoguanine-DNA-glycos 33.8 28 0.00095 29.0 3.1 31 70-102 159-189 (290)
127 3saf_A Exosome component 10; e 33.7 24 0.00081 31.4 2.8 69 28-102 323-392 (428)
128 3n0u_A Probable N-glycosylase/ 33.5 27 0.00093 28.5 2.9 66 78-148 126-201 (219)
129 3mfi_A DNA polymerase ETA; DNA 33.2 53 0.0018 29.8 5.0 22 6-27 308-329 (520)
130 1b43_A Protein (FEN-1); nuclea 33.0 51 0.0017 27.6 4.6 18 85-102 241-258 (340)
131 3r8n_M 30S ribosomal protein S 32.4 22 0.00074 27.2 2.0 38 2-39 13-57 (114)
132 3im1_A Protein SNU246, PRE-mRN 32.3 62 0.0021 26.7 4.9 32 71-102 180-211 (328)
133 3b42_A GSU0935, methyl-accepti 32.2 26 0.00089 25.6 2.4 23 191-213 108-130 (135)
134 2xzm_M RPS18E; ribosome, trans 32.2 27 0.00092 28.0 2.6 37 3-39 28-71 (155)
135 3fhf_A Mjogg, N-glycosylase/DN 31.9 26 0.00087 28.6 2.5 66 78-148 121-196 (214)
136 2i5h_A Hypothetical protein AF 31.8 29 0.001 29.3 2.9 21 4-24 131-151 (205)
137 3fsp_A A/G-specific adenine gl 31.7 38 0.0013 28.5 3.6 28 78-105 115-143 (369)
138 2vqe_M 30S ribosomal protein S 28.9 19 0.00066 28.0 1.2 37 3-39 15-58 (126)
139 1a76_A Flap endonuclease-1 pro 28.7 70 0.0024 26.6 4.7 15 85-99 229-243 (326)
140 3bqs_A Uncharacterized protein 28.7 26 0.00088 25.6 1.8 22 79-100 2-23 (93)
141 1kg2_A A/G-specific adenine gl 27.2 1.1E+02 0.0036 24.3 5.3 31 71-102 61-94 (225)
142 3bq0_A POL IV, DBH, DNA polyme 27.1 29 0.00098 28.9 2.0 74 71-149 202-277 (354)
143 3mab_A Uncharacterized protein 26.2 28 0.00096 25.5 1.6 22 79-100 2-23 (93)
144 1rxw_A Flap structure-specific 25.7 34 0.0012 28.7 2.3 21 6-26 236-256 (336)
145 3iz6_M 40S ribosomal protein S 25.4 40 0.0014 26.9 2.5 38 2-39 25-69 (152)
146 3maj_A DNA processing chain A; 25.0 31 0.0011 30.9 2.0 23 82-104 27-49 (382)
147 2y9u_A Tumor protein 63; apopt 24.9 43 0.0015 23.3 2.3 32 50-91 18-49 (69)
148 2va8_A SSO2462, SKI2-type heli 24.5 28 0.00096 30.9 1.6 26 71-97 680-707 (715)
149 3j20_O 30S ribosomal protein S 24.4 36 0.0012 27.1 2.0 40 2-41 20-66 (148)
150 1yt3_A Ribonuclease D, RNAse D 24.3 69 0.0024 26.9 3.9 56 45-102 220-276 (375)
151 1b43_A Protein (FEN-1); nuclea 23.8 43 0.0015 28.1 2.5 18 9-26 241-258 (340)
152 2jhn_A ALKA, 3-methyladenine D 23.8 49 0.0017 27.4 2.8 33 70-103 162-194 (295)
153 3psf_A Transcription elongatio 22.8 49 0.0017 33.1 3.1 55 4-103 716-770 (1030)
154 2zj8_A DNA helicase, putative 22.7 91 0.0031 27.8 4.5 22 79-100 644-665 (720)
155 1jx4_A DNA polymerase IV (fami 22.2 31 0.0011 28.6 1.4 30 71-102 201-230 (352)
156 1mpg_A ALKA, 3-methyladenine D 21.1 1.1E+02 0.0037 25.0 4.3 31 71-102 157-187 (282)
157 2ziu_A MUS81 protein; helix-ha 20.7 42 0.0014 27.6 1.8 24 80-103 236-259 (311)
158 3bbn_M Ribosomal protein S13; 20.5 34 0.0012 27.5 1.2 26 2-27 59-84 (145)
159 3n5n_X A/G-specific adenine DN 20.0 76 0.0026 27.0 3.3 30 79-108 126-157 (287)
No 1
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=99.20 E-value=5.7e-12 Score=86.50 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=56.4
Q ss_pred cccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhh
Q 041647 4 THALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDL 83 (216)
Q Consensus 4 t~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdL 83 (216)
.+.|++|+||++++...|+.+|| |+++|..||.|||
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fg--------------------------------------------s~~~i~~As~eeL 38 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVK--------------------------------------------NIAELAALSQDEL 38 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCS--------------------------------------------SHHHHHTCCHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHHHcC--------------------------------------------CHHHHHHCCHHHH
Confidence 46789999999999999999999 9999999999999
Q ss_pred ccCCCCcHHH-HHHHHHHhcCCCCCCC
Q 041647 84 ARCPGIVERK-VKCLYDTFHEPFKPVV 109 (216)
Q Consensus 84 A~cPGig~~K-vk~L~d~fhePF~~~~ 109 (216)
+.+ ||..+ |+.||+.||+||.+.|
T Consensus 39 ~~v--ig~~~~A~~I~~~l~~~~~~~~ 63 (63)
T 2a1j_A 39 TSI--LGNAANAKQLYDFIHTSFAEVV 63 (63)
T ss_dssp HHH--HSCHHHHHHHHHHHHCCCCCCC
T ss_pred HHH--cCchHHHHHHHHHHhccccccC
Confidence 999 88999 9999999999998753
No 2
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=99.13 E-value=7.2e-11 Score=83.04 Aligned_cols=64 Identities=50% Similarity=0.706 Sum_probs=59.7
Q ss_pred ccccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhh
Q 041647 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMED 82 (216)
Q Consensus 3 lt~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~Ed 82 (216)
+..+|+.|+||++..+..|++.|| |++.|++++.++
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~fg--------------------------------------------sl~~l~~a~~~e 52 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFG--------------------------------------------SLEQLIAASRED 52 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTC--------------------------------------------BHHHHHHCCHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCC--------------------------------------------CHHHHHhCCHHH
Confidence 456799999999999999999999 999999999999
Q ss_pred hccCCCCcHHHHHHHHHHhcCCCCCCCC
Q 041647 83 LARCPGIVERKVKCLYDTFHEPFKPVVS 110 (216)
Q Consensus 83 LA~cPGig~~Kvk~L~d~fhePF~~~~s 110 (216)
|..+||||+.+++.|++.|++||.....
T Consensus 53 L~~i~GIG~~~a~~I~~~l~~~~~~~~~ 80 (89)
T 1z00_A 53 LALCPGLGPQKARRLFDVLHEPFLKVPG 80 (89)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSCSSSCSS
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhccchh
Confidence 9999999999999999999999986544
No 3
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=99.09 E-value=6.1e-11 Score=84.18 Aligned_cols=61 Identities=51% Similarity=0.730 Sum_probs=57.8
Q ss_pred ccccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhh
Q 041647 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMED 82 (216)
Q Consensus 3 lt~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~Ed 82 (216)
+..+|+.|+||++..+..|+..|| |++.|++++.++
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~fg--------------------------------------------s~~~l~~as~~e 65 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTTFG--------------------------------------------SLEQLIAASRED 65 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHS--------------------------------------------SHHHHHSCCHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCC--------------------------------------------CHHHHHhCCHHH
Confidence 456789999999999999999999 999999999999
Q ss_pred hccCCCCcHHHHHHHHHHhcCCCCC
Q 041647 83 LARCPGIVERKVKCLYDTFHEPFKP 107 (216)
Q Consensus 83 LA~cPGig~~Kvk~L~d~fhePF~~ 107 (216)
|..+||||+++++.|++.|++||..
T Consensus 66 L~~i~GIG~~~a~~I~~~l~~~~~~ 90 (91)
T 2a1j_B 66 LALCPGLGPQKARRLFDVLHEPFLK 90 (91)
T ss_dssp HHTSSSCCSHHHHHHHHHHHSCSCC
T ss_pred HHhCCCCCHHHHHHHHHHHhhhhcC
Confidence 9999999999999999999999985
No 4
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=99.04 E-value=3.3e-10 Score=75.36 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=56.7
Q ss_pred cccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhh
Q 041647 4 THALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDL 83 (216)
Q Consensus 4 t~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdL 83 (216)
...|+.|+||++..+..|+..|| |+..|++++.++|
T Consensus 13 ~~~L~~i~giG~~~a~~Ll~~fg--------------------------------------------s~~~l~~a~~~~L 48 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLKHFG--------------------------------------------SVERVFTASVAEL 48 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--------------------------------------------SHHHHHHCCHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHcC--------------------------------------------CHHHHHhCCHHHH
Confidence 34689999999999999999999 9999999999999
Q ss_pred ccCCCCcHHHHHHHHHHhcCCCCCC
Q 041647 84 ARCPGIVERKVKCLYDTFHEPFKPV 108 (216)
Q Consensus 84 A~cPGig~~Kvk~L~d~fhePF~~~ 108 (216)
..+||||+.++..|++.|++||...
T Consensus 49 ~~i~Gig~~~a~~i~~~~~~~~~~~ 73 (75)
T 1x2i_A 49 MKVEGIGEKIAKEIRRVITAPYIED 73 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHHSCCCC-
T ss_pred hcCCCCCHHHHHHHHHHHhCccccc
Confidence 9999999999999999999998753
No 5
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=98.90 E-value=1e-09 Score=87.00 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=55.5
Q ss_pred ccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhc
Q 041647 5 HALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLA 84 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA 84 (216)
..|++|+||+++.+..|+++|| |+.+|++|+.|+|.
T Consensus 162 ~~L~~i~gVg~~~a~~Ll~~fg--------------------------------------------s~~~l~~a~~e~L~ 197 (219)
T 2bgw_A 162 YILQSFPGIGRRTAERILERFG--------------------------------------------SLERFFTASKAEIS 197 (219)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHS--------------------------------------------SHHHHTTCCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcC--------------------------------------------CHHHHHhCCHHHHh
Confidence 4688999999999999999999 99999999999999
Q ss_pred cCCCCcHHHHHHHHHHhcCCCC
Q 041647 85 RCPGIVERKVKCLYDTFHEPFK 106 (216)
Q Consensus 85 ~cPGig~~Kvk~L~d~fhePF~ 106 (216)
.+||||+++++.|++.|++||+
T Consensus 198 ~v~GiG~~~a~~i~~~~~~~~~ 219 (219)
T 2bgw_A 198 KVEGIGEKRAEEIKKILMTPYK 219 (219)
T ss_dssp HSTTCCHHHHHHHHHHHHSCCC
T ss_pred hCCCCCHHHHHHHHHHHhcccC
Confidence 9999999999999999999984
No 6
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=98.85 E-value=3.2e-09 Score=73.21 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=53.3
Q ss_pred ccccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhh
Q 041647 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMED 82 (216)
Q Consensus 3 lt~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~Ed 82 (216)
+...|+.|+||++..+..|+..|| |++.|++++.++
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~fg--------------------------------------------sl~~l~~a~~ee 57 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKYMG--------------------------------------------GLQGLRNASVEE 57 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHHHS--------------------------------------------CHHHHHHCCHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcC--------------------------------------------CHHHHHHCCHHH
Confidence 456799999999999999999999 999999999999
Q ss_pred hccCCCCcHHHHHHHHHHhcC
Q 041647 83 LARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 83 LA~cPGig~~Kvk~L~d~fhe 103 (216)
|..+||||+++++.|++.|++
T Consensus 58 L~~i~GIG~~~a~~I~~~~~~ 78 (78)
T 1kft_A 58 IAKVPGISQGLAEKIFWSLKH 78 (78)
T ss_dssp HTTSSSTTSHHHHHHHHHHTC
T ss_pred HHHCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999874
No 7
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=98.72 E-value=2.4e-09 Score=78.02 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=56.4
Q ss_pred cccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhh
Q 041647 4 THALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDL 83 (216)
Q Consensus 4 t~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdL 83 (216)
.+.|.+|+||++.....|+.+|| |+++|..||.|||
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~Fg--------------------------------------------Sl~~i~~AS~eEL 52 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVK--------------------------------------------NIAELAALSQDEL 52 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSS--------------------------------------------CHHHHHHSCHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHcC--------------------------------------------CHHHHHHCCHHHH
Confidence 35789999999999999999999 9999999999999
Q ss_pred ccCCCCcHHH-HHHHHHHhcCCCCCCCCC
Q 041647 84 ARCPGIVERK-VKCLYDTFHEPFKPVVSR 111 (216)
Q Consensus 84 A~cPGig~~K-vk~L~d~fhePF~~~~sr 111 (216)
+.+ ||... |+.||+.||.+|...++.
T Consensus 53 ~~v--ig~~~~A~~I~~~l~~~~~~~~~~ 79 (84)
T 1z00_B 53 TSI--LGNAANAKQLYDFIHTSFAEVVSK 79 (84)
T ss_dssp HHH--HSCHHHHHHHHHHHTSBHHHHTTS
T ss_pred HHH--hCchHHHHHHHHHHHhhhhhhhhc
Confidence 999 88888 999999999988755443
No 8
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=98.15 E-value=3e-06 Score=68.94 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=53.3
Q ss_pred ccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhc---HHHHHhCCHh
Q 041647 5 HALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVS---LSHIMDASME 81 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~S---L~~Im~AS~E 81 (216)
..|.+|+||++.-+..|+++|| + ...|.+++.+
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~f~--------------------------------------------~~~l~~aI~~~d~~ 107 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSALP--------------------------------------------PRLLARALLEGDAR 107 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHHSC--------------------------------------------HHHHHHHHHTTCHH
T ss_pred HHHhcCCCcCHHHHHHHHHhCC--------------------------------------------hHHHHHHHHhCCHH
Confidence 3588999999999999999999 5 6778999999
Q ss_pred hhccCCCCcHHHHHHHHHHhcCCCC
Q 041647 82 DLARCPGIVERKVKCLYDTFHEPFK 106 (216)
Q Consensus 82 dLA~cPGig~~Kvk~L~d~fhePF~ 106 (216)
+|.++||||+++|++|+..|++-+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk~k~~ 132 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELKGKVP 132 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHTTTSC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999997764
No 9
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=98.04 E-value=3.9e-06 Score=68.68 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=52.7
Q ss_pred ccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhc---HHHHHhCCHh
Q 041647 5 HALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVS---LSHIMDASME 81 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~S---L~~Im~AS~E 81 (216)
..|.+|+||++.-+..|+++|| + ...|.+++.+
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~f~--------------------------------------------~~~l~~aI~~~d~~ 108 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSGMS--------------------------------------------AQQFVNAVEREEVG 108 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHHSC--------------------------------------------HHHHHHHHHTTCHH
T ss_pred HHHhcCCCcCHHHHHHHHhhCC--------------------------------------------hHHHHHHHHhCCHH
Confidence 3588999999999999999999 6 7789999999
Q ss_pred hhccCCCCcHHHHHHHHHHhcCCCC
Q 041647 82 DLARCPGIVERKVKCLYDTFHEPFK 106 (216)
Q Consensus 82 dLA~cPGig~~Kvk~L~d~fhePF~ 106 (216)
+|.++||||+++|++|+..|+.-+.
T Consensus 109 ~L~~vpGIG~K~A~rI~~elk~kl~ 133 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEMKDRFK 133 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHGG
T ss_pred HHhhCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999986553
No 10
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=98.04 E-value=3.2e-06 Score=76.18 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=50.4
Q ss_pred cccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhcc
Q 041647 6 ALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLAR 85 (216)
Q Consensus 6 aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~ 85 (216)
.|.+|+.|.+..+.+|+.+|| ||+.||+||.|||..
T Consensus 316 iLs~IPrl~~~iae~Lv~~FG--------------------------------------------sLq~Il~AS~eEL~~ 351 (377)
T 3c1y_A 316 LLKTVARIPLSIGYNVVRMFK--------------------------------------------TLDQISKASVEDLKK 351 (377)
T ss_dssp HHHHTSCCCHHHHHHHHHHHC--------------------------------------------SHHHHTTCCHHHHTT
T ss_pred HHhhCCCCCHHHHHHHHHHhC--------------------------------------------CHHHHHhCCHHHHHh
Confidence 477899999999999999999 999999999999999
Q ss_pred CCCCcHHHHHHHHHHhc
Q 041647 86 CPGIVERKVKCLYDTFH 102 (216)
Q Consensus 86 cPGig~~Kvk~L~d~fh 102 (216)
+.|||+.+|+.+++.+.
T Consensus 352 VeGIGe~rAr~IregL~ 368 (377)
T 3c1y_A 352 VEGIGEKRARAISESIS 368 (377)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHH
Confidence 99999999999999874
No 11
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.91 E-value=9.2e-06 Score=77.01 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=49.8
Q ss_pred ccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCC
Q 041647 9 SVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPG 88 (216)
Q Consensus 9 sV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPG 88 (216)
.|++|+++.+..|+.+|| |++.|+.|+.|+|..+||
T Consensus 516 gi~~VG~~~Ak~La~~Fg--------------------------------------------sl~~l~~As~eeL~~i~G 551 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFG--------------------------------------------TLEALEAASIEELQKVPD 551 (671)
T ss_dssp TCTTCCHHHHHHHHHHHC--------------------------------------------SHHHHHTCCHHHHTTSTT
T ss_pred cccCccHHHHHHHHHHcC--------------------------------------------CHHHHHhCCHHHHhhcCC
Confidence 688899999999999999 999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCC
Q 041647 89 IVERKVKCLYDTFHEPF 105 (216)
Q Consensus 89 ig~~Kvk~L~d~fhePF 105 (216)
||+..|+.|++.|++|.
T Consensus 552 IG~~~A~sI~~ff~~~~ 568 (671)
T 2owo_A 552 VGIVVASHVHNFFAEES 568 (671)
T ss_dssp CCHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHhHH
Confidence 99999999999999875
No 12
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.71 E-value=2.1e-05 Score=74.63 Aligned_cols=35 Identities=20% Similarity=0.505 Sum_probs=33.9
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcCCC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhePF 105 (216)
|++.|+.|+.|+|..+||||+..|+.|++.|++|.
T Consensus 529 sl~~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~~ 563 (667)
T 1dgs_A 529 TMDRLLEASLEELIEVEEVGELTARAILETLKDPA 563 (667)
T ss_dssp BHHHHTTCCHHHHHTSTTCCHHHHHHHHHHHHCHH
T ss_pred CHHHHHhCCHHHHHhccCcCHHHHHHHHHHHhhHH
Confidence 89999999999999999999999999999999886
No 13
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=97.53 E-value=1.2e-05 Score=75.75 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcCCCC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFK 106 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhePF~ 106 (216)
|++.|+.|+.|+|..+||||+..|+.|++.|++|..
T Consensus 551 sle~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n 586 (615)
T 3sgi_A 551 SLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWH 586 (615)
T ss_dssp ------------------------------------
T ss_pred CHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHHH
Confidence 999999999999999999999999999999998854
No 14
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=97.47 E-value=9.6e-05 Score=69.07 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=33.3
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcCCC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPF 105 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhePF 105 (216)
|++.|++|+.|+|..+||||+..|+.|++.|++|-
T Consensus 534 sl~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~ 568 (586)
T 4glx_A 534 TLEALEAASIEELQKVPDVGIVVASHVHNFFAEES 568 (586)
T ss_dssp SHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHH
T ss_pred CHHHHHccCHHHHhcCCCccHHHHHHHHHHHcCHH
Confidence 89999999999999999999999999999999763
No 15
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=97.35 E-value=2.8e-05 Score=65.45 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred ccccccCCcChhhHHHHHhh-cCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhh
Q 041647 5 HALTSVWSVNKTDVVNLGST-SGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDL 83 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlst-fG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdL 83 (216)
..|.+|+||++..+..|++. |+ |++.|..++.++|
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~--------------------------------------------sve~L~~a~~~eL 50 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFE--------------------------------------------SVEDVRGADQSAL 50 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCC--------------------------------------------CHHHHHhCCHHHH
Confidence 36889999999999999998 77 8999999999999
Q ss_pred ccCCCCcHHHHHHHHHHhcC
Q 041647 84 ARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 84 A~cPGig~~Kvk~L~d~fhe 103 (216)
+.+||||++++++|++.++.
T Consensus 51 ~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 51 ADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp --------------------
T ss_pred HhccCCCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 16
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=97.14 E-value=0.00057 Score=56.77 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=51.8
Q ss_pred ccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhc
Q 041647 5 HALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLA 84 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA 84 (216)
.-|.+|+||++.-+..+++.|| +++| ...|++.+.+.|.
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~~----~~~l-------------------------------------~~aI~~~d~~~L~ 126 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHD----APAL-------------------------------------RQVLADGNVAALT 126 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSC----HHHH-------------------------------------HHHHHTTCHHHHH
T ss_pred HHhcCcCCcCHHHHHHHHHhCC----HHHH-------------------------------------HHHHHhCCHHHHh
Confidence 3477899999999999999999 2211 2357889999999
Q ss_pred cCCCCcHHHHHHHHHHhcCCCCC
Q 041647 85 RCPGIVERKVKCLYDTFHEPFKP 107 (216)
Q Consensus 85 ~cPGig~~Kvk~L~d~fhePF~~ 107 (216)
++||||++++++|...+.+-+..
T Consensus 127 ~vpGIG~KtA~rIi~elk~kl~~ 149 (212)
T 2ztd_A 127 RVPGIGKRGAERMVLELRDKVGV 149 (212)
T ss_dssp TSTTCCHHHHHHHHHHHTTTCC-
T ss_pred hCCCCCHHHHHHHHHHHHHhhcc
Confidence 99999999999999999987743
No 17
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.02 E-value=0.00052 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
++.+||..+||||++++++|++.|+
T Consensus 50 ~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 50 ARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp SSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred CCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 7788999999999999999987764
No 18
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=96.60 E-value=0.0013 Score=62.81 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=45.4
Q ss_pred cccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhcc
Q 041647 6 ALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLAR 85 (216)
Q Consensus 6 aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~ 85 (216)
.|++|+||+...+..||..|| |++.+|.|+.+|| +
T Consensus 469 mLtAIaGIGp~tAeRLLEkFG--------------------------------------------SVe~Vm~AteDEL-R 503 (685)
T 4gfj_A 469 SLISIRGIDRERAERLLKKYG--------------------------------------------GYSKVREAGVEEL-R 503 (685)
T ss_dssp HHHTSTTCCHHHHHHHHHHHT--------------------------------------------SHHHHHHSCHHHH-H
T ss_pred eeeccCCCCHHHHHHHHHHhc--------------------------------------------CHHHHHhCCHHHH-H
Confidence 588999999999999999999 9999999999999 5
Q ss_pred CCCCcHHHHHHHH
Q 041647 86 CPGIVERKVKCLY 98 (216)
Q Consensus 86 cPGig~~Kvk~L~ 98 (216)
..|||+.|+++|.
T Consensus 504 edGIGekqarrI~ 516 (685)
T 4gfj_A 504 EDGLTDAQIRELK 516 (685)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HccccHHHHHHHh
Confidence 5999999999985
No 19
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=96.28 E-value=0.0033 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.5
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
.+.+||.++||||++++++|++.
T Consensus 67 ~s~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 67 SQVEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp SSGGGGGGSTTCCHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHC
Confidence 67789999999999999999865
No 20
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.99 E-value=0.012 Score=41.19 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=49.0
Q ss_pred ccccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhh
Q 041647 3 LTHALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMED 82 (216)
Q Consensus 3 lt~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~Ed 82 (216)
+.+-|..++||++.++..|.. -|+| |+++|..++.++
T Consensus 5 ~~~~l~~L~Gi~~~~~~kL~e-~Gi~------------------------------------------TvedlA~~~~~e 41 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLAFKLAA-RGVC------------------------------------------TLEDLAEQGIDD 41 (70)
T ss_dssp CCHHHHSSTTCCHHHHHHHHT-TTCC------------------------------------------SHHHHHTSCHHH
T ss_pred hhhHHHHcCCCCHHHHHHHHH-cCCC------------------------------------------cHHHHHcCCHHH
Confidence 445677889999999988765 4532 999999999999
Q ss_pred hccCCCCcHHHHHHHHHHhcC
Q 041647 83 LARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 83 LA~cPGig~~Kvk~L~d~fhe 103 (216)
|..++||++.||..|...-..
T Consensus 42 L~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 42 LADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHH
Confidence 999999999999999987665
No 21
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=95.87 E-value=0.0049 Score=46.02 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHhCCHhhhccCCCCcHHHHHHHHHHhcCCCCCCC
Q 041647 75 IMDASMEDLARCPGIVERKVKCLYDTFHEPFKPVV 109 (216)
Q Consensus 75 Im~AS~EdLA~cPGig~~Kvk~L~d~fhePF~~~~ 109 (216)
|=.||.++|..+||||+.+|++|.+ |.||..+.
T Consensus 20 iNtAs~~eL~~lpGIG~~~A~~IV~--~GpF~s~e 52 (97)
T 3arc_U 20 LNNTNIAAFIQYRGLYPTLAKLIVK--NAPYESVE 52 (97)
T ss_dssp TTTSCGGGGGGSTTCTTHHHHHHHH--HCCCSSGG
T ss_pred CCcCCHHHHhHCCCCCHHHHHHHHH--cCCCCCHH
Confidence 3569999999999999999999999 88887653
No 22
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=95.20 E-value=0.015 Score=46.50 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=28.5
Q ss_pred HHhCCHhhhccCCCCcHHHHHHHHHHhcCCCCCC
Q 041647 75 IMDASMEDLARCPGIVERKVKCLYDTFHEPFKPV 108 (216)
Q Consensus 75 Im~AS~EdLA~cPGig~~Kvk~L~d~fhePF~~~ 108 (216)
|=.|+.++|..+||||+.||+.|.+ |-||+.+
T Consensus 57 iNtA~~~eL~~LpGiGp~~A~~II~--~GpF~sv 88 (134)
T 1s5l_U 57 LNNTNIAAFIQYRGLYPTLAKLIVK--NAPYESV 88 (134)
T ss_dssp TTTSCGGGGGGSTTCTHHHHHHHHH--TCCCSSG
T ss_pred CcccCHHHHHHCCCCCHHHHHHHHH--cCCCCCH
Confidence 4579999999999999999999994 8899865
No 23
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=95.11 E-value=0.0036 Score=52.66 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=0.0
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
|++.|++||.|||+.+ |||+.+|+.|++.||+
T Consensus 195 Sl~~i~~As~eeL~~V-GIG~~~A~~I~~~f~~ 226 (226)
T 3c65_A 195 SVKKMKEATVEELQRA-NIPRAVAEKIYEKLHE 226 (226)
T ss_dssp ---------------------------------
T ss_pred CHHHHHhCCHHHHHHc-CCCHHHHHHHHHHhhC
Confidence 7889999999999999 9999999999999974
No 24
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=95.04 E-value=0.02 Score=52.04 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=40.4
Q ss_pred cccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhC-CHhhhc
Q 041647 6 ALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDA-SMEDLA 84 (216)
Q Consensus 6 aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~A-S~EdLA 84 (216)
.|.+|+||+..-+..|++. | +. |+++|..| ....|.
T Consensus 98 ~L~~v~GVGpk~A~~i~~~-G-~~-----------------------------------------s~edL~~a~~~~~L~ 134 (578)
T 2w9m_A 98 DLLGVRGLGPKKIRSLWLA-G-ID-----------------------------------------SLERLREAAESGELA 134 (578)
T ss_dssp HHTTSTTCCHHHHHHHHHT-T-CC-----------------------------------------SHHHHHHHHHHTTTT
T ss_pred HHhCCCCcCHHHHHHHHHc-C-CC-----------------------------------------CHHHHHHHHhhCccc
Confidence 3667777777777777776 5 23 55555544 334889
Q ss_pred cCCCCcHHHHHHH------HHHhcCCC
Q 041647 85 RCPGIVERKVKCL------YDTFHEPF 105 (216)
Q Consensus 85 ~cPGig~~Kvk~L------~d~fhePF 105 (216)
++||||++.+++| |+-+.+++
T Consensus 135 ~~~GiG~Ktaq~I~~~l~~~~~~~~r~ 161 (578)
T 2w9m_A 135 GLKGFGAKSAATILENVVFLFEARQRQ 161 (578)
T ss_dssp TSTTCCHHHHHHHHHHHHHHHHHCSSE
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCe
Confidence 9999999999998 55665554
No 25
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=95.00 E-value=0.019 Score=38.92 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.3
Q ss_pred HHhCCHhhhccCCCCcHHHHHHHHHHh
Q 041647 75 IMDASMEDLARCPGIVERKVKCLYDTF 101 (216)
Q Consensus 75 Im~AS~EdLA~cPGig~~Kvk~L~d~f 101 (216)
|-.|+.++|..+||||+..+++|.+.+
T Consensus 21 iN~a~~~~L~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 21 LNEASLEELMALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TTTCCHHHHTTSTTCCHHHHHHHHHTC
T ss_pred hhhCCHHHHHhCCCCCHHHHHHHHHHc
Confidence 345789999999999999999999987
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=94.40 E-value=0.066 Score=48.35 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=39.2
Q ss_pred ccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhc
Q 041647 5 HALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLA 84 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA 84 (216)
..|.+|+||++.-+..+++..| +.++++|-++.. .+||.
T Consensus 93 ~~l~~v~GvGpk~A~~~~~~lg-~~~~~~l~~a~~----------------------------------------~~~l~ 131 (575)
T 3b0x_A 93 LEVMEVPGVGPKTARLLYEGLG-IDSLEKLKAALD----------------------------------------RGDLT 131 (575)
T ss_dssp HHHHTSTTTCHHHHHHHHHTSC-CCSHHHHHHHHH----------------------------------------HTGGG
T ss_pred HHHhcCCCcCHHHHHHHHHhcC-CCCHHHHHHHHH----------------------------------------cCCcc
Confidence 3478899999999999998877 344444443322 25789
Q ss_pred cCCCCcHHHHHHH
Q 041647 85 RCPGIVERKVKCL 97 (216)
Q Consensus 85 ~cPGig~~Kvk~L 97 (216)
++||||++.+++|
T Consensus 132 ~~~GiG~k~a~~i 144 (575)
T 3b0x_A 132 RLKGFGPKRAERI 144 (575)
T ss_dssp GSTTCCHHHHHHH
T ss_pred cCCCCCccHHHHH
Confidence 9999999999998
No 27
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=94.21 E-value=0.014 Score=44.40 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=29.4
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|++.|..++.++|..++||++.||..|.+.-.
T Consensus 48 Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 48 TVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp SGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred cHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 78888999999999999999999999988765
No 28
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.66 E-value=0.056 Score=38.54 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=28.9
Q ss_pred HHHHhCCHhhhccCCCCcHHHHHHHHHHhc--CCC
Q 041647 73 SHIMDASMEDLARCPGIVERKVKCLYDTFH--EPF 105 (216)
Q Consensus 73 ~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh--ePF 105 (216)
-+|-.++.++|..+||||+..|+.|.+.+. .+|
T Consensus 32 i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~~g~f 66 (98)
T 2edu_A 32 DLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPF 66 (98)
T ss_dssp HHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHHCCC
T ss_pred eehhhCCHHHHHHCCCCCHHHHHHHHHHHHhcCCc
Confidence 345678999999999999999999999984 688
No 29
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=93.38 E-value=0.069 Score=37.64 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=28.2
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHH
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
|++.|..++.++|..++||.+.||..|.+.
T Consensus 29 tve~vA~~~~~eL~~I~G~dE~~a~~l~~~ 58 (70)
T 1u9l_A 29 TLEELAYVPMKELLEIEGLDEPTVEALRER 58 (70)
T ss_dssp CHHHHHHSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred cHHHHHcCCHHHHhhccCCCHHHHHHHHHH
Confidence 999999999999999999999999998764
No 30
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=92.89 E-value=0.12 Score=38.50 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=21.7
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.|.|||..++|||+.+.+.|.+.+.
T Consensus 49 ~s~edL~~V~Gig~~~~e~l~~~l~ 73 (97)
T 3arc_U 49 ESVEDVLNIPGLTERQKQILRENLE 73 (97)
T ss_dssp SSGGGGGGCTTCCHHHHHHHHHTGG
T ss_pred CCHHHHHhccCCCHHHHHHHHHHhc
Confidence 5679999999999999999987654
No 31
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=89.93 E-value=0.15 Score=43.24 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.4
Q ss_pred hCCHhhhccCCCCcHHHHHHHHHHhc-CCCCC
Q 041647 77 DASMEDLARCPGIVERKVKCLYDTFH-EPFKP 107 (216)
Q Consensus 77 ~AS~EdLA~cPGig~~Kvk~L~d~fh-ePF~~ 107 (216)
.|+.++|..+||||+.||+.|.+.=. .||..
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s 159 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKKRPFES 159 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCS
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCC
Confidence 89999999999999999999977543 57754
No 32
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=89.76 E-value=0.1 Score=43.89 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=26.6
Q ss_pred cHHHHHhCCHhhhccCCCCcH-HHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVE-RKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~-~Kvk~L~d~fh 102 (216)
|++.|++||.|||+.+ ||+ .+|+.|++.|+
T Consensus 190 Sl~~i~~As~EeL~~V--IG~~~~A~~I~~~f~ 220 (220)
T 2nrt_A 190 SLENIRSASLEEIARV--IGSTEIARRVLDILG 220 (220)
T ss_dssp SHHHHHTSCHHHHHHH--HTCHHHHHHHHHHC-
T ss_pred CHHHHHhCCHHHHHHH--hChHHHHHHHHHHhC
Confidence 7888999999999999 999 99999999874
No 33
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=89.62 E-value=0.19 Score=35.59 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=38.8
Q ss_pred CCCCChHHHHHHHHHHHHhhhhhc-cchhhhhhhhhhhhccccchhcHHHHHh---CCHhhhccCCCCcHHHHHHHHHHh
Q 041647 26 GIHNDPEQLLRARVSLVLYLNTKR-RSAKSFQRQNNLLFKTQSAPVSLSHIMD---ASMEDLARCPGIVERKVKCLYDTF 101 (216)
Q Consensus 26 G~~~dpeql~~~~~~l~~~l~t~r-r~a~~~~~~nn~~~~~~s~~~SL~~Im~---AS~EdLA~cPGig~~Kvk~L~d~f 101 (216)
.+|.+++++. +.--|...| +-|....-.-+.+|... +|.+|.. .+.++|..++|||++|+++.-+.|
T Consensus 5 ~~~~~~~~~~-----l~~~L~~wR~~~A~~~~vpp~~If~D~----tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~ 75 (89)
T 1wud_A 5 KSFGGNYDRK-----LFAKLRKLRKSIADESNVPPYVVFNDA----TLIEMAEQMPITASEMLSVNGVGMRKLERFGKPF 75 (89)
T ss_dssp -----CCCHH-----HHHHHHHHHHHHHHHHTSCHHHHCCHH----HHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cccCCHHHHH-----HHHHHHHHHHHHHHHcCCCcceeeCHH----HHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 3444554443 333355555 35555555555555544 4555544 689999999999999998754443
No 34
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=88.68 E-value=0.24 Score=41.02 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=20.2
Q ss_pred ccccccCCcChhhHHHHHhhcC
Q 041647 5 HALTSVWSVNKTDVVNLGSTSG 26 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG 26 (216)
..|.+|+||+...+..+++.|+
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~yp 258 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEHYS 258 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHHCS
T ss_pred HHHHhccCCCHHHHHHHHHHCC
Confidence 4578999999999999999999
No 35
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=88.48 E-value=0.25 Score=33.36 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.9
Q ss_pred hhhccCCCCcHHHHHHHHHHhc
Q 041647 81 EDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+.|..+||||++.++.|.+.|.
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fg 25 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVK 25 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCS
T ss_pred hHHHcCCCCCHHHHHHHHHHcC
Confidence 4678999999999999999985
No 36
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=86.20 E-value=2.5 Score=34.26 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHHHhhcCC-CCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHh----CCHhhhccCCCCcHH
Q 041647 18 VVNLGSTSGI-HNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMD----ASMEDLARCPGIVER 92 (216)
Q Consensus 18 v~nLlstfG~-~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~----AS~EdLA~cPGig~~ 92 (216)
..+|...||. +-+|++|......-+-.+--.+|.|+....--..+-.. .++++.+.. ..+++|..+||||+.
T Consensus 73 ~~rL~~~~G~~fPtp~~la~~~~e~Lr~~G~~~~KA~~I~~~A~~i~~~---~~~~~~l~~~p~~~~~~~L~~lpGIG~k 149 (233)
T 2h56_A 73 YGRVEQLVGGALEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVESG---RLDFTELEGAEATTVIEKLTAIKGIGQW 149 (233)
T ss_dssp HHHHHHHHTSCCCCTHHHHTSCHHHHHHTTCCHHHHHHHHHHHHHHHTT---SSCHHHHTTSCHHHHHHHHHTSTTCCHH
T ss_pred HHHHHHHhCCCCCCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHhC---CCCHHHHhcCCHHHHHHHHHhCCCcCHH
Confidence 3467788884 34889888765433333333333333322221111111 124555532 346889999999999
Q ss_pred HHHHHHHH-hcCC
Q 041647 93 KVKCLYDT-FHEP 104 (216)
Q Consensus 93 Kvk~L~d~-fheP 104 (216)
-|.++.-. |..|
T Consensus 150 TA~~ill~alg~p 162 (233)
T 2h56_A 150 TAEMFMMFSLGRL 162 (233)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHhCCCC
Confidence 99998654 6665
No 37
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=86.07 E-value=0.66 Score=34.22 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHhhhhhc-cchhhhhhhhhhhhccccchhcHHHHHh---CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 42 VLYLNTKR-RSAKSFQRQNNLLFKTQSAPVSLSHIMD---ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 42 ~~~l~t~r-r~a~~~~~~nn~~~~~~s~~~SL~~Im~---AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.-.|...| +-|....---+.+|+.. +|.+|.. .+.++|.+++|||+.|+++. +.|-
T Consensus 18 ~~~L~~wR~~~A~~~~vP~y~If~D~----tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L 77 (103)
T 2e1f_A 18 YGKLVEARQKHANKMDVPPAILATNK----ILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLL 77 (103)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHCCHH----HHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeeECHH----HHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHH
Confidence 33444445 24544444444555543 5666654 68899999999999999984 6554
No 38
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=85.81 E-value=1.7 Score=35.53 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=50.6
Q ss_pred HHHHHhhcCC---CCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchh-cHHHHHhCC----HhhhccCCCC
Q 041647 18 VVNLGSTSGI---HNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPV-SLSHIMDAS----MEDLARCPGI 89 (216)
Q Consensus 18 v~nLlstfG~---~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~-SL~~Im~AS----~EdLA~cPGi 89 (216)
..+|...||- +-+|++|......-.-.+--.+|.|+..+.--..+-. ..+ +++.+.+.+ +++|..+|||
T Consensus 82 ~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~~Gl~~~Ka~~l~~~A~~~~~---g~~p~l~~l~~~~~~~~~~~L~~l~GI 158 (232)
T 4b21_A 82 INKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALN---KQIPSKSEIEKMSEEELMESLSKIKGV 158 (232)
T ss_dssp HHHHHHHHCSSSSCCCHHHHHTSCHHHHHTTTCCHHHHHHHHHHHHHHHT---TCSCCHHHHHHSCHHHHHHHHTTSTTC
T ss_pred HHHHHHHhCCCCCCCCHHHHHcCCHHHHHHcCCcHHHHHHHHHHHHHHHh---CCCCCHHHHHcCCHHHHHHHHHhCCCc
Confidence 4567788885 6789998876654333333333434333322222211 123 466665544 6789999999
Q ss_pred cHHHHHHHHHH-hcCC
Q 041647 90 VERKVKCLYDT-FHEP 104 (216)
Q Consensus 90 g~~Kvk~L~d~-fheP 104 (216)
|+.-|.++.-. |..|
T Consensus 159 G~~TA~~ill~alg~p 174 (232)
T 4b21_A 159 KRWTIEMYSIFTLGRL 174 (232)
T ss_dssp CHHHHHHHHHHTSCCS
T ss_pred CHHHHHHHHHHhCCCC
Confidence 99999997654 4544
No 39
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=85.58 E-value=0.48 Score=32.68 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred HhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 76 MDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 76 m~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
..+....|..+||||++.++.|.+.|.
T Consensus 14 ~~~~~~~L~~IpgIG~~~A~~Ll~~fg 40 (89)
T 1z00_A 14 VSRVTECLTTVKSVNKTDSQTLLTTFG 40 (89)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 444556789999999999999999985
No 40
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.19 E-value=1.9 Score=34.69 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=44.7
Q ss_pred ccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhc
Q 041647 5 HALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLA 84 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA 84 (216)
.-|..+.||++.++..|-+. |++ +++++..++.++|+
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~-gi~------------------------------------------t~~~~~~~~~~~L~ 39 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEA-GYI------------------------------------------DFMKIATATVGELT 39 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHH-TCC------------------------------------------SHHHHHTCCHHHHH
T ss_pred ccHhhcCCCCHHHHHHHHHc-CCC------------------------------------------cHHHHHhCCHHHHH
Confidence 45777889999988877654 522 89999999999999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 041647 85 RCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 85 ~cPGig~~Kvk~L~d~fh 102 (216)
...||.+.+|..|.+...
T Consensus 40 ~~~gis~~~a~~~i~~a~ 57 (322)
T 2i1q_A 40 DIEGISEKAAAKMIMGAR 57 (322)
T ss_dssp TSTTCCHHHHHHHHHHHH
T ss_pred HhhCcCHHHHHHHHHHHH
Confidence 999999999999987654
No 41
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=84.59 E-value=1.3 Score=35.36 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=17.4
Q ss_pred CCHhhhccCCCCcHHHHHHHHH
Q 041647 78 ASMEDLARCPGIVERKVKCLYD 99 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d 99 (216)
.|.|||.+++|||+++.+.|-+
T Consensus 86 ~svedL~~V~GIg~k~~e~l~~ 107 (134)
T 1s5l_U 86 ESVEDVLNIPGLTERQKQILRE 107 (134)
T ss_dssp SSGGGGGGCTTCCHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHH
Confidence 4679999999999986665544
No 42
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=83.66 E-value=1.1 Score=31.30 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=33.3
Q ss_pred hhhhc-cchhhhhhhhhhhhccccchhcHHHHHh---CCHhhhccCCCCcHHHHHHHHHHh
Q 041647 45 LNTKR-RSAKSFQRQNNLLFKTQSAPVSLSHIMD---ASMEDLARCPGIVERKVKCLYDTF 101 (216)
Q Consensus 45 l~t~r-r~a~~~~~~nn~~~~~~s~~~SL~~Im~---AS~EdLA~cPGig~~Kvk~L~d~f 101 (216)
|...| +-|....---+.+|+.. +|.+|.. .|.++|..++|+|+.|+++.-+.|
T Consensus 13 L~~wR~~~A~~~~vp~~~If~d~----tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~ 69 (85)
T 2kv2_A 13 LTEVCKSLGKVFGVHYFNIFNTV----TLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEV 69 (85)
T ss_dssp HHHHHHHHHHHHTSCHHHHCCHH----HHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHH
T ss_pred HHHHHHHHHHHcCCCcceeECHH----HHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 33444 24444444444455443 4555554 689999999999999998754443
No 43
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=83.51 E-value=0.42 Score=32.35 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred HhhhccCCCCcHHHHHHHHHHhc
Q 041647 80 MEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 80 ~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
...|..+||||++.++.|++.|.
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 35688999999999999999985
No 44
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=83.18 E-value=0.64 Score=33.50 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.8
Q ss_pred hhhccCCCCcHHHHHHHHHHhc
Q 041647 81 EDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.-|..+||||++.++.|...|.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~Fg 39 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVK 39 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSS
T ss_pred HHHHhCCCCCHHHHHHHHHHcC
Confidence 4678899999999999999986
No 45
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=82.88 E-value=0.93 Score=30.84 Aligned_cols=53 Identities=19% Similarity=0.363 Sum_probs=33.5
Q ss_pred hhhhc-cchhhhhhhhhhhhccccchhcHHHHHh---CCHhhhccCCCCcHHHHHHHHHHh
Q 041647 45 LNTKR-RSAKSFQRQNNLLFKTQSAPVSLSHIMD---ASMEDLARCPGIVERKVKCLYDTF 101 (216)
Q Consensus 45 l~t~r-r~a~~~~~~nn~~~~~~s~~~SL~~Im~---AS~EdLA~cPGig~~Kvk~L~d~f 101 (216)
|...| +-|....-.-+.+|+.. +|.+|.. .|.++|..++|+|++|+++.-+.|
T Consensus 11 L~~wR~~~A~~~~vpp~~I~~d~----~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~ 67 (77)
T 2rhf_A 11 LRELRRELMKETGYSAFVVFTNA----TLEALAARQPRTLAELAEVPGLGEKRIEAYGERI 67 (77)
T ss_dssp HHHHHHHHHHHHCCCHHHHCCHH----HHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcceeeCHH----HHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 34444 24444444444455443 4555554 689999999999999998854444
No 46
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=82.22 E-value=1.1 Score=31.78 Aligned_cols=33 Identities=9% Similarity=0.285 Sum_probs=31.4
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
++.++...|.+||.+++|+|++-++.|.+.+.+
T Consensus 31 Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 31 TVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp BHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998875
No 47
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=81.03 E-value=0.95 Score=31.50 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.....|..+||||++.++.|.+.|.
T Consensus 29 ~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 29 RVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 3445688999999999999999985
No 48
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=81.00 E-value=0.67 Score=39.83 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.7
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
.++.+|.++||||+++|+.||+.
T Consensus 95 ~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 95 SSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hHHHHHhCCCCCCHHHHHHHHHc
Confidence 45788999999999999999986
No 49
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=80.74 E-value=2.6 Score=37.76 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=29.9
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|+.+|++++.++|..+||+|++-++.+...+.
T Consensus 669 s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 669 SIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp SHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred CHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 89999999999999999999999999987775
No 50
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=80.18 E-value=3.1 Score=33.78 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=46.5
Q ss_pred HHHhhc-C--CCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchh-cHHHHHhCC----HhhhccCCCCcH
Q 041647 20 NLGSTS-G--IHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPV-SLSHIMDAS----MEDLARCPGIVE 91 (216)
Q Consensus 20 nLlstf-G--~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~-SL~~Im~AS----~EdLA~cPGig~ 91 (216)
+| ..| | .+-+|++|......-.-.+--.+|.|+....--..+- +..+ +++.+.+.+ .++|..+||||+
T Consensus 74 rL-~~~Gg~~~fPtp~~la~~~~e~Lr~~G~~~rKa~~i~~~A~~~~---~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~ 149 (228)
T 3s6i_A 74 RF-KSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATI---SGLIPTKEEAERLSNEELIERLTQIKGIGR 149 (228)
T ss_dssp HH-HTSSGGGSCCCHHHHHHSCHHHHHHHTCCHHHHHHHHHHHHHHH---HTSSCCHHHHTTSCHHHHHHHHTTSTTCCH
T ss_pred HH-HHhcCCCCCCCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHH---cCCCCChHHHhcCCHHHHHHHHHhCCCcCH
Confidence 45 556 4 3678999887765443333334443333322211111 1112 355554444 688999999999
Q ss_pred HHHHHHHH-HhcCC
Q 041647 92 RKVKCLYD-TFHEP 104 (216)
Q Consensus 92 ~Kvk~L~d-~fheP 104 (216)
.-|.++.- .|+.|
T Consensus 150 ~TA~~ill~~lg~p 163 (228)
T 3s6i_A 150 WTVEMLLIFSLNRD 163 (228)
T ss_dssp HHHHHHHHHTSCCS
T ss_pred HHHHHHHHHhCCCC
Confidence 99999764 35554
No 51
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=80.14 E-value=1.2 Score=28.91 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.2
Q ss_pred hhhccCCCCcHHHHHHHHHHhcC
Q 041647 81 EDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
..|..+||||+..++.|.+.|..
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~fgs 36 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHFGS 36 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCS
T ss_pred HHHcCCCCCCHHHHHHHHHHcCC
Confidence 46889999999999999999853
No 52
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=77.66 E-value=3.3 Score=30.54 Aligned_cols=34 Identities=9% Similarity=0.232 Sum_probs=32.5
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcCC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEP 104 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fheP 104 (216)
++.++...|.+||.+++|+|++-++.|.+.+.+-
T Consensus 34 Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 34 YIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp BHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred cHHHHHhCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 9999999999999999999999999999999865
No 53
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=76.69 E-value=4.6 Score=30.35 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=40.5
Q ss_pred hhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcCC
Q 041647 46 NTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFHEP 104 (216)
Q Consensus 46 ~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fheP 104 (216)
.-+-|+.....+.|-. ++.++...|.+||.+++|+|.+-++.|.+.+.+-
T Consensus 30 ~LSvRs~NcLkragI~---------Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 30 ELTVRSANCLKAEAIH---------YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp TCCTTTHHHHHTTTCC---------BHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCC---------cHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3344555555555544 9999999999999999999999999999999865
No 54
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=76.24 E-value=2.7 Score=35.28 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=29.5
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|++++..++.++|++..||.+.+|+++.+...
T Consensus 58 t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 58 TLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp SHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999887765
No 55
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=75.96 E-value=1.3 Score=36.93 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=22.5
Q ss_pred ccccccCCcChhhHHHHHhhcCCCCChHHHHHH
Q 041647 5 HALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRA 37 (216)
Q Consensus 5 ~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~ 37 (216)
..|..|+||+...+..+...|+ .|..|.++
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~yp---Tp~~L~~A 262 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDRYS---TPASLLAA 262 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSSSC---SHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHcC---CHHHHHHH
Confidence 4578899999999999998888 45554443
No 56
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=75.73 E-value=2.9 Score=33.78 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCC----HhhhccCCCCcHHH
Q 041647 18 VVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDAS----MEDLARCPGIVERK 93 (216)
Q Consensus 18 v~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS----~EdLA~cPGig~~K 93 (216)
..+|...||. -+|+++......-.-.+--.++.|+....--..+-. ..++++.+.+.+ .++|..+||||+.-
T Consensus 83 ~~rL~~~~G~-ptp~~la~~~~e~Lr~~G~~~~KA~~i~~lA~~~~~---g~~~l~~l~~~~~~e~~~~L~~l~GIG~~T 158 (225)
T 2yg9_A 83 YGRLEGLPGG-VVPAALLKVSGDDLRGVGLSWAKVRTVQAAAAAAVS---GQIDFAHLSGQPDELVIAELVQLPGIGRWT 158 (225)
T ss_dssp HHHHHTSTTC-SCHHHHTTSCHHHHHHTTCCHHHHHHHHHHHHHHHT---TSSCGGGCTTSCHHHHHHHHHTSTTCCHHH
T ss_pred HHHHHHHhCc-CCHHHHHcCCHHHHHHCCCcHHHHHHHHHHHHHHHh---CCcCHHHHhcCCHHHHHHHHHcCCCCCHHH
Confidence 3456666773 567777665433222222222222222221111111 112444433332 67899999999999
Q ss_pred HHHHHHH-hcCC
Q 041647 94 VKCLYDT-FHEP 104 (216)
Q Consensus 94 vk~L~d~-fheP 104 (216)
|.++.-. |+.|
T Consensus 159 A~~ill~~lg~~ 170 (225)
T 2yg9_A 159 AEMFLLFALARP 170 (225)
T ss_dssp HHHHHHHTSCCS
T ss_pred HHHHHHHhCCCC
Confidence 9997654 4444
No 57
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=74.40 E-value=0.74 Score=34.61 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=37.4
Q ss_pred HHHhhhhhc-cchhhhhhhhhhhhccccchhcHHHHHh---CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 41 LVLYLNTKR-RSAKSFQRQNNLLFKTQSAPVSLSHIMD---ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 41 l~~~l~t~r-r~a~~~~~~nn~~~~~~s~~~SL~~Im~---AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|.-.|...| +-|....---+.+|+.. +|.+|.. .+.++|.+++|||+.|+++. +.|-
T Consensus 24 l~~~L~~wR~~~A~~~~vP~y~If~D~----tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L 84 (113)
T 2dgz_A 24 LYGKLVEARQKHANKMDVPPAILATNK----ILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLW 84 (113)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHCCHH----HHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeECHH----HHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHH
Confidence 344455555 35555544445555544 5666654 68899999999999999876 6554
No 58
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=74.25 E-value=1.6 Score=37.88 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.1
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
..+.+|.++||||+++|+.||+.
T Consensus 99 ~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 99 QTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHc
Confidence 34578899999999999999986
No 59
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=73.26 E-value=2 Score=31.14 Aligned_cols=33 Identities=9% Similarity=0.285 Sum_probs=31.1
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
++.++...|.+||.++.|+|++-++.|.+.+.+
T Consensus 38 Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 38 TVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp BHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 999999999999999999999999999988865
No 60
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=72.95 E-value=5.8 Score=33.00 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=44.6
Q ss_pred HHHHHhhcCC-----------CCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHh----CCHhh
Q 041647 18 VVNLGSTSGI-----------HNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMD----ASMED 82 (216)
Q Consensus 18 v~nLlstfG~-----------~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~----AS~Ed 82 (216)
..+|...||- +-+|++|......-.-.+.-.+|.|+....--.. . +++.+.. ..+++
T Consensus 140 ~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~Lr~~G~~~rKa~~i~~~A~~-----g---~l~~l~~~~~~e~~~~ 211 (295)
T 2jhn_A 140 AAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGLRECGLSRRKAELIVEIAKE-----E---NLEELKEWGEEEAYEY 211 (295)
T ss_dssp HHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTC-----S---SGGGGGGSCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHC-----C---CHhhhhcCCHHHHHHH
Confidence 4567778885 6799999886543333333333333322211111 0 2222222 23688
Q ss_pred hccCCCCcHHHHHHHHHH-hc
Q 041647 83 LARCPGIVERKVKCLYDT-FH 102 (216)
Q Consensus 83 LA~cPGig~~Kvk~L~d~-fh 102 (216)
|..+||||+.-|.++.-. |+
T Consensus 212 L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 212 LTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHTSTTCCHHHHHHHHHHTTC
T ss_pred HhcCCCcCHHHHHHHHHHccC
Confidence 999999999999998764 44
No 61
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=72.86 E-value=8.4 Score=33.47 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=47.2
Q ss_pred HHHHHhhcC------------CCCChHHHHHHHHH-HHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHh----CCH
Q 041647 18 VVNLGSTSG------------IHNDPEQLLRARVS-LVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMD----ASM 80 (216)
Q Consensus 18 v~nLlstfG------------~~~dpeql~~~~~~-l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~----AS~ 80 (216)
..+|...|| .+-+|++|...... ..-.+.-.+| |+....--..+-......++|+.+.. ..+
T Consensus 174 ~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee~Lr~~Gl~~R-A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~ 252 (360)
T 2xhi_A 174 VERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAH 252 (360)
T ss_dssp HHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHHHHHTTCTTH-HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHH
T ss_pred HHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHHHHHHcCCcHH-HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHH
Confidence 456777777 36789988776431 2222222222 33322222111111111234555433 346
Q ss_pred hhhccCCCCcHHHHHHHHHH-hcCC
Q 041647 81 EDLARCPGIVERKVKCLYDT-FHEP 104 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~-fheP 104 (216)
++|..+||||+.-|.++.-. |..|
T Consensus 253 ~~L~~LpGIGp~TA~~ill~alg~p 277 (360)
T 2xhi_A 253 KALCILPGVGTCVADKICLMALDKP 277 (360)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHSCCT
T ss_pred HHHHhCCCCCHHHHHHHHHHhCCCC
Confidence 88999999999999998654 6666
No 62
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=72.20 E-value=1.9 Score=37.85 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=19.9
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
..+.+|.+|||||+++|+.||+.
T Consensus 118 ~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 118 KSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHT
T ss_pred hHHHHHHccCCCCHHHHHHHHHc
Confidence 34568889999999999999986
No 63
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=72.05 E-value=17 Score=30.31 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=25.3
Q ss_pred cHHHHHhC----CHhhhccCCCCcHHHHHHHHHH-hcCC
Q 041647 71 SLSHIMDA----SMEDLARCPGIVERKVKCLYDT-FHEP 104 (216)
Q Consensus 71 SL~~Im~A----S~EdLA~cPGig~~Kvk~L~d~-fheP 104 (216)
+++.+... .+++|..+||||+.-|.++.-. |+.|
T Consensus 197 ~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 197 NLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKY 235 (290)
T ss_dssp CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCT
T ss_pred CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCC
Confidence 55555433 4678999999999999998654 6655
No 64
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=69.07 E-value=2.5 Score=36.34 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=17.2
Q ss_pred hhhccCCCCcHHHHHHHHHH
Q 041647 81 EDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~ 100 (216)
+-|.+|||||+++++.||+.
T Consensus 96 ~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 96 ELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHT
T ss_pred HHHhcCCCcCHHHHHHHHHc
Confidence 44579999999999999975
No 65
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=68.24 E-value=8 Score=33.68 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=29.1
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|+++|..++.++|+++-||.+.||..+.+...
T Consensus 106 tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 106 TAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp BHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999999999999988876644
No 66
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=67.31 E-value=3.3 Score=30.28 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHhhhhhcc-chhhhhhhhhhhhccccchhcHHHHHh---CCHhhhccCCCCcHHHHHHHHHHh
Q 041647 42 VLYLNTKRR-SAKSFQRQNNLLFKTQSAPVSLSHIMD---ASMEDLARCPGIVERKVKCLYDTF 101 (216)
Q Consensus 42 ~~~l~t~rr-~a~~~~~~nn~~~~~~s~~~SL~~Im~---AS~EdLA~cPGig~~Kvk~L~d~f 101 (216)
.--|...|. -|..-..--+.+|+.. +|.+|.. .|.++|.+++|||+.|+++.-+.|
T Consensus 25 ~~~L~~wR~~~A~~~~vP~~~If~D~----tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~ 84 (101)
T 2rrd_A 25 LGELTEVCKSLGKVFGVHYFNIFNTV----TLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEV 84 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHCCHH----HHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeeECHH----HHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 334444452 4444333344455443 4666554 689999999999999998654443
No 67
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=67.00 E-value=3.7 Score=39.80 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=26.9
Q ss_pred hCCHhhhccCCCCcHHHHHHHHHHh--cCCCCCC
Q 041647 77 DASMEDLARCPGIVERKVKCLYDTF--HEPFKPV 108 (216)
Q Consensus 77 ~AS~EdLA~cPGig~~Kvk~L~d~f--hePF~~~ 108 (216)
.||.++|..+||||++||+.|.+.- |.||...
T Consensus 504 tAs~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr 537 (785)
T 3bzc_A 504 TASAALLARISGLNSTLAQNIVAHRDANGAFRTR 537 (785)
T ss_dssp TCCHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSG
T ss_pred cCCHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCH
Confidence 3899999999999999999987764 4677654
No 68
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=66.34 E-value=1.9 Score=41.03 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=12.4
Q ss_pred ccCCcChhhHHHHHhhcCC
Q 041647 9 SVWSVNKTDVVNLGSTSGI 27 (216)
Q Consensus 9 sV~sVNKTDv~nLlstfG~ 27 (216)
.|.|+++.-+..|....++
T Consensus 445 dI~GLG~k~i~~L~~~g~I 463 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLV 463 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSC
T ss_pred CcCcCCHHHHHHHHHcCCC
Confidence 4666776666666666654
No 69
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=66.31 E-value=8.7 Score=31.38 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred hcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 70 VSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 70 ~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.+.+.|.+++.|+|.. -|++.+|++.|.+.-.
T Consensus 96 Ptpe~la~~~~e~Lr~-~Gl~~~Ka~~l~~~A~ 127 (232)
T 4b21_A 96 PTPKQIMETDVETLHE-CGFSKLKSQEIHIVAE 127 (232)
T ss_dssp CCHHHHHTSCHHHHHT-TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHcCCHHHHHH-cCCcHHHHHHHHHHHH
Confidence 4899999999999976 4999999999887543
No 70
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=66.27 E-value=2.5 Score=42.22 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.9
Q ss_pred CHhhhccCCCCcHHHHHHHHHHh---cCCCCCC
Q 041647 79 SMEDLARCPGIVERKVKCLYDTF---HEPFKPV 108 (216)
Q Consensus 79 S~EdLA~cPGig~~Kvk~L~d~f---hePF~~~ 108 (216)
+...|..++|||++||+.|.+.. |.||...
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr 747 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLLAR 747 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCT
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 78899999999999999998877 6788553
No 71
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=64.89 E-value=10 Score=31.67 Aligned_cols=30 Identities=7% Similarity=-0.080 Sum_probs=23.4
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
++.+|.+++.+.|.+. +|..-...||+..+
T Consensus 201 Ti~dL~~~~~~~L~~~--fG~~~g~~l~~~a~ 230 (356)
T 4dez_A 201 TVADLAVTDPSVLTTA--FGPSTGLWLLLLAK 230 (356)
T ss_dssp SHHHHHTSCHHHHHHH--HCHHHHHHHHHHHT
T ss_pred eecccccCCHHHHHHH--hCChHHHHHHHHHc
Confidence 7888888888888877 56666677888765
No 72
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=64.07 E-value=1.4 Score=36.90 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
++..+|..+||||+++++.|++.
T Consensus 12 a~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 12 EEYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp -----------------------
T ss_pred cchhHHhcCCCCCHHHHHHHHHc
Confidence 45568999999999999999997
No 73
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=61.26 E-value=3.2 Score=38.92 Aligned_cols=32 Identities=3% Similarity=0.134 Sum_probs=29.5
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
++.+|...+.+||..++|+|++.+++|++.+.
T Consensus 470 ~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe 501 (586)
T 4glx_A 470 TPADLFKLTAGKLTGLERMGPKSAQNVVNALE 501 (586)
T ss_dssp SGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHhCCCHHHHhcccCccHHHHHHHHHHHH
Confidence 66778888999999999999999999999986
No 74
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=59.84 E-value=4.9 Score=32.44 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.8
Q ss_pred hhccCCCCcHHHHHHHHHHhcC
Q 041647 82 DLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 82 dLA~cPGig~~Kvk~L~d~fhe 103 (216)
.|..+||||++.++.|.+.|..
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHhcCCCcCHHHHHHHHHhCCh
Confidence 6778999999999999999873
No 75
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=59.39 E-value=3.9 Score=41.55 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.9
Q ss_pred CHhhhccCCCCcHHHHHHHHHHh---cCCCCCC
Q 041647 79 SMEDLARCPGIVERKVKCLYDTF---HEPFKPV 108 (216)
Q Consensus 79 S~EdLA~cPGig~~Kvk~L~d~f---hePF~~~ 108 (216)
+...|..++|||++||+.|.+.. +.||...
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr 744 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLLAR 744 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 68899999999999999998877 6788653
No 76
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=58.54 E-value=6.2 Score=34.50 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=37.4
Q ss_pred ccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccC
Q 041647 7 LTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARC 86 (216)
Q Consensus 7 LTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~c 86 (216)
++.+|||++.-...|+..+||+ ++.+|...+.+.|.+.
T Consensus 255 v~~l~GiG~~~~~~lL~~lGI~------------------------------------------TigdLa~~~~~~L~~~ 292 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILGIE------------------------------------------YMGELTQFTESQLQSH 292 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHTCC------------------------------------------BGGGGGGSCHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHcCCC------------------------------------------cHHHHhhCCHHHHHHH
Confidence 5678888876666777888843 5566667777777776
Q ss_pred CCCcHHHHHHHHHHhc
Q 041647 87 PGIVERKVKCLYDTFH 102 (216)
Q Consensus 87 PGig~~Kvk~L~d~fh 102 (216)
+|++-...||+..+
T Consensus 293 --fG~~~g~~L~~~a~ 306 (435)
T 4ecq_A 293 --FGEKNGSWLYAMCR 306 (435)
T ss_dssp --HCHHHHHHHHHHTT
T ss_pred --hCccHHHHHHHHhh
Confidence 55667788888766
No 77
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=58.39 E-value=4.7 Score=34.13 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.3
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHH
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYD 99 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d 99 (216)
.+++++ +.|+++||||++-|++|--
T Consensus 20 ~l~~LI----~~l~~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 20 SVAKLI----EELSKLPGIGPKTAQRLAF 44 (212)
T ss_dssp HHHHHH----HHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHH----HHHHHCCCCCHHHHHHHHH
Confidence 355555 7899999999999999843
No 78
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=57.48 E-value=23 Score=28.17 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=21.4
Q ss_pred CCHhhhccCCCCcHHHHHHHHH-HhcCC
Q 041647 78 ASMEDLARCPGIVERKVKCLYD-TFHEP 104 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d-~fheP 104 (216)
..+++|..+||||+.-|.++.- .|+.|
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~~~~ 139 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAFGKK 139 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhcCCC
Confidence 5688999999999999998764 34444
No 79
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=57.37 E-value=8.2 Score=36.82 Aligned_cols=32 Identities=3% Similarity=0.134 Sum_probs=22.0
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
++.+|..+..++|...+|+|++++++|++.+.
T Consensus 470 ~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe 501 (671)
T 2owo_A 470 TPADLFKLTAGKLTGLERMGPKSAQNVVNALE 501 (671)
T ss_dssp SGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhhCHHHhhcccccchhHHHHHHHHHH
Confidence 55556666667777777777777777776654
No 80
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=54.95 E-value=5.7 Score=32.22 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=19.6
Q ss_pred hhccCCCCcHHHHHHHHHHhcC
Q 041647 82 DLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 82 dLA~cPGig~~Kvk~L~d~fhe 103 (216)
.|..+||||++.++.|.+.|..
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHhcCCCcCHHHHHHHHhhCCh
Confidence 5778999999999999999863
No 81
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=54.41 E-value=6 Score=33.92 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=19.2
Q ss_pred HHHHHhCCHhhhccCCCCcHHHHHHHH
Q 041647 72 LSHIMDASMEDLARCPGIVERKVKCLY 98 (216)
Q Consensus 72 L~~Im~AS~EdLA~cPGig~~Kvk~L~ 98 (216)
+++++ +.|+++||||++-|++|-
T Consensus 7 l~~LI----~~l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 7 LVSLI----RELSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHHHH----HHHHTSTTCCHHHHHHHH
T ss_pred HHHHH----HHHhHCCCCCHHHHHHHH
Confidence 45554 789999999999999984
No 82
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=54.33 E-value=7.9 Score=33.24 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+++++|..+||||+..++.|.+.+.
T Consensus 54 ~~~~~l~~lpGIG~~~A~kI~E~l~ 78 (335)
T 2bcq_A 54 TSYQEACSIPGIGKRMAEKIIEILE 78 (335)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cCHHHHhcCCCccHHHHHHHHHHHH
Confidence 4567899999999999999988876
No 83
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=53.90 E-value=6.9 Score=35.48 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.6
Q ss_pred CHhhhccCCCCcHHHHHHHHHH
Q 041647 79 SMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 79 S~EdLA~cPGig~~Kvk~L~d~ 100 (216)
...+|..+||||+++|+.||+.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCcCHHHHHHHHHc
Confidence 4578899999999999999985
No 84
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=53.37 E-value=21 Score=29.33 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.0
Q ss_pred HhhhccCCCCcHHHHHHHHH-HhcCC
Q 041647 80 MEDLARCPGIVERKVKCLYD-TFHEP 104 (216)
Q Consensus 80 ~EdLA~cPGig~~Kvk~L~d-~fheP 104 (216)
+++|..+||||+.-|.++.- .|+.|
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~~lg~~ 231 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred HHHHhcCCCcCHHHHHHHHHHhCCCC
Confidence 68999999999999999765 46666
No 85
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=53.22 E-value=12 Score=29.64 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
..+++|..+||||+.-|.++.-.
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHH
Confidence 56789999999999999998765
No 86
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=52.96 E-value=7.4 Score=30.41 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred hhhccCCCCcHHHHHHHHHHhcC
Q 041647 81 EDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
.-|..+||||+..++.|.+.|..
T Consensus 162 ~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 162 YILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC
Confidence 34789999999999999999875
No 87
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=52.92 E-value=2.9 Score=34.15 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=0.0
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+++++..++..+|++.-||.+.+++.+.+...
T Consensus 35 t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~ 66 (324)
T 2z43_A 35 SLETLAVASPQDLSVAAGIPLSTAQKIIKEAR 66 (324)
T ss_dssp --------------------------------
T ss_pred cHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999887654
No 88
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=49.67 E-value=17 Score=27.38 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=23.9
Q ss_pred cHHHHHhCCHh--hhccCCCCcHHHHHHHHH
Q 041647 71 SLSHIMDASME--DLARCPGIVERKVKCLYD 99 (216)
Q Consensus 71 SL~~Im~AS~E--dLA~cPGig~~Kvk~L~d 99 (216)
-+++.+...|. ++..+||||+.-+++|-+
T Consensus 6 Kh~~Fv~EPmgeK~V~evpGIG~~~~~~L~~ 36 (89)
T 1ci4_A 6 KHRDFVAEPMGEKPVGSLAGIGEVLGKKLEE 36 (89)
T ss_dssp HHHHHHTSCCTTCCGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcccCCCcCHHHHHHHHH
Confidence 45666777765 799999999999999977
No 89
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=48.05 E-value=11 Score=32.17 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.5
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+++++|..+||||+..++.|.+.+.
T Consensus 54 ~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 54 KSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4667899999999999999988765
No 90
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=47.40 E-value=14 Score=27.56 Aligned_cols=51 Identities=25% Similarity=0.327 Sum_probs=37.1
Q ss_pred HHHHhhhhhc--cchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCCCcHHHHHHHHHH
Q 041647 40 SLVLYLNTKR--RSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 40 ~l~~~l~t~r--r~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
|++.+|..-- +....|++||=. ++-+|-+.++|||+..+ |++.-.-+|+.-
T Consensus 8 Sv~s~Lt~LGc~~~Id~F~~qgl~---------~i~qL~~~~ledL~~mk-Ipe~~R~kIWk~ 60 (80)
T 1dxs_A 8 SLVSFLTGLGCPNCIEYFTSQGLQ---------SIYHLQNLTIEDLGALK-IPEQYRMTIWRG 60 (80)
T ss_dssp CHHHHHHHTTCTTSHHHHHTTTCC---------CHHHHHTCCHHHHHHTT-CCTTTHHHHHHH
T ss_pred cHHHHHHhcCchHHHHHHHHcCcc---------cchhhccCCHHHHHhCC-CCHHHHHHHHhh
Confidence 4455544433 567788888866 99999999999999986 888766455443
No 91
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=46.42 E-value=27 Score=29.24 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=17.7
Q ss_pred hhhccCCCCcHHHHHHHHHHhc
Q 041647 81 EDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+-+-.+||||+++|..|...|.
T Consensus 235 D~ipGv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 235 DYNEGVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp TTBCCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCCCCcCHHHHHHHHHHcC
Confidence 4566899999999988877664
No 92
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=46.37 E-value=13 Score=32.24 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.++++|..+||||+..++.|.+.+.
T Consensus 58 ~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 58 ASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp CSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4667899999999999999988765
No 93
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=45.35 E-value=28 Score=29.80 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCCCcHHHHHH
Q 041647 17 DVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKC 96 (216)
Q Consensus 17 Dv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPGig~~Kvk~ 96 (216)
|...++..||+ +|+||..-.+ ++-.+.-| .+||||++.|-.
T Consensus 207 ~~~~v~~~~gl--~~~q~id~~~-----------------------------------L~G~D~~~--gipGiG~KtA~k 247 (341)
T 3q8k_A 207 HLSRILQELGL--NQEQFVDLCI-----------------------------------LLGSDYCE--SIRGIGPKRAVD 247 (341)
T ss_dssp EHHHHHHHHTC--CHHHHHHHHH-----------------------------------HHCCSSSC--CCTTCCHHHHHH
T ss_pred cHHHHHHHhCC--CHHHHHHHHH-----------------------------------hcCCCCCC--CCCCccHHHHHH
Q ss_pred HHHHhc
Q 041647 97 LYDTFH 102 (216)
Q Consensus 97 L~d~fh 102 (216)
|...|.
T Consensus 248 ll~~~g 253 (341)
T 3q8k_A 248 LIQKHK 253 (341)
T ss_dssp HHHHHC
T ss_pred HHHHcC
No 94
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=43.80 E-value=18 Score=28.51 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=23.3
Q ss_pred cHHHHHhCCHhhhcc---CCCCcHHHHHHHHHHh
Q 041647 71 SLSHIMDASMEDLAR---CPGIVERKVKCLYDTF 101 (216)
Q Consensus 71 SL~~Im~AS~EdLA~---cPGig~~Kvk~L~d~f 101 (216)
+.+.|.+++.|+|.. --|+..+|++.|.+.-
T Consensus 60 t~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a 93 (211)
T 2abk_A 60 TPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTC 93 (211)
T ss_dssp SHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred CHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 788888888888754 2466678888887654
No 95
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=43.35 E-value=30 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.9
Q ss_pred hcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 70 VSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 70 ~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.+.+.|.+++.|+| +--|++.+|++.|.+.-.
T Consensus 93 ptp~~la~~~~e~L-r~~G~~~~KA~~i~~lA~ 124 (225)
T 2yg9_A 93 VVPAALLKVSGDDL-RGVGLSWAKVRTVQAAAA 124 (225)
T ss_dssp SCHHHHTTSCHHHH-HHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHcCCHHHH-HHCCCcHHHHHHHHHHHH
Confidence 48999999999999 456899999999887643
No 96
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=43.11 E-value=25 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=20.3
Q ss_pred hCCHhhhccCCCCcHHHHHHHHHHh
Q 041647 77 DASMEDLARCPGIVERKVKCLYDTF 101 (216)
Q Consensus 77 ~AS~EdLA~cPGig~~Kvk~L~d~f 101 (216)
....-+|.++||||...|+.||+.-
T Consensus 653 ~~e~~~L~qlp~i~~~rar~L~~~g 677 (715)
T 2va8_A 653 KEELLELVQISGVGRKRARLLYNNG 677 (715)
T ss_dssp CGGGHHHHTSTTCCHHHHHHHHHTT
T ss_pred ChhhcchhhCCCCCHHHHHHHHHcC
Confidence 3455678899999999999999654
No 97
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=42.71 E-value=13 Score=31.10 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred hhhccCCCCcHHHHHHHHHHhc
Q 041647 81 EDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fh 102 (216)
..|..+||||+..++.|.+.|.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg 189 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG 189 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC
T ss_pred ccccCCCCcCHHHHHHHHHHcC
Confidence 3578999999999999999986
No 98
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=42.24 E-value=14 Score=30.46 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=20.1
Q ss_pred hhhccCCCCcHHHHHHHHHHhcC
Q 041647 81 EDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
..|..++|||++.|..|.+.|..
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSCH
T ss_pred HHhcCcCCcCHHHHHHHHHhCCH
Confidence 45778999999999999999874
No 99
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=41.30 E-value=14 Score=33.34 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=19.7
Q ss_pred HhhhccCCCCcHHHHHHHHHHh
Q 041647 80 MEDLARCPGIVERKVKCLYDTF 101 (216)
Q Consensus 80 ~EdLA~cPGig~~Kvk~L~d~f 101 (216)
...|..++|||+++|..||+.+
T Consensus 92 ~~~l~~v~GvGpk~A~~~~~~l 113 (575)
T 3b0x_A 92 VLEVMEVPGVGPKTARLLYEGL 113 (575)
T ss_dssp HHHHHTSTTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcCHHHHHHHHHhc
Confidence 4678999999999999999974
No 100
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=40.41 E-value=39 Score=26.92 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=29.7
Q ss_pred hccccchhcHHHHHhCCHhhhc---cCCCCcHHHHHHHHHHhc
Q 041647 63 FKTQSAPVSLSHIMDASMEDLA---RCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 63 ~~~~s~~~SL~~Im~AS~EdLA---~cPGig~~Kvk~L~d~fh 102 (216)
|.|....++.+.|.+++.|+|. +.-|+..+|++.|.+...
T Consensus 60 ~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~ 102 (218)
T 1pu6_A 60 ILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 102 (218)
T ss_dssp SSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 3333334569999999999995 446899999999876553
No 101
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=39.25 E-value=46 Score=25.96 Aligned_cols=27 Identities=7% Similarity=-0.113 Sum_probs=22.0
Q ss_pred HHHhCCHhhhccCCCCcHHHHHHHHHH
Q 041647 74 HIMDASMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 74 ~Im~AS~EdLA~cPGig~~Kvk~L~d~ 100 (216)
.++..+.|+|..+||||+--|.++--.
T Consensus 97 ~~vp~~~~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 97 EYLTKQWKYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp HHHHSCCSSGGGSTTCCHHHHHHHHHH
T ss_pred CcCCCChhhhhcCCCchHHHHHHHHHH
Confidence 456778999999999999988876543
No 102
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=38.98 E-value=28 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=18.6
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH-hcCC
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT-FHEP 104 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~-fheP 104 (216)
..+++|..+||||+.-|.++.-. |..|
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a~g~~ 137 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVP 137 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCc
Confidence 46777888888888877776543 4444
No 103
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=38.84 E-value=24 Score=27.62 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHhhhhhcc-chhhhhhhhhhhhccccchhcHHHHHhCCHhhhccC-CCCc--HHHHHHHHHHhc
Q 041647 28 HNDPEQLLRARVSLVLYLNTKRR-SAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARC-PGIV--ERKVKCLYDTFH 102 (216)
Q Consensus 28 ~~dpeql~~~~~~l~~~l~t~rr-~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~c-PGig--~~Kvk~L~d~fh 102 (216)
+.||=+++-+. ++--+|+.. -.+-| +.||+.-. +.+.|.+|+.|+|..+ -|+| .+||++|.+...
T Consensus 28 ~~dP~~vLVs~---ILsqQT~~~~v~~~~----~~l~~~~p---t~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~ 96 (161)
T 4e9f_A 28 FHDPWKLLIAT---IFLNRTSGKMAIPVL----WKFLEKYP---SAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSD 96 (161)
T ss_dssp TTSHHHHHHHH---HHTTTSCHHHHHHHH----HHHHHHSC---SHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred cCChHHHHHHH---HHHhhCcHHHHHHHH----HHHHHHCC---CHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhC
Confidence 46787765333 344444432 23333 33455443 8999999999998653 5555 789999998875
No 104
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=38.77 E-value=28 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.3
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+.+.|.+++.|+| +--|++.+|++.|.+.-.
T Consensus 86 tp~~la~~~~e~L-r~~G~~~~KA~~I~~~A~ 116 (233)
T 2h56_A 86 KPEQLYRVSDEAL-RQAGVSKRKIEYIRHVCE 116 (233)
T ss_dssp CTHHHHTSCHHHH-HHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHcCCHHHH-HHcCCCHHHHHHHHHHHH
Confidence 7899999999999 456999999999877553
No 105
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=38.55 E-value=42 Score=30.98 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=20.3
Q ss_pred cHHHHH-hCCHhhhccCCCCcHHHHHHH
Q 041647 71 SLSHIM-DASMEDLARCPGIVERKVKCL 97 (216)
Q Consensus 71 SL~~Im-~AS~EdLA~cPGig~~Kvk~L 97 (216)
-.+++. ....|.||.+.|+|++-.+.|
T Consensus 436 rvkqlarefeieklasvegvgervlrsl 463 (519)
T 2csb_A 436 RVKQLAREFEIEKLASVEGVGERVLRSL 463 (519)
T ss_dssp HHHHHHHTTCHHHHHTSTTCSHHHHHHH
T ss_pred HHHHHHHHHhHHHHhhccchHHHHHHHh
Confidence 444443 457789999999999988776
No 106
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=38.33 E-value=67 Score=29.23 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=23.2
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
++.+|...+.+.|.+. +|..-...||+..+
T Consensus 338 TigDLa~~~~~~L~~~--fG~~~g~~L~~~a~ 367 (504)
T 3gqc_A 338 TCGDLQYMTMAKLQKE--FGPKTGQMLYRFCR 367 (504)
T ss_dssp BHHHHTTSCHHHHHHH--HCHHHHHHHHHHTT
T ss_pred cHHHHHhccHHHHHHh--hChhHHHHHHHHhc
Confidence 7888888888888877 56656788887654
No 107
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=37.99 E-value=27 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=22.5
Q ss_pred hCCHhhhccCCCCcHHHHHHHHH-HhcCC
Q 041647 77 DASMEDLARCPGIVERKVKCLYD-TFHEP 104 (216)
Q Consensus 77 ~AS~EdLA~cPGig~~Kvk~L~d-~fheP 104 (216)
...+++|..+||||+.-|.++.- .|..|
T Consensus 117 ~~~~~~L~~lpGIG~kTA~~il~~a~~~~ 145 (218)
T 1pu6_A 117 EVTREWLLDQKGIGKESADAILCYACAKE 145 (218)
T ss_dssp HCCHHHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHcCCCcCHHHHHHHHHHHCCCC
Confidence 46789999999999999999875 34443
No 108
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=37.51 E-value=46 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.9
Q ss_pred hc-cCCCCcHHHHHHHHHHhc
Q 041647 83 LA-RCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 83 LA-~cPGig~~Kvk~L~d~fh 102 (216)
+- .+||||+++|-.|...|.
T Consensus 252 ~p~GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 252 NPDGFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp BTTCSTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHHHHcC
Confidence 45 899999999999999886
No 109
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=37.00 E-value=43 Score=26.61 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=25.7
Q ss_pred cHHHHHhCCHhhhcc---CCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLAR---CPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~---cPGig~~Kvk~L~d~fh 102 (216)
+.+.|.+++.|+|.. --|+..+|++.|.+.-.
T Consensus 66 tp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~ 100 (221)
T 1kea_A 66 CFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELAR 100 (221)
T ss_dssp SHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 889999999999953 34888899999877643
No 110
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=36.87 E-value=24 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.3
Q ss_pred hcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 70 VSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 70 ~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+-+.-||--+-+.+-.|||||++.|..|...|.
T Consensus 192 iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 192 ISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp HHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHC
T ss_pred HHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcC
Confidence 455666776778899999999999999998875
No 111
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=36.67 E-value=18 Score=35.13 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhcC
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
.|.+||..++|||+.+.+.+...+.-
T Consensus 535 ~sr~~L~~V~giG~k~~ekl~~FL~i 560 (785)
T 3bzc_A 535 RTRDELKKVSRLGEKTFEQAAGFLRV 560 (785)
T ss_dssp SSGGGGGGSTTCCHHHHHHHGGGEEC
T ss_pred CCHHHHHhcCCCCHHHHHHhhheEEE
Confidence 46789999999999999998877763
No 112
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=36.63 E-value=32 Score=27.30 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=31.5
Q ss_pred cccccccccCCcChhhHHHHHhhcCCCC-------ChHHHHHHHH
Q 041647 2 ALTHALTSVWSVNKTDVVNLGSTSGIHN-------DPEQLLRARV 39 (216)
Q Consensus 2 ~lt~aLTsV~sVNKTDv~nLlstfG~~~-------dpeql~~~~~ 39 (216)
++.-|||.|.||+.+-+..++...|+.. .++|+.+=+.
T Consensus 27 ~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~ 71 (146)
T 3u5c_S 27 KIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQ 71 (146)
T ss_dssp CTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHH
T ss_pred chHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHH
Confidence 4567999999999999999999999854 5777766554
No 113
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=36.62 E-value=41 Score=28.44 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=18.3
Q ss_pred hhhc-cCCCCcHHHHHHHHHHhc
Q 041647 81 EDLA-RCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 81 EdLA-~cPGig~~Kvk~L~d~fh 102 (216)
+-+- .+||||+++|-.|...|.
T Consensus 233 D~~p~Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 233 DYNPDGIRGIGPERALKIIKKYG 255 (346)
T ss_dssp SSSTTCSTTCCHHHHHHHHHHSS
T ss_pred CCCCCCCCCcCHHHHHHHHHHcC
Confidence 4455 799999999999998875
No 114
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=36.59 E-value=32 Score=27.57 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=25.6
Q ss_pred cHHHHHhCCHhhhcc---CCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLAR---CPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~---cPGig~~Kvk~L~d~fh 102 (216)
+.+.|.+++.|+|.. --|+..+|++.|.+.-.
T Consensus 64 t~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~ 98 (226)
T 1orn_A 64 TPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCA 98 (226)
T ss_dssp SHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 899999999999754 35788899999887543
No 115
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=36.58 E-value=29 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH-hcCC
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT-FHEP 104 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~-fheP 104 (216)
..+++|..+||||+.-|.++.-. |+.|
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~~~~~ 133 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTAFGWP 133 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHCCCC
Confidence 57889999999999999987654 5655
No 116
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=36.15 E-value=24 Score=25.34 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=33.4
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcCCCCC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFHEPFKP 107 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhePF~~ 107 (216)
+..++..++.++|++.=|++-+.+..+.+.+-.-|.+
T Consensus 27 Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~ 63 (83)
T 2kz3_A 27 TVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSA 63 (83)
T ss_dssp CHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999998888766655
No 117
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=35.68 E-value=37 Score=27.39 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.9
Q ss_pred hcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 70 VSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 70 ~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.+.+.|.+++.|+|. --|++.+|++.|.+.-.
T Consensus 85 Ptp~~la~~~~e~Lr-~~G~~~rKa~~i~~~A~ 116 (228)
T 3s6i_A 85 PTPEEIRDMDFEIMR-ACGFSARKIDSLKSIAE 116 (228)
T ss_dssp CCHHHHHHSCHHHHH-HHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHcCCHHHHH-HcCCCHHHHHHHHHHHH
Confidence 489999999999995 45999999999987543
No 118
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=35.40 E-value=45 Score=29.07 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=23.0
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
++.+|...+.+.|.+. +|..-.+.||+..+
T Consensus 257 TigdLa~~~~~~L~~~--fG~~~g~~L~~~a~ 286 (420)
T 3osn_A 257 SVRDLQTFSPKILEKE--LGISVAQRIQKLSF 286 (420)
T ss_dssp SHHHHHHSCHHHHHHH--HHHHHHHHHHHHHT
T ss_pred cHHHHhhCCHHHHHHH--hCchHHHHHHHHhc
Confidence 7888888888888876 55556788888764
No 119
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=35.27 E-value=27 Score=25.08 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.3
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.|..|+..++|||++-++.|-+.+.
T Consensus 55 ~s~~e~~~L~giG~ki~~~L~e~L~ 79 (87)
T 2kp7_A 55 RSGKEAKILQHFGDRLCRMLDEKLK 79 (87)
T ss_dssp CSHHHHHTCTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHhhcccHHHHHHHHHHHH
Confidence 4788999999999999999877653
No 120
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=35.10 E-value=8 Score=32.03 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|++++..++..+|+...||.+.++..+.+...
T Consensus 50 t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 50 TIKGIQMTTRRALCNVKGLSEAKVDKIKEAAN 81 (343)
T ss_dssp --------------------------------
T ss_pred cHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 88889999999999999999999988877654
No 121
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=34.79 E-value=18 Score=34.94 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.4
Q ss_pred hhhccCCCCcHHHHHHHHHHhc
Q 041647 81 EDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 81 EdLA~cPGig~~Kvk~L~d~fh 102 (216)
--|..+||||+.+|++|.+.|-
T Consensus 468 amLtAIaGIGp~tAeRLLEkFG 489 (685)
T 4gfj_A 468 ASLISIRGIDRERAERLLKKYG 489 (685)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred eeeeccCCCCHHHHHHHHHHhc
Confidence 4578899999999999999986
No 122
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=34.71 E-value=54 Score=28.19 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCCCcHHHHHH
Q 041647 17 DVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKC 96 (216)
Q Consensus 17 Dv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPGig~~Kvk~ 96 (216)
|...++..+|+ +|+||..-.+ ++-.+--| .+||||+++|-.
T Consensus 207 ~~~~v~~~~gl--~~~q~id~~~-----------------------------------L~G~D~~d--~IpGIG~KtA~k 247 (379)
T 1ul1_X 207 HLSRILQELGL--NQEQFVDLCI-----------------------------------LLGSDYCE--SIRGIGPKRAVD 247 (379)
T ss_dssp EHHHHHHHHTC--CHHHHHHHHH-----------------------------------HHHCSSSC--CCTTCCHHHHHH
T ss_pred eHHHHHHHhCC--CHHHHHHHHH-----------------------------------HhCCCcCC--CCCCcCHHHHHH
Q ss_pred HHHHhc
Q 041647 97 LYDTFH 102 (216)
Q Consensus 97 L~d~fh 102 (216)
|...|.
T Consensus 248 Ll~~~g 253 (379)
T 1ul1_X 248 LIQKHK 253 (379)
T ss_dssp HHHHSS
T ss_pred HHHHcC
No 123
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=34.42 E-value=25 Score=30.82 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 78 ASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.++++|..+||||+..++.|.+.+.
T Consensus 77 ~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 77 TSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp CSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred cCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 4667899999999999999887765
No 124
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=34.29 E-value=34 Score=27.16 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=21.4
Q ss_pred CCHhhhccCCCCcHHHHHHHHH-HhcCC
Q 041647 78 ASMEDLARCPGIVERKVKCLYD-TFHEP 104 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d-~fheP 104 (216)
..+++|..+||||+.-|.++.- .|+.|
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~ 133 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH 133 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC
Confidence 4688999999999999988765 46655
No 125
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=33.80 E-value=8.7 Score=32.19 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=0.0
Q ss_pred HhhhccCCCCcHHHHHHHHHHhcC
Q 041647 80 MEDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 80 ~EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
...|..+||||+..++.|.+.|..
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~FGS 195 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYFGS 195 (226)
T ss_dssp ------------------------
T ss_pred cccccccCCCCHHHHHHHHHHhCC
Confidence 356889999999999999999864
No 126
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=33.79 E-value=28 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.7
Q ss_pred hcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 70 VSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 70 ~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
.+.+.|..++.|+|..| |+|- |++.|.+.-.
T Consensus 159 Ptpe~la~~~~e~L~~~-g~g~-Ra~~I~~~A~ 189 (290)
T 3i0w_A 159 PTVDKLHEFTEKDFEEC-TAGF-RAKYLKDTVD 189 (290)
T ss_dssp CCHHHHTTCCHHHHHHT-TCGG-GHHHHHHHHH
T ss_pred CcHHHHHCCCHHHHHHc-CCch-HHHHHHHHHH
Confidence 48899999999999996 8985 8998886543
No 127
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=33.68 E-value=24 Score=31.45 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHHhhhhhc-cchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 28 HNDPEQLLRARVSLVLYLNTKR-RSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 28 ~~dpeql~~~~~~l~~~l~t~r-r~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
-.+++|+..-++ |...| +-|......-+.+|..+. -+.+...+-.+.++|..|+|+|++|+++--+.|.
T Consensus 323 ~l~~~~l~l~~~-----L~~wR~~~Ar~~d~p~~~V~~d~~-L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l 392 (428)
T 3saf_A 323 HLNTQQLTAFQL-----LFAWRDKTARREDESYGYVLPNHM-MLKIAEELPKEPQGIIACCNPVPPLVRQQINEMH 392 (428)
T ss_dssp CCCHHHHHHHHH-----HHHHHHHHHHHHTCCHHHHCCHHH-HHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHH
T ss_pred CCChHHHHHHHH-----HHHHHHHHHHHcCCCcCEEECHHH-HHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 446777643333 55555 355554444555554332 2345555567899999999999999887555443
No 128
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=33.51 E-value=27 Score=28.46 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=39.5
Q ss_pred CCHhhhc-cCCCCcHHHHHHHHHHhcC-CCCCCCC-------CCCCCCCCCCCCCCCCC-CcchhhHHHHHHHHHHHhcC
Q 041647 78 ASMEDLA-RCPGIVERKVKCLYDTFHE-PFKPVVS-------RHPPIPETPSLKDVEPS-SVNESALSAAFANYADKMGE 147 (216)
Q Consensus 78 AS~EdLA-~cPGig~~Kvk~L~d~fhe-PF~~~~s-------r~~~~p~t~~~k~~eps-sv~esalsaAfa~~a~~~~~ 147 (216)
..+++|. .+||||+.-|.++.-.|.. |..++-. |.--+++.| .+. ..+-..+...|-.++++.|.
T Consensus 126 ~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~VDthv~Ri~~rlg~~~~~~-----k~~t~k~y~~ie~~~~~~a~~~g~ 200 (219)
T 3n0u_A 126 QSREFLVRNAKGIGWKEASHFLRNTGVEDLAILDKHVLRLMKRHGLIQEIP-----KGWSKKRYLYVEEILRKVAEAFGE 200 (219)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCCCCHHHHHHHHHTTSCSSCC-----SSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCCeeeecHHHHHHHHHcCCCCcCc-----CcCCHHHHHHHHHHHHHHHHHHCC
Confidence 3567899 9999999999998765554 5443311 222222211 111 12335677788888888775
Q ss_pred C
Q 041647 148 K 148 (216)
Q Consensus 148 ~ 148 (216)
+
T Consensus 201 ~ 201 (219)
T 3n0u_A 201 S 201 (219)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=33.20 E-value=53 Score=29.82 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=17.5
Q ss_pred cccccCCcChhhHHHHHhhcCC
Q 041647 6 ALTSVWSVNKTDVVNLGSTSGI 27 (216)
Q Consensus 6 aLTsV~sVNKTDv~nLlstfG~ 27 (216)
-++.+|||++.-...|-..||+
T Consensus 308 PV~~l~GIG~~t~~~L~~llGI 329 (520)
T 3mfi_A 308 EITSFWTLGGVLGKELIDVLDL 329 (520)
T ss_dssp CGGGSTTCSSHHHHHHHHHTTC
T ss_pred cHHHhcCCCHHHHHHHHHhcCC
Confidence 4678999998888888777784
No 130
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=32.99 E-value=51 Score=27.64 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=15.4
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 041647 85 RCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 85 ~cPGig~~Kvk~L~d~fh 102 (216)
.+||||+++|-.|...|.
T Consensus 241 gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp CSTTCCHHHHHHHHHTCS
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 688999999999888774
No 131
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=32.39 E-value=22 Score=27.16 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=30.4
Q ss_pred cccccccccCCcChhhHHHHHhhcCCCC-------ChHHHHHHHH
Q 041647 2 ALTHALTSVWSVNKTDVVNLGSTSGIHN-------DPEQLLRARV 39 (216)
Q Consensus 2 ~lt~aLTsV~sVNKTDv~nLlstfG~~~-------dpeql~~~~~ 39 (216)
++.-+||.|.||+.+-+..++...|+.. .++|+.+=..
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~ 57 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRD 57 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHH
Confidence 3556899999999999999999999864 5666665444
No 132
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=32.32 E-value=62 Score=26.72 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=29.7
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|+.++++++.+++..+-|+++...+.++...+
T Consensus 180 s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 180 TVYDIMALEDEERDEILTLTDSQLAQVAAFVN 211 (328)
T ss_dssp SHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHH
Confidence 89999999999999988999999999988887
No 133
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=32.21 E-value=26 Score=25.56 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=17.5
Q ss_pred hCCCCCCcccceeEEEEeccccc
Q 041647 191 LCPPHLDDVGGVLAITISMDSLK 213 (216)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~ 213 (216)
-|-.+..||-|++-|++|++.+.
T Consensus 108 ~CH~~~g~VLG~l~v~~sl~~~~ 130 (135)
T 3b42_A 108 SCHDAGAAYLGGLLVTTSIEEGY 130 (135)
T ss_dssp GTSCTTCSEEEEEEEEEECC---
T ss_pred hhcCCCCeeEEEEEEEEehHHHH
Confidence 46666889999999999998763
No 134
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=32.17 E-value=27 Score=28.00 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=31.0
Q ss_pred ccccccccCCcChhhHHHHHhhcCCCC-------ChHHHHHHHH
Q 041647 3 LTHALTSVWSVNKTDVVNLGSTSGIHN-------DPEQLLRARV 39 (216)
Q Consensus 3 lt~aLTsV~sVNKTDv~nLlstfG~~~-------dpeql~~~~~ 39 (216)
+.-|||.|.||+.+-+..++...|+.. .++|+.+=+.
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~ 71 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITD 71 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHH
T ss_pred EEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHH
Confidence 456899999999999999999999964 5777776555
No 135
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=31.92 E-value=26 Score=28.60 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=36.8
Q ss_pred CCHhhhc-cCCCCcHHHHHHHHHHhcCCCCCCCC--------CCCCCCCCCCCCCCCCCC-cchhhHHHHHHHHHHHhcC
Q 041647 78 ASMEDLA-RCPGIVERKVKCLYDTFHEPFKPVVS--------RHPPIPETPSLKDVEPSS-VNESALSAAFANYADKMGE 147 (216)
Q Consensus 78 AS~EdLA-~cPGig~~Kvk~L~d~fhePF~~~~s--------r~~~~p~t~~~k~~epss-v~esalsaAfa~~a~~~~~ 147 (216)
..+++|- .+||||+.-|.++.-....|-.+++- |-.-++++| ...+ .+-..+...|-.|+++++.
T Consensus 121 ~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDthv~Ri~~RlG~~~~~~-----k~lt~~~y~e~~~~l~~~g~~~g~ 195 (214)
T 3fhf_A 121 VAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRELYENNYIDEIP-----KTLSRRKYLEIENILRDIGEEVNL 195 (214)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTSSSSCC-----SSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCCcccCcHHHHHHHHHcCCCCCCC-----CcCCHHHHHHHHHHHHHHHHHHCC
Confidence 4568899 99999999999976543323233222 222222222 1111 2224566677777777764
Q ss_pred C
Q 041647 148 K 148 (216)
Q Consensus 148 ~ 148 (216)
+
T Consensus 196 ~ 196 (214)
T 3fhf_A 196 K 196 (214)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=31.75 E-value=29 Score=29.34 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=16.0
Q ss_pred cccccccCCcChhhHHHHHhh
Q 041647 4 THALTSVWSVNKTDVVNLGST 24 (216)
Q Consensus 4 t~aLTsV~sVNKTDv~nLlst 24 (216)
.+.|..++||++.-+..++..
T Consensus 131 ~~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 131 MHQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp SBGGGGSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 356788889888888877753
No 137
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=31.67 E-value=38 Score=28.54 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.1
Q ss_pred CCHhhhccCCCCcHHHHHHHHHH-hcCCC
Q 041647 78 ASMEDLARCPGIVERKVKCLYDT-FHEPF 105 (216)
Q Consensus 78 AS~EdLA~cPGig~~Kvk~L~d~-fhePF 105 (216)
..+++|..+||||+.-|.++.-. |..|.
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~~ 143 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVPE 143 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCCC
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCCc
Confidence 47899999999999988886553 66664
No 138
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=28.90 E-value=19 Score=27.96 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.7
Q ss_pred ccccccccCCcChhhHHHHHhhcCCCC-------ChHHHHHHHH
Q 041647 3 LTHALTSVWSVNKTDVVNLGSTSGIHN-------DPEQLLRARV 39 (216)
Q Consensus 3 lt~aLTsV~sVNKTDv~nLlstfG~~~-------dpeql~~~~~ 39 (216)
+.-+||.|.||+.+-+..++..+|+.. .++|+.+=+.
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~ 58 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLRE 58 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHH
T ss_pred eeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHH
Confidence 456899999999999999999999865 4566655443
No 139
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=28.73 E-value=70 Score=26.62 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=10.0
Q ss_pred cCCCCcHHHHHHHHH
Q 041647 85 RCPGIVERKVKCLYD 99 (216)
Q Consensus 85 ~cPGig~~Kvk~L~d 99 (216)
.+||||+++|-.|..
T Consensus 229 GvpGiG~ktA~kli~ 243 (326)
T 1a76_A 229 GVKGIGFKRAYELVR 243 (326)
T ss_dssp TTTTCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 677777777765554
No 140
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=28.69 E-value=26 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.0
Q ss_pred CHhhhccCCCCcHHHHHHHHHH
Q 041647 79 SMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 79 S~EdLA~cPGig~~Kvk~L~d~ 100 (216)
||.+|..+|+||+.-++.|...
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v 23 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA 23 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT
T ss_pred ChHHhhcCCCCCHHHHHHHHHc
Confidence 6889999999999998888653
No 141
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=27.21 E-value=1.1e+02 Score=24.31 Aligned_cols=31 Identities=10% Similarity=0.293 Sum_probs=24.9
Q ss_pred cHHHHHhCCHhhhcc---CCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLAR---CPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~---cPGig~~Kvk~L~d~fh 102 (216)
+.+.|.+++.|+|.. --|+. +|++.|.+.-.
T Consensus 61 t~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~ 94 (225)
T 1kg2_A 61 TVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQ 94 (225)
T ss_dssp SHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHH
T ss_pred CHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHH
Confidence 789999999999984 45777 69999877543
No 142
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=27.13 E-value=29 Score=28.91 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=38.7
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc-CCCCCCCCCCCCCCCCCCCCC-CCCCCcchhhHHHHHHHHHHHhcCC
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH-EPFKPVVSRHPPIPETPSLKD-VEPSSVNESALSAAFANYADKMGEK 148 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh-ePF~~~~sr~~~~p~t~~~k~-~epssv~esalsaAfa~~a~~~~~~ 148 (216)
++.+|.+.+.+.|.+. +|......+|+..+ ..-.++.... +..-+... -...-.+...+..+...++++..++
T Consensus 202 t~~dL~~~~~~~L~~~--fG~~~g~~l~~~a~G~d~~~v~~~~---~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~r 276 (354)
T 3bq0_A 202 KLRDILSKNYNELEKI--TGKAKALYLLKLAQNKYSEPVENKS---KIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNK 276 (354)
T ss_dssp BGGGGGGSCHHHHHHH--HCHHHHHHHHHHHTTCCCCCCCSEE---CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHhcCCHHHHHHH--HCHHHHHHHHHHhCCCCCCCCcCCC---CceeEEeEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666677777777766 56665788888877 2222221111 11000000 0111124567777777777777654
Q ss_pred C
Q 041647 149 K 149 (216)
Q Consensus 149 ~ 149 (216)
-
T Consensus 277 L 277 (354)
T 3bq0_A 277 V 277 (354)
T ss_dssp T
T ss_pred H
Confidence 3
No 143
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=26.23 E-value=28 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.4
Q ss_pred CHhhhccCCCCcHHHHHHHHHH
Q 041647 79 SMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 79 S~EdLA~cPGig~~Kvk~L~d~ 100 (216)
||.+|..+|+||+.-.+.|...
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~ 23 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA 23 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT
T ss_pred CHHHHhhCCCCCHHHHHHHHHc
Confidence 7889999999999998888653
No 144
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=25.70 E-value=34 Score=28.66 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=18.4
Q ss_pred cccccCCcChhhHHHHHhhcC
Q 041647 6 ALTSVWSVNKTDVVNLGSTSG 26 (216)
Q Consensus 6 aLTsV~sVNKTDv~nLlstfG 26 (216)
-+..|+||+...+..|+..||
T Consensus 236 ~ipGv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 236 YNEGVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp TBCCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHcC
Confidence 456799999999999999999
No 145
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.43 E-value=40 Score=26.91 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=30.7
Q ss_pred cccccccccCCcChhhHHHHHhhcCCCC-------ChHHHHHHHH
Q 041647 2 ALTHALTSVWSVNKTDVVNLGSTSGIHN-------DPEQLLRARV 39 (216)
Q Consensus 2 ~lt~aLTsV~sVNKTDv~nLlstfG~~~-------dpeql~~~~~ 39 (216)
++.-|||.|.||+.+-+..++...|+.. .++|+.+=+.
T Consensus 25 ~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~ 69 (152)
T 3iz6_M 25 KIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMA 69 (152)
T ss_dssp BHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHH
T ss_pred EeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHH
Confidence 3456899999999999999999999854 5667765554
No 146
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=25.00 E-value=31 Score=30.88 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred hhccCCCCcHHHHHHHHHHhcCC
Q 041647 82 DLARCPGIVERKVKCLYDTFHEP 104 (216)
Q Consensus 82 dLA~cPGig~~Kvk~L~d~fheP 104 (216)
-|.++||+|.++.++|++.|-.|
T Consensus 27 ~L~~~~gvG~~~~~~Ll~~fgs~ 49 (382)
T 3maj_A 27 RLIRAENVGPRTFRSLINHFGSA 49 (382)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSH
T ss_pred HHHcCCCCCHHHHHHHHHHcCCH
Confidence 36899999999999999999644
No 147
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=24.94 E-value=43 Score=23.26 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=24.7
Q ss_pred cchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCCCcH
Q 041647 50 RSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVE 91 (216)
Q Consensus 50 r~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPGig~ 91 (216)
|-+..|.+++=- |+.+|...+.|||+++ ||..
T Consensus 18 ~Y~d~F~~~g~~---------s~~~v~~lt~eDL~~~-GIt~ 49 (69)
T 2y9u_A 18 SCLDYFTTQGLT---------TIYQIEHYSMDDLASL-KIPE 49 (69)
T ss_dssp GGHHHHHTTTCC---------BHHHHTTCCHHHHHHT-TCCH
T ss_pred HHHHHHHHcCCC---------cHHHHHHcCHHHHHhc-CCCh
Confidence 456667766654 9999999999999997 4443
No 148
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=24.48 E-value=28 Score=30.88 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=18.8
Q ss_pred cHHHHHhCCHhhhccC--CCCcHHHHHHH
Q 041647 71 SLSHIMDASMEDLARC--PGIVERKVKCL 97 (216)
Q Consensus 71 SL~~Im~AS~EdLA~c--PGig~~Kvk~L 97 (216)
|+.+|+ ++.++|..+ |++|++-++.+
T Consensus 680 s~~~l~-~~~~~l~~~l~~~~~~~i~~~~ 707 (715)
T 2va8_A 680 ELGDVV-MNPDKVKNLLGQKLGEKVVQEA 707 (715)
T ss_dssp SHHHHH-HCHHHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHh-CCHHHHHHHhChhHHHHHHHHH
Confidence 899999 999999998 44444444433
No 149
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.35 E-value=36 Score=27.11 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=32.3
Q ss_pred cccccccccCCcChhhHHHHHhhcCCCC-------ChHHHHHHHHHH
Q 041647 2 ALTHALTSVWSVNKTDVVNLGSTSGIHN-------DPEQLLRARVSL 41 (216)
Q Consensus 2 ~lt~aLTsV~sVNKTDv~nLlstfG~~~-------dpeql~~~~~~l 41 (216)
++.-|||.|.||+.+-+..++...|+.. .++|+.+=+..+
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i 66 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEIL 66 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHH
T ss_pred EehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHH
Confidence 3556899999999999999999999964 677777665533
No 150
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=24.33 E-value=69 Score=26.87 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=32.1
Q ss_pred hhhhc-cchhhhhhhhhhhhccccchhcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 45 LNTKR-RSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 45 l~t~r-r~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
|..-| +-|..-...-+.+|+... -+.+...+-.+.++|.++ |+|++|+++--+.|.
T Consensus 220 L~~wR~~~A~~~d~p~~~V~~d~~-L~~iA~~~P~~~~~l~~i-g~~~~~~~~~g~~~l 276 (375)
T 1yt3_A 220 LADWRLRKARERDLAVNFVVREEH-LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLL 276 (375)
T ss_dssp HHHHHHHHHHHHTCCGGGTSCHHH-HHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcceEECHHH-HHHHHHHCCCCHHHHHhc-CCChHHHHHHHHHHH
Confidence 33434 344444444444444332 123333344689999999 999999887544444
No 151
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=23.78 E-value=43 Score=28.08 Aligned_cols=18 Identities=6% Similarity=0.101 Sum_probs=14.7
Q ss_pred ccCCcChhhHHHHHhhcC
Q 041647 9 SVWSVNKTDVVNLGSTSG 26 (216)
Q Consensus 9 sV~sVNKTDv~nLlstfG 26 (216)
+|+||+...+..|+..||
T Consensus 241 gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp CSTTCCHHHHHHHHHTCS
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 678888888888888888
No 152
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=23.77 E-value=49 Score=27.41 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.6
Q ss_pred hcHHHHHhCCHhhhccCCCCcHHHHHHHHHHhcC
Q 041647 70 VSLSHIMDASMEDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 70 ~SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
.+.+.|.+++.|+|.. -|++.+|++.|.+.-..
T Consensus 162 Ptp~~la~~~~~~Lr~-~G~~~rKa~~i~~~A~~ 194 (295)
T 2jhn_A 162 PTQEAILKAGVEGLRE-CGLSRRKAELIVEIAKE 194 (295)
T ss_dssp CCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHTC
T ss_pred CCHHHHHcCCHHHHHH-cCCCHHHHHHHHHHHHC
Confidence 4889999999999955 58999999999998876
No 153
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=22.82 E-value=49 Score=33.14 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=37.7
Q ss_pred cccccccCCcChhhHHHHHhhcCCCCChHHHHHHHHHHHHhhhhhccchhhhhhhhhhhhccccchhcHHHHHhCCHhhh
Q 041647 4 THALTSVWSVNKTDVVNLGSTSGIHNDPEQLLRARVSLVLYLNTKRRSAKSFQRQNNLLFKTQSAPVSLSHIMDASMEDL 83 (216)
Q Consensus 4 t~aLTsV~sVNKTDv~nLlstfG~~~dpeql~~~~~~l~~~l~t~rr~a~~~~~~nn~~~~~~s~~~SL~~Im~AS~EdL 83 (216)
.+.|..|.|+|++-+.+++.... ++|--| .|.+||
T Consensus 716 ~~lL~~v~GlGp~kA~~Iv~~r~-------------------------------~~~G~f--------------~sr~~L 750 (1030)
T 3psf_A 716 ASALKYISGFGKRKAIDFLQSLQ-------------------------------RLNEPL--------------LARQQL 750 (1030)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHHH-------------------------------HTCSCC--------------CCTTHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHHH-------------------------------HhCCCC--------------CCHHHH
Confidence 45678888888888888876431 122222 456788
Q ss_pred ccCCCCcHHHHHHHHHHhcC
Q 041647 84 ARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 84 A~cPGig~~Kvk~L~d~fhe 103 (216)
..++|||++...+.-..+.-
T Consensus 751 ~~v~~iG~k~fe~~agflrI 770 (1030)
T 3psf_A 751 ITHNILHKTIFMNSAGFLYI 770 (1030)
T ss_dssp HHTTSSCHHHHHHHTTTEEC
T ss_pred HhcCCccHHHHHhccCeEEE
Confidence 99999999888777655443
No 154
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=22.71 E-value=91 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=18.6
Q ss_pred CHhhhccCCCCcHHHHHHHHHH
Q 041647 79 SMEDLARCPGIVERKVKCLYDT 100 (216)
Q Consensus 79 S~EdLA~cPGig~~Kvk~L~d~ 100 (216)
..-+|..+||||...|+.||+.
T Consensus 644 e~~~L~qlp~v~~~rar~L~~~ 665 (720)
T 2zj8_A 644 ELIPLMQLPLVGRRRARALYNS 665 (720)
T ss_dssp GGGGGTTSTTCCHHHHHHHHTT
T ss_pred cchhhhhCCCCCHHHHHHHHHc
Confidence 4457899999999999999954
No 155
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=22.18 E-value=31 Score=28.65 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=21.0
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
++.+|.+.+.+.|.+. +|......+|+..+
T Consensus 201 t~~dL~~~~~~~L~~~--fG~~~g~~l~~~a~ 230 (352)
T 1jx4_A 201 KLVDTLSIEFDKLKGM--IGEAKAKYLISLAR 230 (352)
T ss_dssp BGGGGGSSCHHHHHHH--HCHHHHHHHHHHHT
T ss_pred hHHHHHCCCHHHHHHh--cChhHHHHHHHHhC
Confidence 5666667777777766 56655778888776
No 156
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=21.07 E-value=1.1e+02 Score=25.03 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=25.6
Q ss_pred cHHHHHhCCHhhhccCCCCcHHHHHHHHHHhc
Q 041647 71 SLSHIMDASMEDLARCPGIVERKVKCLYDTFH 102 (216)
Q Consensus 71 SL~~Im~AS~EdLA~cPGig~~Kvk~L~d~fh 102 (216)
+.+.|.+++.|+|. --|+..+|++.|.+.-.
T Consensus 157 tp~~la~~~~~~Lr-~~G~~~~ra~~i~~~A~ 187 (282)
T 1mpg_A 157 TPQRLAAADPQALK-ALGMPLKRAEALIHLAN 187 (282)
T ss_dssp CHHHHHTCCHHHHH-HTTSCHHHHHHHHHHHH
T ss_pred CHHHHHcCCHHHHH-HcCCCHHHHHHHHHHHH
Confidence 88999999999994 45888899999887654
No 157
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=20.75 E-value=42 Score=27.58 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=21.0
Q ss_pred HhhhccCCCCcHHHHHHHHHHhcC
Q 041647 80 MEDLARCPGIVERKVKCLYDTFHE 103 (216)
Q Consensus 80 ~EdLA~cPGig~~Kvk~L~d~fhe 103 (216)
..-|..+||+++.||..|.+.|-.
T Consensus 236 ~~mL~~IpGVs~~~A~~I~~~ypT 259 (311)
T 2ziu_A 236 ARQLMQISGVSGDKAAAVLEHYST 259 (311)
T ss_dssp HHHHTTBTTCCHHHHHHHHHHCSS
T ss_pred HHHHHhccCCCHHHHHHHHHHCCC
Confidence 467889999999999999999853
No 158
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.50 E-value=34 Score=27.48 Aligned_cols=26 Identities=4% Similarity=0.073 Sum_probs=23.8
Q ss_pred cccccccccCCcChhhHHHHHhhcCC
Q 041647 2 ALTHALTSVWSVNKTDVVNLGSTSGI 27 (216)
Q Consensus 2 ~lt~aLTsV~sVNKTDv~nLlstfG~ 27 (216)
++.-+||.|.||+++-+..++..+|+
T Consensus 59 ~v~~aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 59 RVEYSLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp BTTTGGGGSTTCCSSTTTGGGTTTTC
T ss_pred EEEEeeeeecCccHHHHHHHHHHcCC
Confidence 45679999999999999999999997
No 159
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=20.03 E-value=76 Score=27.01 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=0.0
Q ss_pred CHhhhcc-CCCCcHHHHHHHHHH-hcCCCCCC
Q 041647 79 SMEDLAR-CPGIVERKVKCLYDT-FHEPFKPV 108 (216)
Q Consensus 79 S~EdLA~-cPGig~~Kvk~L~d~-fhePF~~~ 108 (216)
++++|.. +||||+.-|.++.-. |+.|..++
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~V 157 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQATGVV 157 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCCCccc
Done!