Query 041651
Match_columns 557
No_of_seqs 351 out of 1950
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 1.2E-46 2.6E-51 366.6 24.9 239 52-298 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 2.4E-36 5.3E-41 332.0 27.4 268 58-407 283-568 (571)
3 KOG4441 Proteins containing BT 100.0 5.8E-34 1.3E-38 313.2 24.8 251 127-447 283-550 (571)
4 PHA02713 hypothetical protein; 100.0 7.3E-33 1.6E-37 305.3 23.5 251 98-445 273-535 (557)
5 cd02851 Galactose_oxidase_C_te 100.0 9E-34 2E-38 238.4 12.1 99 448-557 1-101 (101)
6 PHA02713 hypothetical protein; 100.0 3.1E-32 6.7E-37 300.3 23.5 266 29-395 273-543 (557)
7 PF09118 DUF1929: Domain of un 100.0 5.6E-33 1.2E-37 234.1 9.3 97 453-556 1-98 (98)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 1E-29 2.2E-34 265.8 28.1 287 53-422 11-333 (346)
9 PLN02153 epithiospecifier prot 100.0 9.1E-28 2E-32 250.5 30.7 297 35-422 4-326 (341)
10 PHA02790 Kelch-like protein; P 100.0 1.1E-28 2.4E-33 268.1 24.1 218 102-444 251-471 (480)
11 PRK14131 N-acetylneuraminic ac 100.0 1.1E-27 2.4E-32 253.0 27.0 279 109-443 19-368 (376)
12 PHA02790 Kelch-like protein; P 100.0 1.9E-27 4.1E-32 258.6 24.7 208 57-392 269-477 (480)
13 TIGR03548 mutarot_permut cycli 100.0 2.5E-26 5.4E-31 237.9 27.0 273 48-422 3-315 (323)
14 PHA03098 kelch-like protein; P 99.9 1.4E-26 3E-31 255.9 24.5 245 98-445 265-513 (534)
15 PLN02193 nitrile-specifier pro 99.9 3.9E-25 8.5E-30 239.8 30.3 279 37-421 150-454 (470)
16 PHA03098 kelch-like protein; P 99.9 1E-25 2.2E-30 249.0 25.9 254 31-397 267-523 (534)
17 PRK14131 N-acetylneuraminic ac 99.9 4.7E-25 1E-29 233.0 26.8 283 40-391 19-374 (376)
18 PLN02153 epithiospecifier prot 99.9 1.8E-23 3.9E-28 218.2 25.6 258 104-446 4-287 (341)
19 TIGR03547 muta_rot_YjhT mutatr 99.9 1.9E-23 4E-28 218.5 24.4 247 28-360 29-331 (346)
20 PLN02193 nitrile-specifier pro 99.9 6.2E-23 1.3E-27 222.7 28.9 251 99-446 139-413 (470)
21 TIGR03548 mutarot_permut cycli 99.9 8.7E-23 1.9E-27 211.4 23.5 230 39-360 52-313 (323)
22 KOG4693 Uncharacterized conser 99.8 9.6E-18 2.1E-22 160.2 20.8 283 39-421 3-313 (392)
23 KOG4693 Uncharacterized conser 99.7 1.4E-16 3E-21 152.3 15.3 239 29-360 45-312 (392)
24 KOG0379 Kelch repeat-containin 99.6 1.9E-13 4.1E-18 148.6 23.1 258 47-413 58-333 (482)
25 KOG0379 Kelch repeat-containin 99.4 7.6E-12 1.7E-16 136.1 20.4 213 119-422 61-287 (482)
26 KOG4152 Host cell transcriptio 99.3 6.4E-11 1.4E-15 122.4 16.8 276 108-421 18-343 (830)
27 KOG1230 Protein containing rep 99.2 7.5E-10 1.6E-14 112.4 17.7 220 129-419 79-316 (521)
28 KOG4152 Host cell transcriptio 99.1 1.8E-09 3.9E-14 111.9 18.0 281 30-360 9-342 (830)
29 KOG1230 Protein containing rep 99.1 6.1E-10 1.3E-14 113.1 14.3 205 29-256 99-346 (521)
30 PF07250 Glyoxal_oxid_N: Glyox 99.1 2.7E-09 5.8E-14 104.8 16.2 168 142-410 46-226 (243)
31 COG3055 Uncharacterized protei 98.9 1.1E-07 2.4E-12 95.8 18.0 242 37-362 69-361 (381)
32 COG3055 Uncharacterized protei 98.9 2.5E-07 5.5E-12 93.2 19.9 257 115-423 33-362 (381)
33 PF13964 Kelch_6: Kelch motif 98.8 1.4E-08 3E-13 75.0 6.0 50 339-399 1-50 (50)
34 PF01344 Kelch_1: Kelch motif; 98.4 2.4E-07 5.2E-12 67.2 3.3 47 339-396 1-47 (47)
35 PF13964 Kelch_6: Kelch motif 98.4 5.1E-07 1.1E-11 66.5 4.5 46 119-168 2-50 (50)
36 smart00612 Kelch Kelch domain. 98.4 5.2E-07 1.1E-11 65.0 4.4 45 352-407 1-45 (47)
37 smart00612 Kelch Kelch domain. 98.1 3.8E-06 8.2E-11 60.4 5.1 45 130-179 1-47 (47)
38 PF13418 Kelch_4: Galactose ox 98.0 4.7E-06 1E-10 61.0 3.5 48 339-396 1-48 (49)
39 PF13415 Kelch_3: Galactose ox 98.0 1.5E-05 3.3E-10 58.4 5.0 48 350-406 1-48 (49)
40 PF07646 Kelch_2: Kelch motif; 97.9 2.3E-05 4.9E-10 57.4 5.6 49 339-396 1-49 (49)
41 PF01344 Kelch_1: Kelch motif; 97.7 1.3E-05 2.8E-10 58.0 1.2 43 119-165 2-47 (47)
42 PF13415 Kelch_3: Galactose ox 97.7 7E-05 1.5E-09 54.8 5.0 44 128-175 1-48 (49)
43 PF13418 Kelch_4: Galactose ox 97.6 0.0001 2.2E-09 53.8 4.8 23 167-189 1-23 (49)
44 PF07646 Kelch_2: Kelch motif; 97.3 0.00035 7.7E-09 51.1 4.1 41 120-164 3-48 (49)
45 KOG0286 G-protein beta subunit 97.2 0.18 3.8E-06 50.3 23.2 251 99-420 79-336 (343)
46 PLN02772 guanylate kinase 97.0 0.002 4.4E-08 67.6 7.5 70 339-420 24-96 (398)
47 PRK11138 outer membrane biogen 96.8 0.43 9.4E-06 50.8 24.6 242 98-418 131-384 (394)
48 PRK13684 Ycf48-like protein; P 96.6 1.1 2.4E-05 46.6 30.7 74 328-419 245-322 (334)
49 PLN02772 guanylate kinase 96.4 0.0096 2.1E-07 62.6 8.2 66 120-188 26-96 (398)
50 TIGR03300 assembly_YfgL outer 96.1 2.3 5E-05 44.7 26.5 54 98-159 116-171 (377)
51 PRK11028 6-phosphogluconolacto 95.6 3.2 6.9E-05 42.8 28.1 138 27-195 11-153 (330)
52 PF13854 Kelch_5: Kelch motif 95.6 0.027 5.8E-07 39.6 4.7 41 336-383 1-41 (42)
53 TIGR01640 F_box_assoc_1 F-box 95.5 1.7 3.6E-05 42.4 18.9 142 98-252 71-230 (230)
54 COG4257 Vgb Streptogramin lyas 95.4 2.3 5E-05 42.5 18.6 141 98-269 125-279 (353)
55 PRK11138 outer membrane biogen 95.3 4.8 0.0001 42.7 27.4 56 99-159 81-146 (394)
56 COG4257 Vgb Streptogramin lyas 95.1 4.1 8.8E-05 40.8 21.8 225 99-412 85-327 (353)
57 TIGR03866 PQQ_ABC_repeats PQQ- 94.9 4.4 9.6E-05 40.1 28.0 133 98-255 12-150 (300)
58 cd00200 WD40 WD40 domain, foun 94.9 3.8 8.3E-05 39.2 27.7 133 99-254 33-169 (289)
59 TIGR03866 PQQ_ABC_repeats PQQ- 94.8 4.7 0.0001 39.9 27.3 133 99-256 55-193 (300)
60 KOG0310 Conserved WD40 repeat- 94.7 2.8 6E-05 44.6 18.2 245 96-421 47-301 (487)
61 KOG0315 G-protein beta subunit 94.6 4.6 0.0001 39.7 18.0 52 96-150 60-113 (311)
62 TIGR03300 assembly_YfgL outer 93.7 11 0.00023 39.7 22.7 53 99-159 77-131 (377)
63 PRK11028 6-phosphogluconolacto 93.6 9.9 0.00021 39.0 25.8 140 99-253 14-159 (330)
64 PF13854 Kelch_5: Kelch motif 93.2 0.093 2E-06 36.9 2.9 25 164-189 1-25 (42)
65 KOG0310 Conserved WD40 repeat- 93.1 7.3 0.00016 41.6 17.7 77 99-186 135-215 (487)
66 PF10282 Lactonase: Lactonase, 92.9 13 0.00029 38.7 24.3 150 98-253 16-177 (345)
67 PF14870 PSII_BNR: Photosynthe 92.8 2.8 6.1E-05 43.0 14.2 160 38-244 134-297 (302)
68 PF13360 PQQ_2: PQQ-like domai 92.5 9.4 0.0002 36.8 17.2 94 30-158 5-101 (238)
69 TIGR01640 F_box_assoc_1 F-box 91.6 4.1 8.9E-05 39.7 13.5 151 233-418 5-161 (230)
70 PLN00181 protein SPA1-RELATED; 91.4 21 0.00046 41.7 21.3 234 122-421 488-730 (793)
71 PF08450 SGL: SMP-30/Gluconola 91.4 15 0.00033 35.9 20.3 75 98-184 23-102 (246)
72 PRK13684 Ycf48-like protein; P 90.9 22 0.00048 36.9 23.9 74 329-419 204-279 (334)
73 PF07893 DUF1668: Protein of u 90.5 6.8 0.00015 41.0 14.5 60 51-138 68-127 (342)
74 PF08450 SGL: SMP-30/Gluconola 90.4 16 0.00034 35.8 16.5 146 99-258 62-220 (246)
75 KOG0315 G-protein beta subunit 90.4 20 0.00043 35.5 21.3 249 99-421 22-280 (311)
76 KOG2437 Muskelin [Signal trans 90.3 0.33 7.2E-06 51.8 4.3 129 32-188 233-395 (723)
77 KOG2437 Muskelin [Signal trans 89.9 0.28 6E-06 52.3 3.4 138 32-188 292-457 (723)
78 PF12768 Rax2: Cortical protei 89.8 2.1 4.6E-05 43.4 9.7 120 15-162 3-130 (281)
79 KOG0286 G-protein beta subunit 89.3 27 0.00058 35.4 18.9 165 229-448 104-275 (343)
80 KOG0266 WD40 repeat-containing 87.7 46 0.001 36.2 22.7 133 99-253 183-321 (456)
81 PF07893 DUF1668: Protein of u 85.8 15 0.00033 38.4 13.5 121 126-256 74-213 (342)
82 PTZ00421 coronin; Provisional 85.3 64 0.0014 35.6 23.3 24 124-150 132-156 (493)
83 PF10282 Lactonase: Lactonase, 85.3 50 0.0011 34.3 21.5 85 38-150 74-174 (345)
84 PF13088 BNR_2: BNR repeat-lik 81.5 6.1 0.00013 39.4 8.2 120 38-183 145-275 (275)
85 KOG0291 WD40-repeat-containing 81.2 1.1E+02 0.0023 35.1 24.0 51 97-150 330-380 (893)
86 PF13360 PQQ_2: PQQ-like domai 81.1 41 0.00089 32.2 13.8 140 231-420 34-183 (238)
87 PTZ00421 coronin; Provisional 80.1 66 0.0014 35.5 16.2 50 98-150 149-198 (493)
88 PF13088 BNR_2: BNR repeat-lik 78.5 30 0.00064 34.4 12.1 131 100-238 137-275 (275)
89 PTZ00420 coronin; Provisional 78.2 61 0.0013 36.4 15.3 135 98-253 149-296 (568)
90 PF14870 PSII_BNR: Photosynthe 77.3 92 0.002 32.0 21.8 244 105-421 4-254 (302)
91 KOG0272 U4/U6 small nuclear ri 76.4 96 0.0021 33.0 14.8 79 99-189 243-325 (459)
92 PLN00033 photosystem II stabil 75.9 1.1E+02 0.0024 32.8 15.9 122 101-244 264-392 (398)
93 cd00200 WD40 WD40 domain, foun 75.4 74 0.0016 30.0 22.9 135 98-255 74-212 (289)
94 KOG0279 G protein beta subunit 74.3 76 0.0016 32.0 12.8 137 98-253 86-225 (315)
95 KOG0271 Notchless-like WD40 re 73.8 4.9 0.00011 41.8 4.7 56 348-421 124-179 (480)
96 KOG0649 WD40 repeat protein [G 73.1 1E+02 0.0022 30.6 14.2 83 99-190 138-229 (325)
97 PRK04792 tolB translocation pr 72.3 69 0.0015 34.8 13.6 91 97-194 286-376 (448)
98 PLN00181 protein SPA1-RELATED; 71.2 2.1E+02 0.0046 33.4 23.1 88 98-195 556-645 (793)
99 KOG0296 Angio-associated migra 68.6 1.1E+02 0.0024 31.9 13.0 134 98-256 87-226 (399)
100 COG5184 ATS1 Alpha-tubulin sup 68.5 1.8E+02 0.0039 31.5 19.4 86 101-187 90-203 (476)
101 KOG0296 Angio-associated migra 68.0 1.6E+02 0.0035 30.8 16.6 49 99-150 172-220 (399)
102 COG1520 FOG: WD40-like repeat 66.2 1.7E+02 0.0038 30.5 25.1 262 99-419 80-354 (370)
103 KOG0282 mRNA splicing factor [ 65.7 60 0.0013 35.0 10.7 90 92-195 277-369 (503)
104 PRK03629 tolB translocation pr 64.2 1.3E+02 0.0028 32.4 13.7 84 98-189 312-395 (429)
105 PF15418 DUF4625: Domain of un 62.5 41 0.00089 30.0 7.8 88 452-543 13-114 (132)
106 PF03089 RAG2: Recombination a 62.4 52 0.0011 33.3 9.0 82 335-421 83-175 (337)
107 TIGR02800 propeller_TolB tol-p 61.7 1.8E+02 0.004 30.6 14.2 87 97-190 258-344 (417)
108 KOG2055 WD40 repeat protein [G 59.6 2.6E+02 0.0056 30.3 14.7 225 125-420 221-456 (514)
109 PRK05137 tolB translocation pr 59.2 1.8E+02 0.0038 31.3 13.6 83 97-186 270-352 (435)
110 KOG0272 U4/U6 small nuclear ri 57.6 17 0.00036 38.4 5.0 81 100-189 286-367 (459)
111 cd02849 CGTase_C_term Cgtase ( 57.0 1E+02 0.0022 25.0 8.5 75 453-553 2-78 (81)
112 KOG0291 WD40-repeat-containing 56.9 77 0.0017 36.2 10.1 80 98-185 459-538 (893)
113 PF07433 DUF1513: Protein of u 56.8 2.3E+02 0.0049 29.2 12.9 97 233-358 16-118 (305)
114 KOG2055 WD40 repeat protein [G 56.3 1.9E+02 0.0042 31.2 12.4 134 97-252 280-419 (514)
115 KOG0271 Notchless-like WD40 re 55.6 26 0.00056 36.7 5.8 52 98-152 138-189 (480)
116 KOG0266 WD40 repeat-containing 55.2 3.1E+02 0.0066 29.8 15.8 138 98-253 269-412 (456)
117 PLN00033 photosystem II stabil 55.0 2.9E+02 0.0064 29.5 31.3 70 331-419 318-390 (398)
118 PRK04792 tolB translocation pr 53.2 2.5E+02 0.0054 30.4 13.6 83 96-186 329-411 (448)
119 PRK00178 tolB translocation pr 53.1 2.5E+02 0.0053 29.9 13.5 83 97-187 311-393 (430)
120 KOG0278 Serine/threonine kinas 52.4 2.5E+02 0.0055 28.0 13.1 68 335-421 222-289 (334)
121 PRK01742 tolB translocation pr 51.5 1.7E+02 0.0037 31.4 11.9 81 98-185 229-309 (429)
122 KOG0316 Conserved WD40 repeat- 51.5 85 0.0018 31.0 8.3 90 97-195 81-170 (307)
123 PRK04922 tolB translocation pr 51.5 3.2E+02 0.0069 29.3 14.1 82 97-185 272-353 (433)
124 PRK01742 tolB translocation pr 51.3 3.4E+02 0.0073 29.1 21.3 54 346-420 339-392 (429)
125 KOG0278 Serine/threonine kinas 51.3 1.3E+02 0.0028 30.0 9.5 136 123-300 106-245 (334)
126 COG2706 3-carboxymuconate cycl 50.9 2.1E+02 0.0046 29.8 11.5 94 96-195 214-318 (346)
127 PRK04922 tolB translocation pr 50.6 3E+02 0.0065 29.5 13.7 83 97-187 316-398 (433)
128 TIGR02658 TTQ_MADH_Hv methylam 50.5 1.7E+02 0.0037 30.8 11.2 36 224-259 47-94 (352)
129 PRK05137 tolB translocation pr 49.8 2.6E+02 0.0057 30.0 13.1 82 97-185 226-307 (435)
130 KOG0639 Transducin-like enhanc 49.8 99 0.0022 33.7 9.2 140 235-421 433-573 (705)
131 PLN02919 haloacid dehalogenase 49.7 1.5E+02 0.0032 36.1 12.0 61 122-188 808-879 (1057)
132 PRK03629 tolB translocation pr 48.3 3.8E+02 0.0082 28.8 21.2 141 98-259 224-371 (429)
133 KOG0289 mRNA splicing factor [ 48.1 3.8E+02 0.0083 28.8 13.3 123 224-397 349-474 (506)
134 PF07433 DUF1513: Protein of u 47.8 1.9E+02 0.0042 29.7 10.7 105 52-187 7-120 (305)
135 PF03089 RAG2: Recombination a 47.1 52 0.0011 33.3 6.3 45 94-138 128-174 (337)
136 PTZ00420 coronin; Provisional 45.4 4.9E+02 0.011 29.3 25.9 139 98-255 55-202 (568)
137 cd00216 PQQ_DH Dehydrogenases 44.5 4.6E+02 0.01 28.7 14.6 27 230-256 58-87 (488)
138 PF12768 Rax2: Cortical protei 43.9 69 0.0015 32.5 6.9 61 98-162 17-81 (281)
139 PRK00178 tolB translocation pr 43.5 4.3E+02 0.0093 28.1 14.2 84 97-187 267-350 (430)
140 KOG0299 U3 snoRNP-associated p 43.0 4.6E+02 0.01 28.3 15.9 138 53-247 207-351 (479)
141 KOG0308 Conserved WD40 repeat- 40.6 3.1E+02 0.0067 31.0 11.4 146 229-420 80-234 (735)
142 TIGR02658 TTQ_MADH_Hv methylam 40.1 4.7E+02 0.01 27.5 24.4 53 97-150 77-136 (352)
143 TIGR03075 PQQ_enz_alc_DH PQQ-d 40.0 1.7E+02 0.0036 32.6 9.8 56 124-184 116-171 (527)
144 PF10633 NPCBM_assoc: NPCBM-as 39.7 91 0.002 24.6 5.7 70 464-543 2-74 (78)
145 PF06433 Me-amine-dh_H: Methyl 39.6 2.4E+02 0.0052 29.5 10.0 137 97-258 118-285 (342)
146 KOG0263 Transcription initiati 38.3 1.2E+02 0.0026 34.5 8.1 83 98-189 558-641 (707)
147 KOG0649 WD40 repeat protein [G 38.2 2.5E+02 0.0054 28.0 9.2 49 98-150 179-235 (325)
148 PF05096 Glu_cyclase_2: Glutam 38.1 2.9E+02 0.0063 27.8 10.1 101 231-383 53-158 (264)
149 PF13540 RCC1_2: Regulator of 37.0 26 0.00055 22.5 1.7 22 399-421 7-28 (30)
150 PRK02889 tolB translocation pr 36.1 5.1E+02 0.011 27.7 12.6 81 98-185 221-301 (427)
151 PRK01029 tolB translocation pr 36.0 2E+02 0.0043 31.0 9.4 60 97-160 351-410 (428)
152 TIGR02800 propeller_TolB tol-p 35.8 5.3E+02 0.012 27.0 17.9 139 97-255 214-359 (417)
153 COG1520 FOG: WD40-like repeat 35.3 5.3E+02 0.012 26.8 13.3 136 230-418 65-205 (370)
154 KOG0303 Actin-binding protein 35.2 1.8E+02 0.004 30.8 8.3 80 97-186 154-235 (472)
155 KOG0263 Transcription initiati 33.6 97 0.0021 35.3 6.4 48 99-150 601-649 (707)
156 KOG0305 Anaphase promoting com 33.6 6.9E+02 0.015 27.5 21.9 81 98-189 198-280 (484)
157 PRK02889 tolB translocation pr 33.5 5.8E+02 0.013 27.2 12.6 86 95-187 262-347 (427)
158 KOG0276 Vesicle coat complex C 33.1 3.3E+02 0.0072 30.7 10.1 49 99-150 209-257 (794)
159 KOG0641 WD40 repeat protein [G 33.1 4.8E+02 0.01 25.6 16.2 199 172-442 37-271 (350)
160 TIGR02608 delta_60_rpt delta-6 32.5 42 0.00091 25.1 2.4 34 344-383 5-38 (55)
161 PF10670 DUF4198: Domain of un 32.5 2.4E+02 0.0052 26.6 8.5 68 460-544 144-211 (215)
162 PF03088 Str_synth: Strictosid 32.1 91 0.002 25.8 4.6 69 55-134 4-73 (89)
163 PF00868 Transglut_N: Transglu 32.0 3.4E+02 0.0074 23.5 9.1 22 519-543 94-115 (118)
164 PF08662 eIF2A: Eukaryotic tra 30.6 85 0.0018 29.8 4.9 57 346-419 107-163 (194)
165 COG3490 Uncharacterized protei 30.3 2.4E+02 0.0051 28.9 7.9 90 337-444 110-203 (366)
166 PF08662 eIF2A: Eukaryotic tra 29.2 1.8E+02 0.0038 27.5 6.8 79 98-186 84-162 (194)
167 PF14781 BBS2_N: Ciliary BBSom 29.1 4.3E+02 0.0092 23.8 8.7 49 98-150 74-125 (136)
168 KOG0305 Anaphase promoting com 28.2 5.8E+02 0.013 28.1 11.1 56 227-300 222-279 (484)
169 TIGR03075 PQQ_enz_alc_DH PQQ-d 27.8 2.6E+02 0.0056 31.1 8.8 94 290-417 69-172 (527)
170 PF00400 WD40: WD domain, G-be 27.6 91 0.002 20.3 3.3 26 120-148 14-39 (39)
171 PF07705 CARDB: CARDB; InterP 27.6 3.2E+02 0.0069 21.9 7.5 73 456-544 8-83 (101)
172 KOG0289 mRNA splicing factor [ 27.6 3.9E+02 0.0085 28.7 9.3 84 98-188 412-496 (506)
173 PLN02919 haloacid dehalogenase 27.6 2.1E+02 0.0045 34.9 8.5 50 98-150 826-888 (1057)
174 COG3386 Gluconolactonase [Carb 25.9 7E+02 0.015 25.6 10.9 57 122-187 217-276 (307)
175 PRK04043 tolB translocation pr 25.4 8E+02 0.017 26.3 11.8 61 97-161 213-273 (419)
176 cd00604 IPT_CGTD IPT domain (d 25.1 3.7E+02 0.0079 21.7 8.6 75 454-554 1-77 (81)
177 COG3490 Uncharacterized protei 25.1 4.3E+02 0.0094 27.0 8.6 84 97-185 91-179 (366)
178 PRK01029 tolB translocation pr 25.0 8.7E+02 0.019 26.0 12.5 58 122-185 331-388 (428)
179 TIGR03074 PQQ_membr_DH membran 25.0 3.4E+02 0.0074 31.8 9.3 82 96-184 640-741 (764)
180 KOG1445 Tumor-specific antigen 25.0 2.1E+02 0.0045 32.3 6.9 86 99-190 702-787 (1012)
181 KOG0301 Phospholipase A2-activ 24.2 1.1E+03 0.024 27.0 19.5 86 99-195 37-127 (745)
182 KOG0294 WD40 repeat-containing 23.9 8.2E+02 0.018 25.3 18.7 23 125-150 49-71 (362)
183 KOG0639 Transducin-like enhanc 23.8 2.4E+02 0.0052 30.9 7.0 56 345-418 471-528 (705)
184 COG2706 3-carboxymuconate cycl 23.2 8.8E+02 0.019 25.4 16.3 146 97-255 167-328 (346)
185 PF13570 PQQ_3: PQQ-like domai 23.0 1.6E+02 0.0034 19.8 3.9 36 330-383 4-40 (40)
186 KOG1036 Mitotic spindle checkp 22.5 4.5E+02 0.0098 27.0 8.3 87 98-195 117-206 (323)
187 KOG0268 Sof1-like rRNA process 22.5 2.8E+02 0.006 29.2 6.9 132 233-421 158-294 (433)
188 COG0823 TolB Periplasmic compo 22.3 4.9E+02 0.011 28.1 9.3 88 92-186 257-344 (425)
189 KOG0301 Phospholipase A2-activ 21.9 5E+02 0.011 29.6 9.2 59 119-189 221-280 (745)
190 KOG0647 mRNA export protein (c 21.8 4.3E+02 0.0093 27.2 7.9 50 97-150 94-145 (347)
191 PF08268 FBA_3: F-box associat 21.7 5.3E+02 0.011 22.2 8.4 60 98-160 21-87 (129)
192 KOG0279 G protein beta subunit 21.4 7.4E+02 0.016 25.2 9.4 83 99-189 129-214 (315)
193 TIGR03437 Soli_cterm Solibacte 21.3 1.9E+02 0.004 28.2 5.3 37 518-557 179-215 (215)
194 KOG1036 Mitotic spindle checkp 20.5 3.3E+02 0.0072 27.9 6.9 79 98-189 76-155 (323)
195 KOG1427 Uncharacterized conser 20.1 2E+02 0.0043 29.4 5.3 92 402-511 120-215 (443)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=1.2e-46 Score=366.60 Aligned_cols=239 Identities=57% Similarity=1.080 Sum_probs=217.0
Q ss_pred eEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccCCCcccccCeecCCCcE
Q 041651 52 MHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTL 131 (557)
Q Consensus 52 ~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i 131 (557)
||++|++++||+++++++.|.+++.+|+|+||..+.|.+.++||++++.+||+.|++++++...++.||+++++|+||++
T Consensus 1 mh~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~l 80 (243)
T PF07250_consen 1 MHMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRL 80 (243)
T ss_pred CeEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCE
Confidence 79999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCeEEEEcCCC-CCCCceecCCcccccccCcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeee
Q 041651 132 VQSGGYNDGDHVVRTFTPCD-DDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFML 210 (557)
Q Consensus 132 ~v~GG~~~g~~~v~~ydp~~-~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~ 210 (557)
+++||+.+|.+.++.|+|++ +++++|.+.++.|..+|||+++++|+||+|+|+||+...++|+||+... ......+
T Consensus 81 l~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~---~~~~~~~ 157 (243)
T PF07250_consen 81 LQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP---GPGPVTL 157 (243)
T ss_pred EEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC---CCCceee
Confidence 99999988999999999985 3468999987669999999999999999999999999999999976211 1233345
Q ss_pred cccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecC--c-CCCCCc
Q 041651 211 HFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPL--D-ERNGST 287 (557)
Q Consensus 211 ~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~--~-~~~~~~ 287 (557)
+++..+.+..+.++||+++++|||+||+++++.+++||++++++.+.+|.||++ .|.||.+|++||||+ . +++|
T Consensus 158 ~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~-~R~YP~sgssvmLPl~~~~~~~~-- 234 (243)
T PF07250_consen 158 PFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGG-PRNYPASGSSVMLPLTDTPPNNY-- 234 (243)
T ss_pred ecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCC-ceecCCCcceEEecCccCCCCCC--
Confidence 666666666789999999999999999999999999999999997789999988 899999999999999 5 6777
Q ss_pred ccccEEEEEcC
Q 041651 288 SVQAEIMICGG 298 (557)
Q Consensus 288 ~~~g~I~v~GG 298 (557)
..+|+||||
T Consensus 235 --~~evlvCGG 243 (243)
T PF07250_consen 235 --TAEVLVCGG 243 (243)
T ss_pred --CeEEEEeCC
Confidence 899999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=331.96 Aligned_cols=268 Identities=21% Similarity=0.337 Sum_probs=221.7
Q ss_pred eCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCC
Q 041651 58 HDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGY 137 (557)
Q Consensus 58 ~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~ 137 (557)
..++++++||... .++ ....+++|||.+++|..++.++.++|..+++..+|+||++||.
T Consensus 283 ~~~~l~~vGG~~~--------~~~-------------~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~ 341 (571)
T KOG4441|consen 283 VSGKLVAVGGYNR--------QGQ-------------SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGY 341 (571)
T ss_pred CCCeEEEECCCCC--------CCc-------------ccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccc
Confidence 3688999999752 111 2346899999999999999999999998888899999999999
Q ss_pred CC---CCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcCC----CceeEe-cCCCCCCCCCceee
Q 041651 138 ND---GDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRRQ----FNYEFY-PKSDEDLSFPQTFM 209 (557)
Q Consensus 138 ~~---g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~----~~~E~y-P~~~~~~~~~~w~~ 209 (557)
+. ..+++++|||. +++|+.+++ |+.+|..++++++ +|+||++||.++ .++|.| |.+ ++|..
T Consensus 342 ~~~~~~l~~ve~YD~~---~~~W~~~a~-M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~------~~W~~ 410 (571)
T KOG4441|consen 342 DSGSDRLSSVERYDPR---TNQWTPVAP-MNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVT------NKWTP 410 (571)
T ss_pred cCCCcccceEEEecCC---CCceeccCC-ccCccccceeEEE-CCEEEEEeccccccccccEEEecCCC------Ccccc
Confidence 73 25899999999 899999986 9999999999999 999999999986 368999 884 48975
Q ss_pred ec-ccccccccccCCccceEEEeeCCcEEEEEc--------CceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecC
Q 041651 210 LH-FLLETRDYAENNLYPFVHLLPDGNLFIFAN--------TRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPL 280 (557)
Q Consensus 210 ~~-~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg--------~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~ 280 (557)
.+ ++.. .+-+..+..+|+||++|| +++++|||.+|+|. .+|+|+. +|.++ |++++
T Consensus 411 va~m~~~--------r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~--~R~~~--g~a~~--- 474 (571)
T KOG4441|consen 411 VAPMLTR--------RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNT--RRSGF--GVAVL--- 474 (571)
T ss_pred cCCCCcc--------eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCccc--ccccc--eEEEE---
Confidence 44 4332 245788889999999999 35899999999998 5997765 68775 66765
Q ss_pred cCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCc
Q 041651 281 DERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGA 359 (557)
Q Consensus 281 ~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~ 359 (557)
+++||++||.+. .. ..+++|+|||.. ++|+.. +|+.+|..++++++ +++||++||.
T Consensus 475 ---------~~~iYvvGG~~~-~~----------~~~~VE~ydp~~--~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~ 531 (571)
T KOG4441|consen 475 ---------NGKIYVVGGFDG-TS----------ALSSVERYDPET--NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGF 531 (571)
T ss_pred ---------CCEEEEECCccC-CC----------ccceEEEEcCCC--CceeEcccCccccccccEEEE-CCEEEEEecc
Confidence 999999999874 21 356799999986 799998 89999999987776 9999999996
Q ss_pred CCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCccccccccee
Q 041651 360 QLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAIL 407 (557)
Q Consensus 360 ~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~l 407 (557)
+ |. .-+.++|+|||.+| +|+...++...|...+++++
T Consensus 532 ~-~~-------~~l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 532 D-GN-------NNLNTVECYDPETD---TWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred c-Cc-------cccceeEEcCCCCC---ceeeCCCccccccCcceEEe
Confidence 5 32 23568999999999 99999888788887766554
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=313.17 Aligned_cols=251 Identities=23% Similarity=0.361 Sum_probs=205.5
Q ss_pred CCCcEEEEcCCCC---CCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcC-C----CceeEe-cC
Q 041651 127 PNGTLVQSGGYND---GDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRR-Q----FNYEFY-PK 197 (557)
Q Consensus 127 ~dG~i~v~GG~~~---g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~-~----~~~E~y-P~ 197 (557)
..+.|+++||... ..+++++|||. +++|..+++ |+.+|..++++++ +|+|||+||.+ + .++|+| |.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~---~~~w~~~a~-m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPK---TNEWSSLAP-MPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCC---cCcEeecCC-CCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCC
Confidence 3589999999863 25799999999 899999996 9999999999999 89999999999 3 368999 88
Q ss_pred CCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCc-------eEEEeCCCCeEEEEecCCCCCCCCccC
Q 041651 198 SDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTR-------SILFDYKQNKVLKEYPEIPGADPRNYP 270 (557)
Q Consensus 198 ~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~-------~~~yDp~t~~W~~~~p~lp~~~~r~~~ 270 (557)
. ++|...+.|...+ .-+.++..+|+||++||.+ +|+|||.+|+|. .+++|+. +|..+
T Consensus 358 ~------~~W~~~a~M~~~R-------~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~--~r~~~ 421 (571)
T KOG4441|consen 358 T------NQWTPVAPMNTKR-------SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLT--RRSGH 421 (571)
T ss_pred C------CceeccCCccCcc-------ccceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCc--ceeee
Confidence 4 3798765554322 2356778899999999954 899999999998 5887764 56554
Q ss_pred CCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcC
Q 041651 271 STGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLP 349 (557)
Q Consensus 271 ~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lp 349 (557)
|++++ +|+||++||.+.... .++++++|||.. ++|+.. +|+.+|..++++++
T Consensus 422 --gv~~~------------~g~iYi~GG~~~~~~----------~l~sve~YDP~t--~~W~~~~~M~~~R~~~g~a~~- 474 (571)
T KOG4441|consen 422 --GVAVL------------GGKLYIIGGGDGSSN----------CLNSVECYDPET--NTWTLIAPMNTRRSGFGVAVL- 474 (571)
T ss_pred --EEEEE------------CCEEEEEcCcCCCcc----------ccceEEEEcCCC--CceeecCCcccccccceEEEE-
Confidence 66665 999999999874321 368999999986 799998 99999999998777
Q ss_pred CCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEecCCCCcccccccc
Q 041651 350 NGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNPHIYYNFTNV 429 (557)
Q Consensus 350 dG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~~~~~~~~~~ 429 (557)
+|+||++||.+ +. ....++|.|||.++ +|+.+++|+.+|..++++++ ++++|+.||.+...
T Consensus 475 ~~~iYvvGG~~-~~-------~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~------ 535 (571)
T KOG4441|consen 475 NGKIYVVGGFD-GT-------SALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNN------ 535 (571)
T ss_pred CCEEEEECCcc-CC-------CccceEEEEcCCCC---ceeEcccCccccccccEEEE--CCEEEEEecccCcc------
Confidence 99999999987 32 22457999999999 99999999999999988887 99999999965432
Q ss_pred cCCCcceEEEEcCCCCCC
Q 041651 430 VYPTDLSLEAYSPPYLSA 447 (557)
Q Consensus 430 ~~~~~~~vE~y~Ppyl~~ 447 (557)
+ ..++|+|+|..=..
T Consensus 536 -~--l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 536 -N--LNTVECYDPETDTW 550 (571)
T ss_pred -c--cceeEEcCCCCCce
Confidence 2 55899999988543
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-33 Score=305.32 Aligned_cols=251 Identities=14% Similarity=0.188 Sum_probs=194.5
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCceecCCcccccccCcceEE
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYND---GDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQ 174 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~---g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~ 174 (557)
.+.+|||.+++|+.++.++..++..+++..+|+||++||... ..+++++|||. +++|.++++ |+.+|.+++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~---~n~W~~~~~-m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE---NKIHVELPP-MIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC---CCeEeeCCC-CcchhhceeEE
Confidence 478999999999999987766665566667999999999742 24789999999 899999986 99999999999
Q ss_pred EecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeE
Q 041651 175 ILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKV 254 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W 254 (557)
++ +|+|||+||.++.. .+ . ++++|||.+++|
T Consensus 349 ~~-~g~IYviGG~~~~~--------------------~~-~---------------------------sve~Ydp~~~~W 379 (557)
T PHA02713 349 VI-DDTIYAIGGQNGTN--------------------VE-R---------------------------TIECYTMGDDKW 379 (557)
T ss_pred EE-CCEEEEECCcCCCC--------------------CC-c---------------------------eEEEEECCCCeE
Confidence 98 89999999975321 00 0 256999999999
Q ss_pred EEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCcc-ccc-c-ccc----cccccCCceEEEEecCC
Q 041651 255 LKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNAS-FAL-A-TQG----VFIRAISTCGRLVVSHA 327 (557)
Q Consensus 255 ~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~-~~~-~-~~~----~~~pa~~s~~~~d~~~~ 327 (557)
. .+++||. +|..+ +++++ +++||++||.+... +.. . .+. .....++++++|||..
T Consensus 380 ~-~~~~mp~--~r~~~--~~~~~------------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t- 441 (557)
T PHA02713 380 K-MLPDMPI--ALSSY--GMCVL------------DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN- 441 (557)
T ss_pred E-ECCCCCc--ccccc--cEEEE------------CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC-
Confidence 8 5898876 56654 45554 89999999975210 000 0 000 0001257899999986
Q ss_pred CCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCC-CCCCceEecCCCCCcccccccc
Q 041651 328 NPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSE-QTSRRFSVMEPSTRPRMYHSSA 405 (557)
Q Consensus 328 ~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t-~~g~~W~~~~~~~~~R~yhs~a 405 (557)
++|+.. +|+.+|..++++++ +|+|||+||.+ +.. .....+|+|||.+ + +|+.+++|+.+|..|+++
T Consensus 442 -d~W~~v~~m~~~r~~~~~~~~-~~~IYv~GG~~-~~~------~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 442 -NIWETLPNFWTGTIRPGVVSH-KDDIYVVCDIK-DEK------NVKTCIFRYNTNTYN---GWELITTTESRLSALHTI 509 (557)
T ss_pred -CeEeecCCCCcccccCcEEEE-CCEEEEEeCCC-CCC------ccceeEEEecCCCCC---CeeEccccCcccccceeE
Confidence 799998 99999999988776 99999999975 211 1123589999999 9 999999999999999988
Q ss_pred eeccCCcEEEecCCCCcccccccccCCCcceEEEEcCCCC
Q 041651 406 ILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL 445 (557)
Q Consensus 406 ~llpdG~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl 445 (557)
++ +|+||++||.... .++|+|+|..=
T Consensus 510 ~~--~~~iyv~Gg~~~~------------~~~e~yd~~~~ 535 (557)
T PHA02713 510 LH--DNTIMMLHCYESY------------MLQDTFNVYTY 535 (557)
T ss_pred EE--CCEEEEEeeecce------------eehhhcCcccc
Confidence 88 9999999997431 26899999874
No 5
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=9e-34 Score=238.40 Aligned_cols=99 Identities=27% Similarity=0.397 Sum_probs=88.5
Q ss_pred ccCCCCCceecCC-ccccCCceEEEEEEeecccccceEEEEEEcCCccccccCCCcceEEeEeEEEeecCcceEEEEEEC
Q 041651 448 EYATVRPKILSLN-ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVYHLAAVA 526 (557)
Q Consensus 448 ~~~~~RP~i~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~ 526 (557)
|+++.||+|.++| .+++||++|+|+++. .+.+|+|+|++++||++|||||+|.|+++. ..+ .++++++
T Consensus 1 g~~a~RP~I~~~p~~~i~yG~~f~v~~~~------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~--~~~---~~~~v~~ 69 (101)
T cd02851 1 GTLASRPVITSASTQTAKVGDTITVSTDS------PISSASLVRYGSATHTVNTDQRRIPLTLFS--VGG---NSYSVQI 69 (101)
T ss_pred CCCCCCCeeccCCccccccCCEEEEEEec------cceEEEEEecccccccccCCccEEEeeeEe--cCC---CEEEEEc
Confidence 4578999999999 899999999999862 479999999999999999999999999975 222 3567888
Q ss_pred CCCCCcCCCcceEEEEEc-CCCCCccEEEEcC
Q 041651 527 PSTAEIAPPGYYLLFVVH-AEIPSSGMWVKME 557 (557)
Q Consensus 527 P~~~~~~ppG~ymlf~~~-~gvPS~a~~v~v~ 557 (557)
|+|++|||||||||||++ +||||+|+||+|+
T Consensus 70 P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 70 PSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred CCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 999999999999999995 8999999999985
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-32 Score=300.32 Aligned_cols=266 Identities=14% Similarity=0.168 Sum_probs=201.1
Q ss_pred CCCCCCCCCCceEEccCCcccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCc
Q 041651 29 VLPPYAGSQGEWNLLHESIGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNA 108 (557)
Q Consensus 29 ~~~~~~~~~g~W~~~~~~~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~ 108 (557)
.+..||+..++|..+++++..+..|++++.+++||++||...+ +. ....+++|||.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~--------~~-------------~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFN--------NP-------------SLNKVYKINIENKI 331 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCC--------CC-------------ccceEEEEECCCCe
Confidence 4567999999999998776566677788789999999996311 10 12358999999999
Q ss_pred EEECccCCCcccccCeecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcC
Q 041651 109 YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDG--DHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGG 186 (557)
Q Consensus 109 w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g--~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG 186 (557)
|+.+++++..++..+++..+|+||++||.... .+++++|||. +++|+.+++ |+.+|..++++++ +|+|||+||
T Consensus 332 W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~---~~~W~~~~~-mp~~r~~~~~~~~-~g~IYviGG 406 (557)
T PHA02713 332 HVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMG---DDKWKMLPD-MPIALSSYGMCVL-DQYIYIIGG 406 (557)
T ss_pred EeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECC---CCeEEECCC-CCcccccccEEEE-CCEEEEEeC
Confidence 99999988778777778889999999998532 4689999999 899999986 9999999999988 899999999
Q ss_pred cCCCceeEe-cCCCCCCCCCcee-eecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCCC
Q 041651 187 RRQFNYEFY-PKSDEDLSFPQTF-MLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGA 264 (557)
Q Consensus 187 ~~~~~~E~y-P~~~~~~~~~~w~-~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~ 264 (557)
.+... .+ +. .+. ..... . +.. .-+.+++|||.+|+|+ .+++|+.
T Consensus 407 ~~~~~--~~~~~--------~~~~~~~~~-~-----------------~~~----~~~~ve~YDP~td~W~-~v~~m~~- 452 (557)
T PHA02713 407 RTEHI--DYTSV--------HHMNSIDME-E-----------------DTH----SSNKVIRYDTVNNIWE-TLPNFWT- 452 (557)
T ss_pred CCccc--ccccc--------ccccccccc-c-----------------ccc----ccceEEEECCCCCeEe-ecCCCCc-
Confidence 75421 00 10 000 00000 0 000 0123679999999998 5888865
Q ss_pred CCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCceee
Q 041651 265 DPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMG 343 (557)
Q Consensus 265 ~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~ 343 (557)
+|..+ +++++ +++|||+||.+.... ..+++|+|||.. +++|+.. +|+.+|..+
T Consensus 453 -~r~~~--~~~~~------------~~~IYv~GG~~~~~~----------~~~~ve~Ydp~~-~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 453 -GTIRP--GVVSH------------KDDIYVVCDIKDEKN----------VKTCIFRYNTNT-YNGWELITTTESRLSAL 506 (557)
T ss_pred -ccccC--cEEEE------------CCEEEEEeCCCCCCc----------cceeEEEecCCC-CCCeeEccccCcccccc
Confidence 56654 55655 899999999752111 134678999874 1489998 999999999
Q ss_pred eEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCC
Q 041651 344 DMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPS 395 (557)
Q Consensus 344 ~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~ 395 (557)
+++++ +|+||++||.+ |. .++|+|||.|+ +|+.+++-
T Consensus 507 ~~~~~-~~~iyv~Gg~~-~~----------~~~e~yd~~~~---~W~~~~~~ 543 (557)
T PHA02713 507 HTILH-DNTIMMLHCYE-SY----------MLQDTFNVYTY---EWNHICHQ 543 (557)
T ss_pred eeEEE-CCEEEEEeeec-ce----------eehhhcCcccc---cccchhhh
Confidence 88777 99999999976 31 26899999999 99988775
No 7
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=99.98 E-value=5.6e-33 Score=234.14 Aligned_cols=97 Identities=44% Similarity=0.771 Sum_probs=67.9
Q ss_pred CCceecCCccccCCceEEEEEEeecccccceEEEEEEcCCccccccCCCcceEEeEeEEEeecCcceEEEEEECCCCCCc
Q 041651 453 RPKILSLNETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVYHLAAVAPSTAEI 532 (557)
Q Consensus 453 RP~i~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~P~~~~~ 532 (557)
||+|.++|..+.||++|+|+++.+. ..++.+|+|+|+||+|||+|||||+|+|++.. .++ +++++++|+|++|
T Consensus 1 RP~i~~~p~~i~yg~~~tv~~~~~~--~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~--~~~---~~~~v~~P~~~~v 73 (98)
T PF09118_consen 1 RPVITSAPTTIKYGQTFTVTVTVPS--AASIVKVSLVRPGFVTHSFNMGQRMVELEFVS--GGG---NTVTVTAPPNPNV 73 (98)
T ss_dssp ---EEES-SEEETT-EEEEEE--SS-----ESEEEEEE--EEETTB-SS-EEEEE-EEE--ESS---SEEEEE--S-TTT
T ss_pred CCccccCCCeEecCCEEEEEEECCC--ccceEEEEEEeCCcccccccCCCCEEeeeeec--CCC---CEEEEECCCCCcc
Confidence 9999999999999999999997654 24789999999999999999999999999943 222 6899999999999
Q ss_pred CCCcceEEEEEc-CCCCCccEEEEc
Q 041651 533 APPGYYLLFVVH-AEIPSSGMWVKM 556 (557)
Q Consensus 533 ~ppG~ymlf~~~-~gvPS~a~~v~v 556 (557)
||||||||||++ +||||+|+||+|
T Consensus 74 aPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 74 APPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp S-SEEEEEEEEETTS-B---EEEEE
T ss_pred CCCcCEEEEEEcCCCcccccEEEEC
Confidence 999999999999 999999999997
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=1e-29 Score=265.76 Aligned_cols=287 Identities=14% Similarity=0.142 Sum_probs=187.5
Q ss_pred EEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEEC--CCCcEEECccCC-CcccccCeecCCC
Q 041651 53 HMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDV--ATNAYRPLMVQT-DTWCSSGSVLPNG 129 (557)
Q Consensus 53 h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp--~t~~w~~l~~~~-~~~c~~~~~l~dG 129 (557)
+++++.+++||++||... ..+.+||+ .+++|+.++.++ ..++..+++..++
T Consensus 11 ~~~~~~~~~vyv~GG~~~--------------------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~ 64 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSAG--------------------------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG 64 (346)
T ss_pred ceEEEECCEEEEEccccC--------------------------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECC
Confidence 556567999999998520 12567885 678999999876 4566666777799
Q ss_pred cEEEEcCCCC--------CCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcCCCc-------eeE
Q 041651 130 TLVQSGGYND--------GDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRRQFN-------YEF 194 (557)
Q Consensus 130 ~i~v~GG~~~--------g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~-------~E~ 194 (557)
+|||+||... ..+++++|||. +++|++++..|+.+|..++++++.+|+|||+||.+... .+.
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~---~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 141 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPK---KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSA 141 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECC---CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhh
Confidence 9999999742 13679999999 99999987436667766666633499999999976321 111
Q ss_pred e-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCC
Q 041651 195 Y-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTG 273 (557)
Q Consensus 195 y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g 273 (557)
| +.. +.|... + |...-.-..+ + ...+++++|||.+++|. .+++||.. +|..+ +
T Consensus 142 ~~~~~------~~~~~~--~-----------~~~~~~~~~~--~-~~~~~v~~YDp~t~~W~-~~~~~p~~-~r~~~--~ 195 (346)
T TIGR03547 142 ADKDS------EPKDKL--I-----------AAYFSQPPED--Y-FWNKNVLSYDPSTNQWR-NLGENPFL-GTAGS--A 195 (346)
T ss_pred cCccc------hhhhhh--H-----------HHHhCCChhH--c-CccceEEEEECCCCcee-ECccCCCC-cCCCc--e
Confidence 2 110 011100 0 0000000000 0 00135789999999999 58888742 34432 3
Q ss_pred ceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCce-------eeeE
Q 041651 274 SSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRV-------MGDM 345 (557)
Q Consensus 274 ~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~-------~~~~ 345 (557)
++++ +++|||+||...... .+..++.|++....++|+.. +|+.+|. .+.+
T Consensus 196 ~~~~------------~~~iyv~GG~~~~~~----------~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a 253 (346)
T TIGR03547 196 IVHK------------GNKLLLINGEIKPGL----------RTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFA 253 (346)
T ss_pred EEEE------------CCEEEEEeeeeCCCc----------cchheEEEEecCCCceeeecCCCCCCCCCccccccEEee
Confidence 4443 899999999752111 12345567765445799987 9988763 3334
Q ss_pred EEcCCCeEEEEcCcCCCCC--------Ccc-cCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEe
Q 041651 346 ILLPNGDVIIINGAQLGTA--------GWE-LARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIG 416 (557)
Q Consensus 346 v~lpdG~I~vvGG~~~g~~--------g~~-~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~ 416 (557)
++ .+|+|||+||...... .+. .....+.++|+|||+++ +|+.+++|+.+|.+|+++++ +|+||++
T Consensus 254 ~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~ 327 (346)
T TIGR03547 254 GI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLI 327 (346)
T ss_pred eE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEE
Confidence 45 4999999999752100 000 00111346899999999 99999999999998876555 9999999
Q ss_pred cCCCCc
Q 041651 417 GSNPHI 422 (557)
Q Consensus 417 GG~~~~ 422 (557)
||....
T Consensus 328 GG~~~~ 333 (346)
T TIGR03547 328 GGENSG 333 (346)
T ss_pred eccCCC
Confidence 997543
No 9
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=9.1e-28 Score=250.50 Aligned_cols=297 Identities=13% Similarity=0.154 Sum_probs=200.1
Q ss_pred CCCCceEEccC----CcccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEE
Q 041651 35 GSQGEWNLLHE----SIGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYR 110 (557)
Q Consensus 35 ~~~g~W~~~~~----~~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~ 110 (557)
+..++|..+.. .+..+..|++++.+++||++||.... +. . ....+.+||+.+++|+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~--------~~-~-----------~~~~~~~yd~~~~~W~ 63 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKP--------NE-H-----------IDKDLYVFDFNTHTWS 63 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCC--------CC-c-----------eeCcEEEEECCCCEEE
Confidence 46788999865 34456678888889999999997421 10 0 1134889999999999
Q ss_pred ECccCC---Ccccc-cCeecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCceecCCccc-----ccccCcceEEEecCC
Q 041651 111 PLMVQT---DTWCS-SGSVLPNGTLVQSGGYNDG--DHVVRTFTPCDDDQCDWIELPQHL-----SERRWYATNQILPDG 179 (557)
Q Consensus 111 ~l~~~~---~~~c~-~~~~l~dG~i~v~GG~~~g--~~~v~~ydp~~~~t~~W~~~~~~m-----~~~R~y~s~~~L~dG 179 (557)
.++.+. ...|. ..++..+++||++||.... .+++++||+. +++|+++++ | +.+|..|+++++ ++
T Consensus 64 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~---t~~W~~~~~-~~~~~~p~~R~~~~~~~~-~~ 138 (341)
T PLN02153 64 IAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV---KNEWTFLTK-LDEEGGPEARTFHSMASD-EN 138 (341)
T ss_pred EcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC---CCEEEEecc-CCCCCCCCCceeeEEEEE-CC
Confidence 887642 22232 3345669999999997532 3689999999 899999875 7 778998988877 89
Q ss_pred cEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEec
Q 041651 180 RIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYP 259 (557)
Q Consensus 180 ~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p 259 (557)
+|||+||.+.... ... . ..+ ++.++||+++++|. .++
T Consensus 139 ~iyv~GG~~~~~~--~~~--------~----~~~----------------------------~~v~~yd~~~~~W~-~l~ 175 (341)
T PLN02153 139 HVYVFGGVSKGGL--MKT--------P----ERF----------------------------RTIEAYNIADGKWV-QLP 175 (341)
T ss_pred EEEEECCccCCCc--cCC--------C----ccc----------------------------ceEEEEECCCCeEe-eCC
Confidence 9999999753210 000 0 000 12458999999998 477
Q ss_pred CCCCC-CCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee----
Q 041651 260 EIPGA-DPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME---- 334 (557)
Q Consensus 260 ~lp~~-~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~---- 334 (557)
++... .+|..+ +++++ +++||++||.... +...... ....+.+++||+.. ++|+..
T Consensus 176 ~~~~~~~~r~~~--~~~~~------------~~~iyv~GG~~~~-~~~gG~~--~~~~~~v~~yd~~~--~~W~~~~~~g 236 (341)
T PLN02153 176 DPGENFEKRGGA--GFAVV------------QGKIWVVYGFATS-ILPGGKS--DYESNAVQFFDPAS--GKWTEVETTG 236 (341)
T ss_pred CCCCCCCCCCcc--eEEEE------------CCeEEEEeccccc-cccCCcc--ceecCceEEEEcCC--CcEEeccccC
Confidence 55311 245543 33443 8999999997521 1000000 01256789999886 799975
Q ss_pred cCCCCceeeeEEEcCCCeEEEEcCcCCCC-CCcccCCCCccccEEEcCCCCCCCceEecC-----CCCCcccccccceec
Q 041651 335 EMPLPRVMGDMILLPNGDVIIINGAQLGT-AGWELARGPMTRPIIYRPSEQTSRRFSVME-----PSTRPRMYHSSAILL 408 (557)
Q Consensus 335 ~M~~~R~~~~~v~lpdG~I~vvGG~~~g~-~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~-----~~~~~R~yhs~a~ll 408 (557)
.||.+|..++++++ +++|||+||..... .+.........++++|||+++ +|+.+. +++..|..|+++++.
T Consensus 237 ~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~~~~~~~~~pr~~~~~~~~~v~ 312 (341)
T PLN02153 237 AKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKLGECGEPAMPRGWTAYTTATVY 312 (341)
T ss_pred CCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEEEcCcc---EEEeccCCCCCCCCCccccccccccC
Confidence 37889998887665 99999999963110 000000111237899999999 999875 566667666667665
Q ss_pred cCCcEEEecCCCCc
Q 041651 409 TDGRVLIGGSNPHI 422 (557)
Q Consensus 409 pdG~V~v~GG~~~~ 422 (557)
-+++||+.||....
T Consensus 313 ~~~~~~~~gG~~~~ 326 (341)
T PLN02153 313 GKNGLLMHGGKLPT 326 (341)
T ss_pred CcceEEEEcCcCCC
Confidence 56799999997554
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=268.13 Aligned_cols=218 Identities=17% Similarity=0.304 Sum_probs=172.6
Q ss_pred EECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCC
Q 041651 102 YDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYND--GDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDG 179 (557)
Q Consensus 102 yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~--g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG 179 (557)
|++.+++|..+. ..| .++..++.||++||... ..+++++|||. +++|..+++ |+.+|.+++++++ ||
T Consensus 251 ~~~~~~~~~~~~----~~~--~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~---~~~W~~~~~-m~~~r~~~~~v~~-~~ 319 (480)
T PHA02790 251 YPMNMDQIIDIF----HMC--TSTHVGEVVYLIGGWMNNEIHNNAIAVNYI---SNNWIPIPP-MNSPRLYASGVPA-NN 319 (480)
T ss_pred cCCcccceeecc----CCc--ceEEECCEEEEEcCCCCCCcCCeEEEEECC---CCEEEECCC-CCchhhcceEEEE-CC
Confidence 456666776532 122 23336889999999753 24689999999 899999996 9999999999888 99
Q ss_pred cEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEec
Q 041651 180 RIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYP 259 (557)
Q Consensus 180 ~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p 259 (557)
+||++||.+.. . ++++|||.+|+|. .+|
T Consensus 320 ~iYviGG~~~~------------------------~---------------------------sve~ydp~~n~W~-~~~ 347 (480)
T PHA02790 320 KLYVVGGLPNP------------------------T---------------------------SVERWFHGDAAWV-NMP 347 (480)
T ss_pred EEEEECCcCCC------------------------C---------------------------ceEEEECCCCeEE-ECC
Confidence 99999996321 0 1358999999998 589
Q ss_pred CCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCC
Q 041651 260 EIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPL 338 (557)
Q Consensus 260 ~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~ 338 (557)
+||. +|..+ +++++ +++||++||.+. ..+++++|||.. ++|+.. +|+.
T Consensus 348 ~l~~--~r~~~--~~~~~------------~g~IYviGG~~~-------------~~~~ve~ydp~~--~~W~~~~~m~~ 396 (480)
T PHA02790 348 SLLK--PRCNP--AVASI------------NNVIYVIGGHSE-------------TDTTTEYLLPNH--DQWQFGPSTYY 396 (480)
T ss_pred CCCC--CCccc--EEEEE------------CCEEEEecCcCC-------------CCccEEEEeCCC--CEEEeCCCCCC
Confidence 8875 57654 44554 899999999752 125688899875 799998 9999
Q ss_pred CceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEecC
Q 041651 339 PRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGS 418 (557)
Q Consensus 339 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG 418 (557)
+|..++++++ +|+|||+||. +|+|||+++ +|+.+++|+.+|..|+++++ +|+||++||
T Consensus 397 ~r~~~~~~~~-~~~IYv~GG~----------------~e~ydp~~~---~W~~~~~m~~~r~~~~~~v~--~~~IYviGG 454 (480)
T PHA02790 397 PHYKSCALVF-GRRLFLVGRN----------------AEFYCESSN---TWTLIDDPIYPRDNPELIIV--DNKLLLIGG 454 (480)
T ss_pred ccccceEEEE-CCEEEEECCc----------------eEEecCCCC---cEeEcCCCCCCccccEEEEE--CCEEEEECC
Confidence 9999987766 9999999972 489999999 99999999999999988877 999999999
Q ss_pred CCCcccccccccCCCcceEEEEcCCC
Q 041651 419 NPHIYYNFTNVVYPTDLSLEAYSPPY 444 (557)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~vE~y~Ppy 444 (557)
..... + ..++|+|+|..
T Consensus 455 ~~~~~-------~--~~~ve~Yd~~~ 471 (480)
T PHA02790 455 FYRGS-------Y--IDTIEVYNNRT 471 (480)
T ss_pred cCCCc-------c--cceEEEEECCC
Confidence 75321 1 24799999975
No 11
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=1.1e-27 Score=252.99 Aligned_cols=279 Identities=15% Similarity=0.142 Sum_probs=183.3
Q ss_pred EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc-cccCcceEEEecCCcEEEEcCc
Q 041651 109 YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQILPDGRIIIIGGR 187 (557)
Q Consensus 109 w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~vyvvGG~ 187 (557)
++.++.++..+-...++..+++|||+||.. .+.+.+||..+. +++|.++++ |+ .+|..++++++ +++|||+||.
T Consensus 19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~--~~~~~~~d~~~~-~~~W~~l~~-~p~~~r~~~~~v~~-~~~IYV~GG~ 93 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSA--GTSWYKLDLNAP-SKGWTKIAA-FPGGPREQAVAAFI-DGKLYVFGGI 93 (376)
T ss_pred cccCCCCCcCccCCeEEEECCEEEEEeCCC--CCeEEEEECCCC-CCCeEECCc-CCCCCcccceEEEE-CCEEEEEcCC
Confidence 344444443322223445699999999974 356889998521 478999986 87 58988888888 8999999997
Q ss_pred CC----------CceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEe-eCCcEEEEEcC-------------
Q 041651 188 RQ----------FNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLL-PDGNLFIFANT------------- 242 (557)
Q Consensus 188 ~~----------~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~-~~G~ifv~gg~------------- 242 (557)
.. .+++.| |.. ++|..++.+.. ...+.++.++ .+++||++||.
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~------n~W~~~~~~~p------~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~ 161 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKT------NSWQKLDTRSP------VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCC------CEEEeCCCCCC------CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhh
Confidence 53 246788 763 47886553211 1122344444 79999999983
Q ss_pred ----------------------------ceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEE
Q 041651 243 ----------------------------RSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIM 294 (557)
Q Consensus 243 ----------------------------~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~ 294 (557)
+.++|||.+++|. .++++|.. +|..+ ++++. +++||
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~-~~~~~--a~v~~------------~~~iY 225 (376)
T PRK14131 162 AAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK-NAGESPFL-GTAGS--AVVIK------------GNKLW 225 (376)
T ss_pred hcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeee-ECCcCCCC-CCCcc--eEEEE------------CCEEE
Confidence 3689999999998 48877742 34332 33332 89999
Q ss_pred EEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCcee-------eeEEEcCCCeEEEEcCcCCCCC--
Q 041651 295 ICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVM-------GDMILLPNGDVIIINGAQLGTA-- 364 (557)
Q Consensus 295 v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~-------~~~v~lpdG~I~vvGG~~~g~~-- 364 (557)
++||...... .+..+..+++....++|+.. +|+.+|.. +.++++.+|+|||+||......
T Consensus 226 v~GG~~~~~~----------~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~ 295 (376)
T PRK14131 226 LINGEIKPGL----------RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARE 295 (376)
T ss_pred EEeeeECCCc----------CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChh
Confidence 9999642111 12223333332234799988 99887742 1112345999999999752110
Q ss_pred ----C--cc-cCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEecCCCCcccccccccCCCcceE
Q 041651 365 ----G--WE-LARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSL 437 (557)
Q Consensus 365 ----g--~~-~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~~~~~~~~~~~~~~~~~v 437 (557)
+ +. .....+.++|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||+||....+. ...+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~~--------~~~~v 362 (376)
T PRK14131 296 NYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGGK--------AVSDV 362 (376)
T ss_pred hhhcCCcccccCCcceeehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEcCCCCCCc--------EeeeE
Confidence 0 00 00112346899999999 99999999999999976555 999999999754321 13478
Q ss_pred EEEcCC
Q 041651 438 EAYSPP 443 (557)
Q Consensus 438 E~y~Pp 443 (557)
++|.|.
T Consensus 363 ~~~~~~ 368 (376)
T PRK14131 363 TLLSWD 368 (376)
T ss_pred EEEEEc
Confidence 888775
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=258.58 Aligned_cols=208 Identities=15% Similarity=0.240 Sum_probs=163.8
Q ss_pred eeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcC
Q 041651 57 LHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGG 136 (557)
Q Consensus 57 ~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG 136 (557)
..+++||++||.+.. . ....+++|||.+++|..++.++..++..+++..||+||++||
T Consensus 269 ~~~~~lyviGG~~~~--------~--------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG 326 (480)
T PHA02790 269 HVGEVVYLIGGWMNN--------E--------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGG 326 (480)
T ss_pred EECCEEEEEcCCCCC--------C--------------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECC
Confidence 368899999986411 0 123588999999999999988777766666677999999999
Q ss_pred CCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccc
Q 041651 137 YNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLET 216 (557)
Q Consensus 137 ~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t 216 (557)
.. +.+++++|||. +++|..+++ |+.+|..++++++ +|+|||+||.+... .
T Consensus 327 ~~-~~~sve~ydp~---~n~W~~~~~-l~~~r~~~~~~~~-~g~IYviGG~~~~~-----------------------~- 376 (480)
T PHA02790 327 LP-NPTSVERWFHG---DAAWVNMPS-LLKPRCNPAVASI-NNVIYVIGGHSETD-----------------------T- 376 (480)
T ss_pred cC-CCCceEEEECC---CCeEEECCC-CCCCCcccEEEEE-CCEEEEecCcCCCC-----------------------c-
Confidence 74 34789999999 899999986 9999999999988 99999999964210 0
Q ss_pred cccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEE
Q 041651 217 RDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMIC 296 (557)
Q Consensus 217 ~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~ 296 (557)
.+++|||++++|. .+|+|+. +|..+ +++++ +++||++
T Consensus 377 --------------------------~ve~ydp~~~~W~-~~~~m~~--~r~~~--~~~~~------------~~~IYv~ 413 (480)
T PHA02790 377 --------------------------TTEYLLPNHDQWQ-FGPSTYY--PHYKS--CALVF------------GRRLFLV 413 (480)
T ss_pred --------------------------cEEEEeCCCCEEE-eCCCCCC--ccccc--eEEEE------------CCEEEEE
Confidence 1458999999998 5888865 57654 44454 8999999
Q ss_pred cCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccc
Q 041651 297 GGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTR 375 (557)
Q Consensus 297 GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~ 375 (557)
||. +++||+.. ++|+.. +|+.+|..++++++ +|+|||+||.+.+. .+.+
T Consensus 414 GG~-------------------~e~ydp~~--~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~~--------~~~~ 463 (480)
T PHA02790 414 GRN-------------------AEFYCESS--NTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRGS--------YIDT 463 (480)
T ss_pred CCc-------------------eEEecCCC--CcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCCc--------ccce
Confidence 983 23445443 699998 99999999988776 99999999976211 1347
Q ss_pred cEEEcCCCCCCCceEec
Q 041651 376 PIIYRPSEQTSRRFSVM 392 (557)
Q Consensus 376 ~e~YDP~t~~g~~W~~~ 392 (557)
+|+|||.++ +|+.+
T Consensus 464 ve~Yd~~~~---~W~~~ 477 (480)
T PHA02790 464 IEVYNNRTY---SWNIW 477 (480)
T ss_pred EEEEECCCC---eEEec
Confidence 999999999 99865
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=2.5e-26 Score=237.92 Aligned_cols=273 Identities=16% Similarity=0.166 Sum_probs=183.8
Q ss_pred ccceeEEEEeeCCeEEEEeecccCCCcccCC-CCccccCCCCccccccCcceEEEEE-CCCC-cEEECccCCCcccccCe
Q 041651 48 GISAMHMQLLHDNRVIMFDRTDFGQSNLSLS-SGRCRFDPYDTVLHTDCTAHSILYD-VATN-AYRPLMVQTDTWCSSGS 124 (557)
Q Consensus 48 ~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~yD-p~t~-~w~~l~~~~~~~c~~~~ 124 (557)
++.++.+++ .++++|++||.+... ..+. .|+.. +...+.+|+ +..+ +|+.++.++..++.+++
T Consensus 3 ~~~g~~~~~-~~~~l~v~GG~~~~~--~~~~~~g~~~-----------~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~ 68 (323)
T TIGR03548 3 GVAGCYAGI-IGDYILVAGGCNFPE--DPLAEGGKKK-----------NYKGIYIAKDENSNLKWVKDGQLPYEAAYGAS 68 (323)
T ss_pred ceeeEeeeE-ECCEEEEeeccCCCC--CchhhCCcEE-----------eeeeeEEEecCCCceeEEEcccCCccccceEE
Confidence 344444444 688999999975311 1111 12111 233455554 4433 79999887766655556
Q ss_pred ecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCce----ecCCcccccccCcceEEEecCCcEEEEcCcCCCceeEecCC
Q 041651 125 VLPNGTLVQSGGYNDG--DHVVRTFTPCDDDQCDW----IELPQHLSERRWYATNQILPDGRIIIIGGRRQFNYEFYPKS 198 (557)
Q Consensus 125 ~l~dG~i~v~GG~~~g--~~~v~~ydp~~~~t~~W----~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~ 198 (557)
+..+++||++||.... .+++++||+. +++| ..+++ |+.+|..++++++ +++|||+||.....
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~---~~~w~~~~~~~~~-lp~~~~~~~~~~~-~~~iYv~GG~~~~~------- 136 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLD---ESKEELICETIGN-LPFTFENGSACYK-DGTLYVGGGNRNGK------- 136 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEc---CCceeeeeeEcCC-CCcCccCceEEEE-CCEEEEEeCcCCCc-------
Confidence 6669999999997532 4689999998 6776 77775 9999999988887 89999999963210
Q ss_pred CCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEee
Q 041651 199 DEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLL 278 (557)
Q Consensus 199 ~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vll 278 (557)
.. ++.++||+++++|. .+++||.. +|..+ .++++
T Consensus 137 ----------------~~-------------------------~~v~~yd~~~~~W~-~~~~~p~~-~r~~~--~~~~~- 170 (323)
T TIGR03548 137 ----------------PS-------------------------NKSYLFNLETQEWF-ELPDFPGE-PRVQP--VCVKL- 170 (323)
T ss_pred ----------------cC-------------------------ceEEEEcCCCCCee-ECCCCCCC-CCCcc--eEEEE-
Confidence 00 02458999999998 58877743 46543 23333
Q ss_pred cCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCC---CCce--eeeEEEcCCCe
Q 041651 279 PLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMP---LPRV--MGDMILLPNGD 352 (557)
Q Consensus 279 p~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~---~~R~--~~~~v~lpdG~ 352 (557)
+++|||+||.+... ..++++||+.. ++|+.. +|+ .+|. .+.++++.+++
T Consensus 171 -----------~~~iYv~GG~~~~~------------~~~~~~yd~~~--~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 171 -----------QNELYVFGGGSNIA------------YTDGYKYSPKK--NQWQKVADPTTDSEPISLLGAASIKINESL 225 (323)
T ss_pred -----------CCEEEEEcCCCCcc------------ccceEEEecCC--CeeEECCCCCCCCCceeccceeEEEECCCE
Confidence 89999999975211 23467888876 699987 764 3433 34444556899
Q ss_pred EEEEcCcCCCCC-----Ccc-------------------cCCCCccccEEEcCCCCCCCceEecCCCC-Cccccccccee
Q 041651 353 VIIINGAQLGTA-----GWE-------------------LARGPMTRPIIYRPSEQTSRRFSVMEPST-RPRMYHSSAIL 407 (557)
Q Consensus 353 I~vvGG~~~g~~-----g~~-------------------~~~~~~~~~e~YDP~t~~g~~W~~~~~~~-~~R~yhs~a~l 407 (557)
|||+||.+.... .+. ....-..++|+|||.++ +|+.+++++ .+|..|+.+++
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~ 302 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLT 302 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEE
Confidence 999999762100 000 00000236999999999 999999887 58988877666
Q ss_pred ccCCcEEEecCCCCc
Q 041651 408 LTDGRVLIGGSNPHI 422 (557)
Q Consensus 408 lpdG~V~v~GG~~~~ 422 (557)
|++||++||....
T Consensus 303 --~~~iyv~GG~~~p 315 (323)
T TIGR03548 303 --GNNIFSINGELKP 315 (323)
T ss_pred --CCEEEEEeccccC
Confidence 9999999997544
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=255.86 Aligned_cols=245 Identities=19% Similarity=0.288 Sum_probs=188.4
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCceecCCcccccccCcceEE
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDG---DHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQ 174 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g---~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~ 174 (557)
.+..|++.+++|..+...+...|. +++..+++||++||.... .+++++||+. +++|..+++ |+.+|.+++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~---~~~W~~~~~-~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCF-GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK---TKSWNKVPE-LIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCccccccc-eEEEECCEEEEECCCcCCCCeeccEEEEeCC---CCeeeECCC-CCcccccceEE
Confidence 356789989999998765544553 455679999999998532 3578999999 899999986 99999999998
Q ss_pred EecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeE
Q 041651 175 ILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKV 254 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W 254 (557)
++ +|+||++||.+... .. +++++||+.+++|
T Consensus 340 ~~-~~~lyv~GG~~~~~-----------------------~~-------------------------~~v~~yd~~~~~W 370 (534)
T PHA03098 340 VF-NNRIYVIGGIYNSI-----------------------SL-------------------------NTVESWKPGESKW 370 (534)
T ss_pred EE-CCEEEEEeCCCCCE-----------------------ec-------------------------ceEEEEcCCCCce
Confidence 88 89999999975311 00 0146899999999
Q ss_pred EEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee
Q 041651 255 LKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME 334 (557)
Q Consensus 255 ~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~ 334 (557)
. .+++||. +|..+ +++++ +++||++||...+.. .++++++||+.. ++|+..
T Consensus 371 ~-~~~~lp~--~r~~~--~~~~~------------~~~iYv~GG~~~~~~----------~~~~v~~yd~~t--~~W~~~ 421 (534)
T PHA03098 371 R-EEPPLIF--PRYNP--CVVNV------------NNLIYVIGGISKNDE----------LLKTVECFSLNT--NKWSKG 421 (534)
T ss_pred e-eCCCcCc--CCccc--eEEEE------------CCEEEEECCcCCCCc----------ccceEEEEeCCC--Ceeeec
Confidence 8 5888875 57654 33433 899999999653211 257889999875 699998
Q ss_pred -cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcE
Q 041651 335 -EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRV 413 (557)
Q Consensus 335 -~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V 413 (557)
+||.+|..++++++ +++|||+||..... .......+++|||.++ +|+.+++++.+|..|+.+++ +|+|
T Consensus 422 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-----~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~i 490 (534)
T PHA03098 422 SPLPISHYGGCAIYH-DGKIYVIGGISYID-----NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKI 490 (534)
T ss_pred CCCCccccCceEEEE-CCEEEEECCccCCC-----CCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEE
Confidence 99999999887765 99999999975211 1111335899999999 99999999999999977665 9999
Q ss_pred EEecCCCCcccccccccCCCcceEEEEcCCCC
Q 041651 414 LIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYL 445 (557)
Q Consensus 414 ~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl 445 (557)
|+.||.....+ ..++|+|+|..-
T Consensus 491 yv~GG~~~~~~---------~~~v~~yd~~~~ 513 (534)
T PHA03098 491 YVVGGDKYEYY---------INEIEVYDDKTN 513 (534)
T ss_pred EEEcCCcCCcc---------cceeEEEeCCCC
Confidence 99999754321 237999999864
No 15
>PLN02193 nitrile-specifier protein
Probab=99.94 E-value=3.9e-25 Score=239.82 Aligned_cols=279 Identities=13% Similarity=0.168 Sum_probs=193.1
Q ss_pred CCceEEccC---CcccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECc
Q 041651 37 QGEWNLLHE---SIGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLM 113 (557)
Q Consensus 37 ~g~W~~~~~---~~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~ 113 (557)
.++|..+.. .+..+..|+++..+++||++||.... +.. ....+++||+.+++|+.++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~-------~~~-------------~~~~v~~yD~~~~~W~~~~ 209 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTP-------NQP-------------IDKHLYVFDLETRTWSISP 209 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCC-------CCC-------------eeCcEEEEECCCCEEEeCC
Confidence 389998774 24466789888889999999996311 010 1134889999999999876
Q ss_pred cC---CCccc-ccCeecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCceecCCccc---ccccCcceEEEecCCcEEEE
Q 041651 114 VQ---TDTWC-SSGSVLPNGTLVQSGGYND--GDHVVRTFTPCDDDQCDWIELPQHL---SERRWYATNQILPDGRIIII 184 (557)
Q Consensus 114 ~~---~~~~c-~~~~~l~dG~i~v~GG~~~--g~~~v~~ydp~~~~t~~W~~~~~~m---~~~R~y~s~~~L~dG~vyvv 184 (557)
.. +...| ...++..+++|||+||... ..+++++||+. +++|+++++ | +.+|.+|+++++ +++|||+
T Consensus 210 ~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~---t~~W~~l~~-~~~~P~~R~~h~~~~~-~~~iYv~ 284 (470)
T PLN02193 210 ATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT---TNEWKLLTP-VEEGPTPRSFHSMAAD-EENVYVF 284 (470)
T ss_pred CCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC---CCEEEEcCc-CCCCCCCccceEEEEE-CCEEEEE
Confidence 43 22223 3345567999999999753 24789999999 899999875 7 789999988877 8999999
Q ss_pred cCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCC-C
Q 041651 185 GGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIP-G 263 (557)
Q Consensus 185 GG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp-~ 263 (557)
||.+... . + . +.++||+.+++|.. +++.. +
T Consensus 285 GG~~~~~---------------~-----~-~---------------------------~~~~yd~~t~~W~~-~~~~~~~ 315 (470)
T PLN02193 285 GGVSATA---------------R-----L-K---------------------------TLDSYNIVDKKWFH-CSTPGDS 315 (470)
T ss_pred CCCCCCC---------------C-----c-c---------------------------eEEEEECCCCEEEe-CCCCCCC
Confidence 9975311 0 0 0 13589999999984 65311 1
Q ss_pred CCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-c---CCCC
Q 041651 264 ADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-E---MPLP 339 (557)
Q Consensus 264 ~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~---M~~~ 339 (557)
..+|..+ +++++ +++||++||.+. . ..+.+++||+.. ++|+.. + +|.+
T Consensus 316 ~~~R~~~--~~~~~------------~gkiyviGG~~g-~-----------~~~dv~~yD~~t--~~W~~~~~~g~~P~~ 367 (470)
T PLN02193 316 FSIRGGA--GLEVV------------QGKVWVVYGFNG-C-----------EVDDVHYYDPVQ--DKWTQVETFGVRPSE 367 (470)
T ss_pred CCCCCCc--EEEEE------------CCcEEEEECCCC-C-----------ccCceEEEECCC--CEEEEeccCCCCCCC
Confidence 1145543 33333 899999999752 1 146788899875 689976 4 4889
Q ss_pred ceeeeEEEcCCCeEEEEcCcCCCC-CCcccCCCCccccEEEcCCCCCCCceEecCCC------CCcccccccce--eccC
Q 041651 340 RVMGDMILLPNGDVIIINGAQLGT-AGWELARGPMTRPIIYRPSEQTSRRFSVMEPS------TRPRMYHSSAI--LLTD 410 (557)
Q Consensus 340 R~~~~~v~lpdG~I~vvGG~~~g~-~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~------~~~R~yhs~a~--llpd 410 (557)
|..++++++ +++|||+||..... ...........++++|||.++ +|+.+..+ +.+|..|+.+. +..+
T Consensus 368 R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~ 443 (470)
T PLN02193 368 RSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL---QWERLDKFGEEEETPSSRGWTASTTGTIDGK 443 (470)
T ss_pred cceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEcCcC---EEEEcccCCCCCCCCCCCccccceeeEEcCC
Confidence 999887766 99999999975210 000000111236899999999 99988643 57788886543 3223
Q ss_pred CcEEEecCCCC
Q 041651 411 GRVLIGGSNPH 421 (557)
Q Consensus 411 G~V~v~GG~~~ 421 (557)
.++++.||...
T Consensus 444 ~~~~~fGG~~~ 454 (470)
T PLN02193 444 KGLVMHGGKAP 454 (470)
T ss_pred ceEEEEcCCCC
Confidence 34999999753
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=1e-25 Score=248.98 Aligned_cols=254 Identities=14% Similarity=0.212 Sum_probs=190.0
Q ss_pred CCCCCCCCceEEccCCcccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEE
Q 041651 31 PPYAGSQGEWNLLHESIGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYR 110 (557)
Q Consensus 31 ~~~~~~~g~W~~~~~~~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~ 110 (557)
..|+....+|..+... +....|++++.+++||++||.... +. ....+.+||+.+++|+
T Consensus 267 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lyv~GG~~~~--------~~-------------~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 267 ITNYSPLSEINTIIDI-HYVYCFGSVVLNNVIYFIGGMNKN--------NL-------------SVNSVVSYDTKTKSWN 324 (534)
T ss_pred eecchhhhhcccccCc-cccccceEEEECCEEEEECCCcCC--------CC-------------eeccEEEEeCCCCeee
Confidence 3567777889887643 344556788889999999997421 11 1235789999999999
Q ss_pred ECccCCCcccccCeecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcC
Q 041651 111 PLMVQTDTWCSSGSVLPNGTLVQSGGYNDG--DHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRR 188 (557)
Q Consensus 111 ~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g--~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~ 188 (557)
.++.++..++..+++..+|+||++||.... .+++++|||. +++|+..++ |+.+|..++++++ +|+|||+||..
T Consensus 325 ~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~-lp~~r~~~~~~~~-~~~iYv~GG~~ 399 (534)
T PHA03098 325 KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPG---ESKWREEPP-LIFPRYNPCVVNV-NNLIYVIGGIS 399 (534)
T ss_pred ECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCC---CCceeeCCC-cCcCCccceEEEE-CCEEEEECCcC
Confidence 998877666656666779999999998532 4689999999 899999986 9999999988887 89999999964
Q ss_pred CCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCc
Q 041651 189 QFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRN 268 (557)
Q Consensus 189 ~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~ 268 (557)
... . .+ ++.++||+.+++|. .++++|. +|.
T Consensus 400 ~~~--------------~-----~~----------------------------~~v~~yd~~t~~W~-~~~~~p~--~r~ 429 (534)
T PHA03098 400 KND--------------E-----LL----------------------------KTVECFSLNTNKWS-KGSPLPI--SHY 429 (534)
T ss_pred CCC--------------c-----cc----------------------------ceEEEEeCCCCeee-ecCCCCc--ccc
Confidence 311 0 00 02468999999998 5887775 465
Q ss_pred cCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEE
Q 041651 269 YPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMIL 347 (557)
Q Consensus 269 ~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~ 347 (557)
.+ ++++. +++||++||....... ...+.+++||+.. ++|+.. +|+.+|..+++++
T Consensus 430 ~~--~~~~~------------~~~iyv~GG~~~~~~~--------~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~ 485 (534)
T PHA03098 430 GG--CAIYH------------DGKIYVIGGISYIDNI--------KVYNIVESYNPVT--NKWTELSSLNFPRINASLCI 485 (534)
T ss_pred Cc--eEEEE------------CCEEEEECCccCCCCC--------cccceEEEecCCC--CceeeCCCCCcccccceEEE
Confidence 43 33333 8999999997521100 1234588999875 799998 8999999888777
Q ss_pred cCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCC
Q 041651 348 LPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTR 397 (557)
Q Consensus 348 lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~ 397 (557)
+ +|+|||+||..... ...++|+|||+++ +|+.+..++.
T Consensus 486 ~-~~~iyv~GG~~~~~--------~~~~v~~yd~~~~---~W~~~~~~p~ 523 (534)
T PHA03098 486 F-NNKIYVVGGDKYEY--------YINEIEVYDDKTN---TWTLFCKFPK 523 (534)
T ss_pred E-CCEEEEEcCCcCCc--------ccceeEEEeCCCC---EEEecCCCcc
Confidence 6 99999999976211 1347899999999 9998877654
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=4.7e-25 Score=232.99 Aligned_cols=283 Identities=15% Similarity=0.152 Sum_probs=188.6
Q ss_pred eEEccCCcccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECC--CCcEEECccCC-
Q 041651 40 WNLLHESIGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVA--TNAYRPLMVQT- 116 (557)
Q Consensus 40 W~~~~~~~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~--t~~w~~l~~~~- 116 (557)
++.+++++..+..+++++.+++||++||.. + .....||+. +++|+.++.++
T Consensus 19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~----------~----------------~~~~~~d~~~~~~~W~~l~~~p~ 72 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSA----------G----------------TSWYKLDLNAPSKGWTKIAAFPG 72 (376)
T ss_pred cccCCCCCcCccCCeEEEECCEEEEEeCCC----------C----------------CeEEEEECCCCCCCeEECCcCCC
Confidence 555555442223345666799999998752 1 125678876 57899998764
Q ss_pred CcccccCeecCCCcEEEEcCCCC----C----CCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcC
Q 041651 117 DTWCSSGSVLPNGTLVQSGGYND----G----DHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRR 188 (557)
Q Consensus 117 ~~~c~~~~~l~dG~i~v~GG~~~----g----~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~ 188 (557)
..++...++..+++|||+||... + .+++++|||. +++|+.++..++.+|..++++++.|++|||+||.+
T Consensus 73 ~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~---~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 73 GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK---TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC---CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 35555556667999999999753 1 3679999999 89999987524666777777764599999999975
Q ss_pred C--------------------------------------CceeEe-cCCCCCCCCCceeeecccccccccccCCccceEE
Q 041651 189 Q--------------------------------------FNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVH 229 (557)
Q Consensus 189 ~--------------------------------------~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~ 229 (557)
. ..+++| |.+ ++|..++.+... ....++.
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t------~~W~~~~~~p~~------~~~~~a~ 217 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPST------NQWKNAGESPFL------GTAGSAV 217 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCC------CeeeECCcCCCC------CCCcceE
Confidence 2 347889 874 478765433211 1123556
Q ss_pred EeeCCcEEEEEcCc------e----EEEeCCCCeEEEEecCCCCCCCCccCC----CC--ceEeecCcCCCCCcccccEE
Q 041651 230 LLPDGNLFIFANTR------S----ILFDYKQNKVLKEYPEIPGADPRNYPS----TG--SSVLLPLDERNGSTSVQAEI 293 (557)
Q Consensus 230 ~~~~G~ifv~gg~~------~----~~yDp~t~~W~~~~p~lp~~~~r~~~~----~g--~~vllp~~~~~~~~~~~g~I 293 (557)
+..+++||++||.. . ..||+++++|. .+++||. +|..+. .+ ++++ +++|
T Consensus 218 v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~--~~~~~~~~~~~~~~a~~~------------~~~i 282 (376)
T PRK14131 218 VIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ-KLPDLPP--APGGSSQEGVAGAFAGYS------------NGVL 282 (376)
T ss_pred EEECCEEEEEeeeECCCcCChhheEEEecCCCccee-ecCCCCC--CCcCCcCCccceEeceeE------------CCEE
Confidence 77799999999841 2 24588999998 5888875 342110 11 2333 8999
Q ss_pred EEEcCCCCcccc-ccc-ccccc----ccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCc
Q 041651 294 MICGGAQNASFA-LAT-QGVFI----RAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGW 366 (557)
Q Consensus 294 ~v~GG~~~~~~~-~~~-~~~~~----pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~ 366 (557)
||+||.+..... ... ...+. ....++|+||+.. ++|+.. +||.+|..+.++++ +|+|||+||...+.
T Consensus 283 yv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~~~lp~~r~~~~av~~-~~~iyv~GG~~~~~--- 356 (376)
T PRK14131 283 LVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN--GKWQKVGELPQGLAYGVSVSW-NNGVLLIGGETAGG--- 356 (376)
T ss_pred EEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC--CcccccCcCCCCccceEEEEe-CCEEEEEcCCCCCC---
Confidence 999997521100 000 00010 0123578899875 699988 99999999876665 99999999975311
Q ss_pred ccCCCCccccEEEcCCCCCCCceEe
Q 041651 367 ELARGPMTRPIIYRPSEQTSRRFSV 391 (557)
Q Consensus 367 ~~~~~~~~~~e~YDP~t~~g~~W~~ 391 (557)
..+.++++|+++.+ .++.
T Consensus 357 ----~~~~~v~~~~~~~~---~~~~ 374 (376)
T PRK14131 357 ----KAVSDVTLLSWDGK---KLTV 374 (376)
T ss_pred ----cEeeeEEEEEEcCC---EEEE
Confidence 22457999999887 7654
No 18
>PLN02153 epithiospecifier protein
Probab=99.92 E-value=1.8e-23 Score=218.17 Aligned_cols=258 Identities=14% Similarity=0.185 Sum_probs=171.8
Q ss_pred CCCCcEEECcc----CCCcccccCeecCCCcEEEEcCCCCC----CCeEEEEcCCCCCCCceecCCcccc-cccC---cc
Q 041651 104 VATNAYRPLMV----QTDTWCSSGSVLPNGTLVQSGGYNDG----DHVVRTFTPCDDDQCDWIELPQHLS-ERRW---YA 171 (557)
Q Consensus 104 p~t~~w~~l~~----~~~~~c~~~~~l~dG~i~v~GG~~~g----~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~---y~ 171 (557)
+...+|+.+.. .+..++...++..+++|||+||.... .+.+++||+. +++|+.++. |. .+|. .+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~---~~~W~~~~~-~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN---THTWSIAPA-NGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC---CCEEEEcCc-cCCCCCCccCce
Confidence 35667988875 34445555556668999999997421 3579999999 899999875 53 4543 46
Q ss_pred eEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCC
Q 041651 172 TNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQ 251 (557)
Q Consensus 172 s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t 251 (557)
+++++ +++|||+||.+... . + ++.++||+++
T Consensus 80 ~~~~~-~~~iyv~GG~~~~~---------------~-----~----------------------------~~v~~yd~~t 110 (341)
T PLN02153 80 RMVAV-GTKLYIFGGRDEKR---------------E-----F----------------------------SDFYSYDTVK 110 (341)
T ss_pred EEEEE-CCEEEEECCCCCCC---------------c-----c----------------------------CcEEEEECCC
Confidence 66777 89999999964311 0 0 0145899999
Q ss_pred CeEEEEecCCCC---CCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCC
Q 041651 252 NKVLKEYPEIPG---ADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHAN 328 (557)
Q Consensus 252 ~~W~~~~p~lp~---~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~ 328 (557)
++|. .+++|+. ..+|..+ +++++ +++|||+||.+....... ....+++++||+..
T Consensus 111 ~~W~-~~~~~~~~~~p~~R~~~--~~~~~------------~~~iyv~GG~~~~~~~~~-----~~~~~~v~~yd~~~-- 168 (341)
T PLN02153 111 NEWT-FLTKLDEEGGPEARTFH--SMASD------------ENHVYVFGGVSKGGLMKT-----PERFRTIEAYNIAD-- 168 (341)
T ss_pred CEEE-EeccCCCCCCCCCceee--EEEEE------------CCEEEEECCccCCCccCC-----CcccceEEEEECCC--
Confidence 9998 4776621 1256654 33443 899999999763211100 01246788999875
Q ss_pred Ccceee-cCC---CCceeeeEEEcCCCeEEEEcCcCCCC--CCcccCCCCccccEEEcCCCCCCCceEecCC---CCCcc
Q 041651 329 PSWVME-EMP---LPRVMGDMILLPNGDVIIINGAQLGT--AGWELARGPMTRPIIYRPSEQTSRRFSVMEP---STRPR 399 (557)
Q Consensus 329 ~~W~~~-~M~---~~R~~~~~v~lpdG~I~vvGG~~~g~--~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~---~~~~R 399 (557)
++|+.. +|. .+|..++++++ +|+|||+||..... .|. .......+++|||.++ +|+.++. ++.+|
T Consensus 169 ~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~--~~~~~~~v~~yd~~~~---~W~~~~~~g~~P~~r 242 (341)
T PLN02153 169 GKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGK--SDYESNAVQFFDPASG---KWTEVETTGAKPSAR 242 (341)
T ss_pred CeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCc--cceecCceEEEEcCCC---cEEeccccCCCCCCc
Confidence 699986 553 78888877665 99999999964210 010 0111347999999999 9998864 67899
Q ss_pred cccccceeccCCcEEEecCCCCcccc-ccc-ccCCCcceEEEEcCCCCC
Q 041651 400 MYHSSAILLTDGRVLIGGSNPHIYYN-FTN-VVYPTDLSLEAYSPPYLS 446 (557)
Q Consensus 400 ~yhs~a~llpdG~V~v~GG~~~~~~~-~~~-~~~~~~~~vE~y~Ppyl~ 446 (557)
..|+++++ +++|||+||.....-. ..+ ..+ ...+++|+|...-
T Consensus 243 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~--~n~v~~~d~~~~~ 287 (341)
T PLN02153 243 SVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTL--SNEGYALDTETLV 287 (341)
T ss_pred ceeeeEEE--CCEEEEECcccCCccccccccccc--cccEEEEEcCccE
Confidence 99987666 9999999996421000 000 011 2368999998753
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.92 E-value=1.9e-23 Score=218.45 Aligned_cols=247 Identities=17% Similarity=0.255 Sum_probs=164.0
Q ss_pred CCCCCCC--CCCCceEEccCCc-ccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEEC
Q 041651 28 QVLPPYA--GSQGEWNLLHESI-GISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDV 104 (557)
Q Consensus 28 ~~~~~~~--~~~g~W~~~~~~~-~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp 104 (557)
..+..|| ...++|..+++++ ..+..|+++..+++||++||...... ++... ....+++|||
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~-----~~~~~-----------~~~~v~~Yd~ 92 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS-----EGSPQ-----------VFDDVYRYDP 92 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC-----CCcce-----------ecccEEEEEC
Confidence 3444555 3578999998775 35667777778999999999742110 01000 1346899999
Q ss_pred CCCcEEECccC-CC-cccccCeecCCCcEEEEcCCCCC------------------------------------CCeEEE
Q 041651 105 ATNAYRPLMVQ-TD-TWCSSGSVLPNGTLVQSGGYNDG------------------------------------DHVVRT 146 (557)
Q Consensus 105 ~t~~w~~l~~~-~~-~~c~~~~~l~dG~i~v~GG~~~g------------------------------------~~~v~~ 146 (557)
.+++|+.++.+ +. +++++++.+.+|+||++||.... .+++++
T Consensus 93 ~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (346)
T TIGR03547 93 KKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLS 172 (346)
T ss_pred CCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEE
Confidence 99999998742 22 23333333579999999997421 268999
Q ss_pred EcCCCCCCCceecCCccccc-ccCcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCcc
Q 041651 147 FTPCDDDQCDWIELPQHLSE-RRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLY 225 (557)
Q Consensus 147 ydp~~~~t~~W~~~~~~m~~-~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~y 225 (557)
|||. +++|+.+++ |+. +|..++++++ +|+|||+||...... .+.
T Consensus 173 YDp~---t~~W~~~~~-~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~----------------------~~~-------- 217 (346)
T TIGR03547 173 YDPS---TNQWRNLGE-NPFLGTAGSAIVHK-GNKLLLINGEIKPGL----------------------RTA-------- 217 (346)
T ss_pred EECC---CCceeECcc-CCCCcCCCceEEEE-CCEEEEEeeeeCCCc----------------------cch--------
Confidence 9999 999999986 986 6777777777 899999999642110 000
Q ss_pred ceEEEeeCCcEEEEEcCceE--EEeCCCCeEEEEecCCCCCCCCcc-CC--CC--ceEeecCcCCCCCcccccEEEEEcC
Q 041651 226 PFVHLLPDGNLFIFANTRSI--LFDYKQNKVLKEYPEIPGADPRNY-PS--TG--SSVLLPLDERNGSTSVQAEIMICGG 298 (557)
Q Consensus 226 p~~~~~~~G~ifv~gg~~~~--~yDp~t~~W~~~~p~lp~~~~r~~-~~--~g--~~vllp~~~~~~~~~~~g~I~v~GG 298 (557)
..+ .||+.+++|. .+++||. +|.. +. .+ ++++ +++|||+||
T Consensus 218 -----------------~~~~y~~~~~~~~W~-~~~~m~~--~r~~~~~~~~~~~a~~~------------~~~Iyv~GG 265 (346)
T TIGR03547 218 -----------------EVKQYLFTGGKLEWN-KLPPLPP--PKSSSQEGLAGAFAGIS------------NGVLLVAGG 265 (346)
T ss_pred -----------------heEEEEecCCCceee-ecCCCCC--CCCCccccccEEeeeEE------------CCEEEEeec
Confidence 011 3567888998 5888865 3421 10 11 2232 899999999
Q ss_pred CCCccccc--cccccc--c--ccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcC
Q 041651 299 AQNASFAL--ATQGVF--I--RAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQ 360 (557)
Q Consensus 299 ~~~~~~~~--~~~~~~--~--pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~ 360 (557)
.+...... .....| . ....++|+||+.. ++|+.. +||.+|..+.++++ +|+|||+||..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~~~lp~~~~~~~~~~~-~~~iyv~GG~~ 331 (346)
T TIGR03547 266 ANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN--GKWSKVGKLPQGLAYGVSVSW-NNGVLLIGGEN 331 (346)
T ss_pred CCCCCchhhhhcCCccccCCCCceeEeeEEEecC--CcccccCCCCCCceeeEEEEc-CCEEEEEeccC
Confidence 75210000 000011 0 0124689999975 699988 99999988876555 99999999976
No 20
>PLN02193 nitrile-specifier protein
Probab=99.92 E-value=6.2e-23 Score=222.67 Aligned_cols=251 Identities=15% Similarity=0.196 Sum_probs=176.2
Q ss_pred EEEEECCC----CcEEECccC---CCcccccCeecCCCcEEEEcCCCCC----CCeEEEEcCCCCCCCceecCCc--ccc
Q 041651 99 SILYDVAT----NAYRPLMVQ---TDTWCSSGSVLPNGTLVQSGGYNDG----DHVVRTFTPCDDDQCDWIELPQ--HLS 165 (557)
Q Consensus 99 ~~~yDp~t----~~w~~l~~~---~~~~c~~~~~l~dG~i~v~GG~~~g----~~~v~~ydp~~~~t~~W~~~~~--~m~ 165 (557)
+.++||.+ ++|..+... +..++...++..+++||++||.... .+.+++||+. +++|+..+. +++
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~---~~~W~~~~~~g~~P 215 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLE---TRTWSISPATGDVP 215 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECC---CCEEEeCCCCCCCC
Confidence 44557766 899988753 4456666677779999999997421 2568999999 899998753 133
Q ss_pred c-ccCcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCce
Q 041651 166 E-RRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRS 244 (557)
Q Consensus 166 ~-~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~ 244 (557)
. .|..++++++ +++|||+||.+... .. ++.
T Consensus 216 ~~~~~~~~~v~~-~~~lYvfGG~~~~~-----------------------~~-------------------------ndv 246 (470)
T PLN02193 216 HLSCLGVRMVSI-GSTLYVFGGRDASR-----------------------QY-------------------------NGF 246 (470)
T ss_pred CCcccceEEEEE-CCEEEEECCCCCCC-----------------------CC-------------------------ccE
Confidence 3 2446677777 89999999975310 00 024
Q ss_pred EEEeCCCCeEEEEecCCCC-CCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEE
Q 041651 245 ILFDYKQNKVLKEYPEIPG-ADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLV 323 (557)
Q Consensus 245 ~~yDp~t~~W~~~~p~lp~-~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d 323 (557)
++||+.+++|.+ +++++. ..+|..+ +++++ +++||++||.+... ..+.+++||
T Consensus 247 ~~yD~~t~~W~~-l~~~~~~P~~R~~h--~~~~~------------~~~iYv~GG~~~~~-----------~~~~~~~yd 300 (470)
T PLN02193 247 YSFDTTTNEWKL-LTPVEEGPTPRSFH--SMAAD------------EENVYVFGGVSATA-----------RLKTLDSYN 300 (470)
T ss_pred EEEECCCCEEEE-cCcCCCCCCCccce--EEEEE------------CCEEEEECCCCCCC-----------CcceEEEEE
Confidence 589999999984 776621 1257664 33333 89999999986321 245678888
Q ss_pred ecCCCCcceee----cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCC---C
Q 041651 324 VSHANPSWVME----EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPS---T 396 (557)
Q Consensus 324 ~~~~~~~W~~~----~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~---~ 396 (557)
+.. ++|+.. .|+.+|..+.++++ +|+||++||.. +. ....+++|||.++ +|+.++++ +
T Consensus 301 ~~t--~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~-g~--------~~~dv~~yD~~t~---~W~~~~~~g~~P 365 (470)
T PLN02193 301 IVD--KKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFN-GC--------EVDDVHYYDPVQD---KWTQVETFGVRP 365 (470)
T ss_pred CCC--CEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCC-CC--------ccCceEEEECCCC---EEEEeccCCCCC
Confidence 875 699875 37788998887765 99999999975 32 1347899999999 99998765 7
Q ss_pred CcccccccceeccCCcEEEecCCCCcccc-ccc-ccCCCcceEEEEcCCCCC
Q 041651 397 RPRMYHSSAILLTDGRVLIGGSNPHIYYN-FTN-VVYPTDLSLEAYSPPYLS 446 (557)
Q Consensus 397 ~~R~yhs~a~llpdG~V~v~GG~~~~~~~-~~~-~~~~~~~~vE~y~Ppyl~ 446 (557)
.+|..|+++++ +++|||+||....... ..+ ..+ ..++++|+|...-
T Consensus 366 ~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~--~ndv~~~D~~t~~ 413 (470)
T PLN02193 366 SERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQL--TDGTFALDTETLQ 413 (470)
T ss_pred CCcceeEEEEE--CCEEEEECCccCCccccccCccce--eccEEEEEcCcCE
Confidence 89999987766 9999999997431100 000 011 2368999998763
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.91 E-value=8.7e-23 Score=211.43 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=161.6
Q ss_pred ceEEccCCcccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcE----EECcc
Q 041651 39 EWNLLHESIGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAY----RPLMV 114 (557)
Q Consensus 39 ~W~~~~~~~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w----~~l~~ 114 (557)
+|..+.+++..++.|+++..+++||++||.+. .+ ....+++||+.+++| +.++.
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~---------~~-------------~~~~v~~~d~~~~~w~~~~~~~~~ 109 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNS---------SE-------------RFSSVYRITLDESKEELICETIGN 109 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCC---------CC-------------CceeEEEEEEcCCceeeeeeEcCC
Confidence 79998877666666766767999999998641 11 124588999999998 67777
Q ss_pred CCCcccccCeecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCceecCCcccc-cccCcceEEEecCCcEEEEcCcCCCc
Q 041651 115 QTDTWCSSGSVLPNGTLVQSGGYNDG--DHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQILPDGRIIIIGGRRQFN 191 (557)
Q Consensus 115 ~~~~~c~~~~~l~dG~i~v~GG~~~g--~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~vyvvGG~~~~~ 191 (557)
++..++..+++..+++|||+||..++ .+++++|||. +++|+++++ |+ .+|..++++++ +++|||+||.+...
T Consensus 110 lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~-~p~~~r~~~~~~~~-~~~iYv~GG~~~~~ 184 (323)
T TIGR03548 110 LPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE---TQEWFELPD-FPGEPRVQPVCVKL-QNELYVFGGGSNIA 184 (323)
T ss_pred CCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCC---CCCeeECCC-CCCCCCCcceEEEE-CCEEEEEcCCCCcc
Confidence 66666666666779999999997432 4789999999 899999986 87 47888877777 89999999964310
Q ss_pred eeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCCC-CCCccC
Q 041651 192 YEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPGA-DPRNYP 270 (557)
Q Consensus 192 ~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~-~~r~~~ 270 (557)
.. +.++|||++++|. .+++|+.. .+|...
T Consensus 185 ------------------------~~-------------------------~~~~yd~~~~~W~-~~~~~~~~~~p~~~~ 214 (323)
T TIGR03548 185 ------------------------YT-------------------------DGYKYSPKKNQWQ-KVADPTTDSEPISLL 214 (323)
T ss_pred ------------------------cc-------------------------ceEEEecCCCeeE-ECCCCCCCCCceecc
Confidence 00 1348999999998 47766321 133322
Q ss_pred CCCceEeecCcCCCCCcccccEEEEEcCCCCcccccccccccc---------------------cc-CCceEEEEecCCC
Q 041651 271 STGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFI---------------------RA-ISTCGRLVVSHAN 328 (557)
Q Consensus 271 ~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~---------------------pa-~~s~~~~d~~~~~ 328 (557)
...++++. +++||++||.+...+.+ ..+.++ +. .+++++||+..
T Consensus 215 ~~~~~~~~-----------~~~iyv~GG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~-- 280 (323)
T TIGR03548 215 GAASIKIN-----------ESLLLCIGGFNKDVYND-AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT-- 280 (323)
T ss_pred ceeEEEEC-----------CCEEEEECCcCHHHHHH-HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC--
Confidence 11122221 78999999986321100 000000 01 36799999986
Q ss_pred Ccceee-cCC-CCceeeeEEEcCCCeEEEEcCcC
Q 041651 329 PSWVME-EMP-LPRVMGDMILLPNGDVIIINGAQ 360 (557)
Q Consensus 329 ~~W~~~-~M~-~~R~~~~~v~lpdG~I~vvGG~~ 360 (557)
++|+.. +|+ .+|..++++++ +++||++||..
T Consensus 281 ~~W~~~~~~p~~~r~~~~~~~~-~~~iyv~GG~~ 313 (323)
T TIGR03548 281 GKWKSIGNSPFFARCGAALLLT-GNNIFSINGEL 313 (323)
T ss_pred CeeeEcccccccccCchheEEE-CCEEEEEeccc
Confidence 699987 787 58888877766 99999999964
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.79 E-value=9.6e-18 Score=160.22 Aligned_cols=283 Identities=17% Similarity=0.229 Sum_probs=190.1
Q ss_pred ceEEccCCcccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccC---
Q 041651 39 EWNLLHESIGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQ--- 115 (557)
Q Consensus 39 ~W~~~~~~~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~--- 115 (557)
.|..-..--+.+..|+++....+||-+||+-.|+.- . ... .-.+.+++..+-.|+.+++.
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy-~------~~~----------piDVH~lNa~~~RWtk~pp~~~k 65 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDY-D------AKD----------PIDVHVLNAENYRWTKMPPGITK 65 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCccccccc-c------cCC----------cceeEEeeccceeEEecCccccc
Confidence 587644434677889999999999999998543210 0 011 23488999999999988751
Q ss_pred ----------CCcccccCeecCCCcEEEEcCCCC--CC-CeEEEEcCCCCCCCceecCC--cccccccCcceEEEecCCc
Q 041651 116 ----------TDTWCSSGSVLPNGTLVQSGGYND--GD-HVVRTFTPCDDDQCDWIELP--QHLSERRWYATNQILPDGR 180 (557)
Q Consensus 116 ----------~~~~c~~~~~l~dG~i~v~GG~~~--g~-~~v~~ydp~~~~t~~W~~~~--~~m~~~R~y~s~~~L~dG~ 180 (557)
+-.++...+++.++++|+-||.++ |. +....|||+ +++|.... .-++.+|-.|++|++ ++.
T Consensus 66 a~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~---t~~W~~p~v~G~vPgaRDGHsAcV~-gn~ 141 (392)
T KOG4693|consen 66 ATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE---TNVWKKPEVEGFVPGARDGHSACVW-GNQ 141 (392)
T ss_pred ccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccc---cccccccceeeecCCccCCceeeEE-CcE
Confidence 223455556777999999999875 32 567789999 99998632 236788999999999 789
Q ss_pred EEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecC
Q 041651 181 IIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPE 260 (557)
Q Consensus 181 vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~ 260 (557)
.||+||..... ..|. ++ ...+|..|-+|.. +-.
T Consensus 142 MyiFGGye~~a-~~FS-----------------~d----------------------------~h~ld~~TmtWr~-~~T 174 (392)
T KOG4693|consen 142 MYIFGGYEEDA-QRFS-----------------QD----------------------------THVLDFATMTWRE-MHT 174 (392)
T ss_pred EEEecChHHHH-Hhhh-----------------cc----------------------------ceeEeccceeeee-hhc
Confidence 99999974321 0110 01 2368888889973 422
Q ss_pred C--CCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCcccc-ccccccccccCCceEEEEecCCCCcceee---
Q 041651 261 I--PGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFA-LATQGVFIRAISTCGRLVVSHANPSWVME--- 334 (557)
Q Consensus 261 l--p~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~-~~~~~~~~pa~~s~~~~d~~~~~~~W~~~--- 334 (557)
. |.. -|.+| .++++ ++..||+||..+.... .+..+.| .+.+-.+|+.. ..|...
T Consensus 175 kg~Ppr-wRDFH--~a~~~------------~~~MYiFGGR~D~~gpfHs~~e~Y---c~~i~~ld~~T--~aW~r~p~~ 234 (392)
T KOG4693|consen 175 KGDPPR-WRDFH--TASVI------------DGMMYIFGGRSDESGPFHSIHEQY---CDTIMALDLAT--GAWTRTPEN 234 (392)
T ss_pred cCCCch-hhhhh--hhhhc------------cceEEEeccccccCCCccchhhhh---cceeEEEeccc--cccccCCCC
Confidence 1 111 24454 33333 8999999998642211 1112334 23444566654 689853
Q ss_pred -cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEec---CCCCCcccccccceeccC
Q 041651 335 -EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVM---EPSTRPRMYHSSAILLTD 410 (557)
Q Consensus 335 -~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~---~~~~~~R~yhs~a~llpd 410 (557)
-.|.+|..|++-+. ||++|++||.. |.- +.-.....+|||.|. .|+.+ ..-+.+|.-|.+.+. +
T Consensus 235 ~~~P~GRRSHS~fvY-ng~~Y~FGGYn-g~l-----n~HfndLy~FdP~t~---~W~~I~~~Gk~P~aRRRqC~~v~--g 302 (392)
T KOG4693|consen 235 TMKPGGRRSHSTFVY-NGKMYMFGGYN-GTL-----NVHFNDLYCFDPKTS---MWSVISVRGKYPSARRRQCSVVS--G 302 (392)
T ss_pred CcCCCcccccceEEE-cceEEEecccc-hhh-----hhhhcceeecccccc---hheeeeccCCCCCcccceeEEEE--C
Confidence 35889999987665 99999999987 431 111236789999999 99875 345677877754444 9
Q ss_pred CcEEEecCCCC
Q 041651 411 GRVLIGGSNPH 421 (557)
Q Consensus 411 G~V~v~GG~~~ 421 (557)
+|||..||...
T Consensus 303 ~kv~LFGGTsP 313 (392)
T KOG4693|consen 303 GKVYLFGGTSP 313 (392)
T ss_pred CEEEEecCCCC
Confidence 99999999744
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=152.33 Aligned_cols=239 Identities=17% Similarity=0.279 Sum_probs=156.1
Q ss_pred CCCCCCCCCCceEEccCC-------------cccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccC
Q 041651 29 VLPPYAGSQGEWNLLHES-------------IGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDC 95 (557)
Q Consensus 29 ~~~~~~~~~g~W~~~~~~-------------~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 95 (557)
.+...++.+-+|..+++. +-.+.-|.+|...+|+|+|||.+.. .|.|-
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~-------egaCN------------ 105 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDD-------EGACN------------ 105 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCc-------ccccc------------
Confidence 455667778889987641 1123359999999999999997531 24442
Q ss_pred cceEEEEECCCCcEEECcc---CCCcccccCeecCCCcEEEEcCCCCC----CCeEEEEcCCCCCCCceecCCccccccc
Q 041651 96 TAHSILYDVATNAYRPLMV---QTDTWCSSGSVLPNGTLVQSGGYNDG----DHVVRTFTPCDDDQCDWIELPQHLSERR 168 (557)
Q Consensus 96 ~~~~~~yDp~t~~w~~l~~---~~~~~c~~~~~l~dG~i~v~GG~~~g----~~~v~~ydp~~~~t~~W~~~~~~m~~~R 168 (557)
...+|||+|++|....+ .+..+-...+++.++.+||+||+.+. ++++..+|-. +-+|+++-..=.-+|
T Consensus 106 --~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~---TmtWr~~~Tkg~Ppr 180 (392)
T KOG4693|consen 106 --LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFA---TMTWREMHTKGDPPR 180 (392)
T ss_pred --eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEecc---ceeeeehhccCCCch
Confidence 36799999999987654 23334444455668899999998632 4678889988 899998753112345
Q ss_pred C--cceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEE
Q 041651 169 W--YATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSIL 246 (557)
Q Consensus 169 ~--y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~ 246 (557)
| .|+++++ +++.||+||+..... |-. ...+. |.. ....
T Consensus 181 wRDFH~a~~~-~~~MYiFGGR~D~~g---pfH-------------s~~e~--------Yc~---------------~i~~ 220 (392)
T KOG4693|consen 181 WRDFHTASVI-DGMMYIFGGRSDESG---PFH-------------SIHEQ--------YCD---------------TIMA 220 (392)
T ss_pred hhhhhhhhhc-cceEEEeccccccCC---Ccc-------------chhhh--------hcc---------------eeEE
Confidence 5 6888777 899999999864321 110 00111 111 1126
Q ss_pred EeCCCCeEEEEecCC---CCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEE
Q 041651 247 FDYKQNKVLKEYPEI---PGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLV 323 (557)
Q Consensus 247 yDp~t~~W~~~~p~l---p~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d 323 (557)
+|.+|..|.+ .|+- |.+ |..| .+-+ | ++++|++||.+.. ... -.+...++|
T Consensus 221 ld~~T~aW~r-~p~~~~~P~G--RRSH--S~fv--------Y----ng~~Y~FGGYng~-ln~--------HfndLy~Fd 274 (392)
T KOG4693|consen 221 LDLATGAWTR-TPENTMKPGG--RRSH--STFV--------Y----NGKMYMFGGYNGT-LNV--------HFNDLYCFD 274 (392)
T ss_pred Eecccccccc-CCCCCcCCCc--cccc--ceEE--------E----cceEEEecccchh-hhh--------hhcceeecc
Confidence 8999999985 4543 433 4443 2333 4 9999999998732 111 123334444
Q ss_pred ecCCCCcceee----cCCCCceeeeEEEcCCCeEEEEcCcC
Q 041651 324 VSHANPSWVME----EMPLPRVMGDMILLPNGDVIIINGAQ 360 (557)
Q Consensus 324 ~~~~~~~W~~~----~M~~~R~~~~~v~lpdG~I~vvGG~~ 360 (557)
|.. ..|+.. .-|.+|...+++++ ++|||++||..
T Consensus 275 P~t--~~W~~I~~~Gk~P~aRRRqC~~v~-g~kv~LFGGTs 312 (392)
T KOG4693|consen 275 PKT--SMWSVISVRGKYPSARRRQCSVVS-GGKVYLFGGTS 312 (392)
T ss_pred ccc--chheeeeccCCCCCcccceeEEEE-CCEEEEecCCC
Confidence 443 478864 56888888888776 99999999975
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.58 E-value=1.9e-13 Score=148.60 Aligned_cols=258 Identities=14% Similarity=0.219 Sum_probs=179.8
Q ss_pred cccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcc-eEEEEECCCCcEEECccC---CCccccc
Q 041651 47 IGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTA-HSILYDVATNAYRPLMVQ---TDTWCSS 122 (557)
Q Consensus 47 ~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~yDp~t~~w~~l~~~---~~~~c~~ 122 (557)
+..++.|++++.++++|++||...+ .+. .+ .+.++|..+..|...... +..+...
T Consensus 58 p~~R~~hs~~~~~~~~~vfGG~~~~---------~~~------------~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~ 116 (482)
T KOG0379|consen 58 PIPRAGHSAVLIGNKLYVFGGYGSG---------DRL------------TDLDLYVLDLESQLWTKPAATGDEPSPRYGH 116 (482)
T ss_pred cchhhccceeEECCEEEEECCCCCC---------Ccc------------ccceeEEeecCCcccccccccCCCCCcccce
Confidence 4567889999899999999997421 110 11 488999999999876542 2223333
Q ss_pred CeecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCceecCCc--ccccccCcceEEEecCCcEEEEcCcCCCceeEecC
Q 041651 123 GSVLPNGTLVQSGGYNDG---DHVVRTFTPCDDDQCDWIELPQ--HLSERRWYATNQILPDGRIIIIGGRRQFNYEFYPK 197 (557)
Q Consensus 123 ~~~l~dG~i~v~GG~~~g---~~~v~~ydp~~~~t~~W~~~~~--~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~ 197 (557)
.....+.+||++||.... .+++..||+. +++|..+.. .++.+|++|++++. +.++||.||.+...
T Consensus 117 ~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~---t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~------ 186 (482)
T KOG0379|consen 117 SLSAVGDKLYLFGGTDKKYRNLNELHSLDLS---TRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTG------ 186 (482)
T ss_pred eEEEECCeEEEEccccCCCCChhheEeccCC---CCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcc------
Confidence 334457899999998631 3589999999 999987642 37889999999888 79999999975321
Q ss_pred CCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCC-CCCCCCccCCCCceE
Q 041651 198 SDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEI-PGADPRNYPSTGSSV 276 (557)
Q Consensus 198 ~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~l-p~~~~r~~~~~g~~v 276 (557)
. .+ ++.++||..+.+|.+ +... +...+|..| ++++
T Consensus 187 --------~-----~~----------------------------ndl~i~d~~~~~W~~-~~~~g~~P~pR~gH--~~~~ 222 (482)
T KOG0379|consen 187 --------D-----SL----------------------------NDLHIYDLETSTWSE-LDTQGEAPSPRYGH--AMVV 222 (482)
T ss_pred --------c-----ce----------------------------eeeeeecccccccee-cccCCCCCCCCCCc--eEEE
Confidence 0 00 124599999999985 4211 111257665 3444
Q ss_pred eecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee----cCCCCceeeeEEEcCCCe
Q 041651 277 LLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME----EMPLPRVMGDMILLPNGD 352 (557)
Q Consensus 277 llp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~v~lpdG~ 352 (557)
. +.+++++||...+.. .++.+.++|+.. -+|... .+|.+|..|.++. ...+
T Consensus 223 ~------------~~~~~v~gG~~~~~~----------~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~-~~~~ 277 (482)
T KOG0379|consen 223 V------------GNKLLVFGGGDDGDV----------YLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTV-SGDH 277 (482)
T ss_pred E------------CCeEEEEeccccCCc----------eecceEeeeccc--ceeeeccccCCCCCCcceeeeEE-ECCE
Confidence 3 889999999762221 367888999886 688842 6899999999885 4889
Q ss_pred EEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCC----CCCcccccccceeccCCcE
Q 041651 353 VIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEP----STRPRMYHSSAILLTDGRV 413 (557)
Q Consensus 353 I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~----~~~~R~yhs~a~llpdG~V 413 (557)
++++||...+. ..++.+...||.++. .|+.+.. .+.+|..|...+.-..+..
T Consensus 278 ~~l~gG~~~~~------~~~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
T KOG0379|consen 278 LLLFGGGTDPK------QEPLGDLYGLDLETL---VWSKVESVGVVRPSPRLGHAAELIDELGKD 333 (482)
T ss_pred EEEEcCCcccc------ccccccccccccccc---ceeeeeccccccccccccccceeeccCCcc
Confidence 99999976321 114557788999988 8887543 3578888876666544443
No 25
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.43 E-value=7.6e-12 Score=136.10 Aligned_cols=213 Identities=16% Similarity=0.238 Sum_probs=151.5
Q ss_pred ccccCeecCCCcEEEEcCCCCC--CC--eEEEEcCCCCCCCceecCCc--ccccccCcceEEEecCCcEEEEcCcCCCce
Q 041651 119 WCSSGSVLPNGTLVQSGGYNDG--DH--VVRTFTPCDDDQCDWIELPQ--HLSERRWYATNQILPDGRIIIIGGRRQFNY 192 (557)
Q Consensus 119 ~c~~~~~l~dG~i~v~GG~~~g--~~--~v~~ydp~~~~t~~W~~~~~--~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~ 192 (557)
+....+.+.+.++||+||...+ .. ++.+||-. +..|..... .-+.+|..++++++ +.++|++||.+...
T Consensus 61 R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~---~~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~- 135 (482)
T KOG0379|consen 61 RAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLE---SQLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGTDKKY- 135 (482)
T ss_pred hhccceeEECCEEEEECCCCCCCccccceeEEeecC---CcccccccccCCCCCcccceeEEEE-CCeEEEEccccCCC-
Confidence 3444555569999999997532 22 48999988 788987542 24578999999888 79999999986411
Q ss_pred eEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCC-CCCCccCC
Q 041651 193 EFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPG-ADPRNYPS 271 (557)
Q Consensus 193 E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~-~~~r~~~~ 271 (557)
+ . +. +.+.||+.+++|.. +.+... ..+|..|
T Consensus 136 --------------~---~-~~----------------------------~l~~~d~~t~~W~~-l~~~~~~P~~r~~H- 167 (482)
T KOG0379|consen 136 --------------R---N-LN----------------------------ELHSLDLSTRTWSL-LSPTGDPPPPRAGH- 167 (482)
T ss_pred --------------C---C-hh----------------------------heEeccCCCCcEEE-ecCcCCCCCCcccc-
Confidence 0 0 00 13489999999984 432211 1257765
Q ss_pred CCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee----cCCCCceeeeEEE
Q 041651 272 TGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME----EMPLPRVMGDMIL 347 (557)
Q Consensus 272 ~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~v~ 347 (557)
.+++. +.++||+||.+.... ..+++++||+.. .+|... .-|.||..|.+++
T Consensus 168 -s~~~~------------g~~l~vfGG~~~~~~----------~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~gH~~~~ 222 (482)
T KOG0379|consen 168 -SATVV------------GTKLVVFGGIGGTGD----------SLNDLHIYDLET--STWSELDTQGEAPSPRYGHAMVV 222 (482)
T ss_pred -eEEEE------------CCEEEEECCccCccc----------ceeeeeeecccc--ccceecccCCCCCCCCCCceEEE
Confidence 33332 889999999863210 367889999886 579863 6788999999877
Q ss_pred cCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEec---CCCCCcccccccceeccCCcEEEecCCCCc
Q 041651 348 LPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVM---EPSTRPRMYHSSAILLTDGRVLIGGSNPHI 422 (557)
Q Consensus 348 lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~---~~~~~~R~yhs~a~llpdG~V~v~GG~~~~ 422 (557)
. +++++++||...+. ..+..+.++|-.+- +|..+ ...+.+|++|+.++. .-++++.||....
T Consensus 223 ~-~~~~~v~gG~~~~~-------~~l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 223 V-GNKLLVFGGGDDGD-------VYLNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred E-CCeEEEEeccccCC-------ceecceEeeecccc---eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 6 99999999976221 12347899999998 99865 457899999987744 7788888887653
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.30 E-value=6.4e-11 Score=122.44 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=167.0
Q ss_pred cEEECcc----CCCcccccCeecCCCcEEEEcCCCCC-CCeEEEEcCCCCCCCceecCC--cccccccCcceEEEecCCc
Q 041651 108 AYRPLMV----QTDTWCSSGSVLPNGTLVQSGGYNDG-DHVVRTFTPCDDDQCDWIELP--QHLSERRWYATNQILPDGR 180 (557)
Q Consensus 108 ~w~~l~~----~~~~~c~~~~~l~dG~i~v~GG~~~g-~~~v~~ydp~~~~t~~W~~~~--~~m~~~R~y~s~~~L~dG~ 180 (557)
.|+.+.. .+..+...-++....-|+|+||-++| .++...|+.+ +++|..-+ .+.+.+-.-++.+.+ +.|
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa---tnqWf~PavrGDiPpgcAA~Gfvcd-Gtr 93 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA---TNQWFAPAVRGDIPPGCAAFGFVCD-GTR 93 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc---cceeecchhcCCCCCchhhcceEec-Cce
Confidence 5766543 22334444455567789999998777 4678899999 89997521 235555555666555 679
Q ss_pred EEEEcCcCC---CceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCC----
Q 041651 181 IIIIGGRRQ---FNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQN---- 252 (557)
Q Consensus 181 vyvvGG~~~---~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~---- 252 (557)
||++||..+ .+-|.| -+..+ ..|..+..-...+...+...--|.|.+...|-|+|||-.-+.=||+.|
T Consensus 94 ilvFGGMvEYGkYsNdLYELQasR----WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQASR----WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred EEEEccEeeeccccchHHHhhhhh----hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchh
Confidence 999999754 233455 22211 134433211111222333444577888899999999933222233322
Q ss_pred ----------------eEEEEec--CCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccc
Q 041651 253 ----------------KVLKEYP--EIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIR 314 (557)
Q Consensus 253 ----------------~W~~~~p--~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~p 314 (557)
.|...+. .+|. +|..| .+|+..- .|+-..|++|.||... .
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~--pRESH---TAViY~e-----KDs~~skmvvyGGM~G-~----------- 227 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPP--PRESH---TAVIYTE-----KDSKKSKMVVYGGMSG-C----------- 227 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCC--Ccccc---eeEEEEe-----ccCCcceEEEEccccc-c-----------
Confidence 3432111 2232 57765 5565321 1333679999999863 2
Q ss_pred cCCceEEEEecCCCCcceee----cCCCCceeeeEEEcCCCeEEEEcCcCC------CCCCcccCCCCccccEEEcCCCC
Q 041651 315 AISTCGRLVVSHANPSWVME----EMPLPRVMGDMILLPNGDVIIINGAQL------GTAGWELARGPMTRPIIYRPSEQ 384 (557)
Q Consensus 315 a~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~v~lpdG~I~vvGG~~~------g~~g~~~~~~~~~~~e~YDP~t~ 384 (557)
.+.....+|+.. -.|.+. --|.+|+.|.+++. .+|+||+||.-- -.+-.+..-....+.-|++.++.
T Consensus 228 RLgDLW~Ldl~T--l~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~ 304 (830)
T KOG4152|consen 228 RLGDLWTLDLDT--LTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM 304 (830)
T ss_pred cccceeEEecce--eecccccccCCCCCCcccccceee-cceeEEecceeeeeccccccccccceeeeccceeeeeecch
Confidence 255666777764 579863 35788999998765 999999999621 00001111123346789999999
Q ss_pred CCCceEec-------CCCCCcccccccceeccCCcEEEecCCCC
Q 041651 385 TSRRFSVM-------EPSTRPRMYHSSAILLTDGRVLIGGSNPH 421 (557)
Q Consensus 385 ~g~~W~~~-------~~~~~~R~yhs~a~llpdG~V~v~GG~~~ 421 (557)
+|+.+ ...+.+|..|..+.+ +-|+|+=-|.+.
T Consensus 305 ---~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRDG 343 (830)
T KOG4152|consen 305 ---AWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRDG 343 (830)
T ss_pred ---heeeeeeccccccccccccccceeEEe--ccEEEEEeccch
Confidence 99864 125677888855555 889999888653
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.20 E-value=7.5e-10 Score=112.40 Aligned_cols=220 Identities=17% Similarity=0.318 Sum_probs=147.0
Q ss_pred CcEEEEcCCC-CCC-----CeEEEEcCCCCCCCceecCCc-ccccccCcceEEEecCCcEEEEcCcCCCceeEecCCCCC
Q 041651 129 GTLVQSGGYN-DGD-----HVVRTFTPCDDDQCDWIELPQ-HLSERRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDED 201 (557)
Q Consensus 129 G~i~v~GG~~-~g~-----~~v~~ydp~~~~t~~W~~~~~-~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~ 201 (557)
..++++||.. +|. +....||.. .++|..+.. .-+.+|..|.+++.+.|.+++.||.-.. |..
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k---~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq--- 147 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTK---KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQ--- 147 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEecc---ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cch---
Confidence 4899999954 332 466788988 899998753 2567899999999998999999994220 221
Q ss_pred CCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEEeCCCCeEEEEecCCCC-CCCCccCCCCceEeecC
Q 041651 202 LSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILFDYKQNKVLKEYPEIPG-ADPRNYPSTGSSVLLPL 280 (557)
Q Consensus 202 ~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~-~~~r~~~~~g~~vllp~ 280 (557)
..+ ..| .+.|+||.++++|++ +. +++ ..+|+-| -+.+
T Consensus 148 --------~qF----------~HY----------------kD~W~fd~~trkweq-l~-~~g~PS~RSGH--RMva---- 185 (521)
T KOG1230|consen 148 --------EQF----------HHY----------------KDLWLFDLKTRKWEQ-LE-FGGGPSPRSGH--RMVA---- 185 (521)
T ss_pred --------hhh----------hhh----------------hheeeeeeccchhee-ec-cCCCCCCCccc--eeEE----
Confidence 000 011 135789999999985 53 222 2257654 2333
Q ss_pred cCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee--c--CCCCceeeeEEEcCCCeEEEE
Q 041651 281 DERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME--E--MPLPRVMGDMILLPNGDVIII 356 (557)
Q Consensus 281 ~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~--~--M~~~R~~~~~v~lpdG~I~vv 356 (557)
| ..+++++||..+.. ...+| .+.++++|+.. =+|+.. + -|.+|+.+++.+.|+|.|+|-
T Consensus 186 ----w----K~~lilFGGFhd~n----r~y~Y---yNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 186 ----W----KRQLILFGGFHDSN----RDYIY---YNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred ----e----eeeEEEEcceecCC----CceEE---eeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 3 88999999986321 01223 47788888875 589875 3 489999999999999999999
Q ss_pred cCcCCCCCCcccCC-CCccccEEEcCCCC--CCCceEecCC---CCCcccccccceeccCCcEEEecCC
Q 041651 357 NGAQLGTAGWELAR-GPMTRPIIYRPSEQ--TSRRFSVMEP---STRPRMYHSSAILLTDGRVLIGGSN 419 (557)
Q Consensus 357 GG~~~g~~g~~~~~-~~~~~~e~YDP~t~--~g~~W~~~~~---~~~~R~yhs~a~llpdG~V~v~GG~ 419 (557)
||++.-..--..+. ..+..+.+-+|.++ ..-.|+.+.+ -+.||...|+++ .++++-|.+||.
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v-a~n~kal~FGGV 316 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV-AKNHKALFFGGV 316 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE-ecCCceEEecce
Confidence 99863110000000 01224566677773 1126788765 478999997665 589999999996
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.15 E-value=1.8e-09 Score=111.91 Aligned_cols=281 Identities=15% Similarity=0.216 Sum_probs=165.0
Q ss_pred CCCCCCCCCceEEccCCcc----cceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECC
Q 041651 30 LPPYAGSQGEWNLLHESIG----ISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVA 105 (557)
Q Consensus 30 ~~~~~~~~g~W~~~~~~~~----~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~ 105 (557)
-+......-+|..+....+ .+--|-+|..-.-++++||-+.|. .....+||..
T Consensus 9 ~~~a~~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGi-----------------------iDELHvYNTa 65 (830)
T KOG4152|consen 9 SEEAEKNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGI-----------------------IDELHVYNTA 65 (830)
T ss_pred cchhhhcccceEEEecccCCCCCccccchheeeeeeEEEecCCcccc-----------------------hhhhhhhccc
Confidence 3444455667988764332 222455666677888888854321 1235789999
Q ss_pred CCcEEECccC--CCcccccCeecCCC-cEEEEcCCCC-CCCeEEEEcCCCCCCCce--ecCCc------ccccccCcceE
Q 041651 106 TNAYRPLMVQ--TDTWCSSGSVLPNG-TLVQSGGYND-GDHVVRTFTPCDDDQCDW--IELPQ------HLSERRWYATN 173 (557)
Q Consensus 106 t~~w~~l~~~--~~~~c~~~~~l~dG-~i~v~GG~~~-g~~~v~~ydp~~~~t~~W--~~~~~------~m~~~R~y~s~ 173 (557)
+|+|..-+.- ...-|++..++.|| +||++||..+ |.-+-+.|..+ ..+| .++.+ .++-+|-.|+-
T Consensus 66 tnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQ---asRWeWkrlkp~~p~nG~pPCPRlGHSF 142 (830)
T KOG4152|consen 66 TNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQ---ASRWEWKRLKPKTPKNGPPPCPRLGHSF 142 (830)
T ss_pred cceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhh---hhhhhHhhcCCCCCCCCCCCCCccCcee
Confidence 9999865542 34568777776665 8999999864 33345567666 4444 44421 25678999988
Q ss_pred EEecCCcEEEEcCcCCC------ce-----eEe-cCCCCCCCCCceeeecccccccccccCCccceEEEe---eC---Cc
Q 041651 174 QILPDGRIIIIGGRRQF------NY-----EFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLL---PD---GN 235 (557)
Q Consensus 174 ~~L~dG~vyvvGG~~~~------~~-----E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~---~~---G~ 235 (557)
... .+|-|++||..+. .+ .+| -....|...-.|.. +. +....+...-.|..+. .| .|
T Consensus 143 sl~-gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~i-p~---t~Gv~P~pRESHTAViY~eKDs~~sk 217 (830)
T KOG4152|consen 143 SLV-GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDI-PI---TYGVLPPPRESHTAVIYTEKDSKKSK 217 (830)
T ss_pred EEe-ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEec-cc---ccCCCCCCcccceeEEEEeccCCcce
Confidence 766 7999999996431 11 122 00000100112321 10 1111111111233332 23 46
Q ss_pred EEEEEcC------ceEEEeCCCCeEEEEecCCCC--CCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCC---ccc
Q 041651 236 LFIFANT------RSILFDYKQNKVLKEYPEIPG--ADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQN---ASF 304 (557)
Q Consensus 236 ifv~gg~------~~~~yDp~t~~W~~~~p~lp~--~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~---~~~ 304 (557)
++++||- +.|..|..+-+|.+ |.+.+ ..+|+-| .++++ .+|.||+||.-. +..
T Consensus 218 mvvyGGM~G~RLgDLW~Ldl~Tl~W~k--p~~~G~~PlPRSLH--sa~~I------------GnKMyvfGGWVPl~~~~~ 281 (830)
T KOG4152|consen 218 MVVYGGMSGCRLGDLWTLDLDTLTWNK--PSLSGVAPLPRSLH--SATTI------------GNKMYVFGGWVPLVMDDV 281 (830)
T ss_pred EEEEcccccccccceeEEecceeeccc--ccccCCCCCCcccc--cceee------------cceeEEecceeeeecccc
Confidence 9999983 57889999999985 32211 0157776 23333 889999999621 111
Q ss_pred cccccccccccCCceEEEEecCCCCcceee--------cCCCCceeeeEEEcCCCeEEEEcCcC
Q 041651 305 ALATQGVFIRAISTCGRLVVSHANPSWVME--------EMPLPRVMGDMILLPNGDVIIINGAQ 360 (557)
Q Consensus 305 ~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~--------~M~~~R~~~~~v~lpdG~I~vvGG~~ 360 (557)
.....++---.+++..++++.. ..|+.. ..|.+|..||++.. +.++|+--|.+
T Consensus 282 ~~~~hekEWkCTssl~clNldt--~~W~tl~~d~~ed~tiPR~RAGHCAvAi-gtRlYiWSGRD 342 (830)
T KOG4152|consen 282 KVATHEKEWKCTSSLACLNLDT--MAWETLLMDTLEDNTIPRARAGHCAVAI-GTRLYIWSGRD 342 (830)
T ss_pred ccccccceeeeccceeeeeecc--hheeeeeeccccccccccccccceeEEe-ccEEEEEeccc
Confidence 1111111122456677788875 589852 27888999998876 99999999876
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.14 E-value=6.1e-10 Score=113.06 Aligned_cols=205 Identities=16% Similarity=0.213 Sum_probs=136.0
Q ss_pred CCCCCCCCCCceEEccC-C-c-ccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECC
Q 041651 29 VLPPYAGSQGEWNLLHE-S-I-GISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVA 105 (557)
Q Consensus 29 ~~~~~~~~~g~W~~~~~-~-~-~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~ 105 (557)
.+=.|+-...+|..+.. + + +.++.++++.+.|.++++||.-.. |++. .|-+....++||..
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS------Pnq~----------qF~HYkD~W~fd~~ 162 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS------PNQE----------QFHHYKDLWLFDLK 162 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC------cchh----------hhhhhhheeeeeec
Confidence 34567888999998752 2 3 344455666678999999985322 3332 12255678899999
Q ss_pred CCcEEECccC--CCcccccCeecCCCcEEEEcCCCCC------CCeEEEEcCCCCCCCceecCCcc--cccccCcceEEE
Q 041651 106 TNAYRPLMVQ--TDTWCSSGSVLPNGTLVQSGGYNDG------DHVVRTFTPCDDDQCDWIELPQH--LSERRWYATNQI 175 (557)
Q Consensus 106 t~~w~~l~~~--~~~~c~~~~~l~dG~i~v~GG~~~g------~~~v~~ydp~~~~t~~W~~~~~~--m~~~R~y~s~~~ 175 (557)
|++|++|... +..+...-.++.-.+++++||+.+. .+.+++||.. +-+|+++.+. -+.+|..++..+
T Consensus 163 trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd---tykW~Klepsga~PtpRSGcq~~v 239 (521)
T KOG1230|consen 163 TRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD---TYKWSKLEPSGAGPTPRSGCQFSV 239 (521)
T ss_pred cchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc---ceeeeeccCCCCCCCCCCcceEEe
Confidence 9999999863 4555555567778899999998653 3678899998 8999987542 368999999999
Q ss_pred ecCCcEEEEcCcCCC-----------ceeEe---cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEc
Q 041651 176 LPDGRIIIIGGRRQF-----------NYEFY---PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFAN 241 (557)
Q Consensus 176 L~dG~vyvvGG~~~~-----------~~E~y---P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg 241 (557)
.++|.|||.||+... ....| |.. + ..++|.-.++-..-.-+.++.-| .+.+.++++-+.|||
T Consensus 240 tpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~--~-~~dKw~W~kvkp~g~kPspRsgf-sv~va~n~kal~FGG 315 (521)
T KOG1230|consen 240 TPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED--G-REDKWVWTKVKPSGVKPSPRSGF-SVAVAKNHKALFFGG 315 (521)
T ss_pred cCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCc--C-CCcceeEeeccCCCCCCCCCCce-eEEEecCCceEEecc
Confidence 999999999997421 01223 542 1 12345322211000000122223 356778999999998
Q ss_pred C----------------ceEEEeCCCCeEEE
Q 041651 242 T----------------RSILFDYKQNKVLK 256 (557)
Q Consensus 242 ~----------------~~~~yDp~t~~W~~ 256 (557)
- +...||...|+|..
T Consensus 316 V~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 316 VCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred eecccccchhhhhhhhhhhhheecccchhhH
Confidence 2 23468999999973
No 30
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=99.10 E-value=2.7e-09 Score=104.78 Aligned_cols=168 Identities=23% Similarity=0.395 Sum_probs=104.7
Q ss_pred CeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeeccccccccccc
Q 041651 142 HVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAE 221 (557)
Q Consensus 142 ~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~ 221 (557)
.....|||. +++++.+. +...-|+.+.+.|+||+++++||..... + .
T Consensus 46 a~s~~yD~~---tn~~rpl~--v~td~FCSgg~~L~dG~ll~tGG~~~G~--------~--------------~------ 92 (243)
T PF07250_consen 46 AHSVEYDPN---TNTFRPLT--VQTDTFCSGGAFLPDGRLLQTGGDNDGN--------K--------------A------ 92 (243)
T ss_pred EEEEEEecC---CCcEEecc--CCCCCcccCcCCCCCCCEEEeCCCCccc--------c--------------c------
Confidence 345679999 89999874 6788899999999999999999964311 0 0
Q ss_pred CCccceEEEeeCCcEEEEEcCceEEEeCC----CCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEc
Q 041651 222 NNLYPFVHLLPDGNLFIFANTRSILFDYK----QNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICG 297 (557)
Q Consensus 222 ~~~yp~~~~~~~G~ifv~gg~~~~~yDp~----t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~G 297 (557)
...|+|. +..|.. .+.. +..+|+|+ ++..|| +|+|+|+|
T Consensus 93 ----------------------ir~~~p~~~~~~~~w~e-~~~~-m~~~RWYp---T~~~L~----------DG~vlIvG 135 (243)
T PF07250_consen 93 ----------------------IRIFTPCTSDGTCDWTE-SPND-MQSGRWYP---TATTLP----------DGRVLIVG 135 (243)
T ss_pred ----------------------eEEEecCCCCCCCCceE-Cccc-ccCCCccc---cceECC----------CCCEEEEe
Confidence 1134443 356874 4421 34479997 566666 89999999
Q ss_pred CCCCccccccccccccccCC-ceEEEEecCCCCcceee-cC--CCC-ceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCC
Q 041651 298 GAQNASFALATQGVFIRAIS-TCGRLVVSHANPSWVME-EM--PLP-RVMGDMILLPNGDVIIINGAQLGTAGWELARGP 372 (557)
Q Consensus 298 G~~~~~~~~~~~~~~~pa~~-s~~~~d~~~~~~~W~~~-~M--~~~-R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~ 372 (557)
|.....+ | |.|... .-.. ..|... .. ..+ -.+.-+.+||||+||+.+...
T Consensus 136 G~~~~t~-----E-~~P~~~~~~~~-------~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~------------ 190 (243)
T PF07250_consen 136 GSNNPTY-----E-FWPPKGPGPGP-------VTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG------------ 190 (243)
T ss_pred CcCCCcc-----c-ccCCccCCCCc-------eeeecchhhhccCccccCceEEEcCCCCEEEEEcCC------------
Confidence 9863222 2 223211 0000 011110 00 011 123345678999999987632
Q ss_pred ccccEEEcCCCCCCCce-EecCCCCC-ccccccc--ceeccC
Q 041651 373 MTRPIIYRPSEQTSRRF-SVMEPSTR-PRMYHSS--AILLTD 410 (557)
Q Consensus 373 ~~~~e~YDP~t~~g~~W-~~~~~~~~-~R~yhs~--a~llpd 410 (557)
..+||+.++ ++ +.++.++- +|.|.++ +++||=
T Consensus 191 ---s~i~d~~~n---~v~~~lP~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 191 ---SIIYDYKTN---TVVRTLPDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred ---cEEEeCCCC---eEEeeCCCCCCCceecCCCcceEEecC
Confidence 489999999 87 67777763 6888644 455554
No 31
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.88 E-value=1.1e-07 Score=95.76 Aligned_cols=242 Identities=19% Similarity=0.290 Sum_probs=142.6
Q ss_pred CCceEEccCCcccce-eEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccC
Q 041651 37 QGEWNLLHESIGISA-MHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQ 115 (557)
Q Consensus 37 ~g~W~~~~~~~~~~~-~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~ 115 (557)
.-.|+.++..++..+ ..+..+.++|+|+++|.....+ +. -+....+..|||.+|+|..+...
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~------~~-----------~~~~nd~Y~y~p~~nsW~kl~t~ 131 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS------SS-----------PQVFNDAYRYDPSTNSWHKLDTR 131 (381)
T ss_pred CCCceEcccCCCcccccchheeeCCeEEEeeccccCCC------CC-----------ceEeeeeEEecCCCChhheeccc
Confidence 467998876554444 4444567999999999753221 10 01235689999999999999875
Q ss_pred CCc-ccccCeecCCC-cEEEEcCCCC------------------------------------CCCeEEEEcCCCCCCCce
Q 041651 116 TDT-WCSSGSVLPNG-TLVQSGGYND------------------------------------GDHVVRTFTPCDDDQCDW 157 (557)
Q Consensus 116 ~~~-~c~~~~~l~dG-~i~v~GG~~~------------------------------------g~~~v~~ydp~~~~t~~W 157 (557)
..+ .-...++..++ +|+++||... -.+.+..|||+ +++|
T Consensus 132 sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~---~n~W 208 (381)
T COG3055 132 SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS---TNQW 208 (381)
T ss_pred cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc---cchh
Confidence 333 22233333454 9999999520 02467889999 8999
Q ss_pred ecCCcccc-cccCcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcE
Q 041651 158 IELPQHLS-ERRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNL 236 (557)
Q Consensus 158 ~~~~~~m~-~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~i 236 (557)
..+.. .+ .++.. ++++..++++.+|-| |++|-. + ..|.. .
T Consensus 209 ~~~G~-~pf~~~aG-sa~~~~~n~~~lInG------EiKpGL-R----t~~~k--------------------------~ 249 (381)
T COG3055 209 RNLGE-NPFYGNAG-SAVVIKGNKLTLING------EIKPGL-R----TAEVK--------------------------Q 249 (381)
T ss_pred hhcCc-CcccCccC-cceeecCCeEEEEcc------eecCCc-c----cccee--------------------------E
Confidence 98763 44 45654 455566788888877 444331 0 00100 0
Q ss_pred EEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCC-cc---ccccccccc
Q 041651 237 FIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQN-AS---FALATQGVF 312 (557)
Q Consensus 237 fv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~-~~---~~~~~~~~~ 312 (557)
..+.-..-+|. .++++|.. -.....|.+--+ ..+. +++++|.||..- ++ |.+. ..|
T Consensus 250 --------~~~~~~~~~w~-~l~~lp~~--~~~~~eGvAGaf----~G~s---~~~~lv~GGAnF~Ga~~~y~~G--k~~ 309 (381)
T COG3055 250 --------ADFGGDNLKWL-KLSDLPAP--IGSNKEGVAGAF----SGKS---NGEVLVAGGANFPGALKAYKNG--KFY 309 (381)
T ss_pred --------EEeccCceeee-eccCCCCC--CCCCccccceec----ccee---CCeEEEecCCCChhHHHHHHhc--ccc
Confidence 02223345787 47766653 111111222111 1222 789999999753 11 1111 011
Q ss_pred -ccc-----CCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCC
Q 041651 313 -IRA-----ISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLG 362 (557)
Q Consensus 313 -~pa-----~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g 362 (557)
.+. .+.+..+| +..|+.. .||.++.++.++.. +++||++||...+
T Consensus 310 AH~Gl~K~w~~~Vy~~d----~g~Wk~~GeLp~~l~YG~s~~~-nn~vl~IGGE~~~ 361 (381)
T COG3055 310 AHEGLSKSWNSEVYIFD----NGSWKIVGELPQGLAYGVSLSY-NNKVLLIGGETSG 361 (381)
T ss_pred cccchhhhhhceEEEEc----CCceeeecccCCCccceEEEec-CCcEEEEccccCC
Confidence 111 12333444 4799998 99999999877655 8999999998643
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=2.5e-07 Score=93.15 Aligned_cols=257 Identities=17% Similarity=0.268 Sum_probs=153.3
Q ss_pred CCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc-cccCcceEEEecCCcEEEEcCcCCC---
Q 041651 115 QTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQILPDGRIIIIGGRRQF--- 190 (557)
Q Consensus 115 ~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~vyvvGG~~~~--- 190 (557)
.+..+-.+...+.+..+||-=|.. | .+....|.++. ...|++.++ .+ .+|-.+.++++ +|++||.||....
T Consensus 33 lPvg~KnG~Ga~ig~~~YVGLGs~-G-~afy~ldL~~~-~k~W~~~a~-FpG~~rnqa~~a~~-~~kLyvFgG~Gk~~~~ 107 (381)
T COG3055 33 LPVGFKNGAGALIGDTVYVGLGSA-G-TAFYVLDLKKP-GKGWTKIAD-FPGGARNQAVAAVI-GGKLYVFGGYGKSVSS 107 (381)
T ss_pred CCccccccccceecceEEEEeccC-C-ccceehhhhcC-CCCceEccc-CCCcccccchheee-CCeEEEeeccccCCCC
Confidence 333344444444555788755532 1 33344454421 478999986 55 57877777777 9999999997421
Q ss_pred ------ceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCC-cEEEEEcC--------------------
Q 041651 191 ------NYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDG-NLFIFANT-------------------- 242 (557)
Q Consensus 191 ------~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G-~ifv~gg~-------------------- 242 (557)
++-.| |.. ++|..++....+ .+--+.....++ +|+++||-
T Consensus 108 ~~~~~nd~Y~y~p~~------nsW~kl~t~sP~------gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 108 SPQVFNDAYRYDPST------NSWHKLDTRSPT------GLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred CceEeeeeEEecCCC------Chhheecccccc------ccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 23456 774 378655432111 111233344455 99999981
Q ss_pred ---------------------ceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCC
Q 041651 243 ---------------------RSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQN 301 (557)
Q Consensus 243 ---------------------~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~ 301 (557)
....|||.++.|.. +-..| .++.+|++++.- ++++.++-|.-.
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~-~G~~p-----f~~~aGsa~~~~----------~n~~~lInGEiK 239 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRN-LGENP-----FYGNAGSAVVIK----------GNKLTLINGEIK 239 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhh-cCcCc-----ccCccCcceeec----------CCeEEEEcceec
Confidence 14579999999973 43333 334446666531 667888877532
Q ss_pred ccccccccccccccCCc--eEEEEecCCCCcceee-cCCCCceee-e-----EEEcCCCeEEEEcCcCCCC------CCc
Q 041651 302 ASFALATQGVFIRAIST--CGRLVVSHANPSWVME-EMPLPRVMG-D-----MILLPNGDVIIINGAQLGT------AGW 366 (557)
Q Consensus 302 ~~~~~~~~~~~~pa~~s--~~~~d~~~~~~~W~~~-~M~~~R~~~-~-----~v~lpdG~I~vvGG~~~g~------~g~ 366 (557)
|.+++ +.+++....+.+|... ++|.+-... . .---.+|.++|.||+..-. .|.
T Consensus 240 ------------pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk 307 (381)
T COG3055 240 ------------PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGK 307 (381)
T ss_pred ------------CCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcc
Confidence 23333 4467887777899986 555433211 0 0112489999999975210 111
Q ss_pred ccCCCCc-----cccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEecCCCCcc
Q 041651 367 ELARGPM-----TRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNPHIY 423 (557)
Q Consensus 367 ~~~~~~~-----~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~~~~ 423 (557)
..+.+.+ ..+.++| .+ .|+.+..++.++.|- +.+.-.+.||++||....+
T Consensus 308 ~~AH~Gl~K~w~~~Vy~~d--~g---~Wk~~GeLp~~l~YG--~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 308 FYAHEGLSKSWNSEVYIFD--NG---SWKIVGELPQGLAYG--VSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred cccccchhhhhhceEEEEc--CC---ceeeecccCCCccce--EEEecCCcEEEEccccCCC
Confidence 1122211 2355566 77 999999999999984 4445688999999986543
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.78 E-value=1.4e-08 Score=74.97 Aligned_cols=50 Identities=18% Similarity=0.370 Sum_probs=41.8
Q ss_pred CceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcc
Q 041651 339 PRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPR 399 (557)
Q Consensus 339 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R 399 (557)
+|..++++++ +++|||+||.... ......+++|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 5888887765 9999999998631 223568999999999 999999999998
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.39 E-value=2.4e-07 Score=67.22 Aligned_cols=47 Identities=17% Similarity=0.393 Sum_probs=38.1
Q ss_pred CceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCC
Q 041651 339 PRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPST 396 (557)
Q Consensus 339 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~ 396 (557)
+|..++++++ +++|||+||... ....+.++|+|||.++ +|+.+++|+
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCEEEEE-CCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 5888887776 999999999873 1234568999999999 999998875
No 35
>PF13964 Kelch_6: Kelch motif
Probab=98.36 E-value=5.1e-07 Score=66.54 Aligned_cols=46 Identities=24% Similarity=0.513 Sum_probs=39.1
Q ss_pred ccccCeecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCceecCCccccccc
Q 041651 119 WCSSGSVLPNGTLVQSGGYND---GDHVVRTFTPCDDDQCDWIELPQHLSERR 168 (557)
Q Consensus 119 ~c~~~~~l~dG~i~v~GG~~~---g~~~v~~ydp~~~~t~~W~~~~~~m~~~R 168 (557)
++..+++..+++|||+||... ..+++++|||. +++|+.+++ |+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~---t~~W~~~~~-mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPE---TNTWEQLPP-MPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCC---CCcEEECCC-CCCCC
Confidence 456667778999999999865 25799999999 999999996 99988
No 36
>smart00612 Kelch Kelch domain.
Probab=98.36 E-value=5.2e-07 Score=64.97 Aligned_cols=45 Identities=16% Similarity=0.389 Sum_probs=37.3
Q ss_pred eEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCccccccccee
Q 041651 352 DVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAIL 407 (557)
Q Consensus 352 ~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~l 407 (557)
+|||+||... . ....++|+|||.++ +|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~~-~-------~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG-G-------QRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC-C-------ceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 5899999752 1 23457999999999 99999999999999987665
No 37
>smart00612 Kelch Kelch domain.
Probab=98.15 E-value=3.8e-06 Score=60.35 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=38.2
Q ss_pred cEEEEcCCCC--CCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCC
Q 041651 130 TLVQSGGYND--GDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDG 179 (557)
Q Consensus 130 ~i~v~GG~~~--g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG 179 (557)
+||++||... ..+++++|||. +++|.+.++ |+.+|.+++++++ +|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~-~~~~r~~~~~~~~-~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPE---TNKWTPLPS-MPTPRSGHGVAVI-NG 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCC---CCeEccCCC-CCCccccceEEEe-CC
Confidence 5899999853 24789999999 899999986 9999999998887 43
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.02 E-value=4.7e-06 Score=61.04 Aligned_cols=48 Identities=10% Similarity=0.284 Sum_probs=29.8
Q ss_pred CceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCC
Q 041651 339 PRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPST 396 (557)
Q Consensus 339 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~ 396 (557)
+|..|+++.+.+++|||+||.... ...+..+++||++++ +|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 688999888878999999998631 123457899999999 999998775
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.95 E-value=1.5e-05 Score=58.41 Aligned_cols=48 Identities=8% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccce
Q 041651 350 NGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAI 406 (557)
Q Consensus 350 dG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~ 406 (557)
+++|||+||..... .....++.+||+.++ +|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~------~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG------GTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCC------CCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 57999999987211 223457899999999 9999999999999997654
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.92 E-value=2.3e-05 Score=57.44 Aligned_cols=49 Identities=10% Similarity=0.306 Sum_probs=35.8
Q ss_pred CceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCC
Q 041651 339 PRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPST 396 (557)
Q Consensus 339 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~ 396 (557)
+|..|.+++ +|+||||+||...+. .......+++||+++. +|+.+++|+
T Consensus 1 ~r~~hs~~~-~~~kiyv~GG~~~~~-----~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVV-LDGKIYVFGGYGTDN-----GGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceEEEE-ECCEEEEECCcccCC-----CCcccceeEEEECCCC---EEeecCCCC
Confidence 577777655 599999999981111 1122357999999999 999998773
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.71 E-value=1.3e-05 Score=57.96 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=34.9
Q ss_pred ccccCeecCCCcEEEEcCCCC-C--CCeEEEEcCCCCCCCceecCCcccc
Q 041651 119 WCSSGSVLPNGTLVQSGGYND-G--DHVVRTFTPCDDDQCDWIELPQHLS 165 (557)
Q Consensus 119 ~c~~~~~l~dG~i~v~GG~~~-g--~~~v~~ydp~~~~t~~W~~~~~~m~ 165 (557)
++..+++..+++|||+||... . .+++++||+. +++|+++++ |+
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~---~~~W~~~~~-mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE---TNTWEELPP-MP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETT---TTEEEEEEE-ES
T ss_pred CccCEEEEECCEEEEEeeecccCceeeeEEEEeCC---CCEEEEcCC-CC
Confidence 455566777999999999864 2 4789999999 999999986 75
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.70 E-value=7e-05 Score=54.83 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCC-C---CCeEEEEcCCCCCCCceecCCcccccccCcceEEE
Q 041651 128 NGTLVQSGGYND-G---DHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQI 175 (557)
Q Consensus 128 dG~i~v~GG~~~-g---~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~ 175 (557)
+++|||+||... + .++++.||+. +++|+++++ ++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~---~~~W~~~~~-~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD---TNTWTRIGD-LPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC---CCEEEECCC-CCCCccceEEEE
Confidence 478999999872 2 4789999999 899999975 999999998875
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.61 E-value=0.0001 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=14.8
Q ss_pred ccCcceEEEecCCcEEEEcCcCC
Q 041651 167 RRWYATNQILPDGRIIIIGGRRQ 189 (557)
Q Consensus 167 ~R~y~s~~~L~dG~vyvvGG~~~ 189 (557)
+|++|+++.+.+++||++||.+.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~ 23 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS 23 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE
T ss_pred CcceEEEEEEeCCeEEEECCCCC
Confidence 68999999987899999999753
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.27 E-value=0.00035 Score=51.05 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=32.2
Q ss_pred cccCeecCCCcEEEEcCC--CC---CCCeEEEEcCCCCCCCceecCCccc
Q 041651 120 CSSGSVLPNGTLVQSGGY--ND---GDHVVRTFTPCDDDQCDWIELPQHL 164 (557)
Q Consensus 120 c~~~~~l~dG~i~v~GG~--~~---g~~~v~~ydp~~~~t~~W~~~~~~m 164 (557)
+...++..+++|||+||. .. -.+++++||+. +.+|++++. |
T Consensus 3 ~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~---t~~W~~~~~-~ 48 (49)
T PF07646_consen 3 YGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE---TNQWTELSP-M 48 (49)
T ss_pred cceEEEEECCEEEEECCcccCCCCcccceeEEEECC---CCEEeecCC-C
Confidence 444566779999999999 21 14689999999 999999875 5
No 45
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.23 E-value=0.18 Score=50.34 Aligned_cols=251 Identities=17% Similarity=0.279 Sum_probs=130.2
Q ss_pred EEEEECC-CCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 99 SILYDVA-TNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 99 ~~~yDp~-t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
.-+||.- +|+-..++ ++..|-=..+..|.|..+..||.+ +.+.+|+..+.+...=..+...+...+.|-+.+...
T Consensus 79 lIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLd---N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~ 154 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLD---NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL 154 (343)
T ss_pred EEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcC---ceeEEEecccccccccceeeeeecCccceeEEEEEc
Confidence 5577744 34443332 222232233566899999999984 578889876221111112222355667788887655
Q ss_pred -CCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEee-CCcEEEEEcC--ceEEEeCCCCe
Q 041651 178 -DGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLP-DGNLFIFANT--RSILFDYKQNK 253 (557)
Q Consensus 178 -dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~-~G~ifv~gg~--~~~~yDp~t~~ 253 (557)
|+.|+.-.| ..+.-+|... ++ .. ...+.-.+.|. -...+.| +++.|+.|+- .+.+||.+...
T Consensus 155 dD~~ilT~SG--D~TCalWDie-~g---~~--~~~f~GH~gDV------~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 155 DDNHILTGSG--DMTCALWDIE-TG---QQ--TQVFHGHTGDV------MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred CCCceEecCC--CceEEEEEcc-cc---eE--EEEecCCcccE------EEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 455554444 2333444110 11 01 11111011111 1233456 8999999985 47789988876
Q ss_pred EEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCC--Ccc
Q 041651 254 VLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHAN--PSW 331 (557)
Q Consensus 254 W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~--~~W 331 (557)
-.+.+ ++.+.-. -+...+| +|.-++.|-.+ .+|-.||+..+- ..+
T Consensus 221 c~qtF---~ghesDI----Nsv~ffP----------~G~afatGSDD----------------~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 221 CVQTF---EGHESDI----NSVRFFP----------SGDAFATGSDD----------------ATCRLYDLRADQELAVY 267 (343)
T ss_pred eeEee---ccccccc----ceEEEcc----------CCCeeeecCCC----------------ceeEEEeecCCcEEeee
Confidence 55444 4321111 1233334 55555555422 356667776521 112
Q ss_pred eeecCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCC
Q 041651 332 VMEEMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDG 411 (557)
Q Consensus 332 ~~~~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG 411 (557)
+..+...+-... +.. .-|+++..|..+ +++++||--+. ++-..+. -+.-|. |+.-+-|||
T Consensus 268 s~~~~~~gitSv-~FS-~SGRlLfagy~d-------------~~c~vWDtlk~--e~vg~L~-GHeNRv--Scl~~s~DG 327 (343)
T KOG0286|consen 268 SHDSIICGITSV-AFS-KSGRLLFAGYDD-------------FTCNVWDTLKG--ERVGVLA-GHENRV--SCLGVSPDG 327 (343)
T ss_pred ccCcccCCceeE-EEc-ccccEEEeeecC-------------CceeEeecccc--ceEEEee-ccCCee--EEEEECCCC
Confidence 222222222221 122 379999988533 36789997665 1223332 334454 566678999
Q ss_pred cEEEecCCC
Q 041651 412 RVLIGGSNP 420 (557)
Q Consensus 412 ~V~v~GG~~ 420 (557)
.-+..|+-+
T Consensus 328 ~av~TgSWD 336 (343)
T KOG0286|consen 328 MAVATGSWD 336 (343)
T ss_pred cEEEecchh
Confidence 999998853
No 46
>PLN02772 guanylate kinase
Probab=96.96 E-value=0.002 Score=67.59 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=54.1
Q ss_pred CceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEe---cCCCCCcccccccceeccCCcEEE
Q 041651 339 PRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSV---MEPSTRPRMYHSSAILLTDGRVLI 415 (557)
Q Consensus 339 ~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~---~~~~~~~R~yhs~a~llpdG~V~v 415 (557)
+|..+.+++. ++++||+||..... .....+.+||+.|. +|+. ...-|.+|-.|| |+++.|.||||
T Consensus 24 ~~~~~tav~i-gdk~yv~GG~~d~~-------~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhS-a~v~~~~rilv 91 (398)
T PLN02772 24 PKNRETSVTI-GDKTYVIGGNHEGN-------TLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYS-AVVLNKDRILV 91 (398)
T ss_pred CCCcceeEEE-CCEEEEEcccCCCc-------cccceEEEEECCCC---cEecccccCCCCCCCCcce-EEEECCceEEE
Confidence 6666777665 99999999976321 11347899999999 9975 467889999996 66678999999
Q ss_pred ecCCC
Q 041651 416 GGSNP 420 (557)
Q Consensus 416 ~GG~~ 420 (557)
.+++.
T Consensus 92 ~~~~~ 96 (398)
T PLN02772 92 IKKGS 96 (398)
T ss_pred EeCCC
Confidence 99753
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.85 E-value=0.43 Score=50.77 Aligned_cols=242 Identities=11% Similarity=0.135 Sum_probs=116.6
Q ss_pred eEEEEECCCCc--EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc--cccCcceE
Q 041651 98 HSILYDVATNA--YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS--ERRWYATN 173 (557)
Q Consensus 98 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~--~~R~y~s~ 173 (557)
.+..+|.+|++ |+.-.. .... +..++.+++||+..+. ..+..||+.++ ...|..-.. .+ ..|...+.
T Consensus 131 ~l~ald~~tG~~~W~~~~~-~~~~--ssP~v~~~~v~v~~~~----g~l~ald~~tG-~~~W~~~~~-~~~~~~~~~~sP 201 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVA-GEAL--SRPVVSDGLVLVHTSN----GMLQALNESDG-AVKWTVNLD-VPSLTLRGESAP 201 (394)
T ss_pred EEEEEECCCCCCcccccCC-Ccee--cCCEEECCEEEEECCC----CEEEEEEccCC-CEeeeecCC-CCcccccCCCCC
Confidence 47789998876 754321 1222 2234457888875442 46889999854 456875322 11 11222333
Q ss_pred EEecCCcEEEEcCcCCCceeEe-cCCCCCCCCCceee-eccccccccc---ccCCccceEEEeeCCcEEEEEc-CceEEE
Q 041651 174 QILPDGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFM-LHFLLETRDY---AENNLYPFVHLLPDGNLFIFAN-TRSILF 247 (557)
Q Consensus 174 ~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~-~~~l~~t~d~---~~~~~yp~~~~~~~G~ifv~gg-~~~~~y 247 (557)
++. +|.+|+..+. +. +-.+ +. +| ...|.. .......... .....-| ++.+|.||+.+. ....++
T Consensus 202 ~v~-~~~v~~~~~~-g~-v~a~d~~--~G--~~~W~~~~~~~~~~~~~~~~~~~~~sP---~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 202 ATA-FGGAIVGGDN-GR-VSAVLME--QG--QLIWQQRISQPTGATEIDRLVDVDTTP---VVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred EEE-CCEEEEEcCC-CE-EEEEEcc--CC--hhhheeccccCCCccchhcccccCCCc---EEECCEEEEEEcCCeEEEE
Confidence 333 6777775432 21 1112 32 12 123431 1000000000 0000112 245888888764 356788
Q ss_pred eCCCCe--EEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEec
Q 041651 248 DYKQNK--VLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVS 325 (557)
Q Consensus 248 Dp~t~~--W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~ 325 (557)
|+++++ |.+. ... .. ..++. +++||+.... ..+..+|+.
T Consensus 272 d~~tG~~~W~~~---~~~--~~-----~~~~~------------~~~vy~~~~~-----------------g~l~ald~~ 312 (394)
T PRK11138 272 DLRSGQIVWKRE---YGS--VN-----DFAVD------------GGRIYLVDQN-----------------DRVYALDTR 312 (394)
T ss_pred ECCCCCEEEeec---CCC--cc-----CcEEE------------CCEEEEEcCC-----------------CeEEEEECC
Confidence 998875 5431 111 00 11221 7888886532 234455555
Q ss_pred CCCCcceeecCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccc
Q 041651 326 HANPSWVMEEMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSA 405 (557)
Q Consensus 326 ~~~~~W~~~~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a 405 (557)
+....|+...+. .+.....++ .+|+||+... + | .+.++|+.+.. ..|+.-- .....+.+-+
T Consensus 313 tG~~~W~~~~~~-~~~~~sp~v-~~g~l~v~~~-~-G------------~l~~ld~~tG~-~~~~~~~--~~~~~~s~P~ 373 (394)
T PRK11138 313 GGVELWSQSDLL-HRLLTAPVL-YNGYLVVGDS-E-G------------YLHWINREDGR-FVAQQKV--DSSGFLSEPV 373 (394)
T ss_pred CCcEEEcccccC-CCcccCCEE-ECCEEEEEeC-C-C------------EEEEEECCCCC-EEEEEEc--CCCcceeCCE
Confidence 444568654322 233333344 4899987532 1 2 45778888761 1465311 1112333333
Q ss_pred eeccCCcEEEecC
Q 041651 406 ILLTDGRVLIGGS 418 (557)
Q Consensus 406 ~llpdG~V~v~GG 418 (557)
+ .||+|||..-
T Consensus 374 ~--~~~~l~v~t~ 384 (394)
T PRK11138 374 V--ADDKLLIQAR 384 (394)
T ss_pred E--ECCEEEEEeC
Confidence 3 4899998743
No 48
>PRK13684 Ycf48-like protein; Provisional
Probab=96.62 E-value=1.1 Score=46.63 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=43.3
Q ss_pred CCcceeecCCCC---ceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCC-CCCcccccc
Q 041651 328 NPSWVMEEMPLP---RVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEP-STRPRMYHS 403 (557)
Q Consensus 328 ~~~W~~~~M~~~---R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~-~~~~R~yhs 403 (557)
..+|+...++.. ....++...++++++++|.. | .+|- ..+.|++|+.... ...+..+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G--------------~v~~-S~d~G~tW~~~~~~~~~~~~~~~ 307 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN--G--------------TLLV-SKDGGKTWEKDPVGEEVPSNFYK 307 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCC--C--------------eEEE-eCCCCCCCeECCcCCCCCcceEE
Confidence 358987544422 22334455678999998753 2 1221 2456679998753 233334443
Q ss_pred cceeccCCcEEEecCC
Q 041651 404 SAILLTDGRVLIGGSN 419 (557)
Q Consensus 404 ~a~llpdG~V~v~GG~ 419 (557)
.+...+++.|++|..
T Consensus 308 -~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 308 -IVFLDPEKGFVLGQR 322 (334)
T ss_pred -EEEeCCCceEEECCC
Confidence 445578899988875
No 49
>PLN02772 guanylate kinase
Probab=96.45 E-value=0.0096 Score=62.57 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=51.9
Q ss_pred cccCeecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCceecCC--cccccccCcceEEEecCCcEEEEcCcC
Q 041651 120 CSSGSVLPNGTLVQSGGYNDG---DHVVRTFTPCDDDQCDWIELP--QHLSERRWYATNQILPDGRIIIIGGRR 188 (557)
Q Consensus 120 c~~~~~l~dG~i~v~GG~~~g---~~~v~~ydp~~~~t~~W~~~~--~~m~~~R~y~s~~~L~dG~vyvvGG~~ 188 (557)
|...++..+.++||+||..+. ...+.+||+. +.+|..-. ..-+.+|-.|+++++.|++|+|+++..
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~---t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI---TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECC---CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 334455568899999997653 3578999999 89998643 235788999999999999999998654
No 50
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.09 E-value=2.3 Score=44.72 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=31.1
Q ss_pred eEEEEECCCCc--EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceec
Q 041651 98 HSILYDVATNA--YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIE 159 (557)
Q Consensus 98 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~ 159 (557)
.+..+|+.+++ |+.-.. .. +.+..++.++++|+..+. ..+..+|+.++ ...|+.
T Consensus 116 ~l~ald~~tG~~~W~~~~~-~~--~~~~p~v~~~~v~v~~~~----g~l~a~d~~tG-~~~W~~ 171 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLS-SE--VLSPPLVANGLVVVRTND----GRLTALDAATG-ERLWTY 171 (377)
T ss_pred EEEEEECCCCcEeeeeccC-ce--eecCCEEECCEEEEECCC----CeEEEEEcCCC-ceeeEE
Confidence 47788988776 653321 11 112233446777765432 46889999743 456864
No 51
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.64 E-value=3.2 Score=42.76 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCCCCCCCCC-CCceEEccCC-cccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEEC
Q 041651 27 SQVLPPYAGS-QGEWNLLHES-IGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDV 104 (557)
Q Consensus 27 ~~~~~~~~~~-~g~W~~~~~~-~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp 104 (557)
...+..|+-. .|+++.+... .+-.+...++-++|+.++++... ++ .+..|+.
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~---------~~-----------------~i~~~~~ 64 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP---------EF-----------------RVLSYRI 64 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC---------CC-----------------cEEEEEE
Confidence 3444455443 3677754321 11223344555788877666431 11 2456666
Q ss_pred C-CCcEEECccCC--CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcE
Q 041651 105 A-TNAYRPLMVQT--DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRI 181 (557)
Q Consensus 105 ~-t~~w~~l~~~~--~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~v 181 (557)
. +++++.+.... ..-| ..++.+||+.+.+..+. ...+.+||..++ ......... +.....-++++.-+||+.
T Consensus 65 ~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~-g~~~~~~~~-~~~~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 65 ADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN--ANCVSVSPLDKD-GIPVAPIQI-IEGLEGCHSANIDPDNRT 139 (330)
T ss_pred CCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC--CCeEEEEEECCC-CCCCCceee-ccCCCcccEeEeCCCCCE
Confidence 4 45665544221 1112 34556788876666543 357788877521 111111111 222233455666778877
Q ss_pred EEEcCcCCCceeEe
Q 041651 182 IIIGGRRQFNYEFY 195 (557)
Q Consensus 182 yvvGG~~~~~~E~y 195 (557)
+.+.......+.+|
T Consensus 140 l~v~~~~~~~v~v~ 153 (330)
T PRK11028 140 LWVPCLKEDRIRLF 153 (330)
T ss_pred EEEeeCCCCEEEEE
Confidence 66666655667777
No 52
>PF13854 Kelch_5: Kelch motif
Probab=95.57 E-value=0.027 Score=39.65 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=29.4
Q ss_pred CCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCC
Q 041651 336 MPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSE 383 (557)
Q Consensus 336 M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 383 (557)
+|.+|..|++++. +++|||.||... . ......++.+||..+
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence 4789999998876 899999999872 1 112234677777654
No 53
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=95.49 E-value=1.7 Score=42.45 Aligned_cols=142 Identities=13% Similarity=0.219 Sum_probs=82.0
Q ss_pred eEEEEECCCCcEEECccCCC--cccccCeecCCCcEEEEcCCCCCC-C-eEEEEcCCCCCCCceec-CCccccccc----
Q 041651 98 HSILYDVATNAYRPLMVQTD--TWCSSGSVLPNGTLVQSGGYNDGD-H-VVRTFTPCDDDQCDWIE-LPQHLSERR---- 168 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~--~~c~~~~~l~dG~i~v~GG~~~g~-~-~v~~ydp~~~~t~~W~~-~~~~m~~~R---- 168 (557)
.+++|+..+++|+.+..... ..... .+..+|.+|-+.-...+. . .+-.||.. +.+|.+ ++ ++..+
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~---~E~f~~~i~--~P~~~~~~~ 144 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVS---SERFKEFIP--LPCGNSDSV 144 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcc---cceEeeeee--cCccccccc
Confidence 57899999999999874321 11222 556789888776432211 2 68889999 888985 43 34322
Q ss_pred CcceEEEecCCcEEEEcCcCC-CceeEe-cCCCCCCCCCceee---ecccccccccccCCccceEEEeeCCcEEEEEcC-
Q 041651 169 WYATNQILPDGRIIIIGGRRQ-FNYEFY-PKSDEDLSFPQTFM---LHFLLETRDYAENNLYPFVHLLPDGNLFIFANT- 242 (557)
Q Consensus 169 ~y~s~~~L~dG~vyvvGG~~~-~~~E~y-P~~~~~~~~~~w~~---~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~- 242 (557)
.+...+.+ +|++-++..... .+.|+| -+. .+ ...|.. ++..... + .....+ ..++..+|+|.+....
T Consensus 145 ~~~~L~~~-~G~L~~v~~~~~~~~~~IWvl~d-~~--~~~W~k~~~i~~~~~~-~-~~~~~~-~~~~~~~g~I~~~~~~~ 217 (230)
T TIGR01640 145 DYLSLINY-KGKLAVLKQKKDTNNFDLWVLND-AG--KQEWSKLFTVPIPPLP-D-LVDDNF-LSGFTDKGEIVLCCEDE 217 (230)
T ss_pred cceEEEEE-CCEEEEEEecCCCCcEEEEEECC-CC--CCceeEEEEEcCcchh-h-hhhhee-EeEEeeCCEEEEEeCCC
Confidence 24556777 699888765432 347777 321 11 235763 2210000 0 001112 3456678998886653
Q ss_pred --c-eEEEeCCCC
Q 041651 243 --R-SILFDYKQN 252 (557)
Q Consensus 243 --~-~~~yDp~t~ 252 (557)
. ...||+++|
T Consensus 218 ~~~~~~~y~~~~~ 230 (230)
T TIGR01640 218 NPFYIFYYNVGEN 230 (230)
T ss_pred CceEEEEEeccCC
Confidence 2 567888765
No 54
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.37 E-value=2.3 Score=42.48 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=78.8
Q ss_pred eEEEEECCCCcEEECccCC---CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEE
Q 041651 98 HSILYDVATNAYRPLMVQT---DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQ 174 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~---~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~ 174 (557)
-+..+|++|.+.++.+... +.--...++..+|.+..+|-..- --+.||. ++.-...+. +.+-.-.++|
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~----yGrLdPa---~~~i~vfpa--PqG~gpyGi~ 195 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA----YGRLDPA---RNVISVFPA--PQGGGPYGIC 195 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc----ceecCcc---cCceeeecc--CCCCCCcceE
Confidence 3678999998888765432 22334567778899999984210 1145666 333222221 2222334678
Q ss_pred EecCCcEEEEcCcCC---------CceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEE--EcCc
Q 041651 175 ILPDGRIIIIGGRRQ---------FNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIF--ANTR 243 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~---------~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~--gg~~ 243 (557)
+.+||+|++..=..+ ...|++|.-+. + ..+ --+.+.-+-|++++. |+..
T Consensus 196 atpdGsvwyaslagnaiaridp~~~~aev~p~P~~------------~--~~g------sRriwsdpig~~wittwg~g~ 255 (353)
T COG4257 196 ATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNA------------L--KAG------SRRIWSDPIGRAWITTWGTGS 255 (353)
T ss_pred ECCCCcEEEEeccccceEEcccccCCcceecCCCc------------c--ccc------ccccccCccCcEEEeccCCce
Confidence 888999998732111 12344422100 0 000 012334456777765 4456
Q ss_pred eEEEeCCCCeEEEEecCCCCCCCCcc
Q 041651 244 SILFDYKQNKVLKEYPEIPGADPRNY 269 (557)
Q Consensus 244 ~~~yDp~t~~W~~~~p~lp~~~~r~~ 269 (557)
..+|||...+|. +. +||+..+|-|
T Consensus 256 l~rfdPs~~sW~-ey-pLPgs~arpy 279 (353)
T COG4257 256 LHRFDPSVTSWI-EY-PLPGSKARPY 279 (353)
T ss_pred eeEeCcccccce-ee-eCCCCCCCcc
Confidence 779999999997 45 4677656655
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.31 E-value=4.8 Score=42.73 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=31.9
Q ss_pred EEEEECCCCc--EEECccC-C-------CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceec
Q 041651 99 SILYDVATNA--YRPLMVQ-T-------DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIE 159 (557)
Q Consensus 99 ~~~yDp~t~~--w~~l~~~-~-------~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~ 159 (557)
+.++|.+|++ |+.-... . .....+..+..+++||+.+.. ..+..+|..++ ...|+.
T Consensus 81 l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~----g~l~ald~~tG-~~~W~~ 146 (394)
T PRK11138 81 VKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK----GQVYALNAEDG-EVAWQT 146 (394)
T ss_pred EEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC----CEEEEEECCCC-CCcccc
Confidence 6778877666 6532211 0 112223345557788765432 46889998754 567865
No 56
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.11 E-value=4.1 Score=40.78 Aligned_cols=225 Identities=20% Similarity=0.207 Sum_probs=124.0
Q ss_pred EEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCc---ceEEE
Q 041651 99 SILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWY---ATNQI 175 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y---~s~~~ 175 (557)
....||.|++....+...-..-++..+-+||...|+-+ ...+.++||+ +..-++.+ |+..+-+ -+++.
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~----~~aI~R~dpk---t~evt~f~--lp~~~a~~nlet~vf 155 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT----GLAIGRLDPK---TLEVTRFP--LPLEHADANLETAVF 155 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC----cceeEEecCc---ccceEEee--cccccCCCcccceee
Confidence 55789999999887765444444566678888888743 2378999998 44443332 3322222 23344
Q ss_pred ecCCcEEEEcCcCC--------CceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEE--EcCceE
Q 041651 176 LPDGRIIIIGGRRQ--------FNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIF--ANTRSI 245 (557)
Q Consensus 176 L~dG~vyvvGG~~~--------~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~--gg~~~~ 245 (557)
-++|.+...|-... ..+++||. | +.- .-| -.++.+||.+|+. .++...
T Consensus 156 D~~G~lWFt~q~G~yGrLdPa~~~i~vfpa-------------P--qG~------gpy-Gi~atpdGsvwyaslagnaia 213 (353)
T COG4257 156 DPWGNLWFTGQIGAYGRLDPARNVISVFPA-------------P--QGG------GPY-GICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred CCCccEEEeeccccceecCcccCceeeecc-------------C--CCC------CCc-ceEECCCCcEEEEeccccceE
Confidence 45688887763211 12344422 0 000 001 2467789999987 667667
Q ss_pred EEeCCCCeEEEEecCCCCC---CCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEE
Q 041651 246 LFDYKQNKVLKEYPEIPGA---DPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRL 322 (557)
Q Consensus 246 ~yDp~t~~W~~~~p~lp~~---~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~ 322 (557)
+.||.+..=. .+| .|.. ..|.- .+. ..+++.+. + + ...+..++
T Consensus 214 ridp~~~~ae-v~p-~P~~~~~gsRri---wsd-------------pig~~wit---t---w----------g~g~l~rf 259 (353)
T COG4257 214 RIDPFAGHAE-VVP-QPNALKAGSRRI---WSD-------------PIGRAWIT---T---W----------GTGSLHRF 259 (353)
T ss_pred EcccccCCcc-eec-CCCccccccccc---ccC-------------ccCcEEEe---c---c----------CCceeeEe
Confidence 7888877533 243 2321 01211 010 05666665 1 1 13455667
Q ss_pred EecCCCCcceeecCC--CCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCccc
Q 041651 323 VVSHANPSWVMEEMP--LPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRM 400 (557)
Q Consensus 323 d~~~~~~~W~~~~M~--~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~ 400 (557)
||.. .+|..-++| .+|-+.-- +=-.|+|+..- .. ...+..|||++. +++.+ +++|-
T Consensus 260 dPs~--~sW~eypLPgs~arpys~r-VD~~grVW~se-a~------------agai~rfdpeta---~ftv~---p~pr~ 317 (353)
T COG4257 260 DPSV--TSWIEYPLPGSKARPYSMR-VDRHGRVWLSE-AD------------AGAIGRFDPETA---RFTVL---PIPRP 317 (353)
T ss_pred Cccc--ccceeeeCCCCCCCcceee-eccCCcEEeec-cc------------cCceeecCcccc---eEEEe---cCCCC
Confidence 7765 479876554 45555322 22246776531 11 125789999999 99875 34555
Q ss_pred ccccceeccCCc
Q 041651 401 YHSSAILLTDGR 412 (557)
Q Consensus 401 yhs~a~llpdG~ 412 (557)
..+...| |||
T Consensus 318 n~gn~ql--~gr 327 (353)
T COG4257 318 NSGNIQL--DGR 327 (353)
T ss_pred CCCceec--cCC
Confidence 4333333 554
No 57
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.90 E-value=4.4 Score=40.09 Aligned_cols=133 Identities=13% Similarity=0.127 Sum_probs=66.0
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcE-EEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTL-VQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i-~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
.+.+||+.+++....-.... ...+.+..+||+. |++++. ...+.+||.. +.+.... +.....-...+..
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~---~~~v~~~d~~---~~~~~~~---~~~~~~~~~~~~~ 81 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASD---SDTIQVIDLA---TGEVIGT---LPSGPDPELFALH 81 (300)
T ss_pred EEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECC---CCeEEEEECC---CCcEEEe---ccCCCCccEEEEC
Confidence 36778887766433222111 1223455678875 466653 2578999987 5544321 1111111234556
Q ss_pred cCCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccc-eEEEeeCCcEEEEEcCc---eEEEeCCC
Q 041651 177 PDGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP-FVHLLPDGNLFIFANTR---SILFDYKQ 251 (557)
Q Consensus 177 ~dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp-~~~~~~~G~ifv~gg~~---~~~yDp~t 251 (557)
+||+.+.+.+.....+.+| .... .....++. ...+ .+...++|++++++..+ ...||..+
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~-----~~~~~~~~----------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETR-----KVLAEIPV----------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCC-----eEEeEeeC----------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 6777554444333345555 3210 00001110 0011 23456799988887643 34578877
Q ss_pred CeEE
Q 041651 252 NKVL 255 (557)
Q Consensus 252 ~~W~ 255 (557)
.+..
T Consensus 147 ~~~~ 150 (300)
T TIGR03866 147 YEIV 150 (300)
T ss_pred CeEE
Confidence 6544
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.86 E-value=3.8 Score=39.20 Aligned_cols=133 Identities=17% Similarity=0.260 Sum_probs=64.3
Q ss_pred EEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCccccc-ccCcceEEEec
Q 041651 99 SILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSE-RRWYATNQILP 177 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~-~R~y~s~~~L~ 177 (557)
+.+||..+++.......+..........++++.+++++.. ..+.+||.. +.+... . +.. ...-.+....+
T Consensus 33 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~~~~---~~~~~~--~-~~~~~~~i~~~~~~~ 103 (289)
T cd00200 33 IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTIRLWDLE---TGECVR--T-LTGHTSYVSSVAFSP 103 (289)
T ss_pred EEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeEEEEEcC---cccceE--E-EeccCCcEEEEEEcC
Confidence 6678877665322211222222234556788888888763 578899987 332111 1 111 11223344455
Q ss_pred CCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEc--CceEEEeCCCCeE
Q 041651 178 DGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFAN--TRSILFDYKQNKV 254 (557)
Q Consensus 178 dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg--~~~~~yDp~t~~W 254 (557)
++++++.|+.++ .+.+| .... .....+. ... ..--.+...+++++++.+. ....+||..+.+-
T Consensus 104 ~~~~~~~~~~~~-~i~~~~~~~~-----~~~~~~~---~~~-----~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 104 DGRILSSSSRDK-TIKVWDVETG-----KCLTTLR---GHT-----DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred CCCEEEEecCCC-eEEEEECCCc-----EEEEEec---cCC-----CcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 667777776443 34455 3210 0001111 000 0011223345677777664 4567899876553
No 59
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.79 E-value=4.7 Score=39.90 Aligned_cols=133 Identities=19% Similarity=0.209 Sum_probs=67.4
Q ss_pred EEEEECCCCcEEE-CccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 99 SILYDVATNAYRP-LMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 99 ~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
+.+||..+++... +...... ...++.++|+.+.+.+..+ +.+.+||.. +.+- +.. +.....-.+++..+
T Consensus 55 v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~--~~l~~~d~~---~~~~--~~~-~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 55 IQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANEDD--NLVTVIDIE---TRKV--LAE-IPVGVEPEGMAVSP 124 (300)
T ss_pred EEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCCC--CeEEEEECC---CCeE--EeE-eeCCCCcceEEECC
Confidence 6789998877654 2222221 2234557877554443222 478999987 4321 111 22222223455667
Q ss_pred CCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccc-eEEEeeCCcEEEEEc---CceEEEeCCCC
Q 041651 178 DGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYP-FVHLLPDGNLFIFAN---TRSILFDYKQN 252 (557)
Q Consensus 178 dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp-~~~~~~~G~ifv~gg---~~~~~yDp~t~ 252 (557)
||+.++++..+......| ... + ....... .. ..| .....++|+.+++++ ....+||..+.
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~--~---~~~~~~~--~~--------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKT--Y---EIVDNVL--VD--------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCC--C---eEEEEEE--cC--------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 999998876543333334 221 0 0000110 00 012 234457888655443 34678999887
Q ss_pred eEEE
Q 041651 253 KVLK 256 (557)
Q Consensus 253 ~W~~ 256 (557)
+..+
T Consensus 190 ~~~~ 193 (300)
T TIGR03866 190 KVIK 193 (300)
T ss_pred eeee
Confidence 6543
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.68 E-value=2.8 Score=44.64 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=119.1
Q ss_pred cceEEEEECCCCcEEE-CccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc--cccCcce
Q 041651 96 TAHSILYDVATNAYRP-LMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS--ERRWYAT 172 (557)
Q Consensus 96 ~~~~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~--~~R~y~s 172 (557)
.+.+.+|+..+.+-.. +....+.-| ++.+=.||+++.+|+.. ..|.+||-. +..-.. . |. +.+-..+
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~-s~~fR~DG~LlaaGD~s---G~V~vfD~k---~r~iLR--~-~~ah~apv~~~ 116 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVY-SVDFRSDGRLLAAGDES---GHVKVFDMK---SRVILR--Q-LYAHQAPVHVT 116 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhcccee-EEEeecCCeEEEccCCc---CcEEEeccc---cHHHHH--H-HhhccCceeEE
Confidence 3567888887765543 222333334 34455799999999863 468999954 311111 0 11 1111000
Q ss_pred EEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEE-e-eCCcEEEEEcCc--eEEEe
Q 041651 173 NQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHL-L-PDGNLFIFANTR--SILFD 248 (557)
Q Consensus 173 ~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~-~-~~G~ifv~gg~~--~~~yD 248 (557)
--.-.|+.+++.|+-+. ...+|-.. + ...... +....| |=++.. . .+++|++.||.+ ..+||
T Consensus 117 ~f~~~d~t~l~s~sDd~-v~k~~d~s-~-----a~v~~~-l~~htD------YVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDK-VVKYWDLS-T-----AYVQAE-LSGHTD------YVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred EecccCCeEEEecCCCc-eEEEEEcC-C-----cEEEEE-ecCCcc------eeEeeccccCCCeEEEecCCCceEEEEE
Confidence 00113788888776443 23333221 0 011111 111111 333322 2 367899999865 57899
Q ss_pred CCCC-eEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCC
Q 041651 249 YKQN-KVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHA 327 (557)
Q Consensus 249 p~t~-~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~ 327 (557)
.++. .|..++ .. ..| .-.++++. .+..|-.+||.. +-.+|+...
T Consensus 183 tR~~~~~v~el---nh----g~p---Ve~vl~lp-------sgs~iasAgGn~------------------vkVWDl~~G 227 (487)
T KOG0310|consen 183 TRSLTSRVVEL---NH----GCP---VESVLALP-------SGSLIASAGGNS------------------VKVWDLTTG 227 (487)
T ss_pred eccCCceeEEe---cC----CCc---eeeEEEcC-------CCCEEEEcCCCe------------------EEEEEecCC
Confidence 8876 665433 21 121 22233321 035666666642 122233211
Q ss_pred CCcceee-cCC-CCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccc
Q 041651 328 NPSWVME-EMP-LPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSA 405 (557)
Q Consensus 328 ~~~W~~~-~M~-~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a 405 (557)
+ +.. .|. +-..--+....-|++=++.||-+. .+-+|| +. .|+.+-.+..+----|++
T Consensus 228 ~---qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd--~t---~~Kvv~s~~~~~pvLsia 286 (487)
T KOG0310|consen 228 G---QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFD--TT---NYKVVHSWKYPGPVLSIA 286 (487)
T ss_pred c---eehhhhhcccceEEEEEeecCCceEeeccccc-------------ceEEEE--cc---ceEEEEeeecccceeeEE
Confidence 0 111 221 111111222234667777777651 578998 44 577665554443333555
Q ss_pred eeccCCcEEEecCCCC
Q 041651 406 ILLTDGRVLIGGSNPH 421 (557)
Q Consensus 406 ~llpdG~V~v~GG~~~ 421 (557)
+ .||++.+++|....
T Consensus 287 v-s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 287 V-SPDDQTVVIGMSNG 301 (487)
T ss_pred e-cCCCceEEEecccc
Confidence 4 58999999987643
No 61
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.55 E-value=4.6 Score=39.74 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=34.2
Q ss_pred cceEEEEECCCCcEEECccC--CCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 96 TAHSILYDVATNAYRPLMVQ--TDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 96 ~~~~~~yDp~t~~w~~l~~~--~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
..++.+||..+++=.++... +..--.+..+-.||+++.+||.+ ..++++|-+
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD---gt~kIWdlR 113 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED---GTVKIWDLR 113 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC---ceEEEEecc
Confidence 35689999988765444432 21222234556799999999973 368888876
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.69 E-value=11 Score=39.70 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=29.8
Q ss_pred EEEEECCCCc--EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceec
Q 041651 99 SILYDVATNA--YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIE 159 (557)
Q Consensus 99 ~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~ 159 (557)
+.+||+.+++ |+.- .....+. ..++.++++|+.+.. ..+..+|+.++ ...|..
T Consensus 77 v~a~d~~tG~~~W~~~--~~~~~~~-~p~v~~~~v~v~~~~----g~l~ald~~tG-~~~W~~ 131 (377)
T TIGR03300 77 VVALDAETGKRLWRVD--LDERLSG-GVGADGGLVFVGTEK----GEVIALDAEDG-KELWRA 131 (377)
T ss_pred EEEEEccCCcEeeeec--CCCCccc-ceEEcCCEEEEEcCC----CEEEEEECCCC-cEeeee
Confidence 7788988776 6532 1222222 233445666654332 46889998743 456864
No 63
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.59 E-value=9.9 Score=39.05 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=67.1
Q ss_pred EEEEECCC-CcEEECccCCC-cccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 99 SILYDVAT-NAYRPLMVQTD-TWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 99 ~~~yDp~t-~~w~~l~~~~~-~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
+.+||..+ ++++.+..... ......++-+||+.+.+|+.. ...+..|+... ..+++.... .+.+.....++.-
T Consensus 14 I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~--~g~l~~~~~-~~~~~~p~~i~~~ 88 (330)
T PRK11028 14 IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIAD--DGALTFAAE-SPLPGSPTHISTD 88 (330)
T ss_pred EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECC--CCceEEeee-ecCCCCceEEEEC
Confidence 67788754 46665543321 112233455688876666543 25677777641 344543322 2222222345556
Q ss_pred cCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEE-EeeCCcEEEEEc---CceEEEeCCCC
Q 041651 177 PDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVH-LLPDGNLFIFAN---TRSILFDYKQN 252 (557)
Q Consensus 177 ~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~-~~~~G~ifv~gg---~~~~~yDp~t~ 252 (557)
+||+.+.+.......+-+|.....+. .......+ +....|+.. +.++|+.+++.+ +...+||..++
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~g~---~~~~~~~~-------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKDGI---PVAPIQII-------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCCCC---CCCceeec-------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 68886665554444455552210010 00001100 011234543 557887554432 45788998764
Q ss_pred e
Q 041651 253 K 253 (557)
Q Consensus 253 ~ 253 (557)
.
T Consensus 159 g 159 (330)
T PRK11028 159 G 159 (330)
T ss_pred C
Confidence 3
No 64
>PF13854 Kelch_5: Kelch motif
Probab=93.16 E-value=0.093 Score=36.86 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.4
Q ss_pred cccccCcceEEEecCCcEEEEcCcCC
Q 041651 164 LSERRWYATNQILPDGRIIIIGGRRQ 189 (557)
Q Consensus 164 m~~~R~y~s~~~L~dG~vyvvGG~~~ 189 (557)
++.+|+.|++++. +++||+.||.+.
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~ 25 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG 25 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC
Confidence 3578999999988 799999999873
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.09 E-value=7.3 Score=41.59 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=43.8
Q ss_pred EEEEECCCCcEEECcc--CCC-cccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCC-ceecCCcccccccCcceEE
Q 041651 99 SILYDVATNAYRPLMV--QTD-TWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQC-DWIELPQHLSERRWYATNQ 174 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~--~~~-~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~-~W~~~~~~m~~~R~y~s~~ 174 (557)
+..||..+... .+.. .+| -+|... .-.++.|+++||++ ..++.||.+ +. .|.. . ++.+----.++
T Consensus 135 ~k~~d~s~a~v-~~~l~~htDYVR~g~~-~~~~~hivvtGsYD---g~vrl~DtR---~~~~~v~--e-lnhg~pVe~vl 203 (487)
T KOG0310|consen 135 VKYWDLSTAYV-QAELSGHTDYVRCGDI-SPANDHIVVTGSYD---GKVRLWDTR---SLTSRVV--E-LNHGCPVESVL 203 (487)
T ss_pred EEEEEcCCcEE-EEEecCCcceeEeecc-ccCCCeEEEecCCC---ceEEEEEec---cCCceeE--E-ecCCCceeeEE
Confidence 55677776664 3222 233 356433 23477899999995 479999988 44 4432 2 44333233456
Q ss_pred EecCCcEEEEcC
Q 041651 175 ILPDGRIIIIGG 186 (557)
Q Consensus 175 ~L~dG~vyvvGG 186 (557)
.|+.|.+++.-|
T Consensus 204 ~lpsgs~iasAg 215 (487)
T KOG0310|consen 204 ALPSGSLIASAG 215 (487)
T ss_pred EcCCCCEEEEcC
Confidence 666655555433
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.94 E-value=13 Score=38.67 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=70.8
Q ss_pred eEEEEECCCCcEEECccCCC-cccccCeecCC-CcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc-cccCcceEE
Q 041651 98 HSILYDVATNAYRPLMVQTD-TWCSSGSVLPN-GTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQ 174 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~-~~c~~~~~l~d-G~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~ 174 (557)
.+..||.++++++.+..... ......++-++ ..||++.-.......+..|+..++ +.+.+.+.. .. .+..-..++
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~-~~~~g~~p~~i~ 93 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNS-VPSGGSSPCHIA 93 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEE-EEESSSCEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-cceeEEeee-eccCCCCcEEEE
Confidence 45677889999987764211 11112333344 456666443112345666654411 356665543 33 344433445
Q ss_pred EecCCcEEEEcCcCCCceeEecCCCCCCCCCceeee-cccc-ccccc---ccCCccceE-EEeeCCcEEEE---EcCceE
Q 041651 175 ILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFML-HFLL-ETRDY---AENNLYPFV-HLLPDGNLFIF---ANTRSI 245 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~-~~l~-~t~d~---~~~~~yp~~-~~~~~G~ifv~---gg~~~~ 245 (557)
.-+||+.+++.-....++.+|+....+ .-... .... ..... ......||. ...|||+.+++ |.....
T Consensus 94 ~~~~g~~l~vany~~g~v~v~~l~~~g----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 94 VDPDGRFLYVANYGGGSVSVFPLDDDG----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTS----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EecCCCEEEEEEccCCeEEEEEccCCc----ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 556787777655555566777432111 11111 0000 00000 012235565 34568885444 345577
Q ss_pred EEeCCCCe
Q 041651 246 LFDYKQNK 253 (557)
Q Consensus 246 ~yDp~t~~ 253 (557)
+|+...++
T Consensus 170 ~~~~~~~~ 177 (345)
T PF10282_consen 170 VYDIDDDT 177 (345)
T ss_dssp EEEE-TTS
T ss_pred EEEEeCCC
Confidence 88776654
No 67
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.77 E-value=2.8 Score=42.98 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=79.4
Q ss_pred CceEEccCCcccceeEE-EEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccCC
Q 041651 38 GEWNLLHESIGISAMHM-QLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQT 116 (557)
Q Consensus 38 g~W~~~~~~~~~~~~h~-~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~ 116 (557)
.+|+.+.... ..++-. ....+|++++++.. |+ ....+|+-...|++.....
T Consensus 134 ~tW~~~~~~~-~gs~~~~~r~~dG~~vavs~~-----------G~----------------~~~s~~~G~~~w~~~~r~~ 185 (302)
T PF14870_consen 134 KTWQAVVSET-SGSINDITRSSDGRYVAVSSR-----------GN----------------FYSSWDPGQTTWQPHNRNS 185 (302)
T ss_dssp SSEEEEE-S-----EEEEEE-TTS-EEEEETT-----------SS----------------EEEEE-TT-SS-EEEE--S
T ss_pred CCeeEcccCC-cceeEeEEECCCCcEEEEECc-----------cc----------------EEEEecCCCccceEEccCc
Confidence 5899876432 333333 34579998888742 32 2457888888899887776
Q ss_pred CcccccCeecCCCcEEEEcCCCCCCCeEEEEc-CCCCCCCceecCCcccccccC-cceEEEecCCcEEEEcCcCCCceeE
Q 041651 117 DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFT-PCDDDQCDWIELPQHLSERRW-YATNQILPDGRIIIIGGRRQFNYEF 194 (557)
Q Consensus 117 ~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~yd-p~~~~t~~W~~~~~~m~~~R~-y~s~~~L~dG~vyvvGG~~~~~~E~ 194 (557)
.++-....+-+|+.++++. . .| .++.=| +.+ ..+|.+...+.....+ +..++.-.++.++++||... +
T Consensus 186 ~~riq~~gf~~~~~lw~~~-~-Gg--~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----l 255 (302)
T PF14870_consen 186 SRRIQSMGFSPDGNLWMLA-R-GG--QIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT----L 255 (302)
T ss_dssp SS-EEEEEE-TTS-EEEEE-T-TT--EEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----E
T ss_pred cceehhceecCCCCEEEEe-C-Cc--EEEEccCCCC--ccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc----E
Confidence 7777777788899998765 2 11 233222 221 5678873212333333 46677777899999999753 2
Q ss_pred e-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCce
Q 041651 195 Y-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRS 244 (557)
Q Consensus 195 y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~ 244 (557)
| ... . ..+|...+.... .+.|+|-..+. .+.+-|++|.+..
T Consensus 256 ~~S~D-g---GktW~~~~~~~~----~~~n~~~i~f~-~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 256 LVSTD-G---GKTWQKDRVGEN----VPSNLYRIVFV-NPDKGFVLGQDGV 297 (302)
T ss_dssp EEESS-T---TSS-EE-GGGTT----SSS---EEEEE-ETTEEEEE-STTE
T ss_pred EEeCC-C---CccceECccccC----CCCceEEEEEc-CCCceEEECCCcE
Confidence 3 332 1 357765432211 35577765554 5678899887654
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.45 E-value=9.4 Score=36.78 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=53.3
Q ss_pred CCCCCCCCCc--eEEccCCcccceeEE-EEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCC
Q 041651 30 LPPYAGSQGE--WNLLHESIGISAMHM-QLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVAT 106 (557)
Q Consensus 30 ~~~~~~~~g~--W~~~~~~~~~~~~h~-~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t 106 (557)
+.++|+.+|+ |+.-.. ........ .+..+++||+.... + ...+||+.|
T Consensus 5 l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~~-----------~-----------------~l~~~d~~t 55 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVASGD-----------G-----------------NLYALDAKT 55 (238)
T ss_dssp EEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEEETT-----------S-----------------EEEEEETTT
T ss_pred EEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEEcCC-----------C-----------------EEEEEECCC
Confidence 4455665665 887322 12333332 34368888876321 2 378999988
Q ss_pred CcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcee
Q 041651 107 NAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWI 158 (557)
Q Consensus 107 ~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~ 158 (557)
++..--.......... ....+++||+.... ..+..+|..++ .-.|.
T Consensus 56 G~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~----~~l~~~d~~tG-~~~W~ 101 (238)
T PF13360_consen 56 GKVLWRFDLPGPISGA-PVVDGGRVYVGTSD----GSLYALDAKTG-KVLWS 101 (238)
T ss_dssp SEEEEEEECSSCGGSG-EEEETTEEEEEETT----SEEEEEETTTS-CEEEE
T ss_pred CCEEEEeeccccccce-eeecccccccccce----eeeEecccCCc-ceeee
Confidence 8743222223332222 35567888877642 37899997744 55798
No 69
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.60 E-value=4.1 Score=39.68 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCcEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCc--CCCCCcccccEEEEEcCCCCccccccccc
Q 041651 233 DGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLD--ERNGSTSVQAEIMICGGAQNASFALATQG 310 (557)
Q Consensus 233 ~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~--~~~~~~~~~g~I~v~GG~~~~~~~~~~~~ 310 (557)
||-|.+.......++||.|.+|. .+|+.+. ++.++. .....+.-. .+.| ||+.+.....+.
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~--~~~~~~-~~~~~~G~d~~~~~Y------KVv~~~~~~~~~------- 67 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS--RRSNKE-SDTYFLGYDPIEKQY------KVLCFSDRSGNR------- 67 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCC--cccccc-cceEEEeecccCCcE------EEEEEEeecCCC-------
Confidence 45554333345568999999997 5875432 122221 101111111 1334 777665421100
Q ss_pred cccccCCceEEEEecCCCCcceee-cCC-CCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCc
Q 041651 311 VFIRAISTCGRLVVSHANPSWVME-EMP-LPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRR 388 (557)
Q Consensus 311 ~~~pa~~s~~~~d~~~~~~~W~~~-~M~-~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~ 388 (557)
....++.|++.. ++|+.. ..+ ........+.+ +|.||.+.-...+ ++...+..||..+. +
T Consensus 68 ----~~~~~~Vys~~~--~~Wr~~~~~~~~~~~~~~~v~~-~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~ 129 (230)
T TIGR01640 68 ----NQSEHQVYTLGS--NSWRTIECSPPHHPLKSRGVCI-NGVLYYLAYTLKT--------NPDYFIVSFDVSSE---R 129 (230)
T ss_pred ----CCccEEEEEeCC--CCccccccCCCCccccCCeEEE-CCEEEEEEEECCC--------CCcEEEEEEEcccc---e
Confidence 124678888876 589875 322 11111124444 9999998743211 11126889999999 9
Q ss_pred eEecCCCCCcccc-c-ccceeccCCcEEEecC
Q 041651 389 FSVMEPSTRPRMY-H-SSAILLTDGRVLIGGS 418 (557)
Q Consensus 389 W~~~~~~~~~R~y-h-s~a~llpdG~V~v~GG 418 (557)
|...-+++..+.. + ...+...+|++-++..
T Consensus 130 f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 130 FKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred EeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 9952233333321 1 1222223677766554
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.42 E-value=21 Score=41.72 Aligned_cols=234 Identities=9% Similarity=0.053 Sum_probs=105.8
Q ss_pred cCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecC--Cc-ccccccCcceEEEec-CCcEEEEcCcCCCceeEe-c
Q 041651 122 SGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIEL--PQ-HLSERRWYATNQILP-DGRIIIIGGRRQFNYEFY-P 196 (557)
Q Consensus 122 ~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~--~~-~m~~~R~y~s~~~L~-dG~vyvvGG~~~~~~E~y-P 196 (557)
+.++.+||+++++||.+ ..+.+||.... ....... +. .+.....-.+.+..+ ++..++.|+.++ ++.+| -
T Consensus 488 ~i~fs~dg~~latgg~D---~~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg-~v~lWd~ 562 (793)
T PLN00181 488 AIGFDRDGEFFATAGVN---KKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEG-VVQVWDV 562 (793)
T ss_pred EEEECCCCCEEEEEeCC---CEEEEEECCcc-cccccccccceEEecccCceeeEEeccCCCCEEEEEeCCC-eEEEEEC
Confidence 34566799999999973 57889986410 0111110 00 011111011122212 466777776653 45556 2
Q ss_pred CCCCCCCCCceeeecccccccccccCCccceEEEe-eCCcEEEEEcCc--eEEEeCCCCeEEEEecCCCCCCCCccCCCC
Q 041651 197 KSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLL-PDGNLFIFANTR--SILFDYKQNKVLKEYPEIPGADPRNYPSTG 273 (557)
Q Consensus 197 ~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~-~~G~ifv~gg~~--~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g 273 (557)
.. ......+.... ...+ .+... .+|.+++.|+.+ ..+||..+..-...+ .. .. . -
T Consensus 563 ~~--------~~~~~~~~~H~----~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~~---~~-~--v 620 (793)
T PLN00181 563 AR--------SQLVTEMKEHE----KRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---KT---KA-N--I 620 (793)
T ss_pred CC--------CeEEEEecCCC----CCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---ec---CC-C--e
Confidence 21 01111011100 0011 11122 378888888754 678998876543222 11 00 0 1
Q ss_pred ceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceeecCCCCceeeeEEEcCCCeE
Q 041651 274 SSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVMGDMILLPNGDV 353 (557)
Q Consensus 274 ~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~~M~~~R~~~~~v~lpdG~I 353 (557)
.++.+.. .+++.+++|+.+ ..+..+|+...........-..... ..+...++..
T Consensus 621 ~~v~~~~--------~~g~~latgs~d----------------g~I~iwD~~~~~~~~~~~~~h~~~V--~~v~f~~~~~ 674 (793)
T PLN00181 621 CCVQFPS--------ESGRSLAFGSAD----------------HKVYYYDLRNPKLPLCTMIGHSKTV--SYVRFVDSST 674 (793)
T ss_pred EEEEEeC--------CCCCEEEEEeCC----------------CeEEEEECCCCCccceEecCCCCCE--EEEEEeCCCE
Confidence 1222210 157888888754 2334455442111111111011111 1233347888
Q ss_pred EEEcCcCCCCCCcccCCCCccccEEEcCCCCC-CCceEecCCCCCcccccccceeccCCcEEEecCCCC
Q 041651 354 IIINGAQLGTAGWELARGPMTRPIIYRPSEQT-SRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNPH 421 (557)
Q Consensus 354 ~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~-g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~~ 421 (557)
+++|+.+ + ++.+||..+.. +..|..+..............+.++|+++++|+.++
T Consensus 675 lvs~s~D-~------------~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 675 LVSSSTD-N------------TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred EEEEECC-C------------EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 8888754 1 57889886531 012322211111111112344678899999998654
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.40 E-value=15 Score=35.94 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=45.9
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeec-CCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc----cccCcce
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVL-PNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS----ERRWYAT 172 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l-~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~----~~R~y~s 172 (557)
.+..||+.+++.+...... ..+.++. .+|++|+.... ...++|+. +.+++.+.. .. ....-.-
T Consensus 23 ~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~-----~~~~~d~~---~g~~~~~~~-~~~~~~~~~~~ND 90 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVADSG-----GIAVVDPD---TGKVTVLAD-LPDGGVPFNRPND 90 (246)
T ss_dssp EEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEETT-----CEEEEETT---TTEEEEEEE-EETTCSCTEEEEE
T ss_pred EEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEEcC-----ceEEEecC---CCcEEEEee-ccCCCcccCCCce
Confidence 3778999998776544332 3344555 68999988653 35677998 778877654 32 1111234
Q ss_pred EEEecCCcEEEE
Q 041651 173 NQILPDGRIIII 184 (557)
Q Consensus 173 ~~~L~dG~vyvv 184 (557)
+++-++|++|+.
T Consensus 91 ~~vd~~G~ly~t 102 (246)
T PF08450_consen 91 VAVDPDGNLYVT 102 (246)
T ss_dssp EEE-TTS-EEEE
T ss_pred EEEcCCCCEEEE
Confidence 566678888874
No 72
>PRK13684 Ycf48-like protein; Provisional
Probab=90.89 E-value=22 Score=36.94 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=44.1
Q ss_pred CcceeecCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCccc--ccccce
Q 041651 329 PSWVMEEMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRM--YHSSAI 406 (557)
Q Consensus 329 ~~W~~~~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~--yhs~a~ 406 (557)
.+|+..+.+..+...+++..++|+++++|.. |. .++. .+|.|.+|+....-..... .++. .
T Consensus 204 ~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~--G~-------------~~~~-s~d~G~sW~~~~~~~~~~~~~l~~v-~ 266 (334)
T PRK13684 204 TAWTPHQRNSSRRLQSMGFQPDGNLWMLARG--GQ-------------IRFN-DPDDLESWSKPIIPEITNGYGYLDL-A 266 (334)
T ss_pred CeEEEeeCCCcccceeeeEcCCCCEEEEecC--CE-------------EEEc-cCCCCCccccccCCccccccceeeE-E
Confidence 4798875555566666667789999998753 21 2221 3566779986432101111 2222 3
Q ss_pred eccCCcEEEecCC
Q 041651 407 LLTDGRVLIGGSN 419 (557)
Q Consensus 407 llpdG~V~v~GG~ 419 (557)
..++++++++|..
T Consensus 267 ~~~~~~~~~~G~~ 279 (334)
T PRK13684 267 YRTPGEIWAGGGN 279 (334)
T ss_pred EcCCCCEEEEcCC
Confidence 3568899998865
No 73
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.50 E-value=6.8 Score=40.97 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=42.9
Q ss_pred eeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccCCCcccccCeecCCCc
Q 041651 51 AMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGT 130 (557)
Q Consensus 51 ~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~ 130 (557)
.++-+.+.+.||++++.. | .+.+||++|.....++.+....+...++-.+++
T Consensus 68 ~~~F~al~gskIv~~d~~-----------~-----------------~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~ 119 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQS-----------G-----------------RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDK 119 (342)
T ss_pred eeEEEEecCCeEEEEcCC-----------C-----------------CeEEEECCCCeEeccCCCCCCCcceEEEEeCCe
Confidence 455555568899988642 2 267999999999988877654444455656888
Q ss_pred EEEEcCCC
Q 041651 131 LVQSGGYN 138 (557)
Q Consensus 131 i~v~GG~~ 138 (557)
||++....
T Consensus 120 LY~m~~~~ 127 (342)
T PF07893_consen 120 LYAMDRSP 127 (342)
T ss_pred EEEeeccC
Confidence 99998753
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.40 E-value=16 Score=35.83 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=75.1
Q ss_pred EEEEECCCCcEEECccC-----CCcccccCeecCCCcEEEEcCCCC---CC--CeEEEEcCCCCCCCceecCCccccccc
Q 041651 99 SILYDVATNAYRPLMVQ-----TDTWCSSGSVLPNGTLVQSGGYND---GD--HVVRTFTPCDDDQCDWIELPQHLSERR 168 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~-----~~~~c~~~~~l~dG~i~v~GG~~~---g~--~~v~~ydp~~~~t~~W~~~~~~m~~~R 168 (557)
..++|+.+++++.+... ...++...++.++|++|+.--... .. ..+.++++. .+...+...|..+
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~~~~~p- 136 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVADGLGFP- 136 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEEEESSE-
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEecCcccc-
Confidence 34669999999887653 345677788899999998642211 11 357888886 2333332223322
Q ss_pred CcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceE-EEeeCCcEEEE--EcCceE
Q 041651 169 WYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFV-HLLPDGNLFIF--ANTRSI 245 (557)
Q Consensus 169 ~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~-~~~~~G~ifv~--gg~~~~ 245 (557)
.+.+.-+||+.+.+.-+....+..|+....+ ..+......... ....-+|-. .+-.+|+||+. ++....
T Consensus 137 --NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~---~~~~~~~~~~~~---~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 137 --NGIAFSPDGKTLYVADSFNGRIWRFDLDADG---GELSNRRVFIDF---PGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp --EEEEEETTSSEEEEEETTTTEEEEEEEETTT---CCEEEEEEEEE----SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred --cceEECCcchheeecccccceeEEEeccccc---cceeeeeeEEEc---CCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 3566677887554433333334444221000 111110000000 001123544 34468999998 567789
Q ss_pred EEeCCCCeEEEEe
Q 041651 246 LFDYKQNKVLKEY 258 (557)
Q Consensus 246 ~yDp~t~~W~~~~ 258 (557)
+|||. ++-...+
T Consensus 209 ~~~p~-G~~~~~i 220 (246)
T PF08450_consen 209 VFDPD-GKLLREI 220 (246)
T ss_dssp EEETT-SCEEEEE
T ss_pred EECCC-ccEEEEE
Confidence 99999 4433334
No 75
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.37 E-value=20 Score=35.48 Aligned_cols=249 Identities=12% Similarity=0.183 Sum_probs=116.1
Q ss_pred EEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceE-EEec
Q 041651 99 SILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATN-QILP 177 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~-~~L~ 177 (557)
+.+|-..|+.-..--.-.+..-......+|++.++++|+ ..+++||.. ++.=..+.. ....+-.-++ ..-.
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~----qhvRlyD~~---S~np~Pv~t-~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN----QHVRLYDLN---SNNPNPVAT-FEGHTKNVTAVGFQC 93 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC----CeeEEEEcc---CCCCCceeE-EeccCCceEEEEEee
Confidence 445555555543322222222222345679999999997 469999987 443111111 1122222222 2333
Q ss_pred CCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceE--EEeeCCcEEEEEcC--ceEEEeCCCCe
Q 041651 178 DGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFV--HLLPDGNLFIFANT--RSILFDYKQNK 253 (557)
Q Consensus 178 dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~--~~~~~G~ifv~gg~--~~~~yDp~t~~ 253 (557)
|||-...||.++ ++.+|...+ ..--+.+... -|.. ++-|+.--++.|.+ ..++||..++.
T Consensus 94 dgrWMyTgseDg-t~kIWdlR~----~~~qR~~~~~-----------spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 94 DGRWMYTGSEDG-TVKIWDLRS----LSCQRNYQHN-----------SPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred cCeEEEecCCCc-eEEEEeccC----cccchhccCC-----------CCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 899988888765 344441100 0000000000 1222 22234434445554 36789999987
Q ss_pred EEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCC--Ccc
Q 041651 254 VLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHAN--PSW 331 (557)
Q Consensus 254 W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~--~~W 331 (557)
-..+ .+|.. -.. -...+++ | +|+.++.+-.. ..|.+.++.... ..-
T Consensus 158 c~~~--liPe~--~~~-i~sl~v~-~----------dgsml~a~nnk----------------G~cyvW~l~~~~~~s~l 205 (311)
T KOG0315|consen 158 CTHE--LIPED--DTS-IQSLTVM-P----------DGSMLAAANNK----------------GNCYVWRLLNHQTASEL 205 (311)
T ss_pred cccc--cCCCC--Ccc-eeeEEEc-C----------CCcEEEEecCC----------------ccEEEEEccCCCccccc
Confidence 6532 24432 111 1122332 2 66766544321 233333333210 011
Q ss_pred eee---cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceec
Q 041651 332 VME---EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILL 408 (557)
Q Consensus 332 ~~~---~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~ll 408 (557)
+.. .|......- ...-||+|.++.-+++. ++.+|+-++-. .-+..-.......+- ++.-
T Consensus 206 ~P~~k~~ah~~~il~-C~lSPd~k~lat~ssdk-------------tv~iwn~~~~~--kle~~l~gh~rWvWd--c~FS 267 (311)
T KOG0315|consen 206 EPVHKFQAHNGHILR-CLLSPDVKYLATCSSDK-------------TVKIWNTDDFF--KLELVLTGHQRWVWD--CAFS 267 (311)
T ss_pred eEhhheecccceEEE-EEECCCCcEEEeecCCc-------------eEEEEecCCce--eeEEEeecCCceEEe--eeec
Confidence 111 333333333 35679999999887652 56777655430 000000111112222 3344
Q ss_pred cCCcEEEecCCCC
Q 041651 409 TDGRVLIGGSNPH 421 (557)
Q Consensus 409 pdG~V~v~GG~~~ 421 (557)
.||+.+|+|+.++
T Consensus 268 ~dg~YlvTassd~ 280 (311)
T KOG0315|consen 268 ADGEYLVTASSDH 280 (311)
T ss_pred cCccEEEecCCCC
Confidence 5999999999764
No 76
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=90.27 E-value=0.33 Score=51.76 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=81.4
Q ss_pred CCCCCCCceEEccC----------CcccceeEEEEee--CCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceE
Q 041651 32 PYAGSQGEWNLLHE----------SIGISAMHMQLLH--DNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHS 99 (557)
Q Consensus 32 ~~~~~~g~W~~~~~----------~~~~~~~h~~~~~--~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 99 (557)
..++-.-+|...+. .+..+.-|-.|.. +.-||++||.+ |.. ..+..
T Consensus 233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~---------------------~l~DF 290 (723)
T KOG2437|consen 233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQ---------------------DLADF 290 (723)
T ss_pred hcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cch---------------------hHHHH
Confidence 33455566776542 1344555655554 45999999974 211 12346
Q ss_pred EEEECCCCcEEECccC----CCcccccCeec-CCCcEEEEcCCCC--------CCCeEEEEcCCCCCCCceecCCccccc
Q 041651 100 ILYDVATNAYRPLMVQ----TDTWCSSGSVL-PNGTLVQSGGYND--------GDHVVRTFTPCDDDQCDWIELPQHLSE 166 (557)
Q Consensus 100 ~~yDp~t~~w~~l~~~----~~~~c~~~~~l-~dG~i~v~GG~~~--------g~~~v~~ydp~~~~t~~W~~~~~~m~~ 166 (557)
+.|+-..+.|+.+..- -.+.|+-.+.. ...++|+.|-+.+ +...+|.||-. ++.|.-+. |..
T Consensus 291 W~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~---~~~W~~ls--~dt 365 (723)
T KOG2437|consen 291 WAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID---TNTWMLLS--EDT 365 (723)
T ss_pred HhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC---CceeEEec--ccc
Confidence 7899999999987642 24567644332 2358999986542 34678999998 89998763 432
Q ss_pred c-------cCcceEEEecCCc--EEEEcCcC
Q 041651 167 R-------RWYATNQILPDGR--IIIIGGRR 188 (557)
Q Consensus 167 ~-------R~y~s~~~L~dG~--vyvvGG~~ 188 (557)
. -.-|.+++. ..| |||.||+.
T Consensus 366 ~~dGGP~~vfDHqM~Vd-~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 366 AADGGPKLVFDHQMCVD-SEKHMIYVFGGRI 395 (723)
T ss_pred cccCCcceeecceeeEe-cCcceEEEecCee
Confidence 2 345666665 345 99999974
No 77
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=89.88 E-value=0.28 Score=52.30 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=84.5
Q ss_pred CCCCCCCceEEccC---CcccceeEEEEeeCC--eEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCC
Q 041651 32 PYAGSQGEWNLLHE---SIGISAMHMQLLHDN--RVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVAT 106 (557)
Q Consensus 32 ~~~~~~g~W~~~~~---~~~~~~~h~~~~~~g--kv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t 106 (557)
.|.-..+.|.-... .++.++-|-.|.+.. |+|++|.+-. -+. +. +++.-...+.||..+
T Consensus 292 ~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~-sS~------r~---------~~s~RsDfW~FDi~~ 355 (723)
T KOG2437|consen 292 AYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLD-SSV------RN---------SKSLRSDFWRFDIDT 355 (723)
T ss_pred hhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccc-ccc------cc---------ccccccceEEEecCC
Confidence 34445566987542 467888898888755 9999998741 110 00 122334678999999
Q ss_pred CcEEECccCC-------CcccccCeecCC-CcEEEEcCCCC-----CCCeEEEEcCCCCCCCceecCCc---------cc
Q 041651 107 NAYRPLMVQT-------DTWCSSGSVLPN-GTLVQSGGYND-----GDHVVRTFTPCDDDQCDWIELPQ---------HL 164 (557)
Q Consensus 107 ~~w~~l~~~~-------~~~c~~~~~l~d-G~i~v~GG~~~-----g~~~v~~ydp~~~~t~~W~~~~~---------~m 164 (557)
+.|.-+...+ ..|-+..++..+ |.|||+||..- .......||.+ ...|..+.. +-
T Consensus 356 ~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~---~~~w~~l~e~~~~~~~vvE~ 432 (723)
T KOG2437|consen 356 NTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQ---CQTWKLLREDSCNAGPVVED 432 (723)
T ss_pred ceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecC---CccHHHHHHHHhhcCcchhH
Confidence 9999886432 234444444433 45999999741 12356788887 677876531 12
Q ss_pred ccccCcceEEEecCC-cEEEEcCcC
Q 041651 165 SERRWYATNQILPDG-RIIIIGGRR 188 (557)
Q Consensus 165 ~~~R~y~s~~~L~dG-~vyvvGG~~ 188 (557)
...|-.+++...+|+ +.|+.||..
T Consensus 433 ~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 433 IQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred HHHHHHHHHHhcCCCCeEEeccCcc
Confidence 234666666666655 556656543
No 78
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.84 E-value=2.1 Score=43.38 Aligned_cols=120 Identities=13% Similarity=0.238 Sum_probs=74.6
Q ss_pred hhcceecccCCCCCCCCCCCCCCCceEEccCCcccc-eeEEEEe-eCCeEEEEeecccCCCcccCCCCccccCCCCcccc
Q 041651 15 LSFHFIFVPLIPSQVLPPYAGSQGEWNLLHESIGIS-AMHMQLL-HDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLH 92 (557)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~~-~~h~~~~-~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~ 92 (557)
++.+|-...-.++..+-.||....+|..+... +. .++.... .+++||+.|....+ +.
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~--------~~----------- 61 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLN--------GT----------- 61 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEEC--------CC-----------
Confidence 45566666667888999999999999997643 32 2333333 46777777654321 10
Q ss_pred ccCcceEEEEECCCCcEEECccCC-----CcccccCeecCCC-cEEEEcCCCCCCCeEEEEcCCCCCCCceecCCc
Q 041651 93 TDCTAHSILYDVATNAYRPLMVQT-----DTWCSSGSVLPNG-TLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQ 162 (557)
Q Consensus 93 ~~~~~~~~~yDp~t~~w~~l~~~~-----~~~c~~~~~l~dG-~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~ 162 (557)
.......||..+++|+.+.... ...-.-.....|+ ++++.|....+...+..|| ..+|..+..
T Consensus 62 --~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d-----Gs~W~~i~~ 130 (281)
T PF12768_consen 62 --NSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD-----GSSWSSIGS 130 (281)
T ss_pred --CceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc-----CCceEeccc
Confidence 1235789999999999887632 1111111112244 5666666555667788887 457987753
No 79
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=89.27 E-value=27 Score=35.36 Aligned_cols=165 Identities=15% Similarity=0.216 Sum_probs=89.8
Q ss_pred EEeeCCcEEEEEc--CceEEEeCCCCeEE--EEe-cCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCcc
Q 041651 229 HLLPDGNLFIFAN--TRSILFDYKQNKVL--KEY-PEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNAS 303 (557)
Q Consensus 229 ~~~~~G~ifv~gg--~~~~~yDp~t~~W~--~~~-p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~ 303 (557)
...|.|+..+.|| +..-+|+.++..=. ..+ -.+++ .+.|- ...-.++ ++.|+..-|
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g--Htgyl--ScC~f~d----------D~~ilT~SG----- 164 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG--HTGYL--SCCRFLD----------DNHILTGSG----- 164 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccccccceeeeeecC--cccee--EEEEEcC----------CCceEecCC-----
Confidence 3468899888888 44678998754111 001 11233 24443 2223322 556665434
Q ss_pred ccccccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcC-CCeEEEEcCcCCCCCCcccCCCCccccEEEcC
Q 041651 304 FALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLP-NGDVIIINGAQLGTAGWELARGPMTRPIIYRP 381 (557)
Q Consensus 304 ~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lp-dG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP 381 (557)
..+|...|++. .+=... .-..+-++.- -+.| +++.||.||.+. .+.+||-
T Consensus 165 ------------D~TCalWDie~--g~~~~~f~GH~gDV~sl-sl~p~~~ntFvSg~cD~-------------~aklWD~ 216 (343)
T KOG0286|consen 165 ------------DMTCALWDIET--GQQTQVFHGHTGDVMSL-SLSPSDGNTFVSGGCDK-------------SAKLWDV 216 (343)
T ss_pred ------------CceEEEEEccc--ceEEEEecCCcccEEEE-ecCCCCCCeEEeccccc-------------ceeeeec
Confidence 23566677664 222222 3333334432 3457 999999999862 4578998
Q ss_pred CCCCCCceEecCCCCCcccccccceeccCCcEEEecCCCCcccccccccCCCcceEEEEcCCCCCCc
Q 041651 382 SEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYLSAE 448 (557)
Q Consensus 382 ~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~~~ 448 (557)
... .=...=.-+..- -.++...|+|--+++|+++..---|+ .-+...+++|+++-..-|
T Consensus 217 R~~---~c~qtF~ghesD--INsv~ffP~G~afatGSDD~tcRlyD---lRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 217 RSG---QCVQTFEGHESD--INSVRFFPSGDAFATGSDDATCRLYD---LRADQELAVYSHDSIICG 275 (343)
T ss_pred cCc---ceeEeecccccc--cceEEEccCCCeeeecCCCceeEEEe---ecCCcEEeeeccCcccCC
Confidence 776 322211111111 13456779999999999754311111 112447899998776544
No 80
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.67 E-value=46 Score=36.19 Aligned_cols=133 Identities=16% Similarity=0.246 Sum_probs=73.9
Q ss_pred EEEEECCCCc--EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCce-ecCCcccccccCcceEEE
Q 041651 99 SILYDVATNA--YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDW-IELPQHLSERRWYATNQI 175 (557)
Q Consensus 99 ~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W-~~~~~~m~~~R~y~s~~~ 175 (557)
+..|+..+.+ -......+...+...++-+||++++.|..+ ..+++||... ...= ..+. .+.-+-.+++.
T Consensus 183 i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D---~tiriwd~~~--~~~~~~~l~---gH~~~v~~~~f 254 (456)
T KOG0266|consen 183 IRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD---KTLRIWDLKD--DGRNLKTLK---GHSTYVTSVAF 254 (456)
T ss_pred EEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC---ceEEEeeccC--CCeEEEEec---CCCCceEEEEe
Confidence 5566664433 111113466677778888999977777653 6899999841 1121 1121 23333466777
Q ss_pred ecCCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCc--eEEEeCCCC
Q 041651 176 LPDGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTR--SILFDYKQN 252 (557)
Q Consensus 176 L~dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~--~~~yDp~t~ 252 (557)
-++|+.++.|+.++ ++-+| ... + + ....+....+. --.+..-++|++++.+..+ ..+||..+.
T Consensus 255 ~p~g~~i~Sgs~D~-tvriWd~~~--~----~--~~~~l~~hs~~-----is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 255 SPDGNLLVSGSDDG-TVRIWDVRT--G----E--CVRKLKGHSDG-----ISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred cCCCCEEEEecCCC-cEEEEeccC--C----e--EEEeeeccCCc-----eEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 77897877777654 55566 321 1 1 11111111110 0122334588888888643 578999988
Q ss_pred e
Q 041651 253 K 253 (557)
Q Consensus 253 ~ 253 (557)
.
T Consensus 321 ~ 321 (456)
T KOG0266|consen 321 S 321 (456)
T ss_pred c
Confidence 7
No 81
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=85.83 E-value=15 Score=38.40 Aligned_cols=121 Identities=15% Similarity=0.080 Sum_probs=71.2
Q ss_pred cCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEcCcCCC---------ceeEe-
Q 041651 126 LPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIGGRRQF---------NYEFY- 195 (557)
Q Consensus 126 l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvGG~~~~---------~~E~y- 195 (557)
+.+.+|+.++.. ..+-+||+. +..-..+|. |..+..++-+..+ +|++||+...... ..|.+
T Consensus 74 l~gskIv~~d~~----~~t~vyDt~---t~av~~~P~-l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 74 LHGSKIVAVDQS----GRTLVYDTD---TRAVATGPR-LHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred ecCCeEEEEcCC----CCeEEEECC---CCeEeccCC-CCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEec
Confidence 357788888654 347899999 777777775 8888888877777 6789999876321 45554
Q ss_pred --cCCC--CCCCCCceeeecccccccccccCCcc-ceEEEeeCC-cEEEEEc-C--ceEEEeCCCCeEEE
Q 041651 196 --PKSD--EDLSFPQTFMLHFLLETRDYAENNLY-PFVHLLPDG-NLFIFAN-T--RSILFDYKQNKVLK 256 (557)
Q Consensus 196 --P~~~--~~~~~~~w~~~~~l~~t~d~~~~~~y-p~~~~~~~G-~ifv~gg-~--~~~~yDp~t~~W~~ 256 (557)
+... .......|..+|...-..+. ....+ =..+++.|| .||+... . ....||..+.+|.+
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~PPf~~~~-~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPPPPFVRDR-RYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred cccccccccCCCcceEEcCCCCCccccC-CcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceee
Confidence 2100 00112245555442211110 00000 112333355 5999554 3 48899999999985
No 82
>PTZ00421 coronin; Provisional
Probab=85.31 E-value=64 Score=35.56 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=16.3
Q ss_pred eecCC-CcEEEEcCCCCCCCeEEEEcCC
Q 041651 124 SVLPN-GTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 124 ~~l~d-G~i~v~GG~~~g~~~v~~ydp~ 150 (557)
.+-++ +.++++||.+ ..+++||..
T Consensus 132 ~f~P~~~~iLaSgs~D---gtVrIWDl~ 156 (493)
T PTZ00421 132 SFHPSAMNVLASAGAD---MVVNVWDVE 156 (493)
T ss_pred EeCcCCCCEEEEEeCC---CEEEEEECC
Confidence 34444 3688888763 568889887
No 83
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.31 E-value=50 Score=34.32 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=47.4
Q ss_pred CceEEccCC--cccceeEEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCC-cEEECc-
Q 041651 38 GEWNLLHES--IGISAMHMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATN-AYRPLM- 113 (557)
Q Consensus 38 g~W~~~~~~--~~~~~~h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~-~w~~l~- 113 (557)
|+.+.+... .+..+.|.++-++++.+++.-+.. | .+.+|+...+ +.....
T Consensus 74 g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~---------g-----------------~v~v~~l~~~g~l~~~~~ 127 (345)
T PF10282_consen 74 GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG---------G-----------------SVSVFPLDDDGSLGEVVQ 127 (345)
T ss_dssp TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT---------T-----------------EEEEEEECTTSEEEEEEE
T ss_pred ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC---------C-----------------eEEEEEccCCcccceeee
Confidence 677665431 355667888888888877765431 1 3556665542 222211
Q ss_pred ------------cCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 114 ------------VQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 114 ------------~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
.+....++...+.+||+.+.+-- -|.+.+.+|+..
T Consensus 128 ~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d--lG~D~v~~~~~~ 174 (345)
T PF10282_consen 128 TVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD--LGADRVYVYDID 174 (345)
T ss_dssp EEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE--TTTTEEEEEEE-
T ss_pred ecccCCCCCcccccccccceeEEECCCCCEEEEEe--cCCCEEEEEEEe
Confidence 11233455566778887655532 245789988876
No 84
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=81.50 E-value=6.1 Score=39.38 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=65.7
Q ss_pred CceEEccCC-cccceeEEEEe--eCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECC-CCcEEECc
Q 041651 38 GEWNLLHES-IGISAMHMQLL--HDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVA-TNAYRPLM 113 (557)
Q Consensus 38 g~W~~~~~~-~~~~~~h~~~~--~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~-t~~w~~l~ 113 (557)
-+|+..... ......+..++ ++|+++++-+.. +. + . ....+... -.+|+...
T Consensus 145 ~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~-------~-~---------------~~~~~S~D~G~TWs~~~ 200 (275)
T PF13088_consen 145 KTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN-------D-D---------------IYISRSTDGGRTWSPPQ 200 (275)
T ss_dssp SSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS-------T-E---------------EEEEEESSTTSS-EEEE
T ss_pred ceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC-------C-c---------------EEEEEECCCCCcCCCce
Confidence 449876532 12245565555 699999998763 11 1 0 01122222 23576543
Q ss_pred c--CCCcccc-cCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccc----cCcceEEEecCCcEEE
Q 041651 114 V--QTDTWCS-SGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSER----RWYATNQILPDGRIII 183 (557)
Q Consensus 114 ~--~~~~~c~-~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~----R~y~s~~~L~dG~vyv 183 (557)
. .++..|. ....+.+|+++++....++...+.++=-.++ ..+|..... +... =.|++++.+.||+|+|
T Consensus 201 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~-g~tW~~~~~-i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 201 PTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDG-GKTWSRPKT-IDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTT-CEEEEEEEE-EEEEE-CCEEEEEEEEEETTEEEE
T ss_pred ecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCC-CCcCCccEE-EeCCCCCcEECCeeEEeCCCcCCC
Confidence 2 2222222 2234678999998884333334444322222 678987543 4433 3699999999999986
No 85
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.22 E-value=1.1e+02 Score=35.08 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=34.8
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
....+|+..++++.--...+-.+-.+.+.-+||.++++|+.+ .+|.+||..
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD---gKVKvWn~~ 380 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED---GKVKVWNTQ 380 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC---CcEEEEecc
Confidence 356778777766643333333344456677899999999974 578888876
No 86
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.14 E-value=41 Score=32.19 Aligned_cols=140 Identities=14% Similarity=0.245 Sum_probs=70.6
Q ss_pred eeCCcEEEEE-cCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCcccccccc
Q 041651 231 LPDGNLFIFA-NTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQ 309 (557)
Q Consensus 231 ~~~G~ifv~g-g~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~ 309 (557)
..+|++|+.. .....+||.++++...... ++. +.. ..-++ . +++||+....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~---~~~---~~~~~-~----------~~~v~v~~~~---------- 85 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPG---PIS---GAPVV-D----------GGRVYVGTSD---------- 85 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEE-CSS---CGG---SGEEE-E----------TTEEEEEETT----------
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEee-ccc---ccc---ceeee-c----------ccccccccce----------
Confidence 3577788873 3456789998876442222 222 111 11121 1 7788876531
Q ss_pred ccccccCCceEEEEecCCCCccee-e-cCCCCceee-eEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCC
Q 041651 310 GVFIRAISTCGRLVVSHANPSWVM-E-EMPLPRVMG-DMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTS 386 (557)
Q Consensus 310 ~~~~pa~~s~~~~d~~~~~~~W~~-~-~M~~~R~~~-~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g 386 (557)
+.+..+|..+....|+. . ..+..+... ....+-++++|+ +... ..+.++|+++..
T Consensus 86 -------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------g~l~~~d~~tG~- 143 (238)
T PF13360_consen 86 -------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV-GTSS-------------GKLVALDPKTGK- 143 (238)
T ss_dssp -------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE-EETC-------------SEEEEEETTTTE-
T ss_pred -------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEE-Eecc-------------CcEEEEecCCCc-
Confidence 23455665555567984 4 323222111 112222445554 4322 156899998762
Q ss_pred CceEecCCCCCc-c----cc-cccceeccCCcEEEecCCC
Q 041651 387 RRFSVMEPSTRP-R----MY-HSSAILLTDGRVLIGGSNP 420 (557)
Q Consensus 387 ~~W~~~~~~~~~-R----~y-hs~a~llpdG~V~v~GG~~ 420 (557)
..|+.-...+.. - .. .....++.+|+||+..+..
T Consensus 144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 144 LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 257753333221 0 00 1123445578999988764
No 87
>PTZ00421 coronin; Provisional
Probab=80.13 E-value=66 Score=35.45 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=33.1
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
.+.+||..+++-...-..+.....+.+.-+||.++++|+.+ +.+++||+.
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D---g~IrIwD~r 198 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD---KKLNIIDPR 198 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC---CEEEEEECC
Confidence 47899998775432211222223334556799999999863 579999998
No 88
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=78.55 E-value=30 Score=34.35 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=71.8
Q ss_pred EEEEC-CCCcEEECccC-CC-cccccC-eecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCc-ccccccCcceEE
Q 041651 100 ILYDV-ATNAYRPLMVQ-TD-TWCSSG-SVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQ-HLSERRWYATNQ 174 (557)
Q Consensus 100 ~~yDp-~t~~w~~l~~~-~~-~~c~~~-~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~-~m~~~R~y~s~~ 174 (557)
..|.. .-.+|+..... .. ..|... +.+.||+|+++--.. +......+--.++ ..+|++... .++.......+.
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~-G~TWs~~~~~~~~~~~~~~~~~ 214 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDG-GRTWSPPQPTNLPNPNSSISLV 214 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SSTEEEEEEESST-TSS-EEEEEEECSSCCEEEEEE
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCC-CCcCCCceecccCcccCCceEE
Confidence 33443 44569877654 22 344433 346899999886442 1123333333322 578987431 255555556667
Q ss_pred EecCCcEEEEcCcCC--CceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEE
Q 041651 175 ILPDGRIIIIGGRRQ--FNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFI 238 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~--~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv 238 (557)
.+.+|+++++..... ....++ ... . ..+|.....+.... .....||.+..+.||+|++
T Consensus 215 ~~~~g~~~~~~~~~~~r~~l~l~~S~D-~---g~tW~~~~~i~~~~--~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 215 RLSDGRLLLVYNNPDGRSNLSLYVSED-G---GKTWSRPKTIDDGP--NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ECTTSEEEEEEECSSTSEEEEEEEECT-T---CEEEEEEEEEEEEE---CCEEEEEEEEEETTEEEE
T ss_pred EcCCCCEEEEEECCCCCCceEEEEEeC-C---CCcCCccEEEeCCC--CCcEECCeeEEeCCCcCCC
Confidence 788999999988422 123333 331 1 34676432222211 1234699999999999986
No 89
>PTZ00420 coronin; Provisional
Probab=78.21 E-value=61 Score=36.38 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=67.0
Q ss_pred eEEEEECCCCcEE-ECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccC-cceEEE
Q 041651 98 HSILYDVATNAYR-PLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRW-YATNQI 175 (557)
Q Consensus 98 ~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~-y~s~~~ 175 (557)
.+.+||..+++-. .+. ......+.+.-++|.++++++.+ +.+++||+. +.+ .+.. +..... ..+.++
T Consensus 149 tIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D---~~IrIwD~R---sg~--~i~t-l~gH~g~~~s~~v 217 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVG---KHMHIIDPR---KQE--IASS-FHIHDGGKNTKNI 217 (568)
T ss_pred eEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecC---CEEEEEECC---CCc--EEEE-EecccCCceeEEE
Confidence 4778999877532 121 11122334556799999988753 579999998 432 1111 211110 011111
Q ss_pred -e----cCCcEEEEcCcCC---CceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEc--Cce
Q 041651 176 -L----PDGRIIIIGGRRQ---FNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFAN--TRS 244 (557)
Q Consensus 176 -L----~dG~vyvvGG~~~---~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg--~~~ 244 (557)
+ +|+..++.+|.+. ..+-+| .... ...... ...+.....+.|+.. -.+|.+|+.|. ...
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~-----~~pl~~----~~ld~~~~~L~p~~D-~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT-----TSALVT----MSIDNASAPLIPHYD-ESTGLIYLIGKGDGNC 287 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC-----CCceEE----EEecCCccceEEeee-CCCCCEEEEEECCCeE
Confidence 1 4777777777654 246666 3310 111100 001111111222222 34689998884 346
Q ss_pred EEEeCCCCe
Q 041651 245 ILFDYKQNK 253 (557)
Q Consensus 245 ~~yDp~t~~ 253 (557)
.+|+...+.
T Consensus 288 r~~e~~~~~ 296 (568)
T PTZ00420 288 RYYQHSLGS 296 (568)
T ss_pred EEEEccCCc
Confidence 788887664
No 90
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=77.28 E-value=92 Score=32.01 Aligned_cols=244 Identities=11% Similarity=0.118 Sum_probs=99.1
Q ss_pred CCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccc-cCcceEEEecCCcEEE
Q 041651 105 ATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSER-RWYATNQILPDGRIII 183 (557)
Q Consensus 105 ~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~-R~y~s~~~L~dG~vyv 183 (557)
+.+.|+.+...++.......+.-+.+-+++|-+. .+|-..++ ..+|......+..+ ......+...+.+.||
T Consensus 4 ~~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g------~il~T~DG-G~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 4 SGNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYG------TILKTTDG-GKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp SS--EEEEE-S-SS-EEEEEESSSS-EEEEETTT------EEEEESST-TSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred cCCCcEEeecCCCCceEEEEEecCCEEEEEecCC------EEEEECCC-CccccccccCCCccceeeEEEEEecCCceEE
Confidence 3567888876655555556666567888887541 23333322 57898865323332 2333334444788898
Q ss_pred EcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccce-EEEeeCCcEEEEEcCceEEEe--CCCCeEEEEec
Q 041651 184 IGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPF-VHLLPDGNLFIFANTRSILFD--YKQNKVLKEYP 259 (557)
Q Consensus 184 vGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~-~~~~~~G~ifv~gg~~~~~yD--p~t~~W~~~~p 259 (557)
+|-.. -++ ... . ..+|..++.... .+. -++ ...+.++.+.+++.... +|- -...+|.....
T Consensus 77 vG~~g----~ll~T~D-g---G~tW~~v~l~~~----lpg--s~~~i~~l~~~~~~l~~~~G~-iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 77 VGEPG----LLLHTTD-G---GKTWERVPLSSK----LPG--SPFGITALGDGSAELAGDRGA-IYRTTDGGKTWQAVVS 141 (302)
T ss_dssp EEETT----EEEEESS-T---TSS-EE----TT-----SS---EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE-
T ss_pred EcCCc----eEEEecC-C---CCCcEEeecCCC----CCC--CeeEEEEcCCCcEEEEcCCCc-EEEeCCCCCCeeEccc
Confidence 87421 123 221 1 357875542111 011 122 33445667777665432 343 23468874332
Q ss_pred CCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceeecCCCC
Q 041651 260 EIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLP 339 (557)
Q Consensus 260 ~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~~M~~~ 339 (557)
...+ .. .....++ +|++++++-.. .-+. . .|+. ...|+.-..+..
T Consensus 142 ~~~g----s~---~~~~r~~----------dG~~vavs~~G-~~~~-----s----------~~~G--~~~w~~~~r~~~ 186 (302)
T PF14870_consen 142 ETSG----SI---NDITRSS----------DGRYVAVSSRG-NFYS-----S----------WDPG--QTTWQPHNRNSS 186 (302)
T ss_dssp S--------E---EEEEE-T----------TS-EEEEETTS-SEEE-----E----------E-TT---SS-EEEE--SS
T ss_pred CCcc----ee---EeEEECC----------CCcEEEEECcc-cEEE-----E----------ecCC--CccceEEccCcc
Confidence 1110 00 0111111 78877777532 1121 0 1111 136888766555
Q ss_pred ceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCC-cccc-cccceeccCCcEEEec
Q 041651 340 RVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTR-PRMY-HSSAILLTDGRVLIGG 417 (557)
Q Consensus 340 R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~-~R~y-hs~a~llpdG~V~v~G 417 (557)
|..-++..-+|+.|+++. . |.. +..=| ..+.+.+|++-. .++ .+.| +-...-.+++.++++|
T Consensus 187 ~riq~~gf~~~~~lw~~~-~--Gg~-----------~~~s~-~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-R--GGQ-----------IQFSD-DPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-T--TTE-----------EEEEE--TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEE
T ss_pred ceehhceecCCCCEEEEe-C--CcE-----------EEEcc-CCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEe
Confidence 555556667999998875 2 211 11111 122223777621 222 2222 2223445789999999
Q ss_pred CCCC
Q 041651 418 SNPH 421 (557)
Q Consensus 418 G~~~ 421 (557)
|...
T Consensus 251 g~G~ 254 (302)
T PF14870_consen 251 GSGT 254 (302)
T ss_dssp STT-
T ss_pred CCcc
Confidence 9753
No 91
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=76.42 E-value=96 Score=32.97 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=48.8
Q ss_pred EEEEECCCCcEEECcc--CCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCccccc--ccCcceEE
Q 041651 99 SILYDVATNAYRPLMV--QTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSE--RRWYATNQ 174 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~--~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~--~R~y~s~~ 174 (557)
+.+|+..+. +++.. .+..+-+..++-++|+.+.++-++ .+-++||.. +.+ ++ -|++ .+.-++.+
T Consensus 243 vklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD---~tWRlWD~~---tk~--El--L~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 243 VKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFD---STWRLWDLE---TKS--EL--LLQEGHSKGVFSIA 310 (459)
T ss_pred eeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccc---cchhhcccc---cch--hh--HhhcccccccceeE
Confidence 556666543 34433 234556666777899999887763 455678876 322 21 1333 34456666
Q ss_pred EecCCcEEEEcCcCC
Q 041651 175 ILPDGRIIIIGGRRQ 189 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~ 189 (557)
.=+||.+.+.||.+.
T Consensus 311 f~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDS 325 (459)
T ss_pred ecCCCceeeccCccc
Confidence 667999999999764
No 92
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.94 E-value=1.1e+02 Score=32.76 Aligned_cols=122 Identities=12% Similarity=0.018 Sum_probs=64.7
Q ss_pred EEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCC-----ceecCCccccccc-CcceEE
Q 041651 101 LYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQC-----DWIELPQHLSERR-WYATNQ 174 (557)
Q Consensus 101 ~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~-----~W~~~~~~m~~~R-~y~s~~ 174 (557)
.+|.....|+++.......-.+.....||.++++|... .+..-+-. .. +|.+.. ++..+ ...++.
T Consensus 264 s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G----~l~~S~d~---G~~~~~~~f~~~~--~~~~~~~l~~v~ 334 (398)
T PLN00033 264 TWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG----GLYVSKGT---GLTEEDFDFEEAD--IKSRGFGILDVG 334 (398)
T ss_pred ecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc----eEEEecCC---CCcccccceeecc--cCCCCcceEEEE
Confidence 44555545888876655555566667899999988542 12111111 22 455542 33223 233445
Q ss_pred EecCCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCce
Q 041651 175 ILPDGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRS 244 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~ 244 (557)
...|+.++++|.... ++ ... . ..+|...+.... .+.++| .+....+++.|+.|.+..
T Consensus 335 ~~~d~~~~a~G~~G~----v~~s~D-~---G~tW~~~~~~~~----~~~~ly-~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 335 YRSKKEAWAAGGSGI----LLRSTD-G---GKSWKRDKGADN----IAANLY-SVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred EcCCCcEEEEECCCc----EEEeCC-C---CcceeEccccCC----CCccee-EEEEcCCCceEEEeCCcE
Confidence 566888988886431 22 221 1 346764331111 234667 333356788998887643
No 93
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=75.37 E-value=74 Score=30.00 Aligned_cols=135 Identities=16% Similarity=0.285 Sum_probs=65.0
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc-cccCcceEEEe
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQIL 176 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~~L 176 (557)
.+.+||..+++....-..+.....+.....+++++++|+.. ..+.+||.. +.+-.. . +. ....-.+.+..
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~---~~~~~~--~-~~~~~~~i~~~~~~ 144 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD---KTIKVWDVE---TGKCLT--T-LRGHTDWVNSVAFS 144 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCC---CeEEEEECC---CcEEEE--E-eccCCCcEEEEEEc
Confidence 36788887653222111222222334455677888888732 468899986 332211 1 22 12223344455
Q ss_pred cCCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEc--CceEEEeCCCCe
Q 041651 177 PDGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFAN--TRSILFDYKQNK 253 (557)
Q Consensus 177 ~dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg--~~~~~yDp~t~~ 253 (557)
+++++++.|..+ ..+.+| ... + ....... .. ....-.+...++|+.+++++ ....+||..+.+
T Consensus 145 ~~~~~l~~~~~~-~~i~i~d~~~--~---~~~~~~~---~~-----~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 145 PDGTFVASSSQD-GTIKLWDLRT--G---KCVATLT---GH-----TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred CcCCEEEEEcCC-CcEEEEEccc--c---ccceeEe---cC-----ccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 556776665533 344555 221 0 0000111 00 00011234556776666655 346789988765
Q ss_pred EE
Q 041651 254 VL 255 (557)
Q Consensus 254 W~ 255 (557)
..
T Consensus 211 ~~ 212 (289)
T cd00200 211 CL 212 (289)
T ss_pred ee
Confidence 44
No 94
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=74.33 E-value=76 Score=32.00 Aligned_cols=137 Identities=16% Similarity=0.248 Sum_probs=76.0
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
...+||..+++=+..-..+.+---+.++-+|.+-+|.|-.+ +++..||... .++.+.... +. .-|-.++...|
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD---kTiklwnt~g--~ck~t~~~~-~~-~~WVscvrfsP 158 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD---KTIKLWNTLG--VCKYTIHED-SH-REWVSCVRFSP 158 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc---ceeeeeeecc--cEEEEEecC-CC-cCcEEEEEEcC
Confidence 36788888865544333332222234566788998887653 6788888762 344443322 43 55777777777
Q ss_pred CC-cEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceE--EEeCCCCe
Q 041651 178 DG-RIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSI--LFDYKQNK 253 (557)
Q Consensus 178 dG-~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~--~yDp~t~~ 253 (557)
+. ..+++.+...+++.+|-.. .-....+... ....--.+.+.|||.+-+.||.+.+ ++|....+
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~-------~~~l~~~~~g-----h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLR-------NCQLRTTFIG-----HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CCCCcEEEEccCCceEEEEccC-------Ccchhhcccc-----ccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 63 4444555455566665221 0000000000 1111224567889999999998754 56665554
No 95
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=73.82 E-value=4.9 Score=41.78 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=40.4
Q ss_pred cCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEecCCCC
Q 041651 348 LPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNPH 421 (557)
Q Consensus 348 lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~~ 421 (557)
-|+|+.++.|+.+ .++.+||+.|. + .+..+.-.+.+-.+...-|||+.++.|+-++
T Consensus 124 sp~g~~l~tGsGD-------------~TvR~WD~~Te---T--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 124 SPTGSRLVTGSGD-------------TTVRLWDLDTE---T--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred cCCCceEEecCCC-------------ceEEeeccCCC---C--cceeecCCccEEEEEEECCCcchhhccccCC
Confidence 4899999998754 27899999987 2 2223333445555667789999999998654
No 96
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.07 E-value=1e+02 Score=30.57 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=45.0
Q ss_pred EEEEECCCCcEEECccCCCcccccCee-cCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecC----Cc-ccc---cccC
Q 041651 99 SILYDVATNAYRPLMVQTDTWCSSGSV-LPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIEL----PQ-HLS---ERRW 169 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~~~~~c~~~~~-l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~----~~-~m~---~~R~ 169 (557)
..++|.++++.+..-..+...-++.+. -.++.|+ .|+. + ..++++|.+ +.+=..+ .+ .+. ..||
T Consensus 138 ~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~E-D--GtvRvWd~k---t~k~v~~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 138 IYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAE-D--GTVRVWDTK---TQKHVSMIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred EEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCC-C--ccEEEEecc---ccceeEEeccccChhhcCcccCce
Confidence 678999999987654433322222111 2355554 4554 3 368889987 4332221 00 122 3456
Q ss_pred cceEEEecCCcEEEEcCcCCC
Q 041651 170 YATNQILPDGRIIIIGGRRQF 190 (557)
Q Consensus 170 y~s~~~L~dG~vyvvGG~~~~ 190 (557)
--+.+ . |-.-+|.||....
T Consensus 211 igala-~-~edWlvCGgGp~l 229 (325)
T KOG0649|consen 211 IGALA-V-NEDWLVCGGGPKL 229 (325)
T ss_pred eEEEe-c-cCceEEecCCCce
Confidence 44433 3 6788999986543
No 97
>PRK04792 tolB translocation protein TolB; Provisional
Probab=72.25 E-value=69 Score=34.75 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=54.9
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+.++|..+++.+.+..... .....+..+||+.+++....++...+.++|.. +.++..+.. ...+..+.+.-
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~---~g~~~~Lt~---~g~~~~~~~~S 358 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA---SGKVSRLTF---EGEQNLGGSIT 358 (448)
T ss_pred eEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEEec---CCCCCcCeeEC
Confidence 457788999999888764321 12233456788876665443445678888987 666665421 23333344556
Q ss_pred cCCcEEEEcCcCCCceeE
Q 041651 177 PDGRIIIIGGRRQFNYEF 194 (557)
Q Consensus 177 ~dG~vyvvGG~~~~~~E~ 194 (557)
+||+.+++.+.......+
T Consensus 359 pDG~~l~~~~~~~g~~~I 376 (448)
T PRK04792 359 PDGRSMIMVNRTNGKFNI 376 (448)
T ss_pred CCCCEEEEEEecCCceEE
Confidence 788877775544333333
No 98
>PLN00181 protein SPA1-RELATED; Provisional
Probab=71.23 E-value=2.1e+02 Score=33.44 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=47.7
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeec-CCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEE-
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVL-PNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQI- 175 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l-~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~- 175 (557)
.+.+||..+++....-..+.....+.... .++.++++||.+ ..+++||.. +..- +.. +.......++..
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~~---~~~~--~~~-~~~~~~v~~v~~~ 626 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD---GSVKLWSIN---QGVS--IGT-IKTKANICCVQFP 626 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC---CEEEEEECC---CCcE--EEE-EecCCCeEEEEEe
Confidence 47789988765433222233323333444 378999999873 579999987 3221 111 211111112222
Q ss_pred ecCCcEEEEcCcCCCceeEe
Q 041651 176 LPDGRIIIIGGRRQFNYEFY 195 (557)
Q Consensus 176 L~dG~vyvvGG~~~~~~E~y 195 (557)
-.+|+.+++|+.++ .+.+|
T Consensus 627 ~~~g~~latgs~dg-~I~iw 645 (793)
T PLN00181 627 SESGRSLAFGSADH-KVYYY 645 (793)
T ss_pred CCCCCEEEEEeCCC-eEEEE
Confidence 23688999888664 45556
No 99
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=68.58 E-value=1.1e+02 Score=31.88 Aligned_cols=134 Identities=16% Similarity=0.289 Sum_probs=76.6
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecC--CcccccccCcceEEE
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIEL--PQHLSERRWYATNQI 175 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~--~~~m~~~R~y~s~~~ 175 (557)
-+.+||..++.|--.-..+.-.-.+..+-.||.++++|+.. ..+.+|.-.+. ..+|.-. ..+|..-+|.+.
T Consensus 87 ~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms---G~v~v~~~stg-~~~~~~~~e~~dieWl~WHp~--- 159 (399)
T KOG0296|consen 87 LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS---GKVLVFKVSTG-GEQWKLDQEVEDIEWLKWHPR--- 159 (399)
T ss_pred eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC---ccEEEEEcccC-ceEEEeecccCceEEEEeccc---
Confidence 36799999999754333322111223455799999999984 35778877643 5667642 123666778663
Q ss_pred ecCCcEEEEcCcCCCceeEe--cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcC--ceEEEeCCC
Q 041651 176 LPDGRIIIIGGRRQFNYEFY--PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANT--RSILFDYKQ 251 (557)
Q Consensus 176 L~dG~vyvvGG~~~~~~E~y--P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~--~~~~yDp~t 251 (557)
++|+..|- +..++.+| |.. + ....+..... .--..-+.|+||..+.|-. ...+|||++
T Consensus 160 ---a~illAG~-~DGsvWmw~ip~~--~-------~~kv~~Gh~~-----~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 160 ---AHILLAGS-TDGSVWMWQIPSQ--A-------LCKVMSGHNS-----PCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred ---ccEEEeec-CCCcEEEEECCCc--c-------eeeEecCCCC-----CcccccccCCCceEEEEecCceEEEEecCC
Confidence 45666654 33455566 441 1 1111111000 0012245789997777754 457899999
Q ss_pred CeEEE
Q 041651 252 NKVLK 256 (557)
Q Consensus 252 ~~W~~ 256 (557)
.+-..
T Consensus 222 g~p~~ 226 (399)
T KOG0296|consen 222 GQPLH 226 (399)
T ss_pred CceeE
Confidence 86543
No 100
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=68.50 E-value=1.8e+02 Score=31.55 Aligned_cols=86 Identities=21% Similarity=0.311 Sum_probs=45.2
Q ss_pred EEECCCCcEEECccC--CCcccccC---eecCCCcEEEEcCCCCCC--CeEEEEcCCCC----CCCceecC---Cccccc
Q 041651 101 LYDVATNAYRPLMVQ--TDTWCSSG---SVLPNGTLVQSGGYNDGD--HVVRTFTPCDD----DQCDWIEL---PQHLSE 166 (557)
Q Consensus 101 ~yDp~t~~w~~l~~~--~~~~c~~~---~~l~dG~i~v~GG~~~g~--~~v~~ydp~~~----~t~~W~~~---~~~m~~ 166 (557)
+++|.-+.|..+... ....|.+. +..-||+||.-|=..+|. +.+. +|-++. ....|.++ +..|+.
T Consensus 90 ~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~-~~~~~~~~~~~~~~~~~~~~tP~~v~~ 168 (476)
T COG5184 90 VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIH-KDICDQNNDIIDFDDYELESTPFKVPG 168 (476)
T ss_pred ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccc-cccccccccccccchhhcccCCceeec
Confidence 788888887754432 34455421 233489999999544442 1110 221110 01112111 001221
Q ss_pred --------------ccCcceEEEecCCcEEEEcCc
Q 041651 167 --------------RRWYATNQILPDGRIIIIGGR 187 (557)
Q Consensus 167 --------------~R~y~s~~~L~dG~vyvvGG~ 187 (557)
.-|..+++...||+||..|..
T Consensus 169 ~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~ 203 (476)
T COG5184 169 GSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF 203 (476)
T ss_pred cccccCChheEEeecCCceEEEEccCCcEEEecCc
Confidence 235677888889999999974
No 101
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=67.97 E-value=1.6e+02 Score=30.79 Aligned_cols=49 Identities=18% Similarity=0.447 Sum_probs=36.5
Q ss_pred EEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 99 SILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
+++|..-++.-..+-..++..|.++-+++||+-+++|=. + .++++|||+
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-d--gti~~Wn~k 220 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-D--GTIIVWNPK 220 (399)
T ss_pred EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-C--ceEEEEecC
Confidence 556665554444444557788999999999999998754 3 479999999
No 102
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=66.21 E-value=1.7e+02 Score=30.51 Aligned_cols=262 Identities=12% Similarity=0.066 Sum_probs=129.5
Q ss_pred EEEEECCCCc--EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 99 SILYDVATNA--YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 99 ~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
+..+|+.+.+ |+.........+.+.....||+||+-... + ...+||..++ +..|..-.. .. .++.. .++.
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~--g--~~y~ld~~~G-~~~W~~~~~-~~-~~~~~-~~v~ 151 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD--G--KLYALDASTG-TLVWSRNVG-GS-PYYAS-PPVV 151 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc--c--eEEEEECCCC-cEEEEEecC-CC-eEEec-CcEE
Confidence 6688888877 76543322345666777779998876543 2 6888998644 678986543 22 55543 3455
Q ss_pred cCCcEEEEcCcCCCceeEecCCCCCCCCCceee-ecc-cccccccccCCccceEEEeeCCcEEEEEcC---ceEEEeCCC
Q 041651 177 PDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFM-LHF-LLETRDYAENNLYPFVHLLPDGNLFIFANT---RSILFDYKQ 251 (557)
Q Consensus 177 ~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~-~~~-l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~---~~~~yDp~t 251 (557)
.|+.||+... ++.-+-+.+. ++ ...|.. .+. +... ........+|.+|+-... ...-+|+.+
T Consensus 152 ~~~~v~~~s~-~g~~~al~~~--tG--~~~W~~~~~~~~~~~--------~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 152 GDGTVYVGTD-DGHLYALNAD--TG--TLKWTYETPAPLSLS--------IYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred cCcEEEEecC-CCeEEEEEcc--CC--cEEEEEecCCccccc--------cccCceeecceEEEecCCCcceEEEEEccC
Confidence 5899988641 1111111122 12 124541 111 1100 011112557777776542 245677765
Q ss_pred C--eEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCC
Q 041651 252 N--KVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANP 329 (557)
Q Consensus 252 ~--~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~ 329 (557)
+ .|.... ..+. .+. ... ..|. + ..+.|++.|+.-...+ .....++|......
T Consensus 219 G~~~w~~~~-~~~~--~~~----~~~-~~~~----~---~~~~v~v~~~~~~~~~-----------~g~~~~l~~~~G~~ 272 (370)
T COG1520 219 GTLKWSQKV-SQTI--GRT----AIS-TTPA----V---DGGPVYVDGGVYAGSY-----------GGKLLCLDADTGEL 272 (370)
T ss_pred CcEeeeeee-eccc--Ccc----ccc-cccc----c---cCceEEECCcEEEEec-----------CCeEEEEEcCCCce
Confidence 4 454211 1111 111 000 0010 1 1678888877311111 22355666665567
Q ss_pred cceee-cCC--CCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCC-ceEecCCCCCcccccccc
Q 041651 330 SWVME-EMP--LPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSR-RFSVMEPSTRPRMYHSSA 405 (557)
Q Consensus 330 ~W~~~-~M~--~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~-~W~~~~~~~~~R~yhs~a 405 (557)
.|+.. ++. ..+...+...-.||++|+........ ....+.++++..+.-. .|.....- .+....
T Consensus 273 ~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~w~~~~~g----~~~~~~ 340 (370)
T COG1520 273 IWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGR--------GSGSLYALADVPGGTLLKWSYPVGG----GYSLST 340 (370)
T ss_pred EEEEecccEeccCCeeEEeecCCCccEEEEEeccccc--------cccceEEEeccCCCeeEEEEEeCCC----ceeccc
Confidence 89876 422 23333333333599999976433110 1235677777333222 57644332 222233
Q ss_pred eeccCCcEEEecCC
Q 041651 406 ILLTDGRVLIGGSN 419 (557)
Q Consensus 406 ~llpdG~V~v~GG~ 419 (557)
...-||.+|.++-+
T Consensus 341 ~~~~~g~~y~~~~~ 354 (370)
T COG1520 341 VAGSDGTLYFGGDD 354 (370)
T ss_pred ceeccCeEEecccC
Confidence 33457777776654
No 103
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=65.70 E-value=60 Score=34.98 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=50.8
Q ss_pred cccCcceEEEEECCCCcEEECc-cCCCcccccCeecCCC-cEEEEcCCCCCCCeEEEEcCCCCCCCceec-CCccccccc
Q 041651 92 HTDCTAHSILYDVATNAYRPLM-VQTDTWCSSGSVLPNG-TLVQSGGYNDGDHVVRTFTPCDDDQCDWIE-LPQHLSERR 168 (557)
Q Consensus 92 ~~~~~~~~~~yDp~t~~w~~l~-~~~~~~c~~~~~l~dG-~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~-~~~~m~~~R 168 (557)
.||++ +.+||.+|++...-- ......| .-.-+|+ .++++||.+ +++..||-+ +++-.. .. .+-+
T Consensus 277 sfD~~--lKlwDtETG~~~~~f~~~~~~~c--vkf~pd~~n~fl~G~sd---~ki~~wDiR---s~kvvqeYd---~hLg 343 (503)
T KOG0282|consen 277 SFDRF--LKLWDTETGQVLSRFHLDKVPTC--VKFHPDNQNIFLVGGSD---KKIRQWDIR---SGKVVQEYD---RHLG 343 (503)
T ss_pred eccee--eeeeccccceEEEEEecCCCcee--eecCCCCCcEEEEecCC---CcEEEEecc---chHHHHHHH---hhhh
Confidence 44443 778999998875432 2222334 2334566 999999974 689999988 544221 11 1122
Q ss_pred CcceEEEecCCcEEEEcCcCCCceeEe
Q 041651 169 WYATNQILPDGRIIIIGGRRQFNYEFY 195 (557)
Q Consensus 169 ~y~s~~~L~dG~vyvvGG~~~~~~E~y 195 (557)
.--+...+.+|+-||..- +..++-+|
T Consensus 344 ~i~~i~F~~~g~rFissS-Ddks~riW 369 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSS-DDKSVRIW 369 (503)
T ss_pred heeeeEEccCCceEeeec-cCccEEEE
Confidence 334455666777776542 33344444
No 104
>PRK03629 tolB translocation protein TolB; Provisional
Probab=64.19 E-value=1.3e+02 Score=32.36 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=51.3
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
.+..+|+.+++.+.+.... ..+......+||+.+++.+..++...+.++|.. +.++..+.. .. ........+
T Consensus 312 ~Iy~~d~~~g~~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~---~g~~~~Lt~-~~---~~~~p~~Sp 383 (429)
T PRK03629 312 QVYKVNINGGAPQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA---TGGVQVLTD-TF---LDETPSIAP 383 (429)
T ss_pred eEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECC---CCCeEEeCC-CC---CCCCceECC
Confidence 5666788887777664321 122334566899888776554445678889988 666665543 11 111233457
Q ss_pred CCcEEEEcCcCC
Q 041651 178 DGRIIIIGGRRQ 189 (557)
Q Consensus 178 dG~vyvvGG~~~ 189 (557)
||+.++..+.+.
T Consensus 384 DG~~i~~~s~~~ 395 (429)
T PRK03629 384 NGTMVIYSSSQG 395 (429)
T ss_pred CCCEEEEEEcCC
Confidence 999888776543
No 105
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=62.47 E-value=41 Score=30.04 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=47.2
Q ss_pred CCCceecC-----C---ccccCCceEEEEEEeecccccceEEEEEEcCCccccccCCCcc--eEEeEeEE--EeecC--c
Q 041651 452 VRPKILSL-----N---ETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQR--MVVLKILE--VSHVT--S 517 (557)
Q Consensus 452 ~RP~i~~~-----p---~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR--~v~L~~~~--~~~~g--~ 517 (557)
..|+|... | ..+..|++|.+++...+....+..+|.+ -.-|-.|+-...-+ ..+..|.. ....| +
T Consensus 13 ~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d~~~i~si~VeI-H~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (132)
T PF15418_consen 13 EKPVITLNEIGAFPENCKVATRGDDIHFEADISDNSAIKSIKVEI-HNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKKN 91 (132)
T ss_pred CCCEEEeeecccCCCCCeEEecCCcEEEEEEEEcccceeEEEEEE-ecCcCcccccccccccccCcEEEEEEcccCCccc
Confidence 57888765 3 3578999998888766554234444444 11223333322111 22222211 01112 1
Q ss_pred ceEEEEEECCCCCCcCCCcceEEEEE
Q 041651 518 YVYHLAAVAPSTAEIAPPGYYLLFVV 543 (557)
Q Consensus 518 ~~~~~~~~~P~~~~~~ppG~ymlf~~ 543 (557)
-.....+.+|++ |+||-|-+++.
T Consensus 92 ~~~h~~i~IPa~---a~~G~YH~~i~ 114 (132)
T PF15418_consen 92 YDFHEHIDIPAD---APAGDYHFMIT 114 (132)
T ss_pred EeEEEeeeCCCC---CCCcceEEEEE
Confidence 134556788877 89999987775
No 106
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=62.44 E-value=52 Score=33.30 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=51.3
Q ss_pred cCCCCceeeeE-EEcCCCe--EEEEcCcCCCC------CCcccCCCCccccEEEcCCCCCCCceE--ecCCCCCcccccc
Q 041651 335 EMPLPRVMGDM-ILLPNGD--VIIINGAQLGT------AGWELARGPMTRPIIYRPSEQTSRRFS--VMEPSTRPRMYHS 403 (557)
Q Consensus 335 ~M~~~R~~~~~-v~lpdG~--I~vvGG~~~g~------~g~~~~~~~~~~~e~YDP~t~~g~~W~--~~~~~~~~R~yhs 403 (557)
..|.+|..|.+ |+...|| +.++||.+.-. ..|..--+....+.+.|.+-. ..+ .++.+......|
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG---C~tah~lpEl~dG~SFH- 158 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG---CCTAHTLPELQDGQSFH- 158 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc---ccccccchhhcCCeEEE-
Confidence 78999998876 3444555 56678865311 112211122235666777665 554 467777888888
Q ss_pred cceeccCCcEEEecCCCC
Q 041651 404 SAILLTDGRVLIGGSNPH 421 (557)
Q Consensus 404 ~a~llpdG~V~v~GG~~~ 421 (557)
++ |.-+..||+.||..-
T Consensus 159 vs-lar~D~VYilGGHsl 175 (337)
T PF03089_consen 159 VS-LARNDCVYILGGHSL 175 (337)
T ss_pred EE-EecCceEEEEccEEc
Confidence 33 446899999999743
No 107
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=61.70 E-value=1.8e+02 Score=30.57 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=51.6
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+..+|..+++.+.+....... ......+||+.+++.....+...+..+|.. +.++..+.. ...+....+.-
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~-~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~---~~~~~~l~~---~~~~~~~~~~s 330 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGID-TEPSWSPDGKSIAFTSDRGGSPQIYMMDAD---GGEVRRLTF---RGGYNASPSWS 330 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCC-CCEEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEeec---CCCCccCeEEC
Confidence 35778899988888775432111 122445788876665543444578888887 666655431 12333344555
Q ss_pred cCCcEEEEcCcCCC
Q 041651 177 PDGRIIIIGGRRQF 190 (557)
Q Consensus 177 ~dG~vyvvGG~~~~ 190 (557)
+||+.+++......
T Consensus 331 pdg~~i~~~~~~~~ 344 (417)
T TIGR02800 331 PDGDLIAFVHREGG 344 (417)
T ss_pred CCCCEEEEEEccCC
Confidence 68888877665443
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=59.58 E-value=2.6e+02 Score=30.26 Aligned_cols=225 Identities=17% Similarity=0.277 Sum_probs=110.6
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccC-cceEEEecCCc-EEEEcCcCCCceeEe-cCCCCC
Q 041651 125 VLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRW-YATNQILPDGR-IIIIGGRRQFNYEFY-PKSDED 201 (557)
Q Consensus 125 ~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~-y~s~~~L~dG~-vyvvGG~~~~~~E~y-P~~~~~ 201 (557)
+-+.-.+++++|.+ +.+++|-.... ++. .+.+ |...+. -.+++..++|+ +.+.+|+...- -.| -.+
T Consensus 221 FHp~~plllvaG~d---~~lrifqvDGk-~N~--~lqS-~~l~~fPi~~a~f~p~G~~~i~~s~rrky~-ysyDle~--- 289 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLD---GTLRIFQVDGK-VNP--KLQS-IHLEKFPIQKAEFAPNGHSVIFTSGRRKYL-YSYDLET--- 289 (514)
T ss_pred ecCCCceEEEecCC---CcEEEEEecCc-cCh--hhee-eeeccCccceeeecCCCceEEEecccceEE-EEeeccc---
Confidence 34567788899884 45677754310 343 2322 443332 24566777998 88888876431 112 110
Q ss_pred CCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEE--eCCCCeEEEEecCCCCCCCCccCCCCceEeec
Q 041651 202 LSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILF--DYKQNKVLKEYPEIPGADPRNYPSTGSSVLLP 279 (557)
Q Consensus 202 ~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~y--Dp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp 279 (557)
.+-..+..+.. .+....-..-+.++++..++.|+..+++ ..+|+.|...+ .+++. . +...+.
T Consensus 290 ---ak~~k~~~~~g----~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~---v-----~~~~fs 353 (514)
T KOG2055|consen 290 ---AKVTKLKPPYG----VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGV---V-----SDFTFS 353 (514)
T ss_pred ---cccccccCCCC----cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccE---E-----eeEEEe
Confidence 01111110100 1111122345678999888888766554 55677775322 23321 1 111111
Q ss_pred CcCCCCCcccccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcC
Q 041651 280 LDERNGSTSVQAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIING 358 (557)
Q Consensus 280 ~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG 358 (557)
. ..-+|+++||.. . +.+|+-..++|.+ +|... ... + -..+.-++|..+++|-
T Consensus 354 S--------dsk~l~~~~~~G-e------V~v~nl~~~~~~~--------rf~D~G~v~-g---ts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 354 S--------DSKELLASGGTG-E------VYVWNLRQNSCLH--------RFVDDGSVH-G---TSLCISLNGSYLATGS 406 (514)
T ss_pred c--------CCcEEEEEcCCc-e------EEEEecCCcceEE--------EEeecCccc-e---eeeeecCCCceEEecc
Confidence 1 145777888753 1 1234444444443 56554 331 1 1112335999888764
Q ss_pred cCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCccccc-----ccceeccCCcEEEecCCC
Q 041651 359 AQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYH-----SSAILLTDGRVLIGGSNP 420 (557)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yh-----s~a~llpdG~V~v~GG~~ 420 (557)
.. | -+-+||-.+ .+...+|-|+.+.-- +.-..-+|+.|+.+-+..
T Consensus 407 ~~-G------------iVNIYd~~s----~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 407 DS-G------------IVNIYDGNS----CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred Cc-c------------eEEEeccch----hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 32 3 467888654 344444444333211 112235688888877653
No 109
>PRK05137 tolB translocation protein TolB; Provisional
Probab=59.17 E-value=1.8e+02 Score=31.26 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=48.7
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+.++|..+++.+++..... ........+||+-+++.....+...+.++|.. +.+...+.. ....+.....-
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~---g~~~~~lt~---~~~~~~~~~~S 342 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD---GSNPRRISF---GGGRYSTPVWS 342 (435)
T ss_pred ceEEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECC---CCCeEEeec---CCCcccCeEEC
Confidence 357778999988887754221 12234566899877765544455678888876 444443321 12223334445
Q ss_pred cCCcEEEEcC
Q 041651 177 PDGRIIIIGG 186 (557)
Q Consensus 177 ~dG~vyvvGG 186 (557)
+||+.+++..
T Consensus 343 pdG~~ia~~~ 352 (435)
T PRK05137 343 PRGDLIAFTK 352 (435)
T ss_pred CCCCEEEEEE
Confidence 6887776644
No 110
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=57.61 E-value=17 Score=38.38 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=51.6
Q ss_pred EEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcee-cCCcccccccCcceEEEecC
Q 041651 100 ILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWI-ELPQHLSERRWYATNQILPD 178 (557)
Q Consensus 100 ~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~-~~~~~m~~~R~y~s~~~L~d 178 (557)
.+||..|++---+...+..--...++-+||.+..+||.+ .--+++|.+ +.+-. -++. +-+--+++.--+|
T Consensus 286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD---~~~RvWDlR---tgr~im~L~g---H~k~I~~V~fsPN 356 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD---SLGRVWDLR---TGRCIMFLAG---HIKEILSVAFSPN 356 (459)
T ss_pred hhcccccchhhHhhcccccccceeEecCCCceeeccCcc---chhheeecc---cCcEEEEecc---cccceeeEeECCC
Confidence 466666655433333455545556778999999999985 345678877 33311 1111 2234567777889
Q ss_pred CcEEEEcCcCC
Q 041651 179 GRIIIIGGRRQ 189 (557)
Q Consensus 179 G~vyvvGG~~~ 189 (557)
|..++.||.++
T Consensus 357 Gy~lATgs~Dn 367 (459)
T KOG0272|consen 357 GYHLATGSSDN 367 (459)
T ss_pred ceEEeecCCCC
Confidence 99999998765
No 111
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=57.00 E-value=1e+02 Score=24.97 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=46.7
Q ss_pred CCceecC-CccccCCceEEEEEEeecccccceEEEEEEcCCccccccCCCcceEEeEeEEEeecCcceEEEEEECCCCCC
Q 041651 453 RPKILSL-NETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVYHLAAVAPSTAE 531 (557)
Q Consensus 453 RP~i~~~-p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~P~~~~ 531 (557)
.|.|.++ |..-..|++++|+-+.=+. ...+|.+ . + ...++... + ...+++++|..
T Consensus 2 ~P~I~~i~P~~g~~G~~VtI~G~gFg~---~~~~V~~-g----------~---~~a~v~s~--s---dt~I~~~vP~~-- 57 (81)
T cd02849 2 TPLIGHVGPMMGKAGNTVTISGEGFGS---APGTVYF-G----------T---TAATVISW--S---DTRIVVTVPNV-- 57 (81)
T ss_pred CCEEeeEcCCCCCCCCEEEEEEECCCC---CCcEEEE-C----------C---EEeEEEEE--C---CCEEEEEeCCC--
Confidence 4888887 7777889998886442111 1122221 1 1 33344432 1 14788999954
Q ss_pred cCCCcceEEEEEc-CCCCCccEE
Q 041651 532 IAPPGYYLLFVVH-AEIPSSGMW 553 (557)
Q Consensus 532 ~~ppG~ymlf~~~-~gvPS~a~~ 553 (557)
++|.|-++|.. +|.=|.+.-
T Consensus 58 --~aG~~~V~V~~~~G~~Sn~~~ 78 (81)
T cd02849 58 --PAGNYDVTVKTADGATSNGYN 78 (81)
T ss_pred --CCceEEEEEEeCCCcccCcEe
Confidence 78999999997 688776543
No 112
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=56.86 E-value=77 Score=36.17 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=50.9
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
.+.+|+.+|++-..+-..|..--++.++-++|.+++.|-++ ++|++||-- .+|..... +....---+++.-|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD---kTVRiW~if----~s~~~vEt-l~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD---KTVRIWDIF----SSSGTVET-LEIRSDVLAVSFRP 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc---ceEEEEEee----ccCceeee-EeeccceeEEEEcC
Confidence 46788999998887766665444455677899999999884 789988875 34444432 33333233334444
Q ss_pred CCcEEEEc
Q 041651 178 DGRIIIIG 185 (557)
Q Consensus 178 dG~vyvvG 185 (557)
||+=+++.
T Consensus 531 dG~elaVa 538 (893)
T KOG0291|consen 531 DGKELAVA 538 (893)
T ss_pred CCCeEEEE
Confidence 55555554
No 113
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.80 E-value=2.3e+02 Score=29.17 Aligned_cols=97 Identities=20% Similarity=0.392 Sum_probs=49.8
Q ss_pred CCcEEEEEc---CceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCcccccccc
Q 041651 233 DGNLFIFAN---TRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQ 309 (557)
Q Consensus 233 ~G~ifv~gg---~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~ 309 (557)
++.+.+|+- .-+.+||+.+.+-...+.+ |. .|.+. |=++..+ +|+.+..-=.+ +
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~--gRHFy--GHg~fs~----------dG~~LytTEnd---~----- 72 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PP--GRHFY--GHGVFSP----------DGRLLYTTEND---Y----- 72 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CC--CCEEe--cCEEEcC----------CCCEEEEeccc---c-----
Confidence 445555653 3467899999886654543 22 36543 5455433 55555542211 1
Q ss_pred ccccccCCceEEEEecCCCCcceee-cCC-CCceeeeEEEcCCC-eEEEEcC
Q 041651 310 GVFIRAISTCGRLVVSHANPSWVME-EMP-LPRVMGDMILLPNG-DVIIING 358 (557)
Q Consensus 310 ~~~~pa~~s~~~~d~~~~~~~W~~~-~M~-~~R~~~~~v~lpdG-~I~vvGG 358 (557)
+....-+..||.. ..++.. ..+ .+-.=|....+||| .+.|.+|
T Consensus 73 ---~~g~G~IgVyd~~---~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 73 ---ETGRGVIGVYDAA---RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred ---CCCcEEEEEEECc---CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 1112233444543 234433 222 23334677889999 5555555
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=56.27 E-value=1.9e+02 Score=31.19 Aligned_cols=134 Identities=9% Similarity=0.065 Sum_probs=68.2
Q ss_pred ceEEEEECCCCcEEECccCC---CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceE
Q 041651 97 AHSILYDVATNAYRPLMVQT---DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATN 173 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~---~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~ 173 (557)
.....||..+.+.+.+..+. ..+-..-.+-+++..+++-|.. .-+.+.... +..|...-. |. ++ -...
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---G~I~lLhak---T~eli~s~K-ie-G~-v~~~ 350 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---GHIHLLHAK---TKELITSFK-IE-GV-VSDF 350 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---ceEEeehhh---hhhhhheee-ec-cE-EeeE
Confidence 34678999999998887542 1122222344677777777763 235556555 677754322 32 22 1223
Q ss_pred EEecCCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCc--eEEEeCC
Q 041651 174 QILPDGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTR--SILFDYK 250 (557)
Q Consensus 174 ~~L~dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~--~~~yDp~ 250 (557)
+.-.||+.+++.|.++ .+.+| -..+. ...+|..-..+.. -+.+..++|..|+.|... +-+||-.
T Consensus 351 ~fsSdsk~l~~~~~~G-eV~v~nl~~~~--~~~rf~D~G~v~g----------ts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTG-EVYVWNLRQNS--CLHRFVDDGSVHG----------TSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred EEecCCcEEEEEcCCc-eEEEEecCCcc--eEEEEeecCccce----------eeeeecCCCceEEeccCcceEEEeccc
Confidence 3345776655555443 22222 11000 0011211111111 123445799988888765 4578866
Q ss_pred CC
Q 041651 251 QN 252 (557)
Q Consensus 251 t~ 252 (557)
+-
T Consensus 418 s~ 419 (514)
T KOG2055|consen 418 SC 419 (514)
T ss_pred hh
Confidence 54
No 115
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=55.62 E-value=26 Score=36.69 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=36.4
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCC
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDD 152 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~ 152 (557)
.+.+||+.|.+=...-..+..|-.+.+--+||+.++.|-.+ .++.+|||+++
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d---g~I~lwdpktg 189 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD---GSIRLWDPKTG 189 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC---CeEEEecCCCC
Confidence 48899998854221112355666667778999999988653 57999999854
No 116
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=55.24 E-value=3.1e+02 Score=29.78 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=75.2
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcee---cCCcccccccCcceEE
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWI---ELPQHLSERRWYATNQ 174 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~---~~~~~m~~~R~y~s~~ 174 (557)
.+.+||..+.+-...-..+.....+.++-.||.+++.+.. + ..+++||.. +..-. .+.. ...+..-..+.
T Consensus 269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-d--~~i~vwd~~---~~~~~~~~~~~~-~~~~~~~~~~~ 341 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY-D--GTIRVWDLE---TGSKLCLKLLSG-AENSAPVTSVQ 341 (456)
T ss_pred cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC-C--ccEEEEECC---CCceeeeecccC-CCCCCceeEEE
Confidence 4889999987766555556666667778889999999965 3 579999987 33311 2221 22221222334
Q ss_pred EecCCcEEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcCc--eEEEeCCC
Q 041651 175 ILPDGRIIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTR--SILFDYKQ 251 (557)
Q Consensus 175 ~L~dG~vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~--~~~yDp~t 251 (557)
.-+||+.++++..+. ..-+| .. .+.....+...... ... +-+....++|+..+.|..+ ..+||+.+
T Consensus 342 fsp~~~~ll~~~~d~-~~~~w~l~--~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDR-TLKLWDLR--SGKSVGTYTGHSNL-------VRC-IFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ECCCCcEEEEecCCC-eEEEEEcc--CCcceeeecccCCc-------cee-EecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 446888877776553 22233 11 00000011100000 000 0112235688888888754 56788887
Q ss_pred Ce
Q 041651 252 NK 253 (557)
Q Consensus 252 ~~ 253 (557)
..
T Consensus 411 ~~ 412 (456)
T KOG0266|consen 411 GG 412 (456)
T ss_pred cc
Confidence 44
No 117
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=55.04 E-value=2.9e+02 Score=29.52 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=38.5
Q ss_pred ceeecCCCCce-eeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCC-CCC-ccccccccee
Q 041651 331 WVMEEMPLPRV-MGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEP-STR-PRMYHSSAIL 407 (557)
Q Consensus 331 W~~~~M~~~R~-~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~-~~~-~R~yhs~a~l 407 (557)
|+..+++..+. ..+++...|++++++|... . +|-. ++.|++|+.... -.+ .-+| + +..
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--~--------------v~~s-~D~G~tW~~~~~~~~~~~~ly-~-v~f 378 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSG--I--------------LLRS-TDGGKSWKRDKGADNIAANLY-S-VKF 378 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCC--c--------------EEEe-CCCCcceeEccccCCCCccee-E-EEE
Confidence 33334443332 3344456789999988642 1 1211 355679998652 222 2334 2 333
Q ss_pred ccCCcEEEecCC
Q 041651 408 LTDGRVLIGGSN 419 (557)
Q Consensus 408 lpdG~V~v~GG~ 419 (557)
..+++.|+.|-+
T Consensus 379 ~~~~~g~~~G~~ 390 (398)
T PLN00033 379 FDDKKGFVLGND 390 (398)
T ss_pred cCCCceEEEeCC
Confidence 567999998864
No 118
>PRK04792 tolB translocation protein TolB; Provisional
Probab=53.21 E-value=2.5e+02 Score=30.43 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=48.2
Q ss_pred cceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEE
Q 041651 96 TAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQI 175 (557)
Q Consensus 96 ~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~ 175 (557)
...+..+|..+++++.+... .......+..+||+.+++.+...+...+..+|.. +.+...+.. -... ..+ ..
T Consensus 329 ~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~---~g~~~~lt~-~~~d-~~p--s~ 400 (448)
T PRK04792 329 KPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE---TGAMQVLTS-TRLD-ESP--SV 400 (448)
T ss_pred CceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEecCCceEEEEEECC---CCCeEEccC-CCCC-CCc--eE
Confidence 34677889999998887521 1112234566899887776554444567888987 555544432 1111 122 34
Q ss_pred ecCCcEEEEcC
Q 041651 176 LPDGRIIIIGG 186 (557)
Q Consensus 176 L~dG~vyvvGG 186 (557)
.+||+.++...
T Consensus 401 spdG~~I~~~~ 411 (448)
T PRK04792 401 APNGTMVIYST 411 (448)
T ss_pred CCCCCEEEEEE
Confidence 46888766643
No 119
>PRK00178 tolB translocation protein TolB; Provisional
Probab=53.10 E-value=2.5e+02 Score=29.94 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=49.2
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+..+|..+++++.+... ...+......+||+.+++-...++...+.++|.. +.+.+.+.. -. +......-
T Consensus 311 ~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~---tg~~~~lt~-~~---~~~~p~~s 382 (430)
T PRK00178 311 PQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ---RGSVRILTD-TS---LDESPSVA 382 (430)
T ss_pred ceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECC---CCCEEEccC-CC---CCCCceEC
Confidence 4577788888888877532 1223334556788887766543344568889988 566555432 11 11122344
Q ss_pred cCCcEEEEcCc
Q 041651 177 PDGRIIIIGGR 187 (557)
Q Consensus 177 ~dG~vyvvGG~ 187 (557)
+||+.++....
T Consensus 383 pdg~~i~~~~~ 393 (430)
T PRK00178 383 PNGTMLIYATR 393 (430)
T ss_pred CCCCEEEEEEe
Confidence 68888877544
No 120
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=52.38 E-value=2.5e+02 Score=28.01 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=39.9
Q ss_pred cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEE
Q 041651 335 EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVL 414 (557)
Q Consensus 335 ~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~ 414 (557)
.||..-.. +-+-|+-.+||.||.. ..+..||-.|+ .=...-.-...---| ++-..|||.+|
T Consensus 222 k~P~nV~S--ASL~P~k~~fVaGged-------------~~~~kfDy~Tg---eEi~~~nkgh~gpVh-cVrFSPdGE~y 282 (334)
T KOG0278|consen 222 KMPCNVES--ASLHPKKEFFVAGGED-------------FKVYKFDYNTG---EEIGSYNKGHFGPVH-CVRFSPDGELY 282 (334)
T ss_pred cCcccccc--ccccCCCceEEecCcc-------------eEEEEEeccCC---ceeeecccCCCCceE-EEEECCCCcee
Confidence 56654322 3356999999999965 14567777776 211110000111124 34457999999
Q ss_pred EecCCCC
Q 041651 415 IGGSNPH 421 (557)
Q Consensus 415 v~GG~~~ 421 (557)
..|+.+.
T Consensus 283 AsGSEDG 289 (334)
T KOG0278|consen 283 ASGSEDG 289 (334)
T ss_pred eccCCCc
Confidence 9999864
No 121
>PRK01742 tolB translocation protein TolB; Provisional
Probab=51.54 E-value=1.7e+02 Score=31.40 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
.+.++|..+++-+.+..... .......-+||+.++++...++...++.+|.. +.+...+.. ..--....+--+
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~---~~~~~~lt~---~~~~~~~~~wSp 301 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN---GGTPSQLTS---GAGNNTEPSWSP 301 (429)
T ss_pred EEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECC---CCCeEeecc---CCCCcCCEEECC
Confidence 46788988877665543321 12234667899887776544444467777876 455444322 111122344557
Q ss_pred CCcEEEEc
Q 041651 178 DGRIIIIG 185 (557)
Q Consensus 178 dG~vyvvG 185 (557)
||+-+++.
T Consensus 302 DG~~i~f~ 309 (429)
T PRK01742 302 DGQSILFT 309 (429)
T ss_pred CCCEEEEE
Confidence 88855443
No 122
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.47 E-value=85 Score=30.99 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=54.4
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+.+||..|++..+---.+..--....+--+..|++.|+++ .++++||.+ ++...++. .+.+.+-.-....+
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD---~s~r~wDCR---S~s~ePiQ-ildea~D~V~Si~v 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD---SSVRLWDCR---SRSFEPIQ-ILDEAKDGVSSIDV 153 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc---ceeEEEEcc---cCCCCccc-hhhhhcCceeEEEe
Confidence 458899999987643322222111122222345677778774 689999998 77776664 37777766666666
Q ss_pred cCCcEEEEcCcCCCceeEe
Q 041651 177 PDGRIIIIGGRRQFNYEFY 195 (557)
Q Consensus 177 ~dG~vyvvGG~~~~~~E~y 195 (557)
.+.-+ ++|+...++..|
T Consensus 154 -~~heI-vaGS~DGtvRty 170 (307)
T KOG0316|consen 154 -AEHEI-VAGSVDGTVRTY 170 (307)
T ss_pred -cccEE-EeeccCCcEEEE
Confidence 44444 455554455555
No 123
>PRK04922 tolB translocation protein TolB; Provisional
Probab=51.46 E-value=3.2e+02 Score=29.28 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=48.8
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
....++|+.+++.+++..... ........+||+-+++.....+...+..+|.. +.++..+.. ..+.....+.-
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~---~g~~~~lt~---~g~~~~~~~~S 344 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS---GGSAERLTF---QGNYNARASVS 344 (433)
T ss_pred ceEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC---CCCeEEeec---CCCCccCEEEC
Confidence 357888999998877754221 11234567899877766543444567778876 555554421 22333344556
Q ss_pred cCCcEEEEc
Q 041651 177 PDGRIIIIG 185 (557)
Q Consensus 177 ~dG~vyvvG 185 (557)
+||+.+++.
T Consensus 345 pDG~~Ia~~ 353 (433)
T PRK04922 345 PDGKKIAMV 353 (433)
T ss_pred CCCCEEEEE
Confidence 688776664
No 124
>PRK01742 tolB translocation protein TolB; Provisional
Probab=51.32 E-value=3.4e+02 Score=29.08 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=34.6
Q ss_pred EEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEecCCC
Q 041651 346 ILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNP 420 (557)
Q Consensus 346 v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~ 420 (557)
...|||+.+++.+.. .+.++|..+. +++.+.... ..++ ....|||+.++.++..
T Consensus 339 ~~SpDG~~ia~~~~~--------------~i~~~Dl~~g---~~~~lt~~~---~~~~-~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 339 QISADGKTLVMINGD--------------NVVKQDLTSG---STEVLSSTF---LDES-PSISPNGIMIIYSSTQ 392 (429)
T ss_pred cCCCCCCEEEEEcCC--------------CEEEEECCCC---CeEEecCCC---CCCC-ceECCCCCEEEEEEcC
Confidence 457899877665432 2456898887 776553221 1233 4468999999888754
No 125
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=51.30 E-value=1.3e+02 Score=29.98 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=70.4
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc---cccCcceEEEecCCcEEEEcCcCCCceeEecCCC
Q 041651 123 GSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS---ERRWYATNQILPDGRIIIIGGRRQFNYEFYPKSD 199 (557)
Q Consensus 123 ~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~---~~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~ 199 (557)
.++..|-.-+++||.. +-+++||-. ..+ +++|. .+|.--.+.-+...+-++.. .+..++..|...
T Consensus 106 ~af~~ds~~lltgg~e---kllrvfdln---~p~----App~E~~ghtg~Ir~v~wc~eD~~iLSS-add~tVRLWD~r- 173 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQE---KLLRVFDLN---RPK----APPKEISGHTGGIRTVLWCHEDKCILSS-ADDKTVRLWDHR- 173 (334)
T ss_pred EEecccchhhhccchH---HHhhhhhcc---CCC----CCchhhcCCCCcceeEEEeccCceEEee-ccCCceEEEEec-
Confidence 3455577777888863 567888865 211 12122 22332333333333433333 455566666221
Q ss_pred CCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEc-CceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEee
Q 041651 200 EDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFAN-TRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLL 278 (557)
Q Consensus 200 ~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg-~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vll 278 (557)
+++ .-..+.+... --.+-+..||+|..+.. ..+..+|+++-.-.+.. .||- +- .++.|-
T Consensus 174 Tgt---~v~sL~~~s~---------VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~-k~P~----nV---~SASL~ 233 (334)
T KOG0278|consen 174 TGT---EVQSLEFNSP---------VTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY-KMPC----NV---ESASLH 233 (334)
T ss_pred cCc---EEEEEecCCC---------CcceeeccCCCEEEEecCceeEEeccccccceeec-cCcc----cc---cccccc
Confidence 110 1111111000 01234567999998874 55677899887655432 3443 21 245565
Q ss_pred cCcCCCCCcccccEEEEEcCCC
Q 041651 279 PLDERNGSTSVQAEIMICGGAQ 300 (557)
Q Consensus 279 p~~~~~~~~~~~g~I~v~GG~~ 300 (557)
| +-.+|||||.+
T Consensus 234 P----------~k~~fVaGged 245 (334)
T KOG0278|consen 234 P----------KKEFFVAGGED 245 (334)
T ss_pred C----------CCceEEecCcc
Confidence 5 66999999976
No 126
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=50.93 E-value=2.1e+02 Score=29.78 Aligned_cols=94 Identities=18% Similarity=0.327 Sum_probs=58.3
Q ss_pred cceEEEEECCCCcEEECcc---CC-----CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCc---cc
Q 041651 96 TAHSILYDVATNAYRPLMV---QT-----DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQ---HL 164 (557)
Q Consensus 96 ~~~~~~yDp~t~~w~~l~~---~~-----~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~---~m 164 (557)
+-.+..||+..++++++.. ++ +.+|+...+.+||+.+-+-= .+.+++.+|-...+ +.+-.-... .-
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN--Rg~dsI~~f~V~~~-~g~L~~~~~~~teg 290 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN--RGHDSIAVFSVDPD-GGKLELVGITPTEG 290 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec--CCCCeEEEEEEcCC-CCEEEEEEEeccCC
Confidence 3357788888889987763 22 45677777788998877642 35567777754321 332111111 12
Q ss_pred ccccCcceEEEecCCcEEEEcCcCCCceeEe
Q 041651 165 SERRWYATNQILPDGRIIIIGGRRQFNYEFY 195 (557)
Q Consensus 165 ~~~R~y~s~~~L~dG~vyvvGG~~~~~~E~y 195 (557)
..||.. ..-++|+.+++-+.++.++.+|
T Consensus 291 ~~PR~F---~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 291 QFPRDF---NINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred cCCccc---eeCCCCCEEEEEccCCCcEEEE
Confidence 346642 2345799999988888777777
No 127
>PRK04922 tolB translocation protein TolB; Provisional
Probab=50.60 E-value=3e+02 Score=29.50 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=48.7
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+..+|..+++.+.+... ...+...+.-+||+.+++....++...+.++|.. +.+...+.. ..+.......
T Consensus 316 ~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~---~g~~~~Lt~----~~~~~~p~~s 387 (433)
T PRK04922 316 PQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS---TGSVRTLTP----GSLDESPSFA 387 (433)
T ss_pred ceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECC---CCCeEECCC----CCCCCCceEC
Confidence 3567778888888776532 2233345666798877765333334578899987 555554432 1122223445
Q ss_pred cCCcEEEEcCc
Q 041651 177 PDGRIIIIGGR 187 (557)
Q Consensus 177 ~dG~vyvvGG~ 187 (557)
+||+.++....
T Consensus 388 pdG~~i~~~s~ 398 (433)
T PRK04922 388 PNGSMVLYATR 398 (433)
T ss_pred CCCCEEEEEEe
Confidence 68887666543
No 128
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=50.48 E-value=1.7e+02 Score=30.79 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=25.3
Q ss_pred ccceEEEeeCCc-EEEEEc-----------CceEEEeCCCCeEEEEec
Q 041651 224 LYPFVHLLPDGN-LFIFAN-----------TRSILFDYKQNKVLKEYP 259 (557)
Q Consensus 224 ~yp~~~~~~~G~-ifv~gg-----------~~~~~yDp~t~~W~~~~p 259 (557)
..|+..+.+||+ ||+... ....+||+++.+-...++
T Consensus 47 ~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 47 FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 356766778887 555544 236899999999876564
No 129
>PRK05137 tolB translocation protein TolB; Provisional
Probab=49.85 E-value=2.6e+02 Score=29.95 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=46.5
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+.++|+.+++.+.+..... .......-+||+.+++....++...+.++|.. +..-..+.. -.. ........
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~Lt~-~~~--~~~~~~~s 298 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR---SGTTTRLTD-SPA--IDTSPSYS 298 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECC---CCceEEccC-CCC--ccCceeEc
Confidence 357899999998887754322 22244566899766554433445678888887 554444432 111 11123344
Q ss_pred cCCcEEEEc
Q 041651 177 PDGRIIIIG 185 (557)
Q Consensus 177 ~dG~vyvvG 185 (557)
+||+-+++.
T Consensus 299 pDG~~i~f~ 307 (435)
T PRK05137 299 PDGSQIVFE 307 (435)
T ss_pred CCCCEEEEE
Confidence 688755543
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=49.81 E-value=99 Score=33.67 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=72.6
Q ss_pred cEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccccc
Q 041651 235 NLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVFIR 314 (557)
Q Consensus 235 ~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~~p 314 (557)
++|.-|-+-+-+||.....=..++..|+-..+-+|- -++-|+| +|+-+++||..
T Consensus 433 hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyi--RSckL~p----------dgrtLivGGea-------------- 486 (705)
T KOG0639|consen 433 HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYI--RSCKLLP----------DGRTLIVGGEA-------------- 486 (705)
T ss_pred eeEecCCCeEEEeeccCCCCCCccccccccCcccce--eeeEecC----------CCceEEecccc--------------
Confidence 344333344667776543111122222221122343 3556666 89999999963
Q ss_pred cCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecC
Q 041651 315 AISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVME 393 (557)
Q Consensus 315 a~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~ 393 (557)
.++.+.|+..+++.-+.+ +-.-+-+++- .+-||-||...-=.+ | .+.+||-... +- +.
T Consensus 487 --stlsiWDLAapTprikaeltssapaCyAL-a~spDakvcFsccsd-G------------nI~vwDLhnq---~~--Vr 545 (705)
T KOG0639|consen 487 --STLSIWDLAAPTPRIKAELTSSAPACYAL-AISPDAKVCFSCCSD-G------------NIAVWDLHNQ---TL--VR 545 (705)
T ss_pred --ceeeeeeccCCCcchhhhcCCcchhhhhh-hcCCccceeeeeccC-C------------cEEEEEcccc---ee--ee
Confidence 234456666544444333 3333445543 345788887643211 1 4788988765 32 11
Q ss_pred CCCCcccccccceeccCCcEEEecCCCC
Q 041651 394 PSTRPRMYHSSAILLTDGRVLIGGSNPH 421 (557)
Q Consensus 394 ~~~~~R~yhs~a~llpdG~V~v~GG~~~ 421 (557)
...----..|+..+-+||.=+=+||-++
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCcc
Confidence 2211112235566677898887888654
No 131
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=49.66 E-value=1.5e+02 Score=36.10 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=35.5
Q ss_pred cCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCc----------ccccc-cCcceEEEecCCcEEEEcCcC
Q 041651 122 SGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQ----------HLSER-RWYATNQILPDGRIIIIGGRR 188 (557)
Q Consensus 122 ~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~----------~m~~~-R~y~s~~~L~dG~vyvvGG~~ 188 (557)
+.++..+|.|||+-.. ...+++||+. +.....++. ..... ..-.+++.-+||++||.-..+
T Consensus 808 Gvavd~dG~LYVADs~---N~rIrviD~~---tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 808 GVLCAKDGQIYVADSY---NHKIKKLDPA---TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred eeeEeCCCcEEEEECC---CCEEEEEECC---CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 3455678999998654 3689999997 444432211 01100 112245556789999986543
No 132
>PRK03629 tolB translocation protein TolB; Provisional
Probab=48.27 E-value=3.8e+02 Score=28.77 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=73.4
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
...++|..+++-+.+...... ......-+||+.+++....++...++++|.. +.+...+.. -.. .....+-.+
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~---tg~~~~lt~-~~~--~~~~~~wSP 296 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA---SGQIRQVTD-GRS--NNTEPTWFP 296 (429)
T ss_pred EEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECC---CCCEEEccC-CCC--CcCceEECC
Confidence 467889888887776543221 2234567899866654333444578899987 555554432 111 112334456
Q ss_pred CCcEEEEcCcCCCceeEe--cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcC-----ceEEEeCC
Q 041651 178 DGRIIIIGGRRQFNYEFY--PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANT-----RSILFDYK 250 (557)
Q Consensus 178 dG~vyvvGG~~~~~~E~y--P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~-----~~~~yDp~ 250 (557)
||+.++..........+| ... . .....+.. . ..........+||+.+++... +..++|..
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~-~----g~~~~lt~--~------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNIN-G----GAPQRITW--E------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECC-C----CCeEEeec--C------CCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 888655543322223444 221 1 11111110 0 001112345689986665432 35678998
Q ss_pred CCeEEEEec
Q 041651 251 QNKVLKEYP 259 (557)
Q Consensus 251 t~~W~~~~p 259 (557)
++++. .+.
T Consensus 364 ~g~~~-~Lt 371 (429)
T PRK03629 364 TGGVQ-VLT 371 (429)
T ss_pred CCCeE-EeC
Confidence 88876 353
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=48.08 E-value=3.8e+02 Score=28.82 Aligned_cols=123 Identities=12% Similarity=0.209 Sum_probs=67.0
Q ss_pred ccceEEEeeCCcEEEEEcCc--eEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCC
Q 041651 224 LYPFVHLLPDGNLFIFANTR--SILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQN 301 (557)
Q Consensus 224 ~yp~~~~~~~G~ifv~gg~~--~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~ 301 (557)
-|..+..=|||.||..|-.+ ..+||.+...- .+..|+. . |..--+.-.+ +|--++.+-.+
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpgh---t----~~vk~i~FsE-------NGY~Lat~add- 410 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPGH---T----GPVKAISFSE-------NGYWLATAADD- 410 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccCCCC---C----CceeEEEecc-------CceEEEEEecC-
Confidence 36666677899999998755 45899988763 3333431 1 1111000001 44445544322
Q ss_pred ccccccccccccccCCceEEEEecCCCCcceeecCCCCceeeeEEE-cCCCeEEEEcCcCCCCCCcccCCCCccccEEEc
Q 041651 302 ASFALATQGVFIRAISTCGRLVVSHANPSWVMEEMPLPRVMGDMIL-LPNGDVIIINGAQLGTAGWELARGPMTRPIIYR 380 (557)
Q Consensus 302 ~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~~M~~~R~~~~~v~-lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YD 380 (557)
.++-++|++... -.....++... ...++. =..|+.++++|.+ .++.+|+
T Consensus 411 ---------------~~V~lwDLRKl~-n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~-------------l~Vy~~~ 460 (506)
T KOG0289|consen 411 ---------------GSVKLWDLRKLK-NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSD-------------LQVYICK 460 (506)
T ss_pred ---------------CeEEEEEehhhc-ccceeeccccc-cceeEEEcCCCCeEEeecce-------------eEEEEEe
Confidence 224556665421 12222333322 112222 2458999988644 3789999
Q ss_pred CCCCCCCceEecCCCCC
Q 041651 381 PSEQTSRRFSVMEPSTR 397 (557)
Q Consensus 381 P~t~~g~~W~~~~~~~~ 397 (557)
-.+. +|+.+...+.
T Consensus 461 k~~k---~W~~~~~~~~ 474 (506)
T KOG0289|consen 461 KKTK---SWTEIKELAD 474 (506)
T ss_pred cccc---cceeeehhhh
Confidence 9999 9998766543
No 134
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.81 E-value=1.9e+02 Score=29.68 Aligned_cols=105 Identities=17% Similarity=0.338 Sum_probs=64.6
Q ss_pred eEEEEe-e-CCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEE-CccCC-CcccccCeecC
Q 041651 52 MHMQLL-H-DNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRP-LMVQT-DTWCSSGSVLP 127 (557)
Q Consensus 52 ~h~~~~-~-~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~-l~~~~-~~~c~~~~~l~ 127 (557)
-|.+.. | .+.++++++. | | .+..+||+.+++-.. +.... ..|...+++.+
T Consensus 7 gH~~a~~p~~~~avafaRR---------P-G----------------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~ 60 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR---------P-G----------------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP 60 (305)
T ss_pred ccceeeCCCCCeEEEEEeC---------C-C----------------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC
Confidence 455544 5 6788888874 1 3 257899999988653 33333 45777777888
Q ss_pred CCcEEEEc-CCC-CCCCeEEEEcCCCCCCCceecCCcccc-cccCcceEEEecCCcEEEE--cCc
Q 041651 128 NGTLVQSG-GYN-DGDHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQILPDGRIIII--GGR 187 (557)
Q Consensus 128 dG~i~v~G-G~~-~g~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~vyvv--GG~ 187 (557)
||+++.+= ... .+.-.+-+||.. .....+.. .+ ..-.-|-+..++||+-+|| ||.
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~----~~~~ri~E-~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAA----RGYRRIGE-FPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECc----CCcEEEeE-ecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 99887664 221 233467889986 23333332 22 2344566778889966655 554
No 135
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=47.14 E-value=52 Score=33.28 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=34.6
Q ss_pred cCcceEEEEECCCCcEEE--CccCCCcccccCeecCCCcEEEEcCCC
Q 041651 94 DCTAHSILYDVATNAYRP--LMVQTDTWCSSGSVLPNGTLVQSGGYN 138 (557)
Q Consensus 94 ~~~~~~~~yDp~t~~w~~--l~~~~~~~c~~~~~l~dG~i~v~GG~~ 138 (557)
||...+.+.|++-+-.+. ++...+.+.-..++.-+..||++||+.
T Consensus 128 DC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 128 DCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred cCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 688999999999887764 444566655555666789999999974
No 136
>PTZ00420 coronin; Provisional
Probab=45.35 E-value=4.9e+02 Score=29.30 Aligned_cols=139 Identities=11% Similarity=0.091 Sum_probs=65.2
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCC-CcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCc---ccc-cccCcce
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPN-GTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQ---HLS-ERRWYAT 172 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~d-G~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~---~m~-~~R~y~s 172 (557)
.+.+|+.....-...-..+.........-++ +.++++||.+ ..+++||..+. ...-..... .+. +.+.-.+
T Consensus 55 vI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~D---gtIrIWDi~t~-~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 55 AIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSED---LTIRVWEIPHN-DESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred EEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCC-CccccccccceEEeecCCCcEEE
Confidence 4667776554211111122222222334454 7899998863 57899997521 000110000 021 1222233
Q ss_pred EEEecCCc-EEEEcCcCCCceeEe-cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEc--CceEEEe
Q 041651 173 NQILPDGR-IIIIGGRRQFNYEFY-PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFAN--TRSILFD 248 (557)
Q Consensus 173 ~~~L~dG~-vyvvGG~~~~~~E~y-P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg--~~~~~yD 248 (557)
++.-+++. +++.||.+ .++.+| ... + .....+.. . + . --.+...++|++++.++ ....+||
T Consensus 131 Vaf~P~g~~iLaSgS~D-gtIrIWDl~t--g---~~~~~i~~--~--~----~-V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFD-SFVNIWDIEN--E---KRAFQINM--P--K----K-LSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred EEECCCCCeEEEEEeCC-CeEEEEECCC--C---cEEEEEec--C--C----c-EEEEEECCCCCEEEEEecCCEEEEEE
Confidence 34444565 44556654 456666 331 1 01111110 0 0 0 01233457999998875 3578999
Q ss_pred CCCCeEE
Q 041651 249 YKQNKVL 255 (557)
Q Consensus 249 p~t~~W~ 255 (557)
+++.+-.
T Consensus 196 ~Rsg~~i 202 (568)
T PTZ00420 196 PRKQEIA 202 (568)
T ss_pred CCCCcEE
Confidence 9987654
No 137
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=44.53 E-value=4.6e+02 Score=28.70 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=17.7
Q ss_pred EeeCCcEEEEEc-CceEEEeCCCCe--EEE
Q 041651 230 LLPDGNLFIFAN-TRSILFDYKQNK--VLK 256 (557)
Q Consensus 230 ~~~~G~ifv~gg-~~~~~yDp~t~~--W~~ 256 (557)
+..+|+||+... .....+|.++++ |..
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRY 87 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhcee
Confidence 345888887653 456778988754 653
No 138
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=43.86 E-value=69 Score=32.52 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=37.9
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCC--CC--CCeEEEEcCCCCCCCceecCCc
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYN--DG--DHVVRTFTPCDDDQCDWIELPQ 162 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~--~g--~~~v~~ydp~~~~t~~W~~~~~ 162 (557)
.+-.||+.+.+|..+......--. .....++.-+++||.. .+ ...+-.||.. +.+|+.+..
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~-~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~---~~~w~~~~~ 81 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVT-DLQWASNNQLLVGGNFTLNGTNSSNLATYDFK---NQTWSSLGG 81 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEE-EEEEecCCEEEEEEeeEECCCCceeEEEEecC---CCeeeecCC
Confidence 467899999999988654221111 1222345555555542 12 3567789999 889987654
No 139
>PRK00178 tolB translocation protein TolB; Provisional
Probab=43.50 E-value=4.3e+02 Score=28.07 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=48.9
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
....++|..+++.+.+..... ........+||+-+++.....+...+..+|.. +.++..+.. ..+.......-
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~---~g~~~~lt~---~~~~~~~~~~S 339 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN---GGRAERVTF---VGNYNARPRLS 339 (430)
T ss_pred ceEEEEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEeec---CCCCccceEEC
Confidence 357788999999888754221 12223456788766655443445678888887 566655431 12222233445
Q ss_pred cCCcEEEEcCc
Q 041651 177 PDGRIIIIGGR 187 (557)
Q Consensus 177 ~dG~vyvvGG~ 187 (557)
+||+.+++...
T Consensus 340 pdg~~i~~~~~ 350 (430)
T PRK00178 340 ADGKTLVMVHR 350 (430)
T ss_pred CCCCEEEEEEc
Confidence 68777666543
No 140
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=42.99 E-value=4.6e+02 Score=28.32 Aligned_cols=138 Identities=13% Similarity=0.202 Sum_probs=69.3
Q ss_pred EEEEeeCCeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccCCCcccccC--eecC--C
Q 041651 53 HMQLLHDNRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSG--SVLP--N 128 (557)
Q Consensus 53 h~~~~~~gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~--~~l~--d 128 (557)
-.++-++||+++.||.+ .++.+||..|.+-... .... |... ..+- .
T Consensus 207 ~~avS~Dgkylatgg~d---------------------------~~v~Iw~~~t~ehv~~--~~gh-r~~V~~L~fr~gt 256 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRD---------------------------RHVQIWDCDTLEHVKV--FKGH-RGAVSSLAFRKGT 256 (479)
T ss_pred EEEEcCCCcEEEecCCC---------------------------ceEEEecCcccchhhc--cccc-ccceeeeeeecCc
Confidence 34566799999998753 1477899887654333 1111 1111 1111 2
Q ss_pred CcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc-cccCcceEEEecCCcEEEEcCcCCCceeEe--cCCCCCCCCC
Q 041651 129 GTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQILPDGRIIIIGGRRQFNYEFY--PKSDEDLSFP 205 (557)
Q Consensus 129 G~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~~L~dG~vyvvGG~~~~~~E~y--P~~~~~~~~~ 205 (557)
.++|..+= .+++.+|+.. .....+ . |- ++-.-.+.-+|.-+++..+||++. ++.+| |..
T Consensus 257 ~~lys~s~----Drsvkvw~~~---~~s~ve--t-lyGHqd~v~~IdaL~reR~vtVGgrDr-T~rlwKi~ee------- 318 (479)
T KOG0299|consen 257 SELYSASA----DRSVKVWSID---QLSYVE--T-LYGHQDGVLGIDALSRERCVTVGGRDR-TVRLWKIPEE------- 318 (479)
T ss_pred cceeeeec----CCceEEEehh---HhHHHH--H-HhCCccceeeechhcccceEEeccccc-eeEEEecccc-------
Confidence 34444432 1456666654 222211 1 21 122223344566689999999875 34455 331
Q ss_pred ceeeecccccccccccCCccceEEEeeCCcEEEEEcCceEEE
Q 041651 206 QTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANTRSILF 247 (557)
Q Consensus 206 ~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~~~~~y 247 (557)
+-... . .....+-++.+.|..-|+.|.....++
T Consensus 319 sqlif----r-----g~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 319 SQLIF----R-----GGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred ceeee----e-----CCCCCeeeEEEecccceeeccCCceEE
Confidence 00000 0 001123455666888888887665544
No 141
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=40.56 E-value=3.1e+02 Score=31.02 Aligned_cols=146 Identities=13% Similarity=0.239 Sum_probs=72.4
Q ss_pred EEeeCCcEEEEEcCc--eEEEeCCCCe-EEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCcccc
Q 041651 229 HLLPDGNLFIFANTR--SILFDYKQNK-VLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFA 305 (557)
Q Consensus 229 ~~~~~G~ifv~gg~~--~~~yDp~t~~-W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~ 305 (557)
.++.+|+.++.+..+ +-+|++..+- |- +..+-. .+.|- .++..+. . +..+++.||.++.-+
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c--~stir~--H~DYV---kcla~~a-----k---~~~lvaSgGLD~~If- 143 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFC--MSTIRT--HKDYV---KCLAYIA-----K---NNELVASGGLDRKIF- 143 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchh--Hhhhhc--ccchh---eeeeecc-----c---CceeEEecCCCccEE-
Confidence 355688888887654 5678877653 43 222322 35553 1221111 1 678889999874221
Q ss_pred ccccccccccCC---ceEEEEecCCCCcceeecCC-CCce--eeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEE
Q 041651 306 LATQGVFIRAIS---TCGRLVVSHANPSWVMEEMP-LPRV--MGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIY 379 (557)
Q Consensus 306 ~~~~~~~~pa~~---s~~~~d~~~~~~~W~~~~M~-~~R~--~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~Y 379 (557)
.|+-.+. .+.+. +.-+..++. .++. +. .+.-++|.++|.||... ...+|
T Consensus 144 -----lWDin~~~~~l~~s~------n~~t~~sl~sG~k~siYS-LA~N~t~t~ivsGgtek-------------~lr~w 198 (735)
T KOG0308|consen 144 -----LWDINTGTATLVASF------NNVTVNSLGSGPKDSIYS-LAMNQTGTIIVSGGTEK-------------DLRLW 198 (735)
T ss_pred -----EEEccCcchhhhhhc------cccccccCCCCCccceee-eecCCcceEEEecCccc-------------ceEEe
Confidence 1111111 00111 112222333 3332 22 12335678998888652 46899
Q ss_pred cCCCCCCCceEecCCCCCcccccccceeccCCcEEEecCCC
Q 041651 380 RPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSNP 420 (557)
Q Consensus 380 DP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~~ 420 (557)
||.+.. +-..+- -.+-.--+.++..||+=++.|+.+
T Consensus 199 Dprt~~--kimkLr---GHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 199 DPRTCK--KIMKLR---GHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred cccccc--ceeeee---ccccceEEEEEcCCCCeEeecCCC
Confidence 999971 111111 111112245667899666666543
No 142
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=40.10 E-value=4.7e+02 Score=27.52 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=33.2
Q ss_pred ceEEEEECCCCcEE-ECccCCCcc------cccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 97 AHSILYDVATNAYR-PLMVQTDTW------CSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 97 ~~~~~yDp~t~~w~-~l~~~~~~~------c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
..+.+||++|.+-. .++...+.+ -...++-+||+.+.+--. +..+++.+.|..
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~ 136 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLE 136 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECC
Confidence 46899999998875 344332312 113355678986665443 235788889987
No 143
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=39.98 E-value=1.7e+02 Score=32.63 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=30.1
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEE
Q 041651 124 SVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIII 184 (557)
Q Consensus 124 ~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvv 184 (557)
..+.+++||+.... ..+..+|..++ ...|......+.......+.-++.+|+||+-
T Consensus 116 ~av~~~~v~v~t~d----g~l~ALDa~TG-k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 116 VALYDGKVFFGTLD----ARLVALDAKTG-KVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred ceEECCEEEEEcCC----CEEEEEECCCC-CEEeecccccccccccccCCcEEECCEEEEe
Confidence 44567888774332 46888998854 4568653211221111112233448888774
No 144
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=39.74 E-value=91 Score=24.61 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=31.8
Q ss_pred cCCceEEEEEEeec--ccccceEEEEEEcCCccccccCCCcceEEeEeEEEeecCc-ceEEEEEECCCCCCcCCCcceEE
Q 041651 464 GYKATFQVRFSVEE--YLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTS-YVYHLAAVAPSTAEIAPPGYYLL 540 (557)
Q Consensus 464 ~~g~~~~v~~~~~~--~~~~~~~~v~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~-~~~~~~~~~P~~~~~~ppG~yml 540 (557)
..|++++++++... .......+++|-.|.-++ .....++.-.|+ .|+ -..+++|+.|.+ ++||-|.|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~~~~~~~l~------pG~s~~~~~~V~vp~~---a~~G~y~v 71 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSASPASVPSLP------PGESVTVTFTVTVPAD---AAPGTYTV 71 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----EEEEE--B-------TTSEEEEEEEEEE-TT-----SEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCCccccccCC------CCCEEEEEEEEECCCC---CCCceEEE
Confidence 46776666655432 222245677777776555 222233333332 232 245667777755 46899988
Q ss_pred EEE
Q 041651 541 FVV 543 (557)
Q Consensus 541 f~~ 543 (557)
-+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 145
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=39.65 E-value=2.4e+02 Score=29.46 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=65.9
Q ss_pred ceEEEEECCCCcEEE-Cc---------cCCCcccccCeecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCceecCCcc
Q 041651 97 AHSILYDVATNAYRP-LM---------VQTDTWCSSGSVLPNGTLVQSGGYNDG---DHVVRTFTPCDDDQCDWIELPQH 163 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~-l~---------~~~~~~c~~~~~l~dG~i~v~GG~~~g---~~~v~~ydp~~~~t~~W~~~~~~ 163 (557)
..+.+-|.+.+++.. ++ ...+.|. +.-.||+++.+.=..+| .+..+.||+. .+-..+-+.
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~---~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~---~dp~f~~~~- 190 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS---MLCGDGSLLTVTLDADGKEAQKSTKVFDPD---DDPLFEHPA- 190 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEE---EEETTSCEEEEEETSTSSEEEEEEEESSTT---TS-B-S--E-
T ss_pred CeEEEEECCCCceeeeecCCCEEEEEecCCCceE---EEecCCceEEEEECCCCCEeEeeccccCCC---Ccccccccc-
Confidence 457788888877643 11 1122231 22247777665422222 2345689887 433333221
Q ss_pred c--ccccCcceEEEecCCcEEEE--cCcCCC---ceeEecCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcE
Q 041651 164 L--SERRWYATNQILPDGRIIII--GGRRQF---NYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNL 236 (557)
Q Consensus 164 m--~~~R~y~s~~~L~dG~vyvv--GG~~~~---~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~i 236 (557)
+ ...||++ .+. +|+||.+ +|.... ..+.+... + ..+.|+. ..+-..++--..++|
T Consensus 191 ~~~~~~~~~F--~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~-e--~~~~WrP------------GG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 191 YSRDGGRLYF--VSY-EGNVYSADLSGDSAKFGKPWSLLTDA-E--KADGWRP------------GGWQLIAYHAASGRL 252 (342)
T ss_dssp EETTTTEEEE--EBT-TSEEEEEEETTSSEEEEEEEESS-HH-H--HHTTEEE-------------SSS-EEEETTTTEE
T ss_pred eECCCCeEEE--Eec-CCEEEEEeccCCcccccCcccccCcc-c--cccCcCC------------cceeeeeeccccCeE
Confidence 2 1235554 344 8999984 453211 11111000 0 0013332 122233444467888
Q ss_pred EEEEc-----------CceEEEeCCCCeEEEEe
Q 041651 237 FIFAN-----------TRSILFDYKQNKVLKEY 258 (557)
Q Consensus 237 fv~gg-----------~~~~~yDp~t~~W~~~~ 258 (557)
|+.-. ...|.||+++.+-...+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEE
Confidence 88743 24789999999866544
No 146
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.27 E-value=1.2e+02 Score=34.55 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=51.5
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccC-cceEEEe
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRW-YATNQIL 176 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~-y~s~~~L 176 (557)
.+.+||..++.-.++=..+...-.+.++-++|+-++.|+.. ..+.+||-. +.+ .+.. |..... -.++..-
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~---~~~--~v~~-l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED---GLIKIWDLA---NGS--LVKQ-LKGHTGTIYSLSFS 628 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC---CcEEEEEcC---CCc--chhh-hhcccCceeEEEEe
Confidence 47888888877666544443333345566799999999863 468889987 322 1111 222111 1233334
Q ss_pred cCCcEEEEcCcCC
Q 041651 177 PDGRIIIIGGRRQ 189 (557)
Q Consensus 177 ~dG~vyvvGG~~~ 189 (557)
.||.|+|+||.+.
T Consensus 629 ~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 629 RDGNVLASGGADN 641 (707)
T ss_pred cCCCEEEecCCCC
Confidence 4999999999875
No 147
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.24 E-value=2.5e+02 Score=27.99 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=30.0
Q ss_pred eEEEEECCCCcEEEC-ccCCCcccc-----c--CeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 98 HSILYDVATNAYRPL-MVQTDTWCS-----S--GSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l-~~~~~~~c~-----~--~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
.+.+||.+|.+-..+ .+..+.-|. . +++..|..++|.||- ....+|+..
T Consensus 179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG----p~lslwhLr 235 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG----PKLSLWHLR 235 (325)
T ss_pred cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC----CceeEEecc
Confidence 388999999887654 332222221 1 455668899999985 234555544
No 148
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=38.13 E-value=2.9e+02 Score=27.79 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred eeCCcEEEEEc----CceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccc
Q 041651 231 LPDGNLFIFAN----TRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFAL 306 (557)
Q Consensus 231 ~~~G~ifv~gg----~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~ 306 (557)
..+|.+|-..| .....||+++++..+.. +. +..+...|.+++ +++||.. .+.
T Consensus 53 ~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~---~l--~~~~FgEGit~~------------~d~l~qL------TWk- 108 (264)
T PF05096_consen 53 LDDGTLYESTGLYGQSSLRKVDLETGKVLQSV---PL--PPRYFGEGITIL------------GDKLYQL------TWK- 108 (264)
T ss_dssp EETTEEEEEECSTTEEEEEEEETTTSSEEEEE---E---TTT--EEEEEEE------------TTEEEEE------ESS-
T ss_pred cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE---EC--CccccceeEEEE------------CCEEEEE------Eec-
Q ss_pred cccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCC
Q 041651 307 ATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSE 383 (557)
Q Consensus 307 ~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 383 (557)
...+..||+. ..+.. ..+.+...-+.+.- +.++++..|.+ .....||++
T Consensus 109 ---------~~~~f~yd~~----tl~~~~~~~y~~EGWGLt~d-g~~Li~SDGS~--------------~L~~~dP~~ 158 (264)
T PF05096_consen 109 ---------EGTGFVYDPN----TLKKIGTFPYPGEGWGLTSD-GKRLIMSDGSS--------------RLYFLDPET 158 (264)
T ss_dssp ---------SSEEEEEETT----TTEEEEEEE-SSS--EEEEC-SSCEEEE-SSS--------------EEEEE-TTT
T ss_pred ---------CCeEEEEccc----cceEEEEEecCCcceEEEcC-CCEEEEECCcc--------------ceEEECCcc
No 149
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=36.96 E-value=26 Score=22.49 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=13.9
Q ss_pred ccccccceeccCCcEEEecCCCC
Q 041651 399 RMYHSSAILLTDGRVLIGGSNPH 421 (557)
Q Consensus 399 R~yhs~a~llpdG~V~v~GG~~~ 421 (557)
-.+|++ +|.-||+||.-|.+..
T Consensus 7 G~~ht~-al~~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 7 GGYHTC-ALTSDGEVYCWGDNNY 28 (30)
T ss_dssp ESSEEE-EEE-TTEEEEEE--TT
T ss_pred cCCEEE-EEEcCCCEEEEcCCcC
Confidence 356854 4568999999998653
No 150
>PRK02889 tolB translocation protein TolB; Provisional
Probab=36.12 E-value=5.1e+02 Score=27.70 Aligned_cols=81 Identities=21% Similarity=0.153 Sum_probs=44.0
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
.+.+||..+++-+.+..... .-.+.+.-+||+.+++....++...++.+|.. +.....+.... .. ....+-.+
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~lt~~~--~~-~~~~~wSp 293 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD---GSGLRRLTQSS--GI-DTEPFFSP 293 (427)
T ss_pred EEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECC---CCCcEECCCCC--CC-CcCeEEcC
Confidence 47888998887666643221 12234567899766654333455567777776 44433332100 01 11233456
Q ss_pred CCcEEEEc
Q 041651 178 DGRIIIIG 185 (557)
Q Consensus 178 dG~vyvvG 185 (557)
||+-+++.
T Consensus 294 DG~~l~f~ 301 (427)
T PRK02889 294 DGRSIYFT 301 (427)
T ss_pred CCCEEEEE
Confidence 88755543
No 151
>PRK01029 tolB translocation protein TolB; Provisional
Probab=35.95 E-value=2e+02 Score=31.02 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=38.6
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecC
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIEL 160 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~ 160 (557)
..+.+||+.+++.+.+... ..........+||+.+++-....+...+..+|.. +.+...+
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~---~g~~~~L 410 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI---TKKTRKI 410 (428)
T ss_pred cEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEe
Confidence 4678999999999888643 2223344566799877654433344677788876 5555444
No 152
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=35.83 E-value=5.3e+02 Score=26.95 Aligned_cols=139 Identities=16% Similarity=0.151 Sum_probs=68.0
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
..+.+||..+++.+.+..... ...+....+||+-+++....++...+.++|.. +.....+.. .. .........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~---~~~~~~l~~-~~--~~~~~~~~s 286 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD---GKQLTRLTN-GP--GIDTEPSWS 286 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEECCCCCccEEEEECC---CCCEEECCC-CC--CCCCCEEEC
Confidence 357789999887776654322 12234567888755443332344578888987 555444432 11 111112334
Q ss_pred cCCcEEEEcCcCCCceeEe--cCCCCCCCCCceeeecccccccccccCCccceEEEeeCCcEEEEEcC-----ceEEEeC
Q 041651 177 PDGRIIIIGGRRQFNYEFY--PKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLLPDGNLFIFANT-----RSILFDY 249 (557)
Q Consensus 177 ~dG~vyvvGG~~~~~~E~y--P~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~~~G~ifv~gg~-----~~~~yDp 249 (557)
+||+-+++.........+| ... ...+..+.. .. ...-.....+||+.+++... +..++|.
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~-----~~~~~~l~~--~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDAD-----GGEVRRLTF--RG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECC-----CCCEEEeec--CC------CCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 5887554433222222333 221 112221111 00 00112245678887766543 3567888
Q ss_pred CCCeEE
Q 041651 250 KQNKVL 255 (557)
Q Consensus 250 ~t~~W~ 255 (557)
.+..+.
T Consensus 354 ~~~~~~ 359 (417)
T TIGR02800 354 DGGGER 359 (417)
T ss_pred CCCCeE
Confidence 776554
No 153
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=35.26 E-value=5.3e+02 Score=26.79 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=70.0
Q ss_pred EeeCCcEEEEE-cCceEEEeCCCCe--EEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccc
Q 041651 230 LLPDGNLFIFA-NTRSILFDYKQNK--VLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFAL 306 (557)
Q Consensus 230 ~~~~G~ifv~g-g~~~~~yDp~t~~--W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~ 306 (557)
+.-||+||+.. ......+|+.+.+ |..... . ...... + -.+. . +|+||+-.. +
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~--~---~~~~~~-~-~~~~-------~---~G~i~~g~~-~------ 120 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLL--G---AVAQLS-G-PILG-------S---DGKIYVGSW-D------ 120 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCc--C---cceecc-C-ceEE-------e---CCeEEEecc-c------
Confidence 44578888762 2345678999877 653221 1 001111 1 1111 1 678766332 1
Q ss_pred cccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCC
Q 041651 307 ATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQT 385 (557)
Q Consensus 307 ~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~ 385 (557)
....++|..+....|+.. ... .+..... +..|+.||+... .+ .+.+.|+++.
T Consensus 121 ----------g~~y~ld~~~G~~~W~~~~~~~-~~~~~~~-v~~~~~v~~~s~--~g------------~~~al~~~tG- 173 (370)
T COG1520 121 ----------GKLYALDASTGTLVWSRNVGGS-PYYASPP-VVGDGTVYVGTD--DG------------HLYALNADTG- 173 (370)
T ss_pred ----------ceEEEEECCCCcEEEEEecCCC-eEEecCc-EEcCcEEEEecC--CC------------eEEEEEccCC-
Confidence 123445554445679876 443 4554444 445999998651 11 3566777654
Q ss_pred CCceEecCCC-CCcccccccceeccCCcEEEecC
Q 041651 386 SRRFSVMEPS-TRPRMYHSSAILLTDGRVLIGGS 418 (557)
Q Consensus 386 g~~W~~~~~~-~~~R~yhs~a~llpdG~V~v~GG 418 (557)
...|+.-.+. ...+.+-+.+ .-+|.||+..-
T Consensus 174 ~~~W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~ 205 (370)
T COG1520 174 TLKWTYETPAPLSLSIYGSPA--IASGTVYVGSD 205 (370)
T ss_pred cEEEEEecCCccccccccCce--eecceEEEecC
Confidence 1268743332 2333332223 45888888754
No 154
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=35.21 E-value=1.8e+02 Score=30.76 Aligned_cols=80 Identities=21% Similarity=0.188 Sum_probs=49.0
Q ss_pred ceEEEEECCCCcE-EECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccc-cccCcceEE
Q 041651 97 AHSILYDVATNAY-RPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLS-ERRWYATNQ 174 (557)
Q Consensus 97 ~~~~~yDp~t~~w-~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~s~~ 174 (557)
..+.+||..|++- ..+. +.--|.+..+-.||..+++.-. .++++++||. +.+-.... |. ++---.-+.
T Consensus 154 n~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr---~~~~v~e~--~~heG~k~~Rai 223 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPR---RGTVVSEG--VAHEGAKPARAI 223 (472)
T ss_pred ceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecc---cceeEEEcCC---CCcEeeec--ccccCCCcceeE
Confidence 4577888888763 2332 3334555666678888887543 3799999999 44422211 22 221134467
Q ss_pred EecCCcEEEEcC
Q 041651 175 ILPDGRIIIIGG 186 (557)
Q Consensus 175 ~L~dG~vyvvGG 186 (557)
-|.+|+|+..|=
T Consensus 224 fl~~g~i~tTGf 235 (472)
T KOG0303|consen 224 FLASGKIFTTGF 235 (472)
T ss_pred EeccCceeeecc
Confidence 788999887764
No 155
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.64 E-value=97 Score=35.25 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=31.2
Q ss_pred EEEEECCCCcEE-ECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 99 SILYDVATNAYR-PLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 99 ~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
+.+||..+++-- .+-..++.-| +..+-.||.|+++||.+ ++++.||-.
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~-SlsFS~dg~vLasgg~D---nsV~lWD~~ 649 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIY-SLSFSRDGNVLASGGAD---NSVRLWDLT 649 (707)
T ss_pred EEEEEcCCCcchhhhhcccCcee-EEEEecCCCEEEecCCC---CeEEEEEch
Confidence 789998875432 2221222222 34455799999999974 789999875
No 156
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.61 E-value=6.9e+02 Score=27.54 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=48.7
Q ss_pred eEEEEECCCCcEEECccCC-CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCccccc-ccCcceEEE
Q 041651 98 HSILYDVATNAYRPLMVQT-DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSE-RRWYATNQI 175 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~-~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~-~R~y~s~~~ 175 (557)
.+.+|+-.+.+.+.+-... +.-| ....-.+|..+++|=.. ..+++||.. +++= ... |.. ...+-++..
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vt-Sv~ws~~G~~LavG~~~---g~v~iwD~~---~~k~--~~~-~~~~h~~rvg~la 267 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVT-SVKWSPDGSHLAVGTSD---GTVQIWDVK---EQKK--TRT-LRGSHASRVGSLA 267 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceE-EEEECCCCCEEEEeecC---CeEEEEehh---hccc--ccc-ccCCcCceeEEEe
Confidence 5677888887777665542 2222 22334689999998542 479999987 4332 222 443 222233444
Q ss_pred ecCCcEEEEcCcCC
Q 041651 176 LPDGRIIIIGGRRQ 189 (557)
Q Consensus 176 L~dG~vyvvGG~~~ 189 (557)
- ++.++..|..+.
T Consensus 268 W-~~~~lssGsr~~ 280 (484)
T KOG0305|consen 268 W-NSSVLSSGSRDG 280 (484)
T ss_pred c-cCceEEEecCCC
Confidence 4 788888888765
No 157
>PRK02889 tolB translocation protein TolB; Provisional
Probab=33.50 E-value=5.8e+02 Score=27.22 Aligned_cols=86 Identities=12% Similarity=0.150 Sum_probs=46.5
Q ss_pred CcceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEE
Q 041651 95 CTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQ 174 (557)
Q Consensus 95 ~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~ 174 (557)
+...+..+|..+++.+.+... ..........+||+.+++.....+...++.+|.. +.+...+. . .........
T Consensus 262 g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~---~g~~~~lt--~-~g~~~~~~~ 334 (427)
T PRK02889 262 GNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS---GGAAQRVT--F-TGSYNTSPR 334 (427)
T ss_pred CCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC---CCceEEEe--c-CCCCcCceE
Confidence 344567778887777766432 1122234567899877665433344566677765 44443332 1 122222344
Q ss_pred EecCCcEEEEcCc
Q 041651 175 ILPDGRIIIIGGR 187 (557)
Q Consensus 175 ~L~dG~vyvvGG~ 187 (557)
.-+||+.++....
T Consensus 335 ~SpDG~~Ia~~s~ 347 (427)
T PRK02889 335 ISPDGKLLAYISR 347 (427)
T ss_pred ECCCCCEEEEEEc
Confidence 5568877665443
No 158
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.10 E-value=3.3e+02 Score=30.70 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=28.6
Q ss_pred EEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 99 SILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
+.+||-.|++-.+.-..+..--+...+.+.=-|++.|+. + .++++++..
T Consensus 209 iKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE-D--GTvriWhs~ 257 (794)
T KOG0276|consen 209 IKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE-D--GTVRIWNSK 257 (794)
T ss_pred EEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC-C--ccEEEecCc
Confidence 678998887754332222211223344455567777775 3 468888765
No 159
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=33.06 E-value=4.8e+02 Score=25.59 Aligned_cols=199 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred eEEEecCCcEEEEcCcCC-CceeEecCCCCCCCCCceeeecccccccccccCCccc----------------eEEEeeCC
Q 041651 172 TNQILPDGRIIIIGGRRQ-FNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYP----------------FVHLLPDG 234 (557)
Q Consensus 172 s~~~L~dG~vyvvGG~~~-~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp----------------~~~~~~~G 234 (557)
+++.-++|.+|++|-... ..+--||. +...+.+.+..-|| ...-.++|
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~---------------l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPA---------------LIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEcccc---------------ccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Q ss_pred cEEEEEcCc----eEEEeCCCCeEEEEecCC-----CCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCcccc
Q 041651 235 NLFIFANTR----SILFDYKQNKVLKEYPEI-----PGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFA 305 (557)
Q Consensus 235 ~ifv~gg~~----~~~yDp~t~~W~~~~p~l-----p~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~ 305 (557)
++.+.|.++ ...|+-.++.-+ .+.| .+..+--....+... ++.|++.||..
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~--g~dle~nmhdgtirdl~fld~~~s-------------~~~il~s~gag----- 161 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNAT--GHDLEFNMHDGTIRDLAFLDDPES-------------GGAILASAGAG----- 161 (350)
T ss_pred CeEEecCCCceEEEEeccccccccc--CcceeeeecCCceeeeEEecCCCc-------------CceEEEecCCC-----
Q ss_pred ccccccccccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCC
Q 041651 306 LATQGVFIRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQ 384 (557)
Q Consensus 306 ~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~ 384 (557)
.|.+|--.-...+=-.. +-..+....--.- +|-+++.|-.+. ++..||-.-+
T Consensus 162 ------------dc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdk-------------tirfwdlrv~ 214 (350)
T KOG0641|consen 162 ------------DCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDK-------------TIRFWDLRVN 214 (350)
T ss_pred ------------cceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCc-------------eEEEEeeecc
Q ss_pred CCCceEecCCCCCcccccc-------cceeccCCcEEEecCC--CCcccccccccCCCcceEEEEcC
Q 041651 385 TSRRFSVMEPSTRPRMYHS-------SAILLTDGRVLIGGSN--PHIYYNFTNVVYPTDLSLEAYSP 442 (557)
Q Consensus 385 ~g~~W~~~~~~~~~R~yhs-------~a~llpdG~V~v~GG~--~~~~~~~~~~~~~~~~~vE~y~P 442 (557)
..+..+...|..-+ .+++-|.||+++.|-. .|.-|+.-+ .--|+.|.|
T Consensus 215 -----~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-----~r~iq~f~p 271 (350)
T KOG0641|consen 215 -----SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-----GRMIQRFHP 271 (350)
T ss_pred -----ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-----CceeeeeCC
No 160
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=32.54 E-value=42 Score=25.13 Aligned_cols=34 Identities=3% Similarity=0.012 Sum_probs=20.6
Q ss_pred eEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCC
Q 041651 344 DMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSE 383 (557)
Q Consensus 344 ~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 383 (557)
+.++.|||||++.|-..... .+.-..+.+|+|.-
T Consensus 5 ~~~~q~DGkIlv~G~~~~~~------~~~~~~l~Rln~DG 38 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVDNSS------GNNDFVLARLNADG 38 (55)
T ss_pred EEEECCCCcEEEEEEeecCC------CcccEEEEEECCCC
Confidence 45678999999988543210 11123567777754
No 161
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=32.51 E-value=2.4e+02 Score=26.64 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=42.8
Q ss_pred CccccCCceEEEEEEeecccccceEEEEEEcCCccccccCCCcceEEeEeEEEeecCcceEEEEEECCCCCCcCCCcceE
Q 041651 460 NETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVYHLAAVAPSTAEIAPPGYYL 539 (557)
Q Consensus 460 p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~P~~~~~~ppG~ym 539 (557)
|..+..|+.|++++-..+-- ....+|.+...+........ ....+. +.+| .+++++| -||.||
T Consensus 144 P~~l~~g~~~~~~vl~~GkP-l~~a~V~~~~~~~~~~~~~~-----~~~~~T---D~~G--~~~~~~~------~~G~wl 206 (215)
T PF10670_consen 144 PYKLKAGDPLPFQVLFDGKP-LAGAEVEAFSPGGWYDVEHE-----AKTLKT---DANG--RATFTLP------RPGLWL 206 (215)
T ss_pred cccccCCCEEEEEEEECCeE-cccEEEEEEECCCccccccc-----eEEEEE---CCCC--EEEEecC------CCEEEE
Confidence 56688899888887754421 24578888887766533322 333322 2223 5667666 689999
Q ss_pred EEEEc
Q 041651 540 LFVVH 544 (557)
Q Consensus 540 lf~~~ 544 (557)
|-+..
T Consensus 207 i~a~~ 211 (215)
T PF10670_consen 207 IRASH 211 (215)
T ss_pred EEEEE
Confidence 98864
No 162
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=32.08 E-value=91 Score=25.79 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=34.2
Q ss_pred EEeeC-CeEEEEeecccCCCcccCCCCccccCCCCccccccCcceEEEEECCCCcEEECccCCCcccccCeecCCCcEEE
Q 041651 55 QLLHD-NRVIMFDRTDFGQSNLSLSSGRCRFDPYDTVLHTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQ 133 (557)
Q Consensus 55 ~~~~~-gkv~~~gg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v 133 (557)
.+..+ |+||+-+.... +. -..... ...+.++......|||.|++.+-+... -.|-.|.++-.|+.-++
T Consensus 4 dv~~~~g~vYfTdsS~~----~~--~~~~~~----~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vl 72 (89)
T PF03088_consen 4 DVDQDTGTVYFTDSSSR----YD--RRDWVY----DLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVL 72 (89)
T ss_dssp EE-TTT--EEEEES-SS--------TTGHHH----HHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEE
T ss_pred eEecCCCEEEEEeCccc----cC--ccceee----eeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEE
Confidence 34455 99999887531 11 111111 012445667789999999999877432 12334555666877444
Q ss_pred E
Q 041651 134 S 134 (557)
Q Consensus 134 ~ 134 (557)
+
T Consensus 73 v 73 (89)
T PF03088_consen 73 V 73 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 163
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=31.96 E-value=3.4e+02 Score=23.53 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=13.4
Q ss_pred eEEEEEECCCCCCcCCCcceEEEEE
Q 041651 519 VYHLAAVAPSTAEIAPPGYYLLFVV 543 (557)
Q Consensus 519 ~~~~~~~~P~~~~~~ppG~ymlf~~ 543 (557)
.-+|.|..|+| ||-|.|-|-|-
T Consensus 94 ~~tv~V~spa~---A~VG~y~l~v~ 115 (118)
T PF00868_consen 94 SVTVSVTSPAN---APVGRYKLSVE 115 (118)
T ss_dssp EEEEEEE--TT---S--EEEEEEEE
T ss_pred EEEEEEECCCC---CceEEEEEEEE
Confidence 46777788775 56799999774
No 164
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=30.64 E-value=85 Score=29.76 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=37.5
Q ss_pred EEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEEecCC
Q 041651 346 ILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLIGGSN 419 (557)
Q Consensus 346 v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v~GG~ 419 (557)
.--|+|+.++++|... .. -.+++||..+. +.+....... .+...--||||.+++...
T Consensus 107 ~wsP~G~~l~~~g~~n-~~---------G~l~~wd~~~~-----~~i~~~~~~~--~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 107 SWSPDGRFLVLAGFGN-LN---------GDLEFWDVRKK-----KKISTFEHSD--ATDVEWSPDGRYLATATT 163 (194)
T ss_pred EECCCCCEEEEEEccC-CC---------cEEEEEECCCC-----EEeeccccCc--EEEEEEcCCCCEEEEEEe
Confidence 4469999999998652 21 25899998744 3343333332 234567899999998764
No 165
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.32 E-value=2.4e+02 Score=28.86 Aligned_cols=90 Identities=18% Similarity=0.329 Sum_probs=51.4
Q ss_pred CCCce-eeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCCcccccccceeccCCcEEE
Q 041651 337 PLPRV-MGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTRPRMYHSSAILLTDGRVLI 415 (557)
Q Consensus 337 ~~~R~-~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~~R~yhs~a~llpdG~V~v 415 (557)
...|. ++-.+--+||+++-.--.+ |. ... --+-+||-. . .++.++.-+.--+...-.+|++|||.+|
T Consensus 110 ~~~RHfyGHGvfs~dG~~LYATEnd-----fd-~~r--GViGvYd~r-~---~fqrvgE~~t~GiGpHev~lm~DGrtlv 177 (366)
T COG3490 110 QEGRHFYGHGVFSPDGRLLYATEND-----FD-PNR--GVIGVYDAR-E---GFQRVGEFSTHGIGPHEVTLMADGRTLV 177 (366)
T ss_pred ccCceeecccccCCCCcEEEeecCC-----CC-CCC--ceEEEEecc-c---ccceecccccCCcCcceeEEecCCcEEE
Confidence 34454 3334677899986542111 10 011 146899986 4 6777666554433333578899999887
Q ss_pred ecCC---CCcccccccccCCCcceEEEEcCCC
Q 041651 416 GGSN---PHIYYNFTNVVYPTDLSLEAYSPPY 444 (557)
Q Consensus 416 ~GG~---~~~~~~~~~~~~~~~~~vE~y~Ppy 444 (557)
+-++ .+.++ . -+++++|...|.+
T Consensus 178 vanGGIethpdf--g----R~~lNldsMePSl 203 (366)
T COG3490 178 VANGGIETHPDF--G----RTELNLDSMEPSL 203 (366)
T ss_pred EeCCceeccccc--C----ccccchhhcCccE
Confidence 6543 23211 1 1366777777887
No 166
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=29.19 E-value=1.8e+02 Score=27.53 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=45.2
Q ss_pred eEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEec
Q 041651 98 HSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILP 177 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~ 177 (557)
.+.+||.+...-..+.. ........-++|+.+++||..+....+++||.. + +..+.. ..... --.++=-+
T Consensus 84 ~v~lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~---~--~~~i~~-~~~~~-~t~~~WsP 153 (194)
T PF08662_consen 84 KVTLYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR---K--KKKIST-FEHSD-ATDVEWSP 153 (194)
T ss_pred ccEEEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECC---C--CEEeec-cccCc-EEEEEEcC
Confidence 47788886544444432 112234556899999999975333568999976 3 333322 22222 12233345
Q ss_pred CCcEEEEcC
Q 041651 178 DGRIIIIGG 186 (557)
Q Consensus 178 dG~vyvvGG 186 (557)
||+.++...
T Consensus 154 dGr~~~ta~ 162 (194)
T PF08662_consen 154 DGRYLATAT 162 (194)
T ss_pred CCCEEEEEE
Confidence 888888654
No 167
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=29.14 E-value=4.3e+02 Score=23.78 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=28.6
Q ss_pred eEEEEECCCCc---EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 98 HSILYDVATNA---YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 98 ~~~~yDp~t~~---w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
+...||...|+ ++.++.-.+...-+..--.+..+.++||. .+++-||-.
T Consensus 74 ~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn----csi~Gfd~~ 125 (136)
T PF14781_consen 74 SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN----CSIQGFDYE 125 (136)
T ss_pred eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce----EEEEEeCCC
Confidence 47789988776 34444322222111111235789999996 467778876
No 168
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.25 E-value=5.8e+02 Score=28.10 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=34.4
Q ss_pred eEEEeeCCcEEEEEc--CceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCC
Q 041651 227 FVHLLPDGNLFIFAN--TRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQ 300 (557)
Q Consensus 227 ~~~~~~~G~ifv~gg--~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~ 300 (557)
.+.-.++|+.+++|- ..+++||.++.+- .+.|-.. |..-.+++ . + +..++.+|..+
T Consensus 222 Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~---~~~~~~~-----h~~rvg~l-a-----W----~~~~lssGsr~ 279 (484)
T KOG0305|consen 222 SVKWSPDGSHLAVGTSDGTVQIWDVKEQKK---TRTLRGS-----HASRVGSL-A-----W----NSSVLSSGSRD 279 (484)
T ss_pred EEEECCCCCEEEEeecCCeEEEEehhhccc---cccccCC-----cCceeEEE-e-----c----cCceEEEecCC
Confidence 334456899999985 4578999988763 3333221 11112333 1 4 78899999865
No 169
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=27.84 E-value=2.6e+02 Score=31.11 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=47.7
Q ss_pred ccEEEEEcCCCCccccccccccccccCCceEEEEecCCCCcceee-cCCCC--------ceeeeEEEcCCCeEEEEcCcC
Q 041651 290 QAEIMICGGAQNASFALATQGVFIRAISTCGRLVVSHANPSWVME-EMPLP--------RVMGDMILLPNGDVIIINGAQ 360 (557)
Q Consensus 290 ~g~I~v~GG~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~--------R~~~~~v~lpdG~I~vvGG~~ 360 (557)
+++||++... ..+..+|.......|+.. ..+.. ....+ +++-+++||+... +
T Consensus 69 ~g~vyv~s~~-----------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t~-d 129 (527)
T TIGR03075 69 DGVMYVTTSY-----------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGTL-D 129 (527)
T ss_pred CCEEEEECCC-----------------CcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEcC-C
Confidence 7888886542 124455655545678764 22211 01112 3344788887432 1
Q ss_pred CCCCCcccCCCCccccEEEcCCCCCCCceEecC-CCCCcccccccceeccCCcEEEec
Q 041651 361 LGTAGWELARGPMTRPIIYRPSEQTSRRFSVME-PSTRPRMYHSSAILLTDGRVLIGG 417 (557)
Q Consensus 361 ~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~-~~~~~R~yhs~a~llpdG~V~v~G 417 (557)
+ .+.++|.+|.+ ..|+.-. ..... .....+-++.+|+||+..
T Consensus 130 -g------------~l~ALDa~TGk-~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 130 -A------------RLVALDAKTGK-VVWSKKNGDYKAG-YTITAAPLVVKGKVITGI 172 (527)
T ss_pred -C------------EEEEEECCCCC-EEeeccccccccc-ccccCCcEEECCEEEEee
Confidence 1 46788887762 2586432 21111 111223344588988864
No 170
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=27.65 E-value=91 Score=20.29 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=18.3
Q ss_pred cccCeecCCCcEEEEcCCCCCCCeEEEEc
Q 041651 120 CSSGSVLPNGTLVQSGGYNDGDHVVRTFT 148 (557)
Q Consensus 120 c~~~~~l~dG~i~v~GG~~~g~~~v~~yd 148 (557)
..+.+..+++..+++||.+ +.+++||
T Consensus 14 i~~i~~~~~~~~~~s~~~D---~~i~vwd 39 (39)
T PF00400_consen 14 INSIAWSPDGNFLASGSSD---GTIRVWD 39 (39)
T ss_dssp EEEEEEETTSSEEEEEETT---SEEEEEE
T ss_pred EEEEEEecccccceeeCCC---CEEEEEC
Confidence 3345556778899999873 5777776
No 171
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=27.63 E-value=3.2e+02 Score=21.89 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=40.2
Q ss_pred eecCCccccCCceEEEEEEee--cccccceEEEEEEcCCccccccCCCcceE-EeEeEEEeecCcceEEEEEECCCCCCc
Q 041651 456 ILSLNETIGYKATFQVRFSVE--EYLSAGVVSVRLIAPSFTTHSFGMNQRMV-VLKILEVSHVTSYVYHLAAVAPSTAEI 532 (557)
Q Consensus 456 i~~~p~~~~~g~~~~v~~~~~--~~~~~~~~~v~l~~~~~~TH~~~~~qR~v-~L~~~~~~~~g~~~~~~~~~~P~~~~~ 532 (557)
+...|..+..|+.++|++... +........|.+...+... +++.| .|. .| ...+++++..+.
T Consensus 8 ~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i~~L~------~g-~~~~v~~~~~~~--- 72 (101)
T PF07705_consen 8 ITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTIPSLA------PG-ESETVTFTWTPP--- 72 (101)
T ss_dssp EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEESEB-------TT-EEEEEEEEEE-S---
T ss_pred EeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEECCcC------CC-cEEEEEEEEEeC---
Confidence 455688889999887776643 2222355677777666554 33333 222 23 234555554433
Q ss_pred CCCcceEEEEEc
Q 041651 533 APPGYYLLFVVH 544 (557)
Q Consensus 533 ~ppG~ymlf~~~ 544 (557)
-||.|-|.++.
T Consensus 73 -~~G~~~i~~~i 83 (101)
T PF07705_consen 73 -SPGSYTIRVVI 83 (101)
T ss_dssp -S-CEEEEEEEE
T ss_pred -CCCeEEEEEEE
Confidence 67888877763
No 172
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=27.61 E-value=3.9e+02 Score=28.74 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=46.5
Q ss_pred eEEEEECCCCc-EEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 98 HSILYDVATNA-YRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 98 ~~~~yDp~t~~-w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
.+.+||++..+ +..+......--....+...|..++++|.. -.|.+|+-. +..|+++.. +..--.-.+.+-+
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~---l~Vy~~~k~---~k~W~~~~~-~~~~sg~st~v~F 484 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD---LQVYICKKK---TKSWTEIKE-LADHSGLSTGVRF 484 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce---eEEEEEecc---cccceeeeh-hhhcccccceeee
Confidence 38899987544 222221111112233455679999999853 356677777 789998753 4433223344455
Q ss_pred cCCcEEEEcCcC
Q 041651 177 PDGRIIIIGGRR 188 (557)
Q Consensus 177 ~dG~vyvvGG~~ 188 (557)
.+...|+..|+.
T Consensus 485 g~~aq~l~s~sm 496 (506)
T KOG0289|consen 485 GEHAQYLASTSM 496 (506)
T ss_pred cccceEEeeccc
Confidence 455555554443
No 173
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=27.58 E-value=2.1e+02 Score=34.89 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=33.3
Q ss_pred eEEEEECCCCcEEECccCC-----------C--cccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 98 HSILYDVATNAYRPLMVQT-----------D--TWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~-----------~--~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
.+.+||+.++..+.+.... . ....+.++..||++||+-.. .+.++++|..
T Consensus 826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~---Nn~Irvid~~ 888 (1057)
T PLN02919 826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN---NSLIRYLDLN 888 (1057)
T ss_pred EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC---CCEEEEEECC
Confidence 3788999888876554210 1 12334566678999998654 3689999987
No 174
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=25.93 E-value=7e+02 Score=25.60 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=34.3
Q ss_pred cCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecC---CcEEEEcCc
Q 041651 122 SGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPD---GRIIIIGGR 187 (557)
Q Consensus 122 ~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~d---G~vyvvGG~ 187 (557)
+.++..+|.+++..... ...+.+|+|. .. .+.. ...++..++.+++.. ..+||..-.
T Consensus 217 G~~vDadG~lw~~a~~~--g~~v~~~~pd---G~---l~~~-i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 217 GMAVDADGNLWVAAVWG--GGRVVRFNPD---GK---LLGE-IKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ceEEeCCCCEEEecccC--CceEEEECCC---Cc---EEEE-EECCCCCCccceEeCCCcCEEEEEecC
Confidence 45677899999755442 2478999997 22 2221 234445667776644 566666543
No 175
>PRK04043 tolB translocation protein TolB; Provisional
Probab=25.39 E-value=8e+02 Score=26.28 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=38.7
Q ss_pred ceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCC
Q 041651 97 AHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELP 161 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~ 161 (557)
..+.++|+.+++=+.+..... ........+||+-+++.-..++...++++|.. +.+++.+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~---~g~~~~LT 273 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN---TKTLTQIT 273 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECC---CCcEEEcc
Confidence 358889999988877764322 12233466898655543333445688899987 66676654
No 176
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=25.15 E-value=3.7e+02 Score=21.67 Aligned_cols=75 Identities=20% Similarity=0.156 Sum_probs=45.6
Q ss_pred CceecC-CccccCCceEEEEEEeecccccceEEEEEEcCCccccccCCCcceEEeEeEEEeecCcceEEEEEECCCCCCc
Q 041651 454 PKILSL-NETIGYKATFQVRFSVEEYLSAGVVSVRLIAPSFTTHSFGMNQRMVVLKILEVSHVTSYVYHLAAVAPSTAEI 532 (557)
Q Consensus 454 P~i~~~-p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~TH~~~~~qR~v~L~~~~~~~~g~~~~~~~~~~P~~~~~ 532 (557)
|.|.++ |..-..|++++|.-+ +-.. ...+|.+ +- ...++...+ ...+++++|..
T Consensus 1 P~I~~i~P~~g~pG~~VtI~G~--gFg~-~~~~V~~------------g~--~~a~v~s~s-----dt~I~~~VP~~--- 55 (81)
T cd00604 1 PLIGSVGPVMGKPGNTVTISGE--GFGS-TGGTVYF------------GG--TAAEVLSWS-----DTSIVVEVPRV--- 55 (81)
T ss_pred CeEeeEcCCCCCCCCEEEEEEE--CCCC-CccEEEE------------CC--EEEEEEEEC-----CCEEEEEeCCC---
Confidence 678887 777889999888643 2110 0122211 11 234444321 24788999853
Q ss_pred CCCcceEEEEEc-CCCCCccEEE
Q 041651 533 APPGYYLLFVVH-AEIPSSGMWV 554 (557)
Q Consensus 533 ~ppG~ymlf~~~-~gvPS~a~~v 554 (557)
++|.|-+.|.. +|.=|.+--.
T Consensus 56 -~~g~~~i~V~~~~G~~Sn~~~f 77 (81)
T cd00604 56 -APGNYNISVTTVDGVTSNGYNF 77 (81)
T ss_pred -CCCceEEEEEECCCcccCcEeE
Confidence 67999999986 8887765443
No 177
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.10 E-value=4.3e+02 Score=27.04 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=51.2
Q ss_pred ceEEEEECCCCcEE-ECccCC-CcccccCeecCCCcEEE-EcCCCCC-CCeEEEEcCCCCCCCceecCCcccc-cccCcc
Q 041651 97 AHSILYDVATNAYR-PLMVQT-DTWCSSGSVLPNGTLVQ-SGGYNDG-DHVVRTFTPCDDDQCDWIELPQHLS-ERRWYA 171 (557)
Q Consensus 97 ~~~~~yDp~t~~w~-~l~~~~-~~~c~~~~~l~dG~i~v-~GG~~~g-~~~v~~ydp~~~~t~~W~~~~~~m~-~~R~y~ 171 (557)
....+||+.+.+-- .+.... ..|+..+++-+||+++- +=+..+. ..-+-+||-. .....+.. .+ .+-.-|
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r----~~fqrvgE-~~t~GiGpH 165 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR----EGFQRVGE-FSTHGIGPH 165 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc----cccceecc-cccCCcCcc
Confidence 35678999876543 233333 45777788889998764 4333232 2356688875 33433332 22 334456
Q ss_pred eEEEecCCcEEEEc
Q 041651 172 TNQILPDGRIIIIG 185 (557)
Q Consensus 172 s~~~L~dG~vyvvG 185 (557)
-+..++||+.+|+-
T Consensus 166 ev~lm~DGrtlvva 179 (366)
T COG3490 166 EVTLMADGRTLVVA 179 (366)
T ss_pred eeEEecCCcEEEEe
Confidence 78889999998874
No 178
>PRK01029 tolB translocation protein TolB; Provisional
Probab=25.04 E-value=8.7e+02 Score=26.01 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=34.9
Q ss_pred cCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecCCcEEEEc
Q 041651 122 SGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPDGRIIIIG 185 (557)
Q Consensus 122 ~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~dG~vyvvG 185 (557)
....-+||+.+++.....+...+.+||+. +.+.+.+.. - .+........+||+.+++.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~---~g~~~~Lt~-~--~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLA---TGRDYQLTT-S--PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECC---CCCeEEccC-C--CCCccceEECCCCCEEEEE
Confidence 34556899877765544455689999998 666655542 1 1222233445688766553
No 179
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=24.99 E-value=3.4e+02 Score=31.75 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=45.9
Q ss_pred cceEEEEECCCCc--EEE-CccC---------------CCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCce
Q 041651 96 TAHSILYDVATNA--YRP-LMVQ---------------TDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDW 157 (557)
Q Consensus 96 ~~~~~~yDp~t~~--w~~-l~~~---------------~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W 157 (557)
+..+..+|++|++ |+. +... ......++.+.-.|.++++||..+ ..++.||.+++ ..-|
T Consensus 640 ~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d--~~l~A~D~~tG-k~lW 716 (764)
T TIGR03074 640 WGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQD--NYLRAYDLSTG-KELW 716 (764)
T ss_pred cEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCC--CEEEEEECCCC-ceee
Confidence 3568899999988 652 2100 012333454444556666655433 57999999854 5668
Q ss_pred ecC-Cc-ccccccCcceEEEecCCcEEEE
Q 041651 158 IEL-PQ-HLSERRWYATNQILPDGRIIII 184 (557)
Q Consensus 158 ~~~-~~-~m~~~R~y~s~~~L~dG~vyvv 184 (557)
+.- +. -+..+..| ...|||-||+
T Consensus 717 ~~~l~~~~~a~P~tY----~~~~GkQYVv 741 (764)
T TIGR03074 717 KARLPAGGQATPMTY----MGKDGKQYVV 741 (764)
T ss_pred EeeCCCCcccCCEEE----EecCCEEEEE
Confidence 752 21 12223333 2028998887
No 180
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=24.99 E-value=2.1e+02 Score=32.30 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=46.9
Q ss_pred EEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEecC
Q 041651 99 SILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQILPD 178 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L~d 178 (557)
+++||..+.+-..--..+...--+.+--+||+.+.+=+.+ ..+++|+|... ...-.+... -...|..--.-++ |
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD---g~~rVy~Prs~-e~pv~Eg~g-pvgtRgARi~wac-d 775 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD---GTLRVYEPRSR-EQPVYEGKG-PVGTRGARILWAC-D 775 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecC---ceEEEeCCCCC-CCccccCCC-CccCcceeEEEEe-c
Confidence 6777777655432222222112234555788887765542 47899999831 111222222 2234543333455 9
Q ss_pred CcEEEEcCcCCC
Q 041651 179 GRIIIIGGRRQF 190 (557)
Q Consensus 179 G~vyvvGG~~~~ 190 (557)
|+++++-|.+..
T Consensus 776 gr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 776 GRIVIVVGFDKS 787 (1012)
T ss_pred CcEEEEeccccc
Confidence 999999998753
No 181
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.24 E-value=1.1e+03 Score=26.98 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=44.8
Q ss_pred EEEEECCCCcEEECccC--CCccccc-Ceec-CCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEE
Q 041651 99 SILYDVATNAYRPLMVQ--TDTWCSS-GSVL-PNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQ 174 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~~--~~~~c~~-~~~l-~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~ 174 (557)
+.+|++..++|...... +..|-+. .+.. .|+-.+++||.+ ..+-+|.+. +.. .+.- |. +-...+|
T Consensus 37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D---~~i~v~~~~---~~~--P~~~-Lk--gH~snVC 105 (745)
T KOG0301|consen 37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD---TTIIVFKLS---QAE--PLYT-LK--GHKSNVC 105 (745)
T ss_pred eeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc---ceEEEEecC---CCC--chhh-hh--cccccee
Confidence 78999999999874432 2223222 2222 355556778874 355577665 211 1110 22 2223344
Q ss_pred Eec-CCcEEEEcCcCCCceeEe
Q 041651 175 ILP-DGRIIIIGGRRQFNYEFY 195 (557)
Q Consensus 175 ~L~-dG~vyvvGG~~~~~~E~y 195 (557)
.|. +.+--++.|++..++-+|
T Consensus 106 ~ls~~~~~~~iSgSWD~TakvW 127 (745)
T KOG0301|consen 106 SLSIGEDGTLISGSWDSTAKVW 127 (745)
T ss_pred eeecCCcCceEecccccceEEe
Confidence 443 222226788877776666
No 182
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.93 E-value=8.2e+02 Score=25.33 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=18.2
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 125 VLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 125 ~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
+..+|..++.||.+ ..+.+||-.
T Consensus 49 vAVs~~~~aSGssD---etI~IYDm~ 71 (362)
T KOG0294|consen 49 LAVSGPYVASGSSD---ETIHIYDMR 71 (362)
T ss_pred EEecceeEeccCCC---CcEEEEecc
Confidence 44588888888875 579999986
No 183
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.81 E-value=2.4e+02 Score=30.87 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=34.9
Q ss_pred EEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEecCCCCC--cccccccceeccCCcEEEecC
Q 041651 345 MILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSVMEPSTR--PRMYHSSAILLTDGRVLIGGS 418 (557)
Q Consensus 345 ~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~~~~~~~--~R~yhs~a~llpdG~V~v~GG 418 (557)
.-++|||+-+++||.. .++-+||-.++ +=..-+.++. +-+|. .| +-||.+|..+-.
T Consensus 471 ckL~pdgrtLivGGea-------------stlsiWDLAap---TprikaeltssapaCyA-La-~spDakvcFscc 528 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEA-------------STLSIWDLAAP---TPRIKAELTSSAPACYA-LA-ISPDAKVCFSCC 528 (705)
T ss_pred eEecCCCceEEecccc-------------ceeeeeeccCC---CcchhhhcCCcchhhhh-hh-cCCccceeeeec
Confidence 4678999999999963 25788998877 4433333333 44443 22 345777665543
No 184
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=23.18 E-value=8.8e+02 Score=25.38 Aligned_cols=146 Identities=19% Similarity=0.307 Sum_probs=77.3
Q ss_pred ceEEEEECCCCcEEECccCC-Cccc--ccCeecCCCcE-EEEcCCCCCCCeEEEEcCCCCCCCceecCC------ccccc
Q 041651 97 AHSILYDVATNAYRPLMVQT-DTWC--SSGSVLPNGTL-VQSGGYNDGDHVVRTFTPCDDDQCDWIELP------QHLSE 166 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~-~~~c--~~~~~l~dG~i-~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~------~~m~~ 166 (557)
..+.+||.+.++.++..... ..-+ ...++-+||++ |++.=- ++.-.+..||+. ..+..++. .....
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~---~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPA---VGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCC---CceEEEeeeeccCccccCC
Confidence 34778888877776654321 1111 12345567766 455322 222245566775 45555442 22446
Q ss_pred ccCcceEEEecCCcEEEEcCcCCCceeEecCCCCCCCCCceeeecccccccccccCCccceEEEe-eCCcEEEEEcCc--
Q 041651 167 RRWYATNQILPDGRIIIIGGRRQFNYEFYPKSDEDLSFPQTFMLHFLLETRDYAENNLYPFVHLL-PDGNLFIFANTR-- 243 (557)
Q Consensus 167 ~R~y~s~~~L~dG~vyvvGG~~~~~~E~yP~~~~~~~~~~w~~~~~l~~t~d~~~~~~yp~~~~~-~~G~ifv~gg~~-- 243 (557)
.+|..+...-+||+.+.+.-+...+...|-..+.+ .+ +.+...+ ......|+-+.. ++|++.+..+.+
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~---g~---L~~~~~~---~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG---GK---LELVGIT---PTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC---CE---EEEEEEe---ccCCcCCccceeCCCCCEEEEEccCCC
Confidence 78888888888999988876655555555110000 11 1111110 011234665544 578888777643
Q ss_pred -e--EEEeCCCCeEE
Q 041651 244 -S--ILFDYKQNKVL 255 (557)
Q Consensus 244 -~--~~yDp~t~~W~ 255 (557)
. ..-|++|++-.
T Consensus 314 ~i~vf~~d~~TG~L~ 328 (346)
T COG2706 314 NITVFERDKETGRLT 328 (346)
T ss_pred cEEEEEEcCCCceEE
Confidence 2 34477787755
No 185
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=22.99 E-value=1.6e+02 Score=19.78 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=17.9
Q ss_pred cceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCC
Q 041651 330 SWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSE 383 (557)
Q Consensus 330 ~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t 383 (557)
.|+.. +- +..... ++-+|+||+.+.. | .+.++|++|
T Consensus 4 ~W~~~~~~---~~~~~~-~v~~g~vyv~~~d--g------------~l~ald~~t 40 (40)
T PF13570_consen 4 LWSYDTGG---PIWSSP-AVAGGRVYVGTGD--G------------NLYALDAAT 40 (40)
T ss_dssp EEEEE-SS------S---EECTSEEEEE-TT--S------------EEEEEETT-
T ss_pred eEEEECCC---CcCcCC-EEECCEEEEEcCC--C------------EEEEEeCCC
Confidence 57664 32 222333 3458998886642 1 467787764
No 186
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=22.54 E-value=4.5e+02 Score=26.96 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=46.9
Q ss_pred eEEEEECCCCcEEECccCC-CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccc-cCcceEEE
Q 041651 98 HSILYDVATNAYRPLMVQT-DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSER-RWYATNQI 175 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~-~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~-R~y~s~~~ 175 (557)
.+.+||+....-....... ..+| ....|..+|+|+.. +.+.+||..+.+ .-.+.-+..+... | +++.
T Consensus 117 ~ik~wD~R~~~~~~~~d~~kkVy~----~~v~g~~LvVg~~~---r~v~iyDLRn~~-~~~q~reS~lkyqtR---~v~~ 185 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFDQGKKVYC----MDVSGNRLVVGTSD---RKVLIYDLRNLD-EPFQRRESSLKYQTR---CVAL 185 (323)
T ss_pred cEEEEeccccccccccccCceEEE----EeccCCEEEEeecC---ceEEEEEccccc-chhhhccccceeEEE---EEEE
Confidence 4677888752211111111 2233 33467888888763 689999987320 0111111123322 3 4667
Q ss_pred ecCCcEEEEcCcCCC-ceeEe
Q 041651 176 LPDGRIIIIGGRRQF-NYEFY 195 (557)
Q Consensus 176 L~dG~vyvvGG~~~~-~~E~y 195 (557)
++++.=|++|-.++. .+|++
T Consensus 186 ~pn~eGy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 186 VPNGEGYVVSSIEGRVAVEYF 206 (323)
T ss_pred ecCCCceEEEeecceEEEEcc
Confidence 788888888876654 46776
No 187
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.48 E-value=2.8e+02 Score=29.19 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=70.3
Q ss_pred CCcEEEEEcCceEEEeCCCCeEEEEecCCCCCCCCccCCCCceEeecCcCCCCCcccccEEEEEcCCCCccccccccccc
Q 041651 233 DGNLFIFANTRSILFDYKQNKVLKEYPEIPGADPRNYPSTGSSVLLPLDERNGSTSVQAEIMICGGAQNASFALATQGVF 312 (557)
Q Consensus 233 ~G~ifv~gg~~~~~yDp~t~~W~~~~p~lp~~~~r~~~~~g~~vllp~~~~~~~~~~~g~I~v~GG~~~~~~~~~~~~~~ 312 (557)
.+.+|+.+|...++||+..+. ++..|.- .+..-.+.-. |. +.-.|+.++|.+
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~---Pv~smsw----G~Dti~svkf------Np---vETsILas~~sD------------ 209 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDN---PVSSMSW----GADSISSVKF------NP---VETSILASCASD------------ 209 (433)
T ss_pred ccccccccCceeeecccccCC---ccceeec----CCCceeEEec------CC---CcchheeeeccC------------
Confidence 467888899888999987654 2322211 1110001111 11 155677777765
Q ss_pred cccCCceEEEEecCCCCcceee-cCCCCceeeeEEEcCCCeEEEEcCcCCCCCCcccCCCCccccEEEcCCCCCCCceEe
Q 041651 313 IRAISTCGRLVVSHANPSWVME-EMPLPRVMGDMILLPNGDVIIINGAQLGTAGWELARGPMTRPIIYRPSEQTSRRFSV 391 (557)
Q Consensus 313 ~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~v~lpdG~I~vvGG~~~g~~g~~~~~~~~~~~e~YDP~t~~g~~W~~ 391 (557)
++...||..+..+.=+.. .|..--.. --|++-.|++|-.+ .....||-..-
T Consensus 210 ----rsIvLyD~R~~~Pl~KVi~~mRTN~Is----wnPeafnF~~a~ED-------------~nlY~~DmR~l------- 261 (433)
T KOG0268|consen 210 ----RSIVLYDLRQASPLKKVILTMRTNTIC----WNPEAFNFVAANED-------------HNLYTYDMRNL------- 261 (433)
T ss_pred ----CceEEEecccCCccceeeeecccccee----cCccccceeecccc-------------ccceehhhhhh-------
Confidence 345667776643333333 55443222 23677778776433 13466664322
Q ss_pred cCCCCCccccccccee----ccCCcEEEecCCCC
Q 041651 392 MEPSTRPRMYHSSAIL----LTDGRVLIGGSNPH 421 (557)
Q Consensus 392 ~~~~~~~R~yhs~a~l----lpdG~V~v~GG~~~ 421 (557)
-.++.. ...|..|++ -|-|+=+|+|+.+-
T Consensus 262 ~~p~~v-~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 262 SRPLNV-HKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred cccchh-hcccceeEEEeccCCCcchhccccccc
Confidence 112222 345666766 45688888888653
No 188
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=22.35 E-value=4.9e+02 Score=28.11 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=52.2
Q ss_pred cccCcceEEEEECCCCcEEECccCCCcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcc
Q 041651 92 HTDCTAHSILYDVATNAYRPLMVQTDTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYA 171 (557)
Q Consensus 92 ~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~ 171 (557)
+.|+...+.++|..+++-+.|.......+ .-+..+||+-+++.-...|...+.++|+. ..+=+.+. ....++ .
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~---g~~~~riT--~~~~~~-~ 329 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLE---GSQVTRLT--FSGGGN-S 329 (425)
T ss_pred CCCCCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCC---CCceeEee--ccCCCC-c
Confidence 33456678899999888555443322222 55667899999887554566789999987 33323332 111221 1
Q ss_pred eEEEecCCcEEEEcC
Q 041651 172 TNQILPDGRIIIIGG 186 (557)
Q Consensus 172 s~~~L~dG~vyvvGG 186 (557)
.-..-+||+.+++=+
T Consensus 330 ~p~~SpdG~~i~~~~ 344 (425)
T COG0823 330 NPVWSPDGDKIVFES 344 (425)
T ss_pred CccCCCCCCEEEEEe
Confidence 222335888877644
No 189
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=21.90 E-value=5e+02 Score=29.59 Aligned_cols=59 Identities=24% Similarity=0.462 Sum_probs=29.9
Q ss_pred ccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCccccc-ccCcceEEEecCCcEEEEcCcCC
Q 041651 119 WCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSE-RRWYATNQILPDGRIIIIGGRRQ 189 (557)
Q Consensus 119 ~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~-~R~y~s~~~L~dG~vyvvGG~~~ 189 (557)
|-.+.....++.++|.=|.+ +++++|+-. .+. ..+ .++. .-| ++..|.+|.|++ ||+++
T Consensus 221 ~vYsis~~~~~~~Ivs~gED---rtlriW~~~---e~~-q~I--~lPttsiW--sa~~L~NgDIvv-g~SDG 280 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGED---RTLRIWKKD---ECV-QVI--TLPTTSIW--SAKVLLNGDIVV-GGSDG 280 (745)
T ss_pred EEEEEEecCCCCeEEEecCC---ceEEEeecC---ceE-EEE--ecCccceE--EEEEeeCCCEEE-eccCc
Confidence 33334434455555555542 567777643 111 011 1332 345 456677888865 77665
No 190
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.77 E-value=4.3e+02 Score=27.16 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=32.7
Q ss_pred ceEEEEECCCCcEEECccCC--CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 041651 97 AHSILYDVATNAYRPLMVQT--DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPC 150 (557)
Q Consensus 97 ~~~~~yDp~t~~w~~l~~~~--~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~ 150 (557)
..+.+||+.+++-..+.... -+-|+-.-. .+-.++++|-++ ++++.+|++
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWD---KTlKfWD~R 145 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWD---KTLKFWDTR 145 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecC-CCcceeEecccc---cceeecccC
Confidence 45889999999988876432 122321111 123577888874 789999987
No 191
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=21.66 E-value=5.3e+02 Score=22.25 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=35.4
Q ss_pred eEEEEECCCCcEEECccC---CCcccccCeecCCCcEEEEcCCCCCC-C--eEEEEc-CCCCCCCceecC
Q 041651 98 HSILYDVATNAYRPLMVQ---TDTWCSSGSVLPNGTLVQSGGYNDGD-H--VVRTFT-PCDDDQCDWIEL 160 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~---~~~~c~~~~~l~dG~i~v~GG~~~g~-~--~v~~yd-p~~~~t~~W~~~ 160 (557)
.+..||.++.+|+.+..+ ....+....+-.+|+|-++.-...+. . .+++.+ .. ..+|++.
T Consensus 21 ~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~---k~~Wsk~ 87 (129)
T PF08268_consen 21 VIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE---KQEWSKK 87 (129)
T ss_pred EEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc---cceEEEE
Confidence 488999999999987654 22233333444578887765433221 2 344442 22 5678753
No 192
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=21.35 E-value=7.4e+02 Score=25.23 Aligned_cols=83 Identities=17% Similarity=0.360 Sum_probs=50.6
Q ss_pred EEEEECCCCcEEECcc-CCCcccccCeecCC--CcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEE
Q 041651 99 SILYDVATNAYRPLMV-QTDTWCSSGSVLPN--GTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQI 175 (557)
Q Consensus 99 ~~~yDp~t~~w~~l~~-~~~~~c~~~~~l~d--G~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~ 175 (557)
..+||...+.-..+.. ....|-.+..+.|+ .-+++.+|++ +.++++|.. +++-.. .-.-+...--++++
T Consensus 129 iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D---ktvKvWnl~---~~~l~~--~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 129 IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD---KTVKVWNLR---NCQLRT--TFIGHSGYVNTVTV 200 (315)
T ss_pred eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC---ceEEEEccC---Ccchhh--ccccccccEEEEEE
Confidence 5667766555444433 22445555566676 6677777773 789999987 554221 10112333345567
Q ss_pred ecCCcEEEEcCcCC
Q 041651 176 LPDGRIIIIGGRRQ 189 (557)
Q Consensus 176 L~dG~vyvvGG~~~ 189 (557)
-+||.+.+.||.++
T Consensus 201 SpDGslcasGgkdg 214 (315)
T KOG0279|consen 201 SPDGSLCASGGKDG 214 (315)
T ss_pred CCCCCEEecCCCCc
Confidence 78999999999765
No 193
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=21.33 E-value=1.9e+02 Score=28.20 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=30.3
Q ss_pred ceEEEEEECCCCCCcCCCcceEEEEEcCCCCCccEEEEcC
Q 041651 518 YVYHLAAVAPSTAEIAPPGYYLLFVVHAEIPSSGMWVKME 557 (557)
Q Consensus 518 ~~~~~~~~~P~~~~~~ppG~ymlf~~~~gvPS~a~~v~v~ 557 (557)
|-+++++++|.+- ++|.+=|.+-.+|+.|.+..|.|+
T Consensus 179 Gl~QvNv~vP~~~---~~G~~~v~itvgg~~S~~~~i~v~ 215 (215)
T TIGR03437 179 GLYQVNVRVPAGL---ATGAVPVVITVGGVTSNAVTIAVQ 215 (215)
T ss_pred ceEEEEEEcCCCC---CCCcEeEEEEECCccCCcEEEEeC
Confidence 4689999999652 679888888889999999888764
No 194
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=20.48 E-value=3.3e+02 Score=27.88 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=47.6
Q ss_pred eEEEEECCCCcEEECccCC-CcccccCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCceecCCcccccccCcceEEEe
Q 041651 98 HSILYDVATNAYRPLMVQT-DTWCSSGSVLPNGTLVQSGGYNDGDHVVRTFTPCDDDQCDWIELPQHLSERRWYATNQIL 176 (557)
Q Consensus 98 ~~~~yDp~t~~w~~l~~~~-~~~c~~~~~l~dG~i~v~GG~~~g~~~v~~ydp~~~~t~~W~~~~~~m~~~R~y~s~~~L 176 (557)
.+..||..+++-..+.... ..+|-... ..-..+|.||++ ++++.+||+ . +-.... .++..+- .++. +
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD---~~ik~wD~R---~-~~~~~~-~d~~kkV-y~~~-v 143 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWD---KTIKFWDPR---N-KVVVGT-FDQGKKV-YCMD-V 143 (323)
T ss_pred eEEEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccC---ccEEEEecc---c-cccccc-cccCceE-EEEe-c
Confidence 4789999988877765432 23453333 333467889985 689999998 3 111121 1333443 3333 3
Q ss_pred cCCcEEEEcCcCC
Q 041651 177 PDGRIIIIGGRRQ 189 (557)
Q Consensus 177 ~dG~vyvvGG~~~ 189 (557)
.|..+|+|+.+.
T Consensus 144 -~g~~LvVg~~~r 155 (323)
T KOG1036|consen 144 -SGNRLVVGTSDR 155 (323)
T ss_pred -cCCEEEEeecCc
Confidence 477888888654
No 195
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=20.13 E-value=2e+02 Score=29.41 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=57.8
Q ss_pred cccceeccCCcEEEecCCCCcccccccccCCCcceEEEEcCCCCCCccCCCCCceecCCccccCCceEEEEEEeeccccc
Q 041651 402 HSSAILLTDGRVLIGGSNPHIYYNFTNVVYPTDLSLEAYSPPYLSAEYATVRPKILSLNETIGYKATFQVRFSVEEYLSA 481 (557)
Q Consensus 402 hs~a~llpdG~V~v~GG~~~~~~~~~~~~~~~~~~vE~y~Ppyl~~~~~~~RP~i~~~p~~~~~g~~~~v~~~~~~~~~~ 481 (557)
|.+.+|..+|.||..|=+-.+.+..- ....|+|+||-..- .-|.|+ .+..|..|+|-++...
T Consensus 120 nHTl~ltdtG~v~afGeNK~GQlGlg------n~~~~v~s~~~~~~----~~~~v~----~v~cga~ftv~l~~~~---- 181 (443)
T KOG1427|consen 120 NHTLVLTDTGQVLAFGENKYGQLGLG------NAKNEVESTPLPCV----VSDEVT----NVACGADFTVWLSSTE---- 181 (443)
T ss_pred CcEEEEecCCcEEEeccccccccccc------ccccccccCCCccc----cCccce----eeccccceEEEeeccc----
Confidence 34778889999999997754433221 22358888887642 123333 4788999999887442
Q ss_pred ceEEEEEEcCCccccc----cCCCcceEEeEeEE
Q 041651 482 GVVSVRLIAPSFTTHS----FGMNQRMVVLKILE 511 (557)
Q Consensus 482 ~~~~v~l~~~~~~TH~----~~~~qR~v~L~~~~ 511 (557)
++..+-|-..|---|. +||+.--|.|.|..
T Consensus 182 si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 182 SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred ceeecCCccccccccCcchhhccccccceeeeec
Confidence 4555555555555554 46677677776653
Done!