BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041651
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 179/450 (39%), Gaps = 53/450 (11%)
Query: 113 MVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYAT 172
+ + D +C S+ NG +V +GG ND + + D WI P + R Y +
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGG-ND----AKKTSLYDSSSDSWIPGPD-MQVARGYQS 274
Query: 173 NQILPDX-----XXXXXXXXXQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP 226
+ + D + N E Y P S S P + L + LY
Sbjct: 275 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GLY- 329
Query: 227 FVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGS 286
D + ++F + +F + + Y D ++ S+ + D +G+
Sbjct: 330 ----RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMSGN 385
Query: 287 T----SVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVM 342
+V+ +I+ GG+ + + AT I + G + N + + R
Sbjct: 386 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTF 441
Query: 343 GDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYH 402
++LP+G I G + G +E + P+ P IY P + T F P++ R+YH
Sbjct: 442 HTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPEQDT---FYKQNPNSIVRVYH 496
Query: 403 SSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL--SAEYATVRPKILSLN 460
S ++LL DGRV GG + ++P YL S RPKI +
Sbjct: 497 SISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI-TRT 549
Query: 461 ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVY 520
T K ++ S + +S LI TH+ +QR + L L + SY +
Sbjct: 550 STQSVKVGGRITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL-TLTNNGGNSYSF 604
Query: 521 HLAAVAPSTAEIAPPGYYLLFVVH-AEIPS 549
+ PS + +A PGY++LFV++ A +PS
Sbjct: 605 QV----PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 178/450 (39%), Gaps = 53/450 (11%)
Query: 113 MVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYAT 172
+ + D +C S+ NG +V +GG ND + + D WI P + R Y +
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGG-ND----AKKTSLYDSSSDSWIPGPD-MQVARGYQS 274
Query: 173 NQILPDX-----XXXXXXXXXQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP 226
+ + D + N E Y P S S P + L + LY
Sbjct: 275 SATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GLY- 329
Query: 227 FVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGS 286
D + ++F + +F + + Y D ++ S+ + D G+
Sbjct: 330 ----RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 385
Query: 287 T----SVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVM 342
+V+ +I+ GG+ + + AT I + G + N + + R
Sbjct: 386 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTF 441
Query: 343 GDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYH 402
++LP+G I G + G +E + P+ P IY P + T F P++ R+YH
Sbjct: 442 HTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPEQDT---FYKQNPNSIVRVYH 496
Query: 403 SSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL--SAEYATVRPKILSLN 460
S ++LL DGRV GG + ++P YL S RPKI +
Sbjct: 497 SISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI-TRT 549
Query: 461 ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVY 520
T K ++ S + +S LI TH+ +QR + L L + SY +
Sbjct: 550 STQSVKVGGRITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL-TLTNNGGNSYSF 604
Query: 521 HLAAVAPSTAEIAPPGYYLLFVVH-AEIPS 549
+ PS + +A PGY++LFV++ A +PS
Sbjct: 605 QV----PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 178/450 (39%), Gaps = 53/450 (11%)
Query: 113 MVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYAT 172
+ + D +C S+ NG +V +GG ND + + D WI P + R Y +
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGG-ND----AKKTSLYDSSSDSWIPGPD-MQVARGYQS 274
Query: 173 NQILPDX-----XXXXXXXXXQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP 226
+ + D + N E Y P S S P + L + LY
Sbjct: 275 SATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GLY- 329
Query: 227 FVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGS 286
D + ++F + +F + + Y D ++ S+ + D G+
Sbjct: 330 ----RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 385
Query: 287 T----SVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVM 342
+V+ +I+ GG+ + + AT I + G + N + + R
Sbjct: 386 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTF 441
Query: 343 GDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYH 402
++LP+G I G + G +E + P+ P IY P + T F P++ R+YH
Sbjct: 442 HTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPEQDT---FYKQNPNSIVRVYH 496
Query: 403 SSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL--SAEYATVRPKILSLN 460
S ++LL DGRV GG + ++P YL S RPKI +
Sbjct: 497 SISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI-TRT 549
Query: 461 ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVY 520
T K ++ S + +S LI TH+ +QR + L L + SY +
Sbjct: 550 STQSVKVGGRITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL-TLTNNGGNSYSF 604
Query: 521 HLAAVAPSTAEIAPPGYYLLFVVH-AEIPS 549
+ PS + +A PGY++LFV++ A +PS
Sbjct: 605 QV----PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 178/450 (39%), Gaps = 53/450 (11%)
Query: 113 MVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYAT 172
+ + D +C S+ NG +V +GG ND + + D WI P + R Y +
Sbjct: 243 VTKHDMFCPGISMDGNGQIVVTGG-ND----AKKTSLYDSSSDSWIPGPD-MQVARGYQS 296
Query: 173 NQILPDX-----XXXXXXXXXQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP 226
+ + D + N E Y P S S P + L + LY
Sbjct: 297 SATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK----QGLYK 352
Query: 227 FVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGS 286
D + ++F + +F + + Y D ++ S+ + D G+
Sbjct: 353 -----SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 407
Query: 287 T----SVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVM 342
+V+ +I+ GG+ + + + AT I + G + N + + R
Sbjct: 408 AVMYDAVKGKILTFGGSPDYTDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTF 463
Query: 343 GDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYH 402
++LP+G I G + G +E + P+ P IY P + T F P++ R YH
Sbjct: 464 HTSVVLPDGSTFITGGQRRGII-FEDST-PVFTPEIYVPEQDT---FYKQNPNSIVRAYH 518
Query: 403 SSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL--SAEYATVRPKILSLN 460
S ++LL DGRV GG + ++P YL S RPKI +
Sbjct: 519 SISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYDSNGNLATRPKI-TRT 571
Query: 461 ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVY 520
T K ++ S + +S LI TH+ +QR + L L + SY +
Sbjct: 572 STQSVKVGGRITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL-TLTNNGGNSYSF 626
Query: 521 HLAAVAPSTAEIAPPGYYLLFVVH-AEIPS 549
+ PS + +A PGY++LFV++ A +PS
Sbjct: 627 QV----PSDSGVALPGYWMLFVMNSAGVPS 652
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 178/450 (39%), Gaps = 53/450 (11%)
Query: 113 MVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYAT 172
+ + D +C S+ NG +V +GG ND + + D WI P + R Y +
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGG-ND----AKKTSLYDSSSDSWIPGPD-MQVARGYQS 274
Query: 173 NQILPDX-----XXXXXXXXXQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP 226
+ + D + N E Y P S S P + L + LY
Sbjct: 275 SATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GLY- 329
Query: 227 FVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGS 286
D + ++F + +F + + Y D ++ S+ + D G+
Sbjct: 330 ----RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 385
Query: 287 T----SVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVM 342
+V+ +I+ GG+ + + AT I + G + N + + R
Sbjct: 386 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTF 441
Query: 343 GDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYH 402
++LP+G I G + G +E + P+ P IY P + T F P++ R+YH
Sbjct: 442 HTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPEQDT---FYKQNPNSIVRVYH 496
Query: 403 SSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL--SAEYATVRPKILSLN 460
S ++LL DGRV GG + ++P YL S RPKI +
Sbjct: 497 SISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI-TRT 549
Query: 461 ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVY 520
T K ++ S + +S LI TH+ +QR + L L + SY +
Sbjct: 550 STQSVKVGGRITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL-TLTNNGGNSYSF 604
Query: 521 HLAAVAPSTAEIAPPGYYLLFVVH-AEIPS 549
+ PS + +A PGY++LFV++ A +PS
Sbjct: 605 QV----PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 178/450 (39%), Gaps = 53/450 (11%)
Query: 113 MVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYAT 172
+ + D +C S+ NG +V +GG ND + + D WI P + R Y +
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGG-ND----AKKTSLYDSSSDSWIPGPD-MQVARGYQS 274
Query: 173 NQILPDX-----XXXXXXXXXQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP 226
+ + D + N E Y P S S P + L + LY
Sbjct: 275 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GLY- 329
Query: 227 FVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGS 286
D + ++F + +F + + Y D ++ S+ + D G+
Sbjct: 330 ----RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 385
Query: 287 T----SVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVM 342
+V+ +I+ GG+ + + AT I + G + N + + R
Sbjct: 386 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTF 441
Query: 343 GDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYH 402
++LP+G I G + G +E + P+ P IY P + T F P++ R+YH
Sbjct: 442 HTSVVLPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPEQDT---FYKQNPNSIVRVYH 496
Query: 403 SSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL--SAEYATVRPKILSLN 460
S ++LL DGRV GG + ++P YL S RPKI +
Sbjct: 497 SISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI-TRT 549
Query: 461 ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVY 520
T K ++ S + +S LI TH+ +QR + L L + SY +
Sbjct: 550 STQSVKVGGRITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL-TLTNNGGNSYSF 604
Query: 521 HLAAVAPSTAEIAPPGYYLLFVVH-AEIPS 549
+ PS + +A PGY++LFV++ A +PS
Sbjct: 605 QV----PSDSGVALPGYWMLFVMNSAGVPS 630
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 28/265 (10%)
Query: 288 SVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVMGDMIL 347
+V+ +I+ GG+ + + AT I + G + N + + R ++
Sbjct: 408 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHTSVV 463
Query: 348 LPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAIL 407
LP+G I G + G +E + P+ P IY P + T F P++ R+YHS ++L
Sbjct: 464 LPDGSTFITGGQRRGIP-FEDST-PVFTPEIYVPEQDT---FYKQNPNSIVRVYHSISLL 518
Query: 408 LTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL--SAEYATVRPKILSLNETIGY 465
L DGRV GG + ++P YL S RPKI + T
Sbjct: 519 LPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI-TRTSTQSV 571
Query: 466 KATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVYHLAAV 525
K ++ S + +S LI TH+ +QR + L L + SY + +
Sbjct: 572 KVGGRITISTDSSIS----KASLIRYGTATHTVNTDQRRIPL-TLTNNGGNSYSFQV--- 623
Query: 526 APSTAEIAPPGYYLLFVVH-AEIPS 549
PS + +A PGY++LFV++ A +PS
Sbjct: 624 -PSDSGVALPGYWMLFVMNSAGVPS 647
>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide
pdb|1WAK|A Chain A, X-Ray Structure Of Srpk1
Length = 397
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 RCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDG 140
+CR ++HTD +IL V R L + W SG+ P+G+ V + G
Sbjct: 165 KCR------IIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAG 218
Query: 141 DHVVRTFTPCDDDQ 154
+ +V P + ++
Sbjct: 219 NFLVNPLEPKNAEK 232
>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its
Substrate AsfSF2
Length = 381
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 RCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDG 140
+CR ++HTD +IL V R L + W SG+ P+G+ V + G
Sbjct: 149 KCR------IIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAG 202
Query: 141 DHVVRTFTPCDDDQ 154
+ +V P + ++
Sbjct: 203 NFLVNPLEPKNAEK 216
>pdb|3IFE|A Chain A, 1.55 Angstrom Resolution Crystal Structure Of Peptidase T
(Pept-1) From Bacillus Anthracis Str. 'ames Ancestor'
Length = 434
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 198 SDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKE 257
++ D P L L D+ N+ P +H DGN +I+ +Q
Sbjct: 89 ANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQ------ 142
Query: 258 YPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMIC 296
+PE+P +T + LL D++ G T EIM+
Sbjct: 143 FPELPSYKGHTIITTDGTTLLGADDKAGLT----EIMVA 177
>pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|3CK5|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
Length = 371
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 391 VMEPSTRPRMYHSSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSL 437
+ EP+ + ++ I+ G + GG N H Y+F N V L+L
Sbjct: 222 IEEPTIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTL 268
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 29/69 (42%)
Query: 271 STGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPS 330
STG+ L+P + SV+A ICG N A +S+ G L V HA
Sbjct: 202 STGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGC 261
Query: 331 WVMEEMPLP 339
VM P P
Sbjct: 262 VVMAPNPEP 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,175,901
Number of Sequences: 62578
Number of extensions: 717112
Number of successful extensions: 1332
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1314
Number of HSP's gapped (non-prelim): 14
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)